lowQualScore : 111 11111111111 111 1111111 111
lowQualScore : 3 0 555 4 4 0 3 5 77 2 99999999999 9 5 444 33 0 0 2 7 4444444 5 000 1 8
lowQualScore : . . ... . . . . . .. . ........... . . ... .. . . . . ....... . ... . .
lowQualScore : 3 2 000 5 1 4 0 9 44 7 99999999999 4 7 444 77 6 9 9 3 5555555 7 000 4 0
consensus : TTTCTATCACTTATGACTAAA---TGTATTCCNTCCAAAGAAGTAACNATTCGACCNAATGACAAACC-NTGGTACGACT-C----A-CA-GNTANGAACAAN-TT--CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
Reference ( gi|48071 ) : TTTCTATCACTTATGACTAAA---TGTATCCCATCCAAAGAAGTAACAATTCGACCTAATGACAAACC-CTGGTACGACT-C----A-CA-GTTACGAACAAC-TT--CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48072 : TTTCTATCACTTATGACTTAA---TGTATCCCATCCAAAGAAGTAACAGTTCGACCTTATGACAAACC-CTGGTACGACT-C----A-CA-GTTACGAACAAC-TT--CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48073 : TTTCTATCACTTATGACTAAA---CGTATCCCATCCAAAGAAGTAACAATTCAATCTAATGACAAACC-CTGGTACGACT-C----G-CA-GTTACGAACAAG-TT--CAAGACAAAGAGAAAGACA-AAAGA-AAA-----TAACGAC-CAA---AAGTACAAAC-CAAAACGAT
gi|48074 : TTTCTAACACTTATGACTAAA---TGTATCCCATCCAAAGAAGTAACAATTCGACCTAATGACAAACC-CTGGTACGACT-C----A-CACCTCACGAACAAT-TT--CAAGACAAAGAAACAGACA-AGAGA-AAA-----TAGCTAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48075 : TTTTTAGTACTTGTCAAAAGA---TGCATACCATCCAAAACGGTTACTGTACGCCCCAATGATAAACC-TTGGTATGACTCC----A-CT-ATCA-GAACATA-TT--CAAAAATAAGAGATCGAC
gi|48076 : TTTCT--CACT-ATAGTTAAAATTTGTATTCCGTCAAAACTTGTTACTGTCCGCACTGATGACAAACC-TTGGTACGACT-C----T-GA-AATAAGAACATA-TT--C------AAGAGATAGGCA-AAA
gi|48077 : TATCATTTATGACGTAT---TGTATTCTTTCGAATGGAATAACTATTCGACCTAAAGACGAACC-TTGGTATGACT-C------CA----------AAT-TTTCCTAGAAAAAGGAACAGACA-A
gi|48078 : TATGGACGAG---TGTATTCCGTCCAAAGATGTAACTATTCGACCAAATGACAAACC-TTGGTACAATT-C----A-GA-AATAAGAACACA-TT--CAAGAAAACGAGACAGACA-AAGGA-CAA-----AAGC
gi|48079 : ATGGTTGAAATTTGCATAGCATCTAAATAAGTAACTGTTCGTCCAAACGACAGGCC-TTGGTTCGATT-C----AGAA-GTTA-GAACATA-TT---AAAAAATAGGGACAGACT-AAGGA-AAA-----TTGCAA
gi|48080 : TAAAACTTGCATACCATCTAAATTAGTAACTGTTCGTCCAAACGACAGGCA-TTGGTACGATT-C----G-CA-GTTATAAA-ATA-TT--TAAGAGAAATGGACTGACT-AAAGA-AAA-----GTGCAAA-TAAATCAGGTA-AGAC---AAATGAT
gi|48081 : AAA---TGTATTCCCTCCAAAGATATAACCATCAGACCTACTGACAAGCC-ATGGCACGACT-CTGAAATCA-G--ACGGACAAC-T-----AGACTACGAGACAGACA-AAGGA-CA---------CAAT-CAA------TACGAACGCAAA
gi|48082 : ---TGTATTCCTTCTAAAAAAGTACAAATTCGACCAAATGACAAATC-ATGGTATGACT-C----A-GA-AATAAGA-CGACATT--CAAGACAACGTGACAGACA-AAAG
gi|48083 : ---TGTATTCCTTCTAAAGAAGTACAAATTCGACCAAATGACAAACC-ATGGTATGACT-C----A-GA-AAAAAGA-CGACATT--CAAGACAACGTGACAGACA-AAAGACAAA---------GGC-CAT---AAGGAC
gi|48084 : ---TGTATTCCTTCTAAAGCAGTACAAATTCGACCAAATGACAAACC-ATGGTATGACT-C----A-GA-AATAAGA-CGACATT--CAAGACAACGTGACAGACA-AAAGACAAAGGCCGTAAGGACTCAA---AAG-ACAGA
gi|48085 : ---TGTATTCCTACTAAAGAAATACAAATTCGACCAAATGACAAACC-ATGGTATGACT-C----A-GA-AATAAGA-CGACATT--CAAGACAACGTGACAGACA-AAAGA-CAA-----
gi|48086 : CAATTTGTTCAAATGACAAACCACT-GTACGATT-C----A-CT-TATACGAAAAGT-TT--CAAGACAAAAAGACAGGCATAGACA-AAA-----T
Alignments
lowQualScore : 111 11 11 1111111
lowQualScore : 1 444 0 1 1 1 1 999999999 555 33 66 444 0 2 6 1111111 5 888 0 6
lowQualScore : . ... . . . . . ......... ... .. .. ... . . . ....... . ... . .
lowQualScore : 6 000 2 0 0 0 0 111111111 333 88 77 444 3 7 7 5555555 0 888 1 7
consensus : TTTCTATCACTTATGACTAAA---TGTATTCCNTCCAAAGAAGTAACNATTCGACCNAATGACAAACCNTGGTACGACTCAGAANT---A--NGA--ACANNTT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
Reference ( family-887 ) : TTTCTATCACTTATGACTAAA---TGTATTCCNTCCAAAGAAGTAACNATTCGACCNAATGACAAACCNTGGTACGACTCACAGNT---A--NGA--ACAANTT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48071 : TTTCTATCACTTATGACTAAA---TGTATCCCATCCAAAGAAGTAACAATTCGACCTAATGACAAACCCTGGTACGACTCACAGTT---A--CGA--ACAACTT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48072 : TTTCTATCACTTATGACTTAA---TGTATCCCATCCAAAGAAGTAACAGTTCGACCTTATGACAAACCCTGGTACGACTCACAGTT---A--CGA--ACAACTT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48073 : TTTCTATCACTTATGACTAAA---CGTATCCCATCCAAAGAAGTAACAATTCAATCTAATGACAAACCCTGGTACGACTCGCAGTT---A--CGA--ACAAGTT---CAAGACAAAGAGAAAGACA-AAAGA-AAA-----TAACGAC-CAA---AAGTACAAAC-CAAAACGAT
gi|48074 : TTTCTAACACTTATGACTAAA---TGTATCCCATCCAAAGAAGTAACAATTCGACCTAATGACAAACCCTGGTACGACTCACACCTC--A--CGA--ACAATTT---CAAGACAAAGAAACAGACA-AGAGA-AAA-----TAGCTAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48075 : TTTTTAGTACTTGTCAAAAGA---TGCATACCATCCAAAACGGTTACTGTACGCCCCAATGATAAACCTTGGTATGACTC-CA-CT---ATCAGA--ACATATT---CAAAAATAAGAGATCGAC
gi|48076 : TTTCT--CACT-ATAGTTAAAATTTGTATTCCGTCAAAACTTGTTACTGTCCGCACTGATGACAAACCTTGGTACGACTCTGAAAT---A--AGA--ACATATT---C------AAGAGATAGGCA-AAA
gi|48077 : TATCATTTATGACGTAT---TGTATTCTTTCGAATGGAATAACTATTCGACCTAAAGACGAACCTTGGTATGACTC------------------CAAATTTTCCTAGAAAAAGGAACAGACA-A
gi|48078 : TATGGACGAG---TGTATTCCGTCCAAAGATGTAACTATTCGACCAAATGACAAACCTTGGTACAATTCAGAAAT---A--AGA--ACACATT---CAAGAAAACGAGACAGACA-AAGGA-CAA-----AAGC
gi|48079 : ATGGTTGAAATTTGCATAGCATCTAAATAAGTAACTGTTCGTCCAAACGACAGGCCTTGGTTCGATTCAGAAGT---T--AGA--ACATATT----AAAAAATAGGGACAGACT-AAGGA-AAA-----TTGCAA
gi|48080 : TAAAACTTGCATACCATCTAAATTAGTAACTGTTCGTCCAAACGACAGGCATTGGTACGATTCGCAGTT---A--TAA--A-ATATT---TAAGAGAAATGGACTGACT-AAAGA-AAA-----GTGCAAA-TAAATCAGGTA-AGAC---AAATGAT
gi|48081 : AAA---TGTATTCCCTCCAAAGATATAACCATCAGACCTACTGACAAGCCATGGCACGACTCTGAAATCAGA--CGG--ACAACT------AGACTACGAGACAGACA-AAGGA-CA---------CAAT-CAA------TACGAACGCAAA
gi|48082 : ---TGTATTCCTTCTAAAAAAGTACAAATTCGACCAAATGACAAATCATGGTATGACTCAGAAAT---A--AGACGACA--TT---CAAGACAACGTGACAGACA-AAAG
gi|48083 : ---TGTATTCCTTCTAAAGAAGTACAAATTCGACCAAATGACAAACCATGGTATGACTCAGAAAA---A--AGACGACA--TT---CAAGACAACGTGACAGACA-AAAGACAAA---------GGC-CAT---AAGGAC
gi|48084 : ---TGTATTCCTTCTAAAGCAGTACAAATTCGACCAAATGACAAACCATGGTATGACTCAGAAAT---A--AGACGACA--TT---CAAGACAACGTGACAGACA-AAAGACAAAGGCCGTAAGGACTCAA---AAG-ACAGA
gi|48085 : ---TGTATTCCTACTAAAGAAATACAAATTCGACCAAATGACAAACCATGGTATGACTCAGAAAT---A--AGACGACA--TT---CAAGACAACGTGACAGACA-AAAGA-CAA-----
gi|48086 : CAATTTGTTCAAATGACAAACCACTGTACGATTCACTTAT---A--CGA--AAAGTTT---CAAGACAAAAAGACAGGCATAGACA-AAA-----T
Alignments
lowQualScore : 111 1111111
lowQualScore : 1 444 0 1 1 1 1 22 1 7777777 2 22 0 2 6 1111111 5 888 0 6
lowQualScore : . ... . . . . . .. . ....... . .. . . . ....... . ... . .
lowQualScore : 6 000 2 0 0 0 0 66 0 9999999 5 99 3 7 7 5555555 0 888 1 7
consensus : TTTCTATCACTTATGACTAAA---TGTATTCCNTCCAAAGAAGTAACNATTCGACCNAATGACAAACCNTGGTACGACTCAGAANT---A--NGAACANATTCAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
Reference ( family-887 ) : TTTCTATCACTTATGACTAAA---TGTATTCCNTCCAAAGAAGTAACNATTCGACCNAATGACAAACCNTGGTACGACTCAGAANT---A--NGAACANNTTCAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48071 : TTTCTATCACTTATGACTAAA---TGTATCCCATCCAAAGAAGTAACAATTCGACCTAATGACAAACCCTGGTACGACTCACAGTT---A--CGAACAACTTCAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48072 : TTTCTATCACTTATGACTTAA---TGTATCCCATCCAAAGAAGTAACAGTTCGACCTTATGACAAACCCTGGTACGACTCACAGTT---A--CGAACAACTTCAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48073 : TTTCTATCACTTATGACTAAA---CGTATCCCATCCAAAGAAGTAACAATTCAATCTAATGACAAACCCTGGTACGACTCGCAGTT---A--CGAACAAGTTCAAGACAAAGAGAAAGACA-AAAGA-AAA-----TAACGAC-CAA---AAGTACAAAC-CAAAACGAT
gi|48074 : TTTCTAACACTTATGACTAAA---TGTATCCCATCCAAAGAAGTAACAATTCGACCTAATGACAAACCCTGGTACGACTCACACCTC--A--CGAACAATTTCAAGACAAAGAAACAGACA-AGAGA-AAA-----TAGCTAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48075 : TTTTTAGTACTTGTCAAAAGA---TGCATACCATCCAAAACGGTTACTGTACGCCCCAATGATAAACCTTGGTATGACTC--CACT---ATCAGAACATATTCAAAAATAAGAGATCGAC
gi|48076 : TTTCT--CACT-ATAGTTAAAATTTGTATTCCGTCAAAACTTGTTACTGTCCGCACTGATGACAAACCTTGGTACGACTCTGAAAT---A--AGAACATATTC------AAGAGATAGGCA-AAA
gi|48077 : TATCATTTATGACGTAT---TGTATTCTTTCGAATGGAATAACTATTCGACCTAAAGACGAACCTTGGTATGACTCCAAATT-------------TTCCTAGAAAAAGGAACAGACA-A
gi|48078 : TATGGACGAG---TGTATTCCGTCCAAAGATGTAACTATTCGACCAAATGACAAACCTTGGTACAATTCAGAAAT---A--AGAACACATTCAAGAAAACGAGACAGACA-AAGGA-CAA-----AAGC
gi|48079 : ATGGTTGAAATTTGCATAGCATCTAAATAAGTAACTGTTCGTCCAAACGACAGGCCTTGGTTCGATTCAGAAGT---T--AGAACATATT-AAAAAATAGGGACAGACT-AAGGA-AAA-----TTGCAA
gi|48080 : TAAAACTTGCATACCATCTAAATTAGTAACTGTTCGTCCAAACGACAGGCATTGGTACGATTCGCAGTT---A--TAAA-ATATTTAAGAGAAATGGACTGACT-AAAGA-AAA-----GTGCAAA-TAAATCAGGTA-AGAC---AAATGAT
gi|48081 : AAA---TGTATTCCCTCCAAAGATATAACCATCAGACCTACTGACAAGCCATGGCACGACTCTGAAATCAGA--CGGACAACT---AGACTACGAGACAGACA-AAGGA-CA---------CAAT-CAA------TACGAACGCAAA
gi|48082 : ---TGTATTCCTTCTAAAAAAGTACAAATTCGACCAAATGACAAATCATGGTATGACTCAGAAAT---A--AGACGACATTCAAGACAACGTGACAGACA-AAAG
gi|48083 : ---TGTATTCCTTCTAAAGAAGTACAAATTCGACCAAATGACAAACCATGGTATGACTCAGAAAA---A--AGACGACATTCAAGACAACGTGACAGACA-AAAGACAAA---------GGC-CAT---AAGGAC
gi|48084 : ---TGTATTCCTTCTAAAGCAGTACAAATTCGACCAAATGACAAACCATGGTATGACTCAGAAAT---A--AGACGACATTCAAGACAACGTGACAGACA-AAAGACAAAGGCCGTAAGGACTCAA---AAG-ACAGA
gi|48085 : ---TGTATTCCTACTAAAGAAATACAAATTCGACCAAATGACAAACCATGGTATGACTCAGAAAT---A--AGACGACATTCAAGACAACGTGACAGACA-AAAGA-CAA-----
gi|48086 : CAATTTGTTCAAATGACAAACCACTGTACGATTCACTTAT---A--CGAAAAGTTTCAAGACAAAAAGACAGGCATAGACA-AAA-----T
Alignments
lowQualScore : 111 1111111
lowQualScore : 1 444 0 1 1 1 1 44 1 666 555 0 1 444 0 2 6 1111111 5 888 0 6
lowQualScore : . ... . . . . . .. . ... ... . . ... . . . ....... . ... . .
lowQualScore : 6 000 2 0 0 0 0 88 9 999 333 9 0 444 3 7 7 5555555 0 888 1 7
consensus : TTTCTATCACTTATGACTAAA---TGTATTCCNTCCAAAGAAGTAACNATTCGACCNAATGACAAACCNTGGTACGACTCAGAANT---A--NGAACANATT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
Reference ( family-887 ) : TTTCTATCACTTATGACTAAA---TGTATTCCNTCCAAAGAAGTAACNATTCGACCNAATGACAAACCNTGGTACGACTCAGAANT---A--NGAACANATT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48071 : TTTCTATCACTTATGACTAAA---TGTATCCCATCCAAAGAAGTAACAATTCGACCTAATGACAAACCCTGGTACGACTCACAGTT---A--CGAACAACTT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48072 : TTTCTATCACTTATGACTTAA---TGTATCCCATCCAAAGAAGTAACAGTTCGACCTTATGACAAACCCTGGTACGACTCACAGTT---A--CGAACAACTT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48073 : TTTCTATCACTTATGACTAAA---CGTATCCCATCCAAAGAAGTAACAATTCAATCTAATGACAAACCCTGGTACGACTCGCAGTT---A--CGAACAAGTT---CAAGACAAAGAGAAAGACA-AAAGA-AAA-----TAACGAC-CAA---AAGTACAAAC-CAAAACGAT
gi|48074 : TTTCTAACACTTATGACTAAA---TGTATCCCATCCAAAGAAGTAACAATTCGACCTAATGACAAACCCTGGTACGACTCACACCTC--A--CGAACAATTT---CAAGACAAAGAAACAGACA-AGAGA-AAA-----TAGCTAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48075 : TTTTTAGTACTTGTCAAAAGA---TGCATACCATCCAAAACGGTTACTGTACGCCCCAATGATAAACCTTGGTATGACTC--CACT---ATCAGAACATATT---CAAAAATAAGAGATCGAC
gi|48076 : TTTCT--CACT-ATAGTTAAAATTTGTATTCCGTCAAAACTTGTTACTGTCCGCACTGATGACAAACCTTGGTACGACTCTGAAAT---A--AGAACATATT---C------AAGAGATAGGCA-AAA
gi|48077 : TATCATTTATGACGTAT---TGTATTCTTTCGAATGGAATAACTATTCGACCTAAAGACGAACCTTGGTATGACTC----------------CAAATTTTCCTAGAAAAAGGAACAGACA-A
gi|48078 : TATGGACGAG---TGTATTCCGTCCAAAGATGTAACTATTCGACCAAATGACAAACCTTGGTACAATTCAGAAAT---A--AGAACACATT---CAAGAAAACGAGACAGACA-AAGGA-CAA-----AAGC
gi|48079 : ATGGTTGAAATTTGCATAGCATCTAAATAAGTAACTGTTCGTCCAAACGACAGGCCTTGGTTCGATTCAGAAGT---T--AGAACATATT----AAAAAATAGGGACAGACT-AAGGA-AAA-----TTGCAA
gi|48080 : TAAAACTTGCATACCATCTAAATTAGTAACTGTTCGTCCAAACGACAGGCATTGGTACGATTCGCAGTT---A--TAAA-ATATT---TAAGAGAAATGGACTGACT-AAAGA-AAA-----GTGCAAA-TAAATCAGGTA-AGAC---AAATGAT
gi|48081 : AAA---TGTATTCCCTCCAAAGATATAACCATCAGACCTACTGACAAGCCATGGCACGACTCTGAAATCAGA--CGGACAACT------AGACTACGAGACAGACA-AAGGA-CA---------CAAT-CAA------TACGAACGCAAA
gi|48082 : ---TGTATTCCTTCTAAAAAAGTACAAATTCGACCAAATGACAAATCATGGTATGACTCAGAAAT---A--AGACGACATT---CAAGACAACGTGACAGACA-AAAG
gi|48083 : ---TGTATTCCTTCTAAAGAAGTACAAATTCGACCAAATGACAAACCATGGTATGACTCAGAAAA---A--AGACGACATT---CAAGACAACGTGACAGACA-AAAGACAAA---------GGC-CAT---AAGGAC
gi|48084 : ---TGTATTCCTTCTAAAGCAGTACAAATTCGACCAAATGACAAACCATGGTATGACTCAGAAAT---A--AGACGACATT---CAAGACAACGTGACAGACA-AAAGACAAAGGCCGTAAGGACTCAA---AAG-ACAGA
gi|48085 : ---TGTATTCCTACTAAAGAAATACAAATTCGACCAAATGACAAACCATGGTATGACTCAGAAAT---A--AGACGACATT---CAAGACAACGTGACAGACA-AAAGA-CAA-----
gi|48086 : CAATTTGTTCAAATGACAAACCACTGTACGATTCACTTAT---A--CGAAAAGTTT---CAAGACAAAAAGACAGGCATAGACA-AAA-----T
Alignments
lowQualScore : 111 1111111
lowQualScore : 1 444 0 1 1 1 1 44 1 666 555 0 1 444 0 2 6 1111111 5 888 0 6
lowQualScore : . ... . . . . . .. . ... ... . . ... . . . ....... . ... . .
lowQualScore : 6 000 2 0 0 0 0 88 9 999 333 9 0 444 3 7 7 5555555 0 888 1 7
consensus : TTTCTATCACTTATGACTAAA---TGTATTCCNTCCAAAGAAGTAACNATTCGACCNAATGACAAACCNTGGTACGACTCAGAANT---A--NGAACANATT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
Reference ( family-887 ) : TTTCTATCACTTATGACTAAA---TGTATTCCNTCCAAAGAAGTAACNATTCGACCNAATGACAAACCNTGGTACGACTCAGAANT---A--NGAACANATT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48071 : TTTCTATCACTTATGACTAAA---TGTATCCCATCCAAAGAAGTAACAATTCGACCTAATGACAAACCCTGGTACGACTCACAGTT---A--CGAACAACTT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48072 : TTTCTATCACTTATGACTTAA---TGTATCCCATCCAAAGAAGTAACAGTTCGACCTTATGACAAACCCTGGTACGACTCACAGTT---A--CGAACAACTT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48073 : TTTCTATCACTTATGACTAAA---CGTATCCCATCCAAAGAAGTAACAATTCAATCTAATGACAAACCCTGGTACGACTCGCAGTT---A--CGAACAAGTT---CAAGACAAAGAGAAAGACA-AAAGA-AAA-----TAACGAC-CAA---AAGTACAAAC-CAAAACGAT
gi|48074 : TTTCTAACACTTATGACTAAA---TGTATCCCATCCAAAGAAGTAACAATTCGACCTAATGACAAACCCTGGTACGACTCACACCTC--A--CGAACAATTT---CAAGACAAAGAAACAGACA-AGAGA-AAA-----TAGCTAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48075 : TTTTTAGTACTTGTCAAAAGA---TGCATACCATCCAAAACGGTTACTGTACGCCCCAATGATAAACCTTGGTATGACTC--CACT---ATCAGAACATATT---CAAAAATAAGAGATCGAC
gi|48076 : TTTCT--CACT-ATAGTTAAAATTTGTATTCCGTCAAAACTTGTTACTGTCCGCACTGATGACAAACCTTGGTACGACTCTGAAAT---A--AGAACATATT---C------AAGAGATAGGCA-AAA
gi|48077 : TATCATTTATGACGTAT---TGTATTCTTTCGAATGGAATAACTATTCGACCTAAAGACGAACCTTGGTATGACTC----------------CAAATTTTCCTAGAAAAAGGAACAGACA-A
gi|48078 : TATGGACGAG---TGTATTCCGTCCAAAGATGTAACTATTCGACCAAATGACAAACCTTGGTACAATTCAGAAAT---A--AGAACACATT---CAAGAAAACGAGACAGACA-AAGGA-CAA-----AAGC
gi|48079 : ATGGTTGAAATTTGCATAGCATCTAAATAAGTAACTGTTCGTCCAAACGACAGGCCTTGGTTCGATTCAGAAGT---T--AGAACATATT----AAAAAATAGGGACAGACT-AAGGA-AAA-----TTGCAA
gi|48080 : TAAAACTTGCATACCATCTAAATTAGTAACTGTTCGTCCAAACGACAGGCATTGGTACGATTCGCAGTT---A--TAAA-ATATT---TAAGAGAAATGGACTGACT-AAAGA-AAA-----GTGCAAA-TAAATCAGGTA-AGAC---AAATGAT
gi|48081 : AAA---TGTATTCCCTCCAAAGATATAACCATCAGACCTACTGACAAGCCATGGCACGACTCTGAAATCAGA--CGGACAACT------AGACTACGAGACAGACA-AAGGA-CA---------CAAT-CAA------TACGAACGCAAA
gi|48082 : ---TGTATTCCTTCTAAAAAAGTACAAATTCGACCAAATGACAAATCATGGTATGACTCAGAAAT---A--AGACGACATT---CAAGACAACGTGACAGACA-AAAG
gi|48083 : ---TGTATTCCTTCTAAAGAAGTACAAATTCGACCAAATGACAAACCATGGTATGACTCAGAAAA---A--AGACGACATT---CAAGACAACGTGACAGACA-AAAGACAAA---------GGC-CAT---AAGGAC
gi|48084 : ---TGTATTCCTTCTAAAGCAGTACAAATTCGACCAAATGACAAACCATGGTATGACTCAGAAAT---A--AGACGACATT---CAAGACAACGTGACAGACA-AAAGACAAAGGCCGTAAGGACTCAA---AAG-ACAGA
gi|48085 : ---TGTATTCCTACTAAAGAAATACAAATTCGACCAAATGACAAACCATGGTATGACTCAGAAAT---A--AGACGACATT---CAAGACAACGTGACAGACA-AAAGA-CAA-----
gi|48086 : CAATTTGTTCAAATGACAAACCACTGTACGATTCACTTAT---A--CGAAAAGTTT---CAAGACAAAAAGACAGGCATAGACA-AAA-----T
blockSeqs : T ATT A A T C AC T CAG TCA A TTC T C GGCCGTA T ATC G
blockSeqs : T ATT A A T C GC T C C A . . C TA . . .
blockSeqs : A ACT A A T C AC C . C A . . . TA . . .
blockSeqs : G . A T C T TG C . C T . . . TA . . .
blockSeqs : T . G T T T AG A . A T . . . AA . . .
blockSeqs : . . T T T T AG A . A A . . . TT . .
blockSeqs : . G T A T GC G . A C . . . GT . .
blockSeqs : . A T A T TG T . T T . . . .
blockSeqs : . A T A T AG A . C T . . . .
blockSeqs : . C C T A AG A . A A . . .
blockSeqs : . T A A A AG A . A C . . .
blockSeqs : . T A A A AG A . A C . .
blockSeqs : . T A A A AC A . A C . .
blockSeqs : . T A A A . A . C C . .
blockSeqs : A A A . . . . G .
blockSeqCons :
originalCons : TTTCTATCACTTATGACTAAA---TGTATTCCNTCCAAAGAAGTAACNATTCGACCNAATGACAAACCNTGGTACGACTCAGAANT---A--NGAACANATT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
finalCons : TTTCTATCACTTATGACTAAA---TGTATTCCNTCCAAAGAAGTAACNATTCGACCNAATGACAAACCNTGGTACGACTCAGAANT---A--NGAACANATT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
Alignments
lowQualScore : 111 1111111
lowQualScore : 1 444 0 1 1 1 1 44 1 666 555 0 1 444 0 2 6 1111111 5 888 0 6
lowQualScore : . ... . . . . . .. . ... ... . . ... . . . ....... . ... . .
lowQualScore : 6 000 2 0 0 0 0 88 9 999 333 9 0 444 3 7 7 5555555 0 888 1 7
consensus : TTTCTATCACTTATGACTAAA---TGTATTCCNTCCAAAGAAGTAACNATTCGACCNAATGACAAACCNTGGTACGACTCAGAANT---A--NGAACANATT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
Reference ( family-887 ) : TTTCTATCACTTATGACTAAA---TGTATTCCNTCCAAAGAAGTAACNATTCGACCNAATGACAAACCNTGGTACGACTCAGAANT---A--NGAACANATT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48071 : TTTCTATCACTTATGACTAAA---TGTATCCCATCCAAAGAAGTAACAATTCGACCTAATGACAAACCCTGGTACGACTCACAGTT---A--CGAACAACTT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48072 : TTTCTATCACTTATGACTTAA---TGTATCCCATCCAAAGAAGTAACAGTTCGACCTTATGACAAACCCTGGTACGACTCACAGTT---A--CGAACAACTT---CAAGACAAAGAGACAGACA-AAAGA-AAA-----TAGCGAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48073 : TTTCTATCACTTATGACTAAA---CGTATCCCATCCAAAGAAGTAACAATTCAATCTAATGACAAACCCTGGTACGACTCGCAGTT---A--CGAACAAGTT---CAAGACAAAGAGAAAGACA-AAAGA-AAA-----TAACGAC-CAA---AAGTACAAAC-CAAAACGAT
gi|48074 : TTTCTAACACTTATGACTAAA---TGTATCCCATCCAAAGAAGTAACAATTCGACCTAATGACAAACCCTGGTACGACTCACACCTC--A--CGAACAATTT---CAAGACAAAGAAACAGACA-AGAGA-AAA-----TAGCTAC-CAA---AAGTACAAAC-CAAAATGAT
gi|48075 : TTTTTAGTACTTGTCAAAAGA---TGCATACCATCCAAAACGGTTACTGTACGCCCCAATGATAAACCTTGGTATGACTC--CACT---ATCAGAACATATT---CAAAAATAAGAGATCGAC
gi|48076 : TTTCT--CACT-ATAGTTAAAATTTGTATTCCGTCAAAACTTGTTACTGTCCGCACTGATGACAAACCTTGGTACGACTCTGAAAT---A--AGAACATATT---C------AAGAGATAGGCA-AAA
gi|48077 : TATCATTTATGACGTAT---TGTATTCTTTCGAATGGAATAACTATTCGACCTAAAGACGAACCTTGGTATGACTC----------------CAAATTTTCCTAGAAAAAGGAACAGACA-A
gi|48078 : TATGGACGAG---TGTATTCCGTCCAAAGATGTAACTATTCGACCAAATGACAAACCTTGGTACAATTCAGAAAT---A--AGAACACATT---CAAGAAAACGAGACAGACA-AAGGA-CAA-----AAGC
gi|48079 : ATGGTTGAAATTTGCATAGCATCTAAATAAGTAACTGTTCGTCCAAACGACAGGCCTTGGTTCGATTCAGAAGT---T--AGAACATATT----AAAAAATAGGGACAGACT-AAGGA-AAA-----TTGCAA
gi|48080 : TAAAACTTGCATACCATCTAAATTAGTAACTGTTCGTCCAAACGACAGGCATTGGTACGATTCGCAGTT---A--TAAA-ATATT---TAAGAGAAATGGACTGACT-AAAGA-AAA-----GTGCAAA-TAAATCAGGTA-AGAC---AAATGAT
gi|48081 : AAA---TGTATTCCCTCCAAAGATATAACCATCAGACCTACTGACAAGCCATGGCACGACTCTGAAATCAGA--CGGACAACT------AGACTACGAGACAGACA-AAGGA-CA---------CAAT-CAA------TACGAACGCAAA
gi|48082 : ---TGTATTCCTTCTAAAAAAGTACAAATTCGACCAAATGACAAATCATGGTATGACTCAGAAAT---A--AGACGACATT---CAAGACAACGTGACAGACA-AAAG
gi|48083 : ---TGTATTCCTTCTAAAGAAGTACAAATTCGACCAAATGACAAACCATGGTATGACTCAGAAAA---A--AGACGACATT---CAAGACAACGTGACAGACA-AAAGACAAA---------GGC-CAT---AAGGAC
gi|48084 : ---TGTATTCCTTCTAAAGCAGTACAAATTCGACCAAATGACAAACCATGGTATGACTCAGAAAT---A--AGACGACATT---CAAGACAACGTGACAGACA-AAAGACAAAGGCCGTAAGGACTCAA---AAG-ACAGA
gi|48085 : ---TGTATTCCTACTAAAGAAATACAAATTCGACCAAATGACAAACCATGGTATGACTCAGAAAT---A--AGACGACATT---CAAGACAACGTGACAGACA-AAAGA-CAA-----
gi|48086 : CAATTTGTTCAAATGACAAACCACTGTACGATTCACTTAT---A--CGAAAAGTTT---CAAGACAAAAAGACAGGCATAGACA-AAA-----T