lowQualScore                  :                                                  111                              
lowQualScore                  :      444                                         666  5  44                       
lowQualScore                  :      ...                                         ...  .  ..                       
lowQualScore                  :      888                                         222  3  11                       
consensus                     : ATTTCG--ATGGTACCCTGCGCCATATTGCGTTGTACTGACTTGTTTCAT--TT-TG-AACAGAGTACCTAACAGGAAATCA
Reference ( gi|21736 )        : ATTTTG--ATGGTACCCTGCGCCATATTGCGTTGTATTGACTTGTTTCAC--TT-TG-AACAGAGTACCTAACAGGAAATCA
gi|21737                      : ATTTTG--ATGGTATCCTGTACCATATTGCATTGTATTGACTTGTTTCAT--TT-TG-AACAGAGTACCTAACAGGAAATCA
gi|21738                      : ATTTTG--ATGGTACCCTGCGCCATATTGCGTTTTATTGACTTGTTTAAT--TT-TG-AACAGAGTACCTAACAGGAAAT
gi|21739                      : ATTTTG--ATGGTACCCTGCGCAATATCGCGTTGTATTGACTTGTTTCAT--TT-TG-AACAGAGTATCTAACAGAAATTCA
gi|21741                      : ATTTTT--ATGGTACCCTGTGCCATTTTGCGTTGCATTGACTTGTTTCAT--TT-TG-AATACAGTACCTAACAGAAAATCA
gi|21740                      : ATTGTT--ATGGTACCCTGCGTCATATTGCGTTGCATTGACTTGTTTCATCATTATA-AATAGAGTACCTAACAGGAAATCA
gi|21742                      : ATTTTG--CTGGTACCCTTTGCCATATTGCGTTGTTTTGACTTGTTTCAT--TT-TG-AACAGAGT-----ACAGGAAATCA
gi|21743                      : ATTTCT--ATGGGACCCTGAGCCATATGGCGTTGT----ACTTGCTCCAT--TT-TG-TACAGGGTACTTAACAAGAAAT
gi|21744                      : ATTTCA--ATGGTATCCTGTGTCATATTCCGTTGTACAGA-TTGGTTTAT--GT-TA-TACATGGTACCTGACAGGAAAT
gi|21745                      : ATTTCT--GTGGTACCCTGTGCCATATAGAGTTGTGCTGACTTGTTTTAT--TT-TA-TACAAA
gi|21747                      :  TTTTG--ATGGTACC-TACGCCATATTGCAATGTACTGACTTGTTTAAT--TT-TG-TACAGAGTATCTAATAGGATAT
gi|21746                      :  TTTTGTAATGGTACCTTGCATCAAGTTGCATTGCATTGACTTGTTTCATCATTATA-AATAGAGTACCTAACAGGAAATTA
gi|21748                      :       --ATGGTACTCTGTGCCATATTGCGTTGTATTGACTTCT-------TT-TG-AACAGAGTAC
gi|21749                      :       --ATGGTACCC--CGCAATAATGCGTTGTACTGACTTGTTTTA----T-TGTAACAG-GTA
gi|21750                      :           GGTACCCTGTACTATAATGCGTTATACTAACATGTCTTAT--GT-TG-TACAGGGTACCTTACAGGAAAT
gi|21751                      :            GTACCCTGCGCTTTATTGCGTTGTACTAACTTGTTTCAT--TT-TG-TACAGGATACTAAACCGGAAAT

lowQualScore                  :           1 33                            0             66  5  0                       
lowQualScore                  :           . ..                            .             ..  .  .                       
lowQualScore                  :           6 99                            6             99  0  8                       
consensus                     :       ATTTCG--ATGGTACCCTGCGCCATATTGCGTTGTATTGACTTGTTTCAT--TT-TGAACAGAGTACCTAACAGGAAATCA
Reference ( family-883 )      :       ATTTCG--ATGGTACCCTGCGCCATATTGCGTTGTACTGACTTGTTTCAT--TT-TGAACAGAGTACCTAACAGGAAATCA
gi|21736                      :       ATTTTG--ATGGTACCCTGCGCCATATTGCGTTGTATTGACTTGTTTCAC--TT-TGAACAGAGTACCTAACAGGAAATCA
gi|21737                      :       ATTTTG--ATGGTATCCTGTACCATATTGCATTGTATTGACTTGTTTCAT--TT-TGAACAGAGTACCTAACAGGAAATCA
gi|21738                      :       ATTTTG--ATGGTACCCTGCGCCATATTGCGTTTTATTGACTTGTTTAAT--TT-TGAACAGAGTACCTAACAGGAAAT
gi|21739                      :       ATTTTG--ATGGTACCCTGCGCAATATCGCGTTGTATTGACTTGTTTCAT--TT-TGAACAGAGTATCTAACAGAAATTCA
gi|21740                      :             --ATGGTACCCTGCGTCATATTGCGTTGCATTGACTTGTTTCATCATTATAAATAGAGTACCTAACAGGAAATCA
gi|21741                      : attgttATTTTT--ATGGTACCCTGTGCCATTTTGCGTTGCATTGACTTGTTTCAT--TT-TGAATACAGTACCTAACAGAAAATCA
gi|21742                      :       ATTTTG--CTGGTACCCTTTGCCATATTGCGTTGTTTTGACTTGTTTCAT--TT-TGAACAGAGT-----ACAGGAAATCA
gi|21743                      :       ATTTCT--ATGGGACCCTGAGCCATATGGCGTTGT----ACTTGCTCCAT--TT-TGTACAGGGTACTTAACAAGAAAT
gi|21744                      :       ATTTCA--ATGGTATCCTGTGTCATATTCCGTTGTACAGA-TTGGTTTAT--GT-TATACATGGTACCTGACAGGAAAT
gi|21745                      :       ATTTCT--GTGGTACCCTGTGCCATATAGAGTTGTGCTGACTTGTTTTAT--TT-TATACAAA
gi|21746                      :        TTTTGTAATGGTACCTTGCATCAAGTTGCATTGCATTGACTTGTTTCATCATTATAAATAGAGTACCTAACAGGAAATTA
gi|21747                      :        TTTTG--ATGGTACC-TACGCCATATTGCAATGTACTGACTTGTTTAAT--TT-TGTACAGAGTATCTAATAGGATAT
gi|21748                      :             --ATGGTACTCTGTGCCATATTGCGTTGTATTGAC----TTC-T--TT-TGAACAGAGTAC
gi|21749                      :             --ATGGTACCC--CGCAATAATGCGTTGTACTGACTTGTTTTAT--TG-T-AACAG-GTA
gi|21750                      :                 GGTACCCTGTACTATAATGCGTTATACTAACATGTCTTAT--GT-TGTACAGGGTACCTTACAGGAAAT
gi|21751                      :                  GTACCCTGCGCTTTATTGCGTTGTACTAACTTGTTTCAT--TT-TGTACAGGATACTAAACCGGAAAT

lowQualScore                  :           1 33                                          66  5  0                       
lowQualScore                  :           . ..                                          ..  .  .                       
lowQualScore                  :           6 99                                          99  0  8                       
consensus                     :       ATTTCG--ATGGTACCCTGCGCCATATTGCGTTGTATTGACTTGTTTCAT--TT-TGAACAGAGTACCTAACAGGAAATCA
Reference ( family-883 )      :       ATTTCG--ATGGTACCCTGCGCCATATTGCGTTGTATTGACTTGTTTCAT--TT-TGAACAGAGTACCTAACAGGAAATCA
gi|21736                      :       ATTTTG--ATGGTACCCTGCGCCATATTGCGTTGTATTGACTTGTTTCAC--TT-TGAACAGAGTACCTAACAGGAAATCA
gi|21737                      :       ATTTTG--ATGGTATCCTGTACCATATTGCATTGTATTGACTTGTTTCAT--TT-TGAACAGAGTACCTAACAGGAAATCA
gi|21738                      :       ATTTTG--ATGGTACCCTGCGCCATATTGCGTTTTATTGACTTGTTTAAT--TT-TGAACAGAGTACCTAACAGGAAAT
gi|21739                      :       ATTTTG--ATGGTACCCTGCGCAATATCGCGTTGTATTGACTTGTTTCAT--TT-TGAACAGAGTATCTAACAGAAATTCA
gi|21740                      :             --ATGGTACCCTGCGTCATATTGCGTTGCATTGACTTGTTTCATCATTATAAATAGAGTACCTAACAGGAAATCA
gi|21741                      : attgttATTTTT--ATGGTACCCTGTGCCATTTTGCGTTGCATTGACTTGTTTCAT--TT-TGAATACAGTACCTAACAGAAAATCA
gi|21742                      :       ATTTTG--CTGGTACCCTTTGCCATATTGCGTTGTTTTGACTTGTTTCAT--TT-TGAACAGAGT-----ACAGGAAATCA
gi|21743                      :       ATTTCT--ATGGGACCCTGAGCCATATGGCGTTGTA----CTTGCTCCAT--TT-TGTACAGGGTACTTAACAAGAAAT
gi|21744                      :       ATTTCA--ATGGTATCCTGTGTCATATTCCGTTGTACAGA-TTGGTTTAT--GT-TATACATGGTACCTGACAGGAAAT
gi|21745                      :       ATTTCT--GTGGTACCCTGTGCCATATAGAGTTGTGCTGACTTGTTTTAT--TT-TATACAAA
gi|21746                      :        TTTTGTAATGGTACCTTGCATCAAGTTGCATTGCATTGACTTGTTTCATCATTATAAATAGAGTACCTAACAGGAAATTA
gi|21747                      :        TTTTG--ATGGTACC-TACGCCATATTGCAATGTACTGACTTGTTTAAT--TT-TGTACAGAGTATCTAATAGGATAT
gi|21748                      :             --ATGGTACTCTGTGCCATATTGCGTTGTATTGAC----TTC-T--TT-TGAACAGAGTAC
gi|21749                      :             --ATGGTACCC--CGCAATAATGCGTTGTACTGACTTGTTTTAT--TG-T-AACAG-GTA
gi|21750                      :                 GGTACCCTGTACTATAATGCGTTATACTAACATGTCTTAT--GT-TGTACAGGGTACCTTACAGGAAAT
gi|21751                      :                  GTACCCTGCGCTTTATTGCGTTGTACTAACTTGTTTCAT--TT-TGTACAGGATACTAAACCGGAAAT


blockSeqs                     :           T TA                                          CA  A
blockSeqs                     :           T .                                           CA  A
blockSeqs                     :           T .                                           .   .
blockSeqs                     :           T .                                           .   .
blockSeqs                     :           T .                                           .   .
blockSeqs                     :           C .                                           .   .
blockSeqs                     :           C .                                           .   .
blockSeqs                     :           C .                                           .   .
blockSeqs                     :           T .                                           .   .
blockSeqs                     :           T .                                           .   .
blockSeqs                     :             .                                           .   .
blockSeqs                     :             .                                           .   .
blockSeqs                     :             .                                           .   .
blockSeqs                     :                                                         .   .
blockSeqs                     :                                                         .   .


blockSeqCons                  :       
originalCons                  :       ATTTCG--ATGGTACCCTGCGCCATATTGCGTTGTATTGACTTGTTTCAT--TT-TGAACAGAGTACCTAACAGGAAATCA
finalCons                     :       ATTTCG--ATGGTACCCTGCGCCATATTGCGTTGTATTGACTTGTTTCAT--TT-TGAACAGAGTACCTAACAGGAAATCA

lowQualScore                  :           1 33                                          66  5  0                       
lowQualScore                  :           . ..                                          ..  .  .                       
lowQualScore                  :           6 99                                          99  0  8                       
consensus                     :       ATTTCG--ATGGTACCCTGCGCCATATTGCGTTGTATTGACTTGTTTCAT--TT-TGAACAGAGTACCTAACAGGAAATCA
Reference ( family-883 )      :       ATTTCG--ATGGTACCCTGCGCCATATTGCGTTGTATTGACTTGTTTCAT--TT-TGAACAGAGTACCTAACAGGAAATCA
gi|21736                      :       ATTTTG--ATGGTACCCTGCGCCATATTGCGTTGTATTGACTTGTTTCAC--TT-TGAACAGAGTACCTAACAGGAAATCA
gi|21737                      :       ATTTTG--ATGGTATCCTGTACCATATTGCATTGTATTGACTTGTTTCAT--TT-TGAACAGAGTACCTAACAGGAAATCA
gi|21738                      :       ATTTTG--ATGGTACCCTGCGCCATATTGCGTTTTATTGACTTGTTTAAT--TT-TGAACAGAGTACCTAACAGGAAAT
gi|21739                      :       ATTTTG--ATGGTACCCTGCGCAATATCGCGTTGTATTGACTTGTTTCAT--TT-TGAACAGAGTATCTAACAGAAATTCA
gi|21740                      :             --ATGGTACCCTGCGTCATATTGCGTTGCATTGACTTGTTTCATCATTATAAATAGAGTACCTAACAGGAAATCA
gi|21741                      : attgttATTTTT--ATGGTACCCTGTGCCATTTTGCGTTGCATTGACTTGTTTCAT--TT-TGAATACAGTACCTAACAGAAAATCA
gi|21742                      :       ATTTTG--CTGGTACCCTTTGCCATATTGCGTTGTTTTGACTTGTTTCAT--TT-TGAACAGAGT-----ACAGGAAATCA
gi|21743                      :       ATTTCT--ATGGGACCCTGAGCCATATGGCGTTGTA----CTTGCTCCAT--TT-TGTACAGGGTACTTAACAAGAAAT
gi|21744                      :       ATTTCA--ATGGTATCCTGTGTCATATTCCGTTGTACAGA-TTGGTTTAT--GT-TATACATGGTACCTGACAGGAAAT
gi|21745                      :       ATTTCT--GTGGTACCCTGTGCCATATAGAGTTGTGCTGACTTGTTTTAT--TT-TATACAAA
gi|21746                      :        TTTTGTAATGGTACCTTGCATCAAGTTGCATTGCATTGACTTGTTTCATCATTATAAATAGAGTACCTAACAGGAAATTA
gi|21747                      :        TTTTG--ATGGTACC-TACGCCATATTGCAATGTACTGACTTGTTTAAT--TT-TGTACAGAGTATCTAATAGGATAT
gi|21748                      :             --ATGGTACTCTGTGCCATATTGCGTTGTATTGAC----TTC-T--TT-TGAACAGAGTAC
gi|21749                      :             --ATGGTACCC--CGCAATAATGCGTTGTACTGACTTGTTTTAT--TG-T-AACAG-GTA
gi|21750                      :                 GGTACCCTGTACTATAATGCGTTATACTAACATGTCTTAT--GT-TGTACAGGGTACCTTACAGGAAAT
gi|21751                      :                  GTACCCTGCGCTTTATTGCGTTGTACTAACTTGTTTCAT--TT-TGTACAGGATACTAAACCGGAAAT