lowQualScore : 22222 222222222 1111 11111111 11111111 1111 11
lowQualScore : 4 2 2 66 5 4 4 2 0 2 5 5 4 3 2 3 55 00000 66 2 555 3 333333333 3 3 3333 3 77 66666666 44 7 444 44 4 11111111 8 1 555 88 8 33 4444 33 44 444 3 4 66666 444 0 5555 33 55
lowQualScore : . . . .. . . . . . . . . . . . . .. ..... .. . ... . ......... . . .... . .. ........ .. . ... .. . ........ . . ... .. . .. .... .. .. ... . . ..... ... . .... .. ..
lowQualScore : 4 9 1 11 7 4 4 9 7 0 1 1 8 6 6 8 88 77777 22 2 333 3 222222222 1 1 4444 1 99 55555555 33 6 777 77 0 55555555 0 0 999 88 0 55 7777 77 77 999 1 5 77777 000 4 9999 88 77
consensus : ATCTTGG-AGTNACNAT--ATCNGAAGAC-CT-TAAGTGGAGCGCCCACATCANCAANATCNCCAAAA-AAGCNAACTCNA-CCATT--GGCTTCCTNAGANGGAACCTNAGACA-CTGTCCA-C-CATCA-TGCAG-AAA-AATG---GCNT--ACATATCG--CT-AGTCAGATC---AACNCTGGAATACNGNTC--CACC-GTCTGGGACCCC--TACCAACAAA-AGGACA-TC-TTNAC--A--CTA--GAGAANGTNCA-----GCGC--CGAG--CNGCNCGCTTCATN-ACAGGAGACTACAAGTCACGGGAC
Reference ( gi|33302 ) : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGGAGCGCTCACATCACCAAGATCTCCAAAA-AAGCAAACTCGA-CCATT--GTCTTCCTTAGAAGGAACCTAAGACA-CTGTCCA-C-CATCA-TGCAG-AAA-AATG---GCAT--ACCTGTCA--CT-AGTAAGATC---AACCCTAGAATACTGTTC--CATC-GTCTGGGATCCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAGGTACA-----GCGC--CAAG--CCGTCCGCTTCATC-ACAGGAGACTACAAGTCACGGGAC
gi|33303 : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGGAGCGCTCACATCACCAAGATCTCCAAAA-AAGCAAACTCGA-CTATC--GGCTTCCTTAGAAGGAACCTAA-ACA-CTGTCCA-C-CATCA-TGCAG-AAA-AATG---GCAT--ACCTGTCA--CT-AGTAAGATC---AACCCTAGAATACTGTTC--CATC-GTCTGGGATCCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAAGTACA-----GCGC--CAAG--CCGTCCGCTTCATC-ACAGGAGACTACAAGTCACAGGAC
gi|33304 : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGGAGCGCTCACATCACCAAGATCTCCAAAA-AAGCATACTCGA-CCATT--GGCTTCCTTAGAAGGAACCTAAAACA-CGGTCCA-C-AATCA-TGCAG-ATA-AATG---GCAT--ACCTGTCA--CT-AGTAAGATC---AACCCTAGAATACTGTTC--CATT-GTCTAGGATCCC--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAAGTACA-----GCGC--CAAG--CCGTCCGCTTCATC-ACAGGAGACTACAAGTCACGGGAC
gi|33305 : ATCTTGG-AGTGACAAT--ATCAGATGAC-CT-TAAGTGGAGTGCCCACATCACCAAGATCTCAAAAAAAAGCAAACTTGA-CCATT--TGCTTCCTTAGAAAGAACCTAAAACA-CTGTCCA-C-CATCA-TGCAG-AAA-AATG---GCAT--ACCTGTCA--CT-AGTAAGATC---AACCCTAGAATACTGTTC--CATC-CTCTACGATTCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--AAGAAAGTACA-----GCGC--CAAG--CCGTCCGCTTCATC-ACAGGAGACTACAAGTCACGGGAC
gi|33306 : ATCTTGGGAGTGACAAC--ATCTGAAGAT-CT-TAATTGGAGCGCCCACATCACCAAGTTCTCCAAAA-CAGCAAACTCGA-CCATT--GTCTCCATTATAAGGAACTTGAAACA-CTGCCCA-T-CATCA-TGCAG-GAA-AACG---GCTT--ATCATTCA--CTAAGTGAGATC---AACCCTAGAATACCGTTC--TATT-ATCTGGGATCCT--TATCAACAAA-AGGACA-TC-CTCAC--A--C-----AAAAAGAACA-----GCAT--CAAG--CCGTCCACTTCATA-ACAGGAAACTACAAGTTACGGGA
gi|33307 : ACCTTGG-AGTCACCAT--AGCCGAAGAC-CT-TCACTGGGGAGTCCACATATTGAACATCAGCAAGA-AAGCAAACTCCA-CCCTA--GGCTTCCTACGCCGCAACCCCAGGAA-CTGTCCC-C-AAGAA-TGCAG-GAA-GTTA---GCCT--ACATATCC--CT-CGTCCGCTC---AACATTGGAATACGGATC--CTCT-ATCTGGGACCCC--TACCATCAA--------------TGC--G--ATC--GAGAAGATACA-----GCGA--CGAG--CAGCACGCTTCATT-AAAAAGGACCACAAGTCACGGGA
gi|33309 : ACCTGGG-AATCACTAT--ATCGGACGAC-CT-GAAGTGGAAAACTCACATCAACAACATAGTCAAGC-GAGCTAATTCTA--CATTG-GGATTCCTCCGACGAAACCTCAGGCA-CTACCCA---AAGGACTGTAG-AAA-GAAC---GCCT--ACATAGCG--CT-CATCAGGTC---CAAGCTGGAATATGGATG--CACC-GTCTGGGACCCT--TACCTGCAAA-GTGACA----TTGAC--AAGCTC--GAACGTGTCCA-----AAGA--TCAG--CAGCACGCTTCATA-ACGAAAGACTACAGATCCCAGGA
gi|33308 : ACCTGGG-AATCACTAT--ATCAGACGAC-CT-GAAGTGGA-TACTCACATCAACAACATAGTCAAGC-ATGCCAACTCTA--CATTA-GGATTCCTCCAACGAAACCTCAGGCA-CTGCCCA---AAGGACTGTAG-AAAGAAT----GCCT--ACATAGCG--CT-CATCAGATC---CAAGCTGGAGTATGGATG--CACC-GTCTAGGACCCT--TACCTGCAAA-GTGACA-AC---AAC--AAGCTT--GAACGTGTCCA-----GAGA--TCAG--CAGCACGCTTCATA-ACAAAAGACTACAGATCCCAGGA
gi|33310 : ATCTCGG-CATCACAAT--CTCACAAGAC-TTATCA-TGGAACTCACACGTCGACAATATCACTAGAA-AAGCAAA-TAAA---ATTTAGGATTCCTGAGAAGGAACACAAAA-----GTTCA-TTCA-CA-AGCACTAAA-AGTTACTGCAT--A--TAACT--CT-AGTCAGGCCCCCAACTC--GAATACTGCTC--CTCT-GTCTGGTCTCCCCATACCGAC-------ACACTCATTTACCAA--TTA--GAGGATGTACA-----
gi|33312 : TTGG-AGTAACCATTAAT---AAAACACT-CAAATGAGACTCGTACATATGCAAAAGTAAAAAGA-AAACGGACTCTA-CTATG--GGATTTCTGCGACGAAACCTAAGACA-TTGTCTT-C-CGTCG-CTCAA-ACT-CACA---GCCT--AC--AGCACCCT-AGTTAGGTC---AGTACTCGAGTACAGCTG--TACC-ATCTGGGACCCA--TATCTACAAA-AGAACA-TT-TCAGC--G--CTG--GAGAAGGTACAACGGTGCGCTGCAAGATTCAGCTGCTTCAACTACAGCCGAC-ACA
gi|33313 : TGGGGAACCCACATTGACAACATCTGTTAAA-AAGCCAGTTCCA-CCTTA--GGCTTTATAAGGCGGAACCTC---CA-CT-TCAAGC-CA-CA----AG-GAA-GTCG---GCCT--ACATCTCG--CT-CGTCAGATC---AACACTGGAATATGGAAC--CATC-ATATGGGACCCA--TTTCTCCAGT-CGGACA----TTGAC--AAGCTG--GAGAGGATTCA-----AAGG--AAGG--CTGCCTGATTTATC-TTGCGCGACTACA
gi|33314 : CACATAAATAATATCACTGGCA-GAGCTAACAAGATCCTTT--ACCTTC-TAAGAAGACATCTA-TACAACTGT--A----ATTACTGTA---AA-AAT-----CATTTAC--ATCT--CT-AGTCCGACC---ACATCTCAAATA---TTCATCATCTGTCTGGGACCCC--TACTA-CAAACAGGACA-TC-TCAGC--A--CTA--GAAAAAGTTCA-----GCGC--CGTG--GAGCATGCTTTATT-ACAGG
gi|33315 : AGCCAACTCTA-C-ATTA-GGATTCCTCCGAGGAAACCTTAGGCA-CTGCCCA-A--AGGACTGTAG-AAA-GAAC---GCCT--ACATAGCG--CT-CATCAGATC---CAAACTGGAATATGGATG--CACC-GTCTGGGACCCT--TACCTGCAAA-GTGACA-TC---GAC--AAGCTT--GAACATGTCCA-----GAGA--TCAG--CAGCACGCTTCATA-ACAAAAGACTACAGATCCCAAGA
gi|33316 : -AAA-AAT-----CATTTAC--ATCT--CT-AGTCTGACC---ACATCTCGAATA---TTCATCATCTGTCTGGGACCCC--TACTA-CAAACAGGACA-TC-TCAGC--A--CTA--GAAAAAGTTCA-----GCGC--CGTG--GAGCACACTTTGTT-ACAGG
gi|33317 : ccttctaagaagacatctatacaactgtaatcaagaagttaagaG---ACAT--ACACGT-----T-TGTAAGATT---CATC-----ATA-TATTCATCATCTGTCTGGGACCCC--TTCTA-CAAACAGGACA-TC-TCAGT--A--CGA--GAAAAGGTTCA-----ACGC--CATG--GAGTACGCTTTGTT-ACAGG
gi|33311 : acataaaacaaagtatactcaagagagC---AACTCGAGAATGCCG--C--CACC-GTCTGGGACCCA--TACCAGCTAA-ACCACG-TC---AAC--A--CTATTGAACAGGTTCA-----GCGC--CGAG--CGGCCCGTTT
Alignments
lowQualScore : 11 11111111 1111 11
lowQualScore : 3 1 1 55 2 3 3 2 7777 33 2 1 1 1 2 1 1 1 22 11 1 6 2 5 66666666 2 2 777777 2 5 3 2 222 1111 5 33 2 555555 1 3 1 3 555 7 7 2 9999 33 33 444 1 1 2 1 33 1 1 1
lowQualScore : . . . .. . . . . .... .. . . . . . . . . .. .. . . . . ........ . . ...... . . . . ... .... . .. . ...... . . . . ... . . . .... .. .. ... . . . . .. . . .
lowQualScore : 6 0 0 00 3 6 6 8 1111 33 9 0 0 0 9 0 0 9 55 66 0 2 6 3 44444444 7 7 777777 7 5 6 7 777 8888 3 77 7 555555 0 1 0 6 111 8 5 5 3333 44 88 111 0 0 7 4 77 0 0 0
consensus : ATCTTGG-AGTNACNAT--ATCNGAAGAC-CT-TAAGTGG----AGCGCCCACATCGNCAANATCNCCAAAAAA-GCNAACTCGACCATT--GGCTTCCTNAGAAGGAACCTNAGACA-CTGTCCA-CCATCA-TG-CA-G------AAA-AATGGCCTA-C-A-TAT--CGC--T-AGTCAG--A---TCAACNCTGGAATACNGNTCCACCGTCTGGGACCCC--TACCNACAAA-AGGACA-TC-TTNAC--A--CTA--GAGAAGGTNCAGCGCCGA--GCNGCNCGCTTCATNACAGGAGACTACAAGTCACGGGAC
Reference ( family-889 ) : ATCTTGG-AGTNACNAT--ATCNGAAGAC-CT-TAAGTGG----AGCGCCCACATCANCAANATCNCCAAAAAA-GCNAACTCNACCATT--GGCTTCCTNAGANGGAACCTNAGACA-CTGTCCA-CCATCA-TG-CA-G------AAA-AATGGCNTA-C-A-TAT--CGC--T-AGTCAG--A---TCAACNCTGGAATACNGNTCCACCGTCTGGGACCCC--TACCAACAAA-AGGACA-TC-TTNAC--A--CTA--GAGAANGTNCAGCGCCGA--GCNGCNCGCTTCATNACAGGAGACTACAAGTCACGGGAC
gi|33302 : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGG----AGCGCTCACATCACCAAGATCTCCAAAAAA-GCAAACTCGACCATT--GTCTTCCTTAGAAGGAACCTAAGACA-CTGTCCA-CCATCA-TG-CA-G------AAA-AATGGCATA-C-C-TGT--CAC--T-AGTAAG--A---TCAACCCTAGAATACTGTTCCATCGTCTGGGATCCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAGGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACGGGAC
gi|33303 : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGG----AGCGCTCACATCACCAAGATCTCCAAAAAA-GCAAACTCGACTATC--GGCTTCCTTAGAAGGAACCTAA-ACA-CTGTCCA-CCATCA-TG-CA-G------AAA-AATGGCATA-C-C-TGT--CAC--T-AGTAAG--A---TCAACCCTAGAATACTGTTCCATCGTCTGGGATCCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAAGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACAGGAC
gi|33304 : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGG----AGCGCTCACATCACCAAGATCTCCAAAAAA-GCATACTCGACCATT--GGCTTCCTTAGAAGGAACCTAAAACA-CGGTCCA-CAATCA-TG-CA-G------ATA-AATGGCATA-C-C-TGT--CAC--T-AGTAAG--A---TCAACCCTAGAATACTGTTCCATTGTCTAGGATCCC--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAAGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACGGGAC
gi|33305 : ATCTTGG-AGTGACAAT--ATCAGATGAC-CT-TAAGTGG----AGTGCCCACATCACCAAGATCTCAAAAAAAAGCAAACTTGACCATT--TGCTTCCTTAGAAAGAACCTAAAACA-CTGTCCA-CCATCA-TG-CA-G------AAA-AATGGCATA-C-C-TGT--CAC--T-AGTAAG--A---TCAACCCTAGAATACTGTTCCATCCTCTACGATTCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--AAGAAAGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACGGGAC
gi|33306 : ATCTTGGGAGTGACAAC--ATCTGAAGAT-CT-TAATTGG----AGCGCCCACATCACCAAGTTCTCCAAAACA-GCAAACTCGACCATT--GTCTCCATTATAAGGAACTTGAAACA-CTGCCCA-TCATCA-TG-CA-G------GAA-AACGGCTTATC-A-T-T--CAC--TAAGTGAG--A---TCAACCCTAGAATACCGTTCTATTATCTGGGATCCT--TATCAACAAA-AGGACA-TC-CTCAC--A--C-----AAAAAGAACAGCATCAA--GCCGTCCACTTCATAACAGGAAACTACAAGTTACGGGA
gi|33307 : ACCTTGG-AGTCACCAT--AGCCGAAGAC-CT-TCACTGG----GGAGTCCACATATTGAACATCAGCAAGAAA-GCAAACTCCACCCTA--GGCTTCCTACGCCGCAACCCCAGGAA-CTGTCCC-CAAGAA-TG-CA-G------GAA-GTTAGCCTA-C-A-TAT--CCC--T-CGTCCG--C---TCAACATTGGAATACGGATCCTCTATCTGGGACCCC--TACCATCAAT-GCG--A-TC----------------GAGAAGATACAGCGACGA--GCAGCACGCTTCATTAAAAAGGACCACAAGTCACGGGA
gi|33308 : ACCTGGG-AATCACTAT--ATCAGACGAC-CT-GAAGTGG----A-TACTCACATCAACAACATAGTCAAGCAT-GCCAACTCTA-CATTA-GGATTCCTCCAACGAAACCTCAGGCA-CTGCCCA--AAGGACTG-TA-G------AAAGAAT-GCCTA-C-A-TAG--CGC--T-CATCAG--A---TCCAAGCTGGAGTATGGATGCACCGTCTAGGACCCT--TACCTGCAAA-GTGACA-AC---AAC--AAGCTT--GAACGTGTCCAGAGATCA--GCAGCACGCTTCATAACAAAAGACTACAGATCCCAGGA
gi|33309 : ACCTGGG-AATCACTAT--ATCGGACGAC-CT-GAAGTGG----AAAACTCACATCAACAACATAGTCAAGCGA-GCTAATTCTA-CATTG-GGATTCCTCCGACGAAACCTCAGGCA-CTACCCA--AAGGACTG-TA-G------AAA-GAACGCCTA-C-A-TAG--CGC--T-CATCAG--G---TCCAAGCTGGAATATGGATGCACCGTCTGGGACCCT--TACCTGCAAA-GTGACA----TTGAC--AAGCTC--GAACGTGTCCAAAGATCA--GCAGCACGCTTCATAACGAAAGACTACAGATCCCAGGA
gi|33310 : ATCTCGG-CATCACAAT--CTCACAAGAC-TTATCA-TGG----AACTCACACGTCGACAATATCACTAGAAAA-GCAAA-TAAA--ATTTAGGATTCCTGAGAAGGAACACAAAA-----GTTCATTCA-CA-AG-CACT------AAA-AGTTAC-TG-C-A-TATAACTC--T-AGTCAG--GCCCCCAACTC--GAATACTGCTCCTCTGTCTGGTCTCCCCATACCGAC-------ACACTCATTTACCAA--TTA--GAGGATGTACA
gi|33311 : ACCTTGG-AGTCACCAT--CACAGAAAGC-CT-CACCTGGGAGAAG----CACATAGGCAACATCACGAGCAAG-GCCAGTCGGACTCTG--GGGTTCATTCGCAGAAACCTGAGGGA-ATGCACG-CCACC--TGTCA-A------GGA-A---GCTTC-CTA-TAA--AGCCAT-GGTCCGCCC---CCAACTCGAGAATGCCG--CCACCGTCTGGGACCCA--TACCAGCTAA-ACCACG-TC---AAC--A--CTATTGAACAGGTTCAGCGCCGA--GCGGCCCGTTT
gi|33312 : TTGG-AGTAACCATTAAT---AAAACACT-CAAATGA----GACTCGTACATATGCAAAAGTAAAAAGAAA-ACGGACTCTACTATG--GGATTTCTGCGACGAAACCTAAGACA-TTGTCTT-CCGTCG-CT-CA-A------ACT-CACAGCCTA-C-AGCAC--C-C--T-AGTTAG--G---TCAGTACTCGAGTACAGCTGTACCATCTGGGACCCA--TATCTACAAA-AGAACA-TT-TCAGC--G--CTG--GAGAAGGTACAACGGTGC--GCTGCAAGATTCA
gi|33313 : TGG----GGAACCCACATTGACAACATCTGTTAAAAA-GCCAGTTCCACCTTA--GGCTTTATAAGGCGGAACCTC---CA-CT-TCAAGCCA-CA-----A-G------GAA-GTCGGCCTA-C-A-TCT--CGC--T-CGTCAG--A---TCAACACTGGAATATGGAACCATCATATGGGACCCA--TTTCTCCAGT-CGGACA----TTGAC--AAGCTG--GAGAGGATTCAAAG--GAAGGCTGCCTGATTTATCTTGCGCGACTACAgctgcttcaactacagccgacaca
gi|33314 : CACATAAATAATATCACTGGCAGA-GCTAACAAGATCCTT--TACCTTCTAAGAAGACATCT-ATACAACTGT--A---ATTACTG-TA---------AA-AATCATTTA-C-A-T----CTC--T-AGTCCG--A---CCACATCTCAAATATTCATCATCTGTCTGGGACCCC--TACT-ACAAACAGGACA-TC-TCAGC--A--CTA--GAAAAAGTTCAGCGCCGT--GGAGCATGCTTTATTACAGG
gi|33315 : A-GCCAACTCTAC-ATTA-GGATTCCTCCGAGGAAACCTTAGGCA-CTGCCCA-A-AGGACTG-TA-G------AAA-GAACGCCTA-C-A-TAG--CGC--T-CATCAG--A---TCCAAACTGGAATATGGATGCACCGTCTGGGACCCT--TACCTGCAAA-GTGACA-TC---GAC--AAGCTT--GAACATGTCCAGAGATCA--GCAGCACGCTTCATAACAAAAGACTACAGATCCCAAGA
gi|33316 : CCTTCTAAGAAGACATCT-ATACAACTGT--A---ATCA-AG-AA-GTTAAGAAAA-AATCATTTA-C-A-T----CTC--T-AGTCTG--A---CCACATCTCGAATATTCATCATCTGTCTGGGACCCC--TACT-ACAAACAGGACA-TC-TCAGC--A--CTA--GAAAAAGTTCAGCGCCGT--GGAGCACACTTTGTTACAGG
gi|33317 : CTGTCTGGGACCCC--T-TCTACAAACAGGACA-TC-TCAGT--A--CGA--GAAAAGGTTCAACGCCAT--GGAGTACGCTTTGTTACAGG
Alignments
lowQualScore : 11 11111111 1111 11
lowQualScore : 3 1 1 55 2 3 3 2 7777 2 2 44 1 1 2 1 1 2 22 11 6 2 5 66666666 2 2 777777 2 2 2 2 1111 7 2 444 33 1 3 1 3 555 0 1 7 2 9999 33 33 444 2 1 2 1 33 1 1 1
lowQualScore : . . . .. . . . . .... . . .. . . . . . . .. .. . . . ........ . . ...... . . . . .... . . ... .. . . . . ... . . . . .... .. .. ... . . . . .. . . .
lowQualScore : 6 0 0 00 3 6 6 8 1111 3 9 77 0 0 9 0 9 4 55 66 2 6 3 44444444 7 7 777777 7 1 7 7 7777 0 7 777 77 0 1 0 6 111 2 0 5 5 3333 44 88 111 2 0 7 4 77 0 0 0
consensus : ATCTTGG-AGTNACNAT--ATCNGAAGAC-CT-TAAGTGG----AGCGCCCACATCGNCAANATCNCCAAAAAA-GCNAACTCGACCATT--GGCTTCCTNAGAAGGAACCTNAGACA-CTGTCCA-CCATCA-TG-CA-G------AAA-AACGGCCTA-CA-TAT--CGCT-AGTCAGA---TC--AACNCTGGAATACNGNTCCACCGTCTGGGACCCC--TACCNACAAA-AGGACA-TC-TTNAC--A--CTA--GAGAAGGTNCAGCGCCGA--GCNGCNCGCTTCATNACAGGAGACTACAAGTCACGGGAC
Reference ( family-889 ) : ATCTTGG-AGTNACNAT--ATCNGAAGAC-CT-TAAGTGG----AGCGCCCACATCGNCAANATCNCCAAAAAA-GCNAACTCGACCATT--GGCTTCCTNAGAAGGAACCTNAGACA-CTGTCCA-CCATCA-TG-CA-G------AAA-AATGGCCTA-CA-TAT--CGCT-AGTCAGA---TC--AACNCTGGAATACNGNTCCACCGTCTGGGACCCC--TACCNACAAA-AGGACA-TC-TTNAC--A--CTA--GAGAAGGTNCAGCGCCGA--GCNGCNCGCTTCATNACAGGAGACTACAAGTCACGGGAC
gi|33302 : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGG----AGCGCTCACATCACCAAGATCTCCAAAAAA-GCAAACTCGACCATT--GTCTTCCTTAGAAGGAACCTAAGACA-CTGTCCA-CCATCA-TG-CA-G------AAA-AATGGCATA-CC-TGT--CACT-AGTAAGA---TC--AACCCTAGAATACTGTTCCATCGTCTGGGATCCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAGGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACGGGAC
gi|33303 : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGG----AGCGCTCACATCACCAAGATCTCCAAAAAA-GCAAACTCGACTATC--GGCTTCCTTAGAAGGAACCTAA-ACA-CTGTCCA-CCATCA-TG-CA-G------AAA-AATGGCATA-CC-TGT--CACT-AGTAAGA---TC--AACCCTAGAATACTGTTCCATCGTCTGGGATCCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAAGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACAGGAC
gi|33304 : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGG----AGCGCTCACATCACCAAGATCTCCAAAAAA-GCATACTCGACCATT--GGCTTCCTTAGAAGGAACCTAAAACA-CGGTCCA-CAATCA-TG-CA-G------ATA-AATGGCATA-CC-TGT--CACT-AGTAAGA---TC--AACCCTAGAATACTGTTCCATTGTCTAGGATCCC--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAAGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACGGGAC
gi|33305 : ATCTTGG-AGTGACAAT--ATCAGATGAC-CT-TAAGTGG----AGTGCCCACATCACCAAGATCTCAAAAAAAAGCAAACTTGACCATT--TGCTTCCTTAGAAAGAACCTAAAACA-CTGTCCA-CCATCA-TG-CA-G------AAA-AATGGCATA-CC-TGT--CACT-AGTAAGA---TC--AACCCTAGAATACTGTTCCATCCTCTACGATTCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--AAGAAAGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACGGGAC
gi|33306 : ATCTTGGGAGTGACAAC--ATCTGAAGAT-CT-TAATTGG----AGCGCCCACATCACCAAGTTCTCCAAAACA-GCAAACTCGACCATT--GTCTCCATTATAAGGAACTTGAAACA-CTGCCCA-TCATCA-TG-CA-G------GAA-AACGGCTTATCA-T-T--CACTAAGTGAGA---TC--AACCCTAGAATACCGTTCTATTATCTGGGATCCT--TATCAACAAA-AGGACA-TC-CTCAC--A--C-----AAAAAGAACAGCATCAA--GCCGTCCACTTCATAACAGGAAACTACAAGTTACGGGA
gi|33307 : ACCTTGG-AGTCACCAT--AGCCGAAGAC-CT-TCACTGG----GGAGTCCACATATTGAACATCAGCAAGAAA-GCAAACTCCACCCTA--GGCTTCCTACGCCGCAACCCCAGGAA-CTGTCCC-CAAGAA-TG-CA-G------GAA-GTTAGCCTA-CA-TAT--CCCT-CGTCCGC---TC--AACATTGGAATACGGATCCTCTATCTGGGACCCC--TACCATCAAT-GCG--A-TC----------------GAGAAGATACAGCGACGA--GCAGCACGCTTCATTAAAAAGGACCACAAGTCACGGGA
gi|33308 : ACCTGGG-AATCACTAT--ATCAGACGAC-CT-GAAGTGG----A-TACTCACATCAACAACATAGTCAAGCAT-GCCAACTCTAC-ATTA-GGATTCCTCCAACGAAACCTCAGGCA-CTGCCCA-A-AGGACTG-TA-G------AAAGAATG-CCTA-CA-TAG--CGCT-CATCAGA---TC--CAAGCTGGAGTATGGATGCACCGTCTAGGACCCT--TACCTGCAAA-GTGACA-AC---AAC--AAGCTT--GAACGTGTCCAGAGATCA--GCAGCACGCTTCATAACAAAAGACTACAGATCCCAGGA
gi|33309 : ACCTGGG-AATCACTAT--ATCGGACGAC-CT-GAAGTGG----AAAACTCACATCAACAACATAGTCAAGCGA-GCTAATTCTA-CATTG-GGATTCCTCCGACGAAACCTCAGGCA-CTACCCA--AAGGACTG-TA-G------AAA-GAACGCCTA-CA-TAG--CGCT-CATCAGG---TC--CAAGCTGGAATATGGATGCACCGTCTGGGACCCT--TACCTGCAAA-GTGACA----TTGAC--AAGCTC--GAACGTGTCCAAAGATCA--GCAGCACGCTTCATAACGAAAGACTACAGATCCCAGGA
gi|33310 : ATCTCGG-CATCACAAT--CTCACAAGAC-TTATCA-TGG----AACTCACACGTCGACAATATCACTAGAAAA-GCAAA-TAAA--ATTTAGGATTCCTGAGAAGGAACACAAAA-----GTTCATTCA-CA-AG-CACT------AAA-AGTTA-CTG-CA-TATAACTCT-AGTCAGGCCCCC--AACTC--GAATACTGCTCCTCTGTCTGGTCTCCCCATACCGAC-------ACACTCATTTACCAA--TTA--GAGGATGTACA
gi|33311 : ACCTTGG-AGTCACCAT--CACAGAAAGC-CT-CACCTGGGAGAAGC----ACATAGGCAACATCACGAGCAAG-GCCAGTCGGACTCTG--GGGTTCATTCGCAGAAACCTGAGGGA-ATGCACG-CCACC--TGTCA-A------GGA-AGCTTCCTA-TA-AAG--CCAT-GGTCCGC---CCCCAACTCGAGAATGCCG--CCACCGTCTGGGACCCA--TACCAGCTAA-ACCACG-TC---AAC--A--CTATTGAACAGGTTCAGCGCCGA--GCGGCCCGTTT
gi|33312 : TTGG-AGTAACCATTAAT---AAAACACT-CAAATGA----GACTCGTACATATGCAAAAGTAAAAAGAAA-ACGGACTCTACTATG--GGATTTCTGCGACGAAACCTAAGACA-TTGTCTT-CCGTCG-CT-CA-A------ACT-CACAGCCTA-CAGCAC--C-CT-AGTTAGG---TC--AGTACTCGAGTACAGCTGTACCATCTGGGACCCA--TATCTACAAA-AGAACA-TT-TCAGC--G--CTG--GAGAAGGTACAACGGTGC--GCTGCAAGATTCA
gi|33313 : TGG----GGAACCCACATTGACAACATCTGTTAAAAA-GCCAGTTCCACCTTA--GGCTTTATAAGGCGGAACCTC---CA-CT-TCAAGCCA-CA-----A-G------GAA-GTCGGCCTA-CA-TCT--CGCT-CGTCAGA---TC--AACACTGGAATATGGAACCATCATATGGGACCCA--TTTCTCCAGT-CGGACA----TTGAC--AAGCTG--GAGAGGATTCAAAG--GAAGGCTGCCTGATTTATCTTGCGCGACTACAgctgcttcaactacagccgacaca
gi|33314 : CACATAAATAATATCACTGGCAGA-GCTAACAAGATCCTT--TACCTTCTAAGAAGACATCT-ATACAACTGT--A---ATTACTG-TA---------AA-AATCATTTA-CA-T----CTCT-AGTCCGA---CC--ACATCTCAAATATTCATCATCTGTCTGGGACCCC--TA-CTACAAACAGGACA-TC-TCAGC--A--CTA--GAAAAAGTTCAGCGCCGT--GGAGCATGCTTTATTACAGG
gi|33315 : A-GCCAACTCTAC-ATTA-GGATTCCTCCGAGGAAACCTTAGGCA-CTGCCCA-A-AGGACTG-TA-G------AAA-GAACGCCTA-CA-TAG--CGCT-CATCAGA---TC--CAAACTGGAATATGGATGCACCGTCTGGGACCCT--TACCTGCAAA-GTGACA-TC---GAC--AAGCTT--GAACATGTCCAGAGATCA--GCAGCACGCTTCATAACAAAAGACTACAGATCCCAAGA
gi|33316 : CCTTCTAAGAAGACATCT-ATACAACTGT--A---ATCA-AG-AA-GTTAAGAAAA-AATCATTTA-CA-T----CTCT-AGTCTGA---CC--ACATCTCGAATATTCATCATCTGTCTGGGACCCC--TA-CTACAAACAGGACA-TC-TCAGC--A--CTA--GAAAAAGTTCAGCGCCGT--GGAGCACACTTTGTTACAGG
gi|33317 : CTGTCTGGGACCCC--T-TCTACAAACAGGACA-TC-TCAGT--A--CGA--GAAAAGGTTCAACGCCAT--GGAGTACGCTTTGTTACAGG
Alignments
lowQualScore : 11 11111111 1111 11
lowQualScore : 3 1 1 55 2 3 3 2 7777 2 2 44 1 1 2 1 1 2 22 11 6 2 5 66666666 2 777777 5 66 33 2 2 1111 7 2 444 33 1 3 1 3 555 0 1 7 2 9999 33 33 444 2 1 2 1 33 1 1 1
lowQualScore : . . . .. . . . . .... . . .. . . . . . . .. .. . . . ........ . ...... . .. .. . . .... . . ... .. . . . . ... . . . . .... .. .. ... . . . . .. . . .
lowQualScore : 6 0 0 00 3 6 6 8 1111 3 9 77 0 0 9 0 9 4 55 66 2 6 3 44444444 7 777777 3 33 77 7 7 7777 0 7 777 77 0 1 0 6 111 2 0 5 5 3333 44 88 111 2 0 7 4 77 0 0 0
consensus : ATCTTGG-AGTNACNAT--ATCNGAAGAC-CT-TAAGTGG----AGCGCCCACATCGNCAANATCNCCAAAAAA-GCNAACTCGACCATT--GGCTTCCTNAGAAGGAACCTNAGACA-CTGTCCA-CCATCA-TG-CAG------AAA-AACGGC--CTA-CA-TAT--CGCT-AGTCAGA---TC--AACNCTGGAATACNGNTCCACCGTCTGGGACCCC--TACCNACAAA-AGGACA-TC-TTNAC--A--CTA--GAGAAGGTNCAGCGCCGA--GCNGCNCGCTTCATNACAGGAGACTACAAGTCACGGGAC
Reference ( family-889 ) : ATCTTGG-AGTNACNAT--ATCNGAAGAC-CT-TAAGTGG----AGCGCCCACATCGNCAANATCNCCAAAAAA-GCNAACTCGACCATT--GGCTTCCTNAGAAGGAACCTNAGACA-CTGTCCA-CCATCA-TG-CAG------AAA-AACGGC--CTA-CA-TAT--CGCT-AGTCAGA---TC--AACNCTGGAATACNGNTCCACCGTCTGGGACCCC--TACCNACAAA-AGGACA-TC-TTNAC--A--CTA--GAGAAGGTNCAGCGCCGA--GCNGCNCGCTTCATNACAGGAGACTACAAGTCACGGGAC
gi|33302 : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGG----AGCGCTCACATCACCAAGATCTCCAAAAAA-GCAAACTCGACCATT--GTCTTCCTTAGAAGGAACCTAAGACA-CTGTCCA-CCATCA-TG-CAG------AAA-AATGGC--ATA-CC-TGT--CACT-AGTAAGA---TC--AACCCTAGAATACTGTTCCATCGTCTGGGATCCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAGGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACGGGAC
gi|33303 : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGG----AGCGCTCACATCACCAAGATCTCCAAAAAA-GCAAACTCGACTATC--GGCTTCCTTAGAAGGAACCTAA-ACA-CTGTCCA-CCATCA-TG-CAG------AAA-AATGGC--ATA-CC-TGT--CACT-AGTAAGA---TC--AACCCTAGAATACTGTTCCATCGTCTGGGATCCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAAGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACAGGAC
gi|33304 : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGG----AGCGCTCACATCACCAAGATCTCCAAAAAA-GCATACTCGACCATT--GGCTTCCTTAGAAGGAACCTAAAACA-CGGTCCA-CAATCA-TG-CAG------ATA-AATGGC--ATA-CC-TGT--CACT-AGTAAGA---TC--AACCCTAGAATACTGTTCCATTGTCTAGGATCCC--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAAGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACGGGAC
gi|33305 : ATCTTGG-AGTGACAAT--ATCAGATGAC-CT-TAAGTGG----AGTGCCCACATCACCAAGATCTCAAAAAAAAGCAAACTTGACCATT--TGCTTCCTTAGAAAGAACCTAAAACA-CTGTCCA-CCATCA-TG-CAG------AAA-AATGGC--ATA-CC-TGT--CACT-AGTAAGA---TC--AACCCTAGAATACTGTTCCATCCTCTACGATTCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--AAGAAAGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACGGGAC
gi|33306 : ATCTTGGGAGTGACAAC--ATCTGAAGAT-CT-TAATTGG----AGCGCCCACATCACCAAGTTCTCCAAAACA-GCAAACTCGACCATT--GTCTCCATTATAAGGAACTTGAAACA-CTGCCCA-TCATCA-TG-CAG------GAA-AACGGC--TTATCA-T-T--CACTAAGTGAGA---TC--AACCCTAGAATACCGTTCTATTATCTGGGATCCT--TATCAACAAA-AGGACA-TC-CTCAC--A--C-----AAAAAGAACAGCATCAA--GCCGTCCACTTCATAACAGGAAACTACAAGTTACGGGA
gi|33307 : ACCTTGG-AGTCACCAT--AGCCGAAGAC-CT-TCACTGG----GGAGTCCACATATTGAACATCAGCAAGAAA-GCAAACTCCACCCTA--GGCTTCCTACGCCGCAACCCCAGGAA-CTGTCCC-CAAGAA-TG-CAG------GAA-GTTAGC--CTA-CA-TAT--CCCT-CGTCCGC---TC--AACATTGGAATACGGATCCTCTATCTGGGACCCC--TACCATCAAT-GCG--A-TC----------------GAGAAGATACAGCGACGA--GCAGCACGCTTCATTAAAAAGGACCACAAGTCACGGGA
gi|33308 : ACCTGGG-AATCACTAT--ATCAGACGAC-CT-GAAGTGG----A-TACTCACATCAACAACATAGTCAAGCAT-GCCAACTCTAC-ATTA-GGATTCCTCCAACGAAACCTCAGGCA-CTGCCCA-A-AGGACTG-TAG------AAA-GAATGC--CTA-CA-TAG--CGCT-CATCAGA---TC--CAAGCTGGAGTATGGATGCACCGTCTAGGACCCT--TACCTGCAAA-GTGACA-AC---AAC--AAGCTT--GAACGTGTCCAGAGATCA--GCAGCACGCTTCATAACAAAAGACTACAGATCCCAGGA
gi|33309 : ACCTGGG-AATCACTAT--ATCGGACGAC-CT-GAAGTGG----AAAACTCACATCAACAACATAGTCAAGCGA-GCTAATTCTA-CATTG-GGATTCCTCCGACGAAACCTCAGGCA-CTACCCA--AAGGACTG-TAG------AAAGAAC-GC--CTA-CA-TAG--CGCT-CATCAGG---TC--CAAGCTGGAATATGGATGCACCGTCTGGGACCCT--TACCTGCAAA-GTGACA----TTGAC--AAGCTC--GAACGTGTCCAAAGATCA--GCAGCACGCTTCATAACGAAAGACTACAGATCCCAGGA
gi|33310 : ATCTCGG-CATCACAAT--CTCACAAGAC-TTATCA-TGG----AACTCACACGTCGACAATATCACTAGAAAA-GCAAA-TAAA--ATTTAGGATTCCTGAGAAGGAACACAAAA-----GTTCATTCA-CA-AG-CAC------TAA-AA--GTTACTG-CA-TATAACTCT-AGTCAGGCCCCC--AACTC--GAATACTGCTCCTCTGTCTGGTCTCCCCATACCGAC-------ACACTCATTTACCAA--TTA--GAGGATGTACA
gi|33311 : ACCTTGG-AGTCACCAT--CACAGAAAGC-CT-CACCTGGGAGAAGC----ACATAGGCAACATCACGAGCAAG-GCCAGTCGGACTCTG--GGGTTCATTCGCAGAAACCTGAGGGA-ATGCACG-CCACC--TGTCAA------GGA-AGCTTC--CTA-TA-AAG--CCAT-GGTCCGC---CCCCAACTCGAGAATGCCG--CCACCGTCTGGGACCCA--TACCAGCTAA-ACCACG-TC---AAC--A--CTATTGAACAGGTTCAGCGCCGA--GCGGCCCGTTT
gi|33312 : TTGG-AGTAACCATTAAT---AAAACACT-CAAATGA----GACTCGTACATATGCAAAAGTAAAAAGAAA-ACGGACTCTACTATG--GGATTTCTGCGACGAAACCTAAGACA-TTGTCTT-CCGTCG-CT-CAA------ACT-CACAGC--CTA-CAGCAC--C-CT-AGTTAGG---TC--AGTACTCGAGTACAGCTGTACCATCTGGGACCCA--TATCTACAAA-AGAACA-TT-TCAGC--G--CTG--GAGAAGGTACAACGGTGC--GCTGCAAGATTCA
gi|33313 : TGG----GGAACCCACATTGACAACATCTGTTAAAAA-GCCAGTTCCACCTTA--GGCTTTATAAGGCGGAACCTC---CA-CT-TCAAGCCA-CA-----AG------GAA-GTCGGC--CTA-CA-TCT--CGCT-CGTCAGA---TC--AACACTGGAATATGGAACCATCATATGGGACCCA--TTTCTCCAGT-CGGACA----TTGAC--AAGCTG--GAGAGGATTCAAAG--GAAGGCTGCCTGATTTATCTTGCGCGACTACAgctgcttcaactacagccgacaca
gi|33314 : CACATAAATAATATCACTGGCAGA-GCTAACAAGATCCTT--TACCTTCTAAGAAGACATCT-ATACAACTGT--A---ATTACTG-TA--------AA-AATCAT--TTA-CA-T----CTCT-AGTCCGA---CC--ACATCTCAAATATTCATCATCTGTCTGGGACCCC--TA-CTACAAACAGGACA-TC-TCAGC--A--CTA--GAAAAAGTTCAGCGCCGT--GGAGCATGCTTTATTACAGG
gi|33315 : A-GCCAACTCTAC-ATTA-GGATTCCTCCGAGGAAACCTTAGGCA-CTGCCCA-A-AGGACTG-TAG------AAAGAACG-C--CTA-CA-TAG--CGCT-CATCAGA---TC--CAAACTGGAATATGGATGCACCGTCTGGGACCCT--TACCTGCAAA-GTGACA-TC---GAC--AAGCTT--GAACATGTCCAGAGATCA--GCAGCACGCTTCATAACAAAAGACTACAGATCCCAAGA
gi|33316 : CCTTCTAAGAAGACATCT-ATACAACTGT--A---ATCA-AG-AAGTTAAGAAAA-AATCAT--TTA-CA-T----CTCT-AGTCTGA---CC--ACATCTCGAATATTCATCATCTGTCTGGGACCCC--TA-CTACAAACAGGACA-TC-TCAGC--A--CTA--GAAAAAGTTCAGCGCCGT--GGAGCACACTTTGTTACAGG
gi|33317 : CTGTCTGGGACCCC--T-TCTACAAACAGGACA-TC-TCAGT--A--CGA--GAAAAGGTTCAACGCCAT--GGAGTACGCTTTGTTACAGG
Alignments
lowQualScore : 11 11111111 1111 11
lowQualScore : 3 1 1 55 2 3 3 2 7777 2 2 44 1 1 2 1 1 2 22 11 6 2 5 66666666 2 777777 5 66 33 2 2 1111 7 2 444 33 1 3 1 3 555 0 1 7 2 9999 33 33 444 2 1 2 1 33 1 1 1
lowQualScore : . . . .. . . . . .... . . .. . . . . . . .. .. . . . ........ . ...... . .. .. . . .... . . ... .. . . . . ... . . . . .... .. .. ... . . . . .. . . .
lowQualScore : 6 0 0 00 3 6 6 8 1111 3 9 77 0 0 9 0 9 4 55 66 2 6 3 44444444 7 777777 3 33 77 7 7 7777 0 7 777 77 0 1 0 6 111 2 0 5 5 3333 44 88 111 2 0 7 4 77 0 0 0
consensus : ATCTTGG-AGTNACNAT--ATCNGAAGAC-CT-TAAGTGG----AGCGCCCACATCGNCAANATCNCCAAAAAA-GCNAACTCGACCATT--GGCTTCCTNAGAAGGAACCTNAGACA-CTGTCCA-CCATCA-TG-CAG------AAA-AACGGC--CTA-CA-TAT--CGCT-AGTCAGA---TC--AACNCTGGAATACNGNTCCACCGTCTGGGACCCC--TACCNACAAA-AGGACA-TC-TTNAC--A--CTA--GAGAAGGTNCAGCGCCGA--GCNGCNCGCTTCATNACAGGAGACTACAAGTCACGGGAC
Reference ( family-889 ) : ATCTTGG-AGTNACNAT--ATCNGAAGAC-CT-TAAGTGG----AGCGCCCACATCGNCAANATCNCCAAAAAA-GCNAACTCGACCATT--GGCTTCCTNAGAAGGAACCTNAGACA-CTGTCCA-CCATCA-TG-CAG------AAA-AACGGC--CTA-CA-TAT--CGCT-AGTCAGA---TC--AACNCTGGAATACNGNTCCACCGTCTGGGACCCC--TACCNACAAA-AGGACA-TC-TTNAC--A--CTA--GAGAAGGTNCAGCGCCGA--GCNGCNCGCTTCATNACAGGAGACTACAAGTCACGGGAC
gi|33302 : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGG----AGCGCTCACATCACCAAGATCTCCAAAAAA-GCAAACTCGACCATT--GTCTTCCTTAGAAGGAACCTAAGACA-CTGTCCA-CCATCA-TG-CAG------AAA-AATGGC--ATA-CC-TGT--CACT-AGTAAGA---TC--AACCCTAGAATACTGTTCCATCGTCTGGGATCCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAGGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACGGGAC
gi|33303 : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGG----AGCGCTCACATCACCAAGATCTCCAAAAAA-GCAAACTCGACTATC--GGCTTCCTTAGAAGGAACCTAA-ACA-CTGTCCA-CCATCA-TG-CAG------AAA-AATGGC--ATA-CC-TGT--CACT-AGTAAGA---TC--AACCCTAGAATACTGTTCCATCGTCTGGGATCCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAAGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACAGGAC
gi|33304 : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGG----AGCGCTCACATCACCAAGATCTCCAAAAAA-GCATACTCGACCATT--GGCTTCCTTAGAAGGAACCTAAAACA-CGGTCCA-CAATCA-TG-CAG------ATA-AATGGC--ATA-CC-TGT--CACT-AGTAAGA---TC--AACCCTAGAATACTGTTCCATTGTCTAGGATCCC--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAAGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACGGGAC
gi|33305 : ATCTTGG-AGTGACAAT--ATCAGATGAC-CT-TAAGTGG----AGTGCCCACATCACCAAGATCTCAAAAAAAAGCAAACTTGACCATT--TGCTTCCTTAGAAAGAACCTAAAACA-CTGTCCA-CCATCA-TG-CAG------AAA-AATGGC--ATA-CC-TGT--CACT-AGTAAGA---TC--AACCCTAGAATACTGTTCCATCCTCTACGATTCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--AAGAAAGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACGGGAC
gi|33306 : ATCTTGGGAGTGACAAC--ATCTGAAGAT-CT-TAATTGG----AGCGCCCACATCACCAAGTTCTCCAAAACA-GCAAACTCGACCATT--GTCTCCATTATAAGGAACTTGAAACA-CTGCCCA-TCATCA-TG-CAG------GAA-AACGGC--TTATCA-T-T--CACTAAGTGAGA---TC--AACCCTAGAATACCGTTCTATTATCTGGGATCCT--TATCAACAAA-AGGACA-TC-CTCAC--A--C-----AAAAAGAACAGCATCAA--GCCGTCCACTTCATAACAGGAAACTACAAGTTACGGGA
gi|33307 : ACCTTGG-AGTCACCAT--AGCCGAAGAC-CT-TCACTGG----GGAGTCCACATATTGAACATCAGCAAGAAA-GCAAACTCCACCCTA--GGCTTCCTACGCCGCAACCCCAGGAA-CTGTCCC-CAAGAA-TG-CAG------GAA-GTTAGC--CTA-CA-TAT--CCCT-CGTCCGC---TC--AACATTGGAATACGGATCCTCTATCTGGGACCCC--TACCATCAAT-GCG--A-TC----------------GAGAAGATACAGCGACGA--GCAGCACGCTTCATTAAAAAGGACCACAAGTCACGGGA
gi|33308 : ACCTGGG-AATCACTAT--ATCAGACGAC-CT-GAAGTGG----A-TACTCACATCAACAACATAGTCAAGCAT-GCCAACTCTAC-ATTA-GGATTCCTCCAACGAAACCTCAGGCA-CTGCCCA-A-AGGACTG-TAG------AAA-GAATGC--CTA-CA-TAG--CGCT-CATCAGA---TC--CAAGCTGGAGTATGGATGCACCGTCTAGGACCCT--TACCTGCAAA-GTGACA-AC---AAC--AAGCTT--GAACGTGTCCAGAGATCA--GCAGCACGCTTCATAACAAAAGACTACAGATCCCAGGA
gi|33309 : ACCTGGG-AATCACTAT--ATCGGACGAC-CT-GAAGTGG----AAAACTCACATCAACAACATAGTCAAGCGA-GCTAATTCTA-CATTG-GGATTCCTCCGACGAAACCTCAGGCA-CTACCCA--AAGGACTG-TAG------AAAGAAC-GC--CTA-CA-TAG--CGCT-CATCAGG---TC--CAAGCTGGAATATGGATGCACCGTCTGGGACCCT--TACCTGCAAA-GTGACA----TTGAC--AAGCTC--GAACGTGTCCAAAGATCA--GCAGCACGCTTCATAACGAAAGACTACAGATCCCAGGA
gi|33310 : ATCTCGG-CATCACAAT--CTCACAAGAC-TTATCA-TGG----AACTCACACGTCGACAATATCACTAGAAAA-GCAAA-TAAA--ATTTAGGATTCCTGAGAAGGAACACAAAA-----GTTCATTCA-CA-AG-CAC------TAA-AA--GTTACTG-CA-TATAACTCT-AGTCAGGCCCCC--AACTC--GAATACTGCTCCTCTGTCTGGTCTCCCCATACCGAC-------ACACTCATTTACCAA--TTA--GAGGATGTACA
gi|33311 : ACCTTGG-AGTCACCAT--CACAGAAAGC-CT-CACCTGGGAGAAGC----ACATAGGCAACATCACGAGCAAG-GCCAGTCGGACTCTG--GGGTTCATTCGCAGAAACCTGAGGGA-ATGCACG-CCACC--TGTCAA------GGA-AGCTTC--CTA-TA-AAG--CCAT-GGTCCGC---CCCCAACTCGAGAATGCCG--CCACCGTCTGGGACCCA--TACCAGCTAA-ACCACG-TC---AAC--A--CTATTGAACAGGTTCAGCGCCGA--GCGGCCCGTTT
gi|33312 : TTGG-AGTAACCATTAAT---AAAACACT-CAAATGA----GACTCGTACATATGCAAAAGTAAAAAGAAA-ACGGACTCTACTATG--GGATTTCTGCGACGAAACCTAAGACA-TTGTCTT-CCGTCG-CT-CAA------ACT-CACAGC--CTA-CAGCAC--C-CT-AGTTAGG---TC--AGTACTCGAGTACAGCTGTACCATCTGGGACCCA--TATCTACAAA-AGAACA-TT-TCAGC--G--CTG--GAGAAGGTACAACGGTGC--GCTGCAAGATTCA
gi|33313 : TGG----GGAACCCACATTGACAACATCTGTTAAAAA-GCCAGTTCCACCTTA--GGCTTTATAAGGCGGAACCTC---CA-CT-TCAAGCCA-CA-----AG------GAA-GTCGGC--CTA-CA-TCT--CGCT-CGTCAGA---TC--AACACTGGAATATGGAACCATCATATGGGACCCA--TTTCTCCAGT-CGGACA----TTGAC--AAGCTG--GAGAGGATTCAAAG--GAAGGCTGCCTGATTTATCTTGCGCGACTACAgctgcttcaactacagccgacaca
gi|33314 : CACATAAATAATATCACTGGCAGA-GCTAACAAGATCCTT--TACCTTCTAAGAAGACATCT-ATACAACTGT--A---ATTACTG-TA--------AA-AATCAT--TTA-CA-T----CTCT-AGTCCGA---CC--ACATCTCAAATATTCATCATCTGTCTGGGACCCC--TA-CTACAAACAGGACA-TC-TCAGC--A--CTA--GAAAAAGTTCAGCGCCGT--GGAGCATGCTTTATTACAGG
gi|33315 : A-GCCAACTCTAC-ATTA-GGATTCCTCCGAGGAAACCTTAGGCA-CTGCCCA-A-AGGACTG-TAG------AAAGAACG-C--CTA-CA-TAG--CGCT-CATCAGA---TC--CAAACTGGAATATGGATGCACCGTCTGGGACCCT--TACCTGCAAA-GTGACA-TC---GAC--AAGCTT--GAACATGTCCAGAGATCA--GCAGCACGCTTCATAACAAAAGACTACAGATCCCAAGA
gi|33316 : CCTTCTAAGAAGACATCT-ATACAACTGT--A---ATCA-AG-AAGTTAAGAAAA-AATCAT--TTA-CA-T----CTCT-AGTCTGA---CC--ACATCTCGAATATTCATCATCTGTCTGGGACCCC--TA-CTACAAACAGGACA-TC-TCAGC--A--CTA--GAAAAAGTTCAGCGCCGT--GGAGCACACTTTGTTACAGG
gi|33317 : CTGTCTGGGACCCC--T-TCTACAAACAGGACA-TC-TCAGT--A--CGA--GAAAAGGTTCAACGCCAT--GGAGTACGCTTTGTTACAGG
blockSeqs : G G A TA C A A G GAGA G T AC G T A A G T TA TA A A A CCATCA T TTAAGA G TG TA T G ATAA A A CCC CC C A T T CCA A C C ATTT CA AG ATT A A C A AG C C C
blockSeqs : . G A . C . . G . G T AC G T . A G C A TA A A A CAATCA . . G TG . . . GT A . . . C A T T T A C . TTT . AG A A A C A . C C C
blockSeqs : . G A . A . . G . G C AC G T . A G C G TA A A . CCATCA . . . TG . . . GT A . . . C A T T C A C . TTT . AG A A A C A . C C C
blockSeqs : . G A . T . . T . G C AC G T . A G C A TA G G . TCATCA . . . CG . . . GT A . . . C A C T T A . . TTT . AG A A A T A . C C A
blockSeqs : . C C . C . . C . G C TT C A . A C C . AC C G . CAAGAA . . . TA . . . AT C . . . A G G A T A . . CTC . . T G A A G . A A T
blockSeqs : . C T . A . . G . A T AA C G . C T C . CC C G . AAGGAC . . . AT . . . AG G . . . G G G A C T . . TTG . . C T C A C . A A A
blockSeqs : . C T . G . . G . A T AA C G . T T T . CC C A . AAGGAC . . . CT . . . AG G . . . G G G A T T . . TCA . . A T C A C . A A A
blockSeqs : . C A . A . . C . T A GA T A . A A T . GA A G . TTCACA . . . CA . . . AG T . . . T A T C T G . . TTG . . G T A C G . G C C
blockSeqs : . C C . A . . A . T G GG C A . C G C . TC G G . CCGTCG . . . CG . . . AC C . . . T C C C A A . . TCA . . G G T G G . T A T
blockSeqs : . A C . . . . . . A C TG A A . G T C . GC A T . GCCACA . . . TC . . . CT G . . . A G A A A T . . TCA . . A G A C G . T C A
blockSeqs : . . . GA C T . C C . . AA C G . AAGGAC . . . CG . . . AG T . . . A C G A A T . . TCA . . T G T A G . A A T
blockSeqs : AA T A . T G . . AA T T . CCACC . . . TC . . . T G . . . T G T A C T . . A . . A A T C C . A A T
blockSeqs : . C T . . CC . . . ATTAC . . . C . . . . T . . . A C G A T T . . A . . A T C C G . A A
blockSeqs : AA . . . ATCA . . . . . . . . . . . . T . T . C T . . G . . . A T . A . A A
blockSeqs : C T . . . . . . G T
blockSeqCons :
originalCons : ATCTTGG-AGTNACNAT--ATCNGAAGAC-CT-TAAGTGG----AGCGCCCACATCGNCAANATCNCCAAAAAA-GCNAACTCGACCATT--GGCTTCCTNAGAAGGAACCTNAGACA-CTGTCCA-CCATCA-TG-CAG------AAA-AACGGC--CTA-CA-TAT--CGCT-AGTCAGA---TC--AACNCTGGAATACNGNTCCACCGTCTGGGACCCC--TACCNACAAA-AGGACA-TC-TTNAC--A--CTA--GAGAAGGTNCAGCGCCGA--GCNGCNCGCTTCATNACAGGAGACTACAAGTCACGGGAC
finalCons : ATCTTGG-AGTNACNAT--ATCNGAAGAC-CT-TAAGTGG----AGCGCCCACATCGNCAANATCNCCAAAAAA-GCNAACTCGACCATT--GGCTTCCTNAGAAGGAACCTNAGACA-CTGTCCA-CCATCA-TG-CAG------AAA-AACGGC--CTA-CA-TAT--CGCT-AGTCAGA---TC--AACNCTGGAATACNGNTCCACCGTCTGGGACCCC--TACCNACAAA-AGGACA-TC-TTNAC--A--CTA--GAGAAGGTNCAGCGCCGA--GCNGCNCGCTTCATNACAGGAGACTACAAGTCACGGGAC
Alignments
lowQualScore : 11 11111111 1111 11
lowQualScore : 3 1 1 55 2 3 3 2 7777 2 2 44 1 1 2 1 1 2 22 11 6 2 5 66666666 2 777777 5 66 33 2 2 1111 7 2 444 33 1 3 1 3 555 0 1 7 2 9999 33 33 444 2 1 2 1 33 1 1 1
lowQualScore : . . . .. . . . . .... . . .. . . . . . . .. .. . . . ........ . ...... . .. .. . . .... . . ... .. . . . . ... . . . . .... .. .. ... . . . . .. . . .
lowQualScore : 6 0 0 00 3 6 6 8 1111 3 9 77 0 0 9 0 9 4 55 66 2 6 3 44444444 7 777777 3 33 77 7 7 7777 0 7 777 77 0 1 0 6 111 2 0 5 5 3333 44 88 111 2 0 7 4 77 0 0 0
consensus : ATCTTGG-AGTNACNAT--ATCNGAAGAC-CT-TAAGTGG----AGCGCCCACATCGNCAANATCNCCAAAAAA-GCNAACTCGACCATT--GGCTTCCTNAGAAGGAACCTNAGACA-CTGTCCA-CCATCA-TG-CAG------AAA-AACGGC--CTA-CA-TAT--CGCT-AGTCAGA---TC--AACNCTGGAATACNGNTCCACCGTCTGGGACCCC--TACCNACAAA-AGGACA-TC-TTNAC--A--CTA--GAGAAGGTNCAGCGCCGA--GCNGCNCGCTTCATNACAGGAGACTACAAGTCACGGGAC
Reference ( family-889 ) : ATCTTGG-AGTNACNAT--ATCNGAAGAC-CT-TAAGTGG----AGCGCCCACATCGNCAANATCNCCAAAAAA-GCNAACTCGACCATT--GGCTTCCTNAGAAGGAACCTNAGACA-CTGTCCA-CCATCA-TG-CAG------AAA-AACGGC--CTA-CA-TAT--CGCT-AGTCAGA---TC--AACNCTGGAATACNGNTCCACCGTCTGGGACCCC--TACCNACAAA-AGGACA-TC-TTNAC--A--CTA--GAGAAGGTNCAGCGCCGA--GCNGCNCGCTTCATNACAGGAGACTACAAGTCACGGGAC
gi|33302 : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGG----AGCGCTCACATCACCAAGATCTCCAAAAAA-GCAAACTCGACCATT--GTCTTCCTTAGAAGGAACCTAAGACA-CTGTCCA-CCATCA-TG-CAG------AAA-AATGGC--ATA-CC-TGT--CACT-AGTAAGA---TC--AACCCTAGAATACTGTTCCATCGTCTGGGATCCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAGGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACGGGAC
gi|33303 : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGG----AGCGCTCACATCACCAAGATCTCCAAAAAA-GCAAACTCGACTATC--GGCTTCCTTAGAAGGAACCTAA-ACA-CTGTCCA-CCATCA-TG-CAG------AAA-AATGGC--ATA-CC-TGT--CACT-AGTAAGA---TC--AACCCTAGAATACTGTTCCATCGTCTGGGATCCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAAGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACAGGAC
gi|33304 : ATCTTGG-AGTGACAAT--ATCCGAAGAC-CT-TAAGTGG----AGCGCTCACATCACCAAGATCTCCAAAAAA-GCATACTCGACCATT--GGCTTCCTTAGAAGGAACCTAAAACA-CGGTCCA-CAATCA-TG-CAG------ATA-AATGGC--ATA-CC-TGT--CACT-AGTAAGA---TC--AACCCTAGAATACTGTTCCATTGTCTAGGATCCC--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--GAGAAAGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACGGGAC
gi|33305 : ATCTTGG-AGTGACAAT--ATCAGATGAC-CT-TAAGTGG----AGTGCCCACATCACCAAGATCTCAAAAAAAAGCAAACTTGACCATT--TGCTTCCTTAGAAAGAACCTAAAACA-CTGTCCA-CCATCA-TG-CAG------AAA-AATGGC--ATA-CC-TGT--CACT-AGTAAGA---TC--AACCCTAGAATACTGTTCCATCCTCTACGATTCT--TACCAACAAA-AGGACA-TC-TTTAC--A--CTA--AAGAAAGTACAGCGCCAA--GCCGTCCGCTTCATCACAGGAGACTACAAGTCACGGGAC
gi|33306 : ATCTTGGGAGTGACAAC--ATCTGAAGAT-CT-TAATTGG----AGCGCCCACATCACCAAGTTCTCCAAAACA-GCAAACTCGACCATT--GTCTCCATTATAAGGAACTTGAAACA-CTGCCCA-TCATCA-TG-CAG------GAA-AACGGC--TTATCA-T-T--CACTAAGTGAGA---TC--AACCCTAGAATACCGTTCTATTATCTGGGATCCT--TATCAACAAA-AGGACA-TC-CTCAC--A--C-----AAAAAGAACAGCATCAA--GCCGTCCACTTCATAACAGGAAACTACAAGTTACGGGA
gi|33307 : ACCTTGG-AGTCACCAT--AGCCGAAGAC-CT-TCACTGG----GGAGTCCACATATTGAACATCAGCAAGAAA-GCAAACTCCACCCTA--GGCTTCCTACGCCGCAACCCCAGGAA-CTGTCCC-CAAGAA-TG-CAG------GAA-GTTAGC--CTA-CA-TAT--CCCT-CGTCCGC---TC--AACATTGGAATACGGATCCTCTATCTGGGACCCC--TACCATCAAT-GCG--A-TC----------------GAGAAGATACAGCGACGA--GCAGCACGCTTCATTAAAAAGGACCACAAGTCACGGGA
gi|33308 : ACCTGGG-AATCACTAT--ATCAGACGAC-CT-GAAGTGG----A-TACTCACATCAACAACATAGTCAAGCAT-GCCAACTCTAC-ATTA-GGATTCCTCCAACGAAACCTCAGGCA-CTGCCCA-A-AGGACTG-TAG------AAA-GAATGC--CTA-CA-TAG--CGCT-CATCAGA---TC--CAAGCTGGAGTATGGATGCACCGTCTAGGACCCT--TACCTGCAAA-GTGACA-AC---AAC--AAGCTT--GAACGTGTCCAGAGATCA--GCAGCACGCTTCATAACAAAAGACTACAGATCCCAGGA
gi|33309 : ACCTGGG-AATCACTAT--ATCGGACGAC-CT-GAAGTGG----AAAACTCACATCAACAACATAGTCAAGCGA-GCTAATTCTA-CATTG-GGATTCCTCCGACGAAACCTCAGGCA-CTACCCA--AAGGACTG-TAG------AAAGAAC-GC--CTA-CA-TAG--CGCT-CATCAGG---TC--CAAGCTGGAATATGGATGCACCGTCTGGGACCCT--TACCTGCAAA-GTGACA----TTGAC--AAGCTC--GAACGTGTCCAAAGATCA--GCAGCACGCTTCATAACGAAAGACTACAGATCCCAGGA
gi|33310 : ATCTCGG-CATCACAAT--CTCACAAGAC-TTATCA-TGG----AACTCACACGTCGACAATATCACTAGAAAA-GCAAA-TAAA--ATTTAGGATTCCTGAGAAGGAACACAAAA-----GTTCATTCA-CA-AG-CAC------TAA-AA--GTTACTG-CA-TATAACTCT-AGTCAGGCCCCC--AACTC--GAATACTGCTCCTCTGTCTGGTCTCCCCATACCGAC-------ACACTCATTTACCAA--TTA--GAGGATGTACA
gi|33311 : ACCTTGG-AGTCACCAT--CACAGAAAGC-CT-CACCTGGGAGAAGC----ACATAGGCAACATCACGAGCAAG-GCCAGTCGGACTCTG--GGGTTCATTCGCAGAAACCTGAGGGA-ATGCACG-CCACC--TGTCAA------GGA-AGCTTC--CTA-TA-AAG--CCAT-GGTCCGC---CCCCAACTCGAGAATGCCG--CCACCGTCTGGGACCCA--TACCAGCTAA-ACCACG-TC---AAC--A--CTATTGAACAGGTTCAGCGCCGA--GCGGCCCGTTT
gi|33312 : TTGG-AGTAACCATTAAT---AAAACACT-CAAATGA----GACTCGTACATATGCAAAAGTAAAAAGAAA-ACGGACTCTACTATG--GGATTTCTGCGACGAAACCTAAGACA-TTGTCTT-CCGTCG-CT-CAA------ACT-CACAGC--CTA-CAGCAC--C-CT-AGTTAGG---TC--AGTACTCGAGTACAGCTGTACCATCTGGGACCCA--TATCTACAAA-AGAACA-TT-TCAGC--G--CTG--GAGAAGGTACAACGGTGC--GCTGCAAGATTCA
gi|33313 : TGG----GGAACCCACATTGACAACATCTGTTAAAAA-GCCAGTTCCACCTTA--GGCTTTATAAGGCGGAACCTC---CA-CT-TCAAGCCA-CA-----AG------GAA-GTCGGC--CTA-CA-TCT--CGCT-CGTCAGA---TC--AACACTGGAATATGGAACCATCATATGGGACCCA--TTTCTCCAGT-CGGACA----TTGAC--AAGCTG--GAGAGGATTCAAAG--GAAGGCTGCCTGATTTATCTTGCGCGACTACAgctgcttcaactacagccgacaca
gi|33314 : CACATAAATAATATCACTGGCAGA-GCTAACAAGATCCTT--TACCTTCTAAGAAGACATCT-ATACAACTGT--A---ATTACTG-TA--------AA-AATCAT--TTA-CA-T----CTCT-AGTCCGA---CC--ACATCTCAAATATTCATCATCTGTCTGGGACCCC--TA-CTACAAACAGGACA-TC-TCAGC--A--CTA--GAAAAAGTTCAGCGCCGT--GGAGCATGCTTTATTACAGG
gi|33315 : A-GCCAACTCTAC-ATTA-GGATTCCTCCGAGGAAACCTTAGGCA-CTGCCCA-A-AGGACTG-TAG------AAAGAACG-C--CTA-CA-TAG--CGCT-CATCAGA---TC--CAAACTGGAATATGGATGCACCGTCTGGGACCCT--TACCTGCAAA-GTGACA-TC---GAC--AAGCTT--GAACATGTCCAGAGATCA--GCAGCACGCTTCATAACAAAAGACTACAGATCCCAAGA
gi|33316 : CCTTCTAAGAAGACATCT-ATACAACTGT--A---ATCA-AG-AAGTTAAGAAAA-AATCAT--TTA-CA-T----CTCT-AGTCTGA---CC--ACATCTCGAATATTCATCATCTGTCTGGGACCCC--TA-CTACAAACAGGACA-TC-TCAGC--A--CTA--GAAAAAGTTCAGCGCCGT--GGAGCACACTTTGTTACAGG
gi|33317 : CTGTCTGGGACCCC--T-TCTACAAACAGGACA-TC-TCAGT--A--CGA--GAAAAGGTTCAACGCCAT--GGAGTACGCTTTGTTACAGG