lowQualScore : 7777
lowQualScore : 4 0 5555 2
lowQualScore : . . .... .
lowQualScore : 9 5 2222 5
consensus : TTGTGAGGTACAAACCGTAATAACCGGGAACCGGTTTATCTGGCTGTTTCCTGTT----TACCGAAATACAGGAAATGTGAAACAGCTGTTT
Reference ( gi|27943 ) : TTGTGAGGTACAAACCGTAATAACCAGGAACCGGTTTATCTGGCTGTTTCCTGTTTTAATACTGAAATACAGGAAATGTGAAACAGCTGTTT
gi|27944 : TTGTGAGGTACAAACTGTAATGACCGGAAACCGGTTTATCTGGTTGTTTCTTGTT----TATCGAAATACAGGAAATGTGGAACAGATGTTT
gi|27945 : TTGTGAGGTACAAACTATAGTAACCAGGAACAGGTTTATATGGCTGTTTCCTGTT----TATCGAAATACAGGAAATGTGAAACAACTG
gi|27947 : TTGTGAGGTACAAATCGTAATAACTGGCAACTGGTTTATTTGGCCTTTTCCTGTT----TACTTAAATACTGGAAATGTGAAACAGCTGTTT
gi|27946 : TTGTGAGGTACAAACCGTAATTAACGGGAACCGATTTATCTGACAGTTTC--ACTTT--TATCAAAATACAGGAAATGTGAAACAGCTGTTT
gi|27949 : TTGTGAGGTATAAACCATAATAACCGGTAACTGGTTTATCT-GCTGTTTCCT----------TG-AATACAGGAAGTGTGAAACAGCTGTTT
gi|27948 : TTGTGAGGCATGAATCGTAATAACTGGGAACCAGTTTATCTCGCTA-TTCGTGTT----TACCGAAATAAAGGAAATATGAAACAGCTGTTT
gi|27950 : TTCTGAGGTACAAAAAGTAATAACCGGGAACCGGTTTATCCGGCTATTTCCTGTT----TATTGAAATACTAGAAATGT
gi|27951 : TTGTGAGGCACAAACTGCAATAACCGGGTACCGGTTTATCTGGCTGTGTCATGTT----TACTGAAATA---------TGAAACAGTTCTTT
gi|27952 : TTTTGAGGTACAAAT-G-AACAGCTGGGAACCAGTTTATCAGGCTGTCT-----------ACCGAAATACTGGAAATGTCTAACAGCTGTTT
gi|27953 : TGTGAGATACAAACCGTAATAATGGAGAACTGGTTTGTCTCGCTGTTTCCTGTT----TACCGAAATACAGGAAATATGAAACAGCTATTT
gi|27954 : GTCAGGTACAAATTGTAATAACTGGGTACCTGTTTATCTTACTGTTTCCTGTT----TACTGAAATATAAGAAATATAAAACAGCTCTTT
gi|27955 : GGTACAAACCATTACAACTGGGAAACTGTTTATCTTGCTGTGTTCTGTT----TATCAAAATACAGGAAATGTGAAACAGCTGTTT
gi|27956 : GTACAAACCGTAGTAACCGGGAACTGGTTTATCTGGCTGTTTCTTGTT----TATCGAAATACAGGAAATGTGAAACAGCTGTTT
gi|27957 : AACCCTAATAACTGGGGACCTGTTAACCTGGCT-----CCG-------A-TGAA---CAGGAAATATGTAACAGCTGTTT
gi|27958 : AATTGTTTTAT--GGTTGTTTCCTGTTT----ATCGAAATACAGGAATTGTGAAACAGCTGTTT
Alignments
lowQualScore : 2 5555
lowQualScore : . ....
lowQualScore : 5 3333
consensus : TTGTGAGGTACAAACCGTAATAACCGGGAACCGGTTTATCTGGCTGTTTC-CTGTT----TACCGAAATACAGGAAATGTGAAACAGCTGTTT
Reference ( family-882 ) : TTGTGAGGTACAAACCGTAATAACCGGGAACCGGTTTATCTGGCTGTTTC-CTGTT----TACCGAAATACAGGAAATGTGAAACAGCTGTTT
gi|27943 : TTGTGAGGTACAAACCGTAATAACCAGGAACCGGTTTATCTGGCTGTTTC-CTGTTTTAATACTGAAATACAGGAAATGTGAAACAGCTGTTT
gi|27944 : TTGTGAGGTACAAACTGTAATGACCGGAAACCGGTTTATCTGGTTGTTTC-TTGTT----TATCGAAATACAGGAAATGTGGAACAGATGTTT
gi|27945 : TTGTGAGGTACAAACTATAGTAACCAGGAACAGGTTTATATGGCTGTTTC-CTGTT----TATCGAAATACAGGAAATGTGAAACAACTG
gi|27946 : TTGTGAGGTACAAACCGTAATTAACGGGAACCGATTTATCTGACAGTTTCACT-TT----TATCAAAATACAGGAAATGTGAAACAGCTGTTT
gi|27947 : TTGTGAGGTACAAATCGTAATAACTGGCAACTGGTTTATTTGGCCTTTTC-CTGTT----TACTTAAATACTGGAAATGTGAAACAGCTGTTT
gi|27948 : TTGTGAGGCATGAATCGTAATAACTGGGAACCAGTTTATCTCGCTA-TTC-GTGTT----TACCGAAATAAAGGAAATATGAAACAGCTGTTT
gi|27949 : TTGTGAGGTATAAACCATAATAACCGGTAACTGGTTTATCT-GCTGTTTC-CT----------TG-AATACAGGAAGTGTGAAACAGCTGTTT
gi|27950 : TTCTGAGGTACAAAAAGTAATAACCGGGAACCGGTTTATCCGGCTATTTC-CTGTT----TATTGAAATACTAGAAATGT
gi|27951 : TTGTGAGGCACAAACTGCAATAACCGGGTACCGGTTTATCTGGCTGTGTC-ATGTT----TACTGAAATA---------TGAAACAGTTCTTT
gi|27952 : TTTTGAGGTACAAAT-G-AACAGCTGGGAACCAGTTTATCAGGCTGTCT------------ACCGAAATACTGGAAATGTCTAACAGCTGTTT
gi|27953 : TGTGAGATACAAACCGTAATAATGGAGAACTGGTTTGTCTCGCTGTTTC-CTGTT----TACCGAAATACAGGAAATATGAAACAGCTATTT
gi|27954 : GTCAGGTACAAATTGTAATAACTGGGTACCTGTTTATCTTACTGTTTC-CTGTT----TACTGAAATATAAGAAATATAAAACAGCTCTTT
gi|27955 : GGTACAAACCATTACAACTGGGAAACTGTTTATCTTGCTGTGTT-CTGTT----TATCAAAATACAGGAAATGTGAAACAGCTGTTT
gi|27956 : GTACAAACCGTAGTAACCGGGAACTGGTTTATCTGGCTGTTTC-TTGTT----TATCGAAATACAGGAAATGTGAAACAGCTGTTT
gi|27957 : AACCCTAATAACTGGGGACCTGTTAACCTGGCT-----------------CCGATGAACAGGAAATATGTAACAGCTGTTT
gi|27958 : AATTGTTTTAT--GGTTGTTTC-CTGTT----TATCGAAATACAGGAATTGTGAAACAGCTGTTT
Alignments
lowQualScore : 2 5555
lowQualScore : . ....
lowQualScore : 5 3333
consensus : TTGTGAGGTACAAACCGTAATAACCGGGAACCGGTTTATCTGGCTGTTTC-CTGTT----TACCGAAATACAGGAAATGTGAAACAGCTGTTT
Reference ( family-882 ) : TTGTGAGGTACAAACCGTAATAACCGGGAACCGGTTTATCTGGCTGTTTC-CTGTT----TACCGAAATACAGGAAATGTGAAACAGCTGTTT
gi|27943 : TTGTGAGGTACAAACCGTAATAACCAGGAACCGGTTTATCTGGCTGTTTC-CTGTTTTAATACTGAAATACAGGAAATGTGAAACAGCTGTTT
gi|27944 : TTGTGAGGTACAAACTGTAATGACCGGAAACCGGTTTATCTGGTTGTTTC-TTGTT----TATCGAAATACAGGAAATGTGGAACAGATGTTT
gi|27945 : TTGTGAGGTACAAACTATAGTAACCAGGAACAGGTTTATATGGCTGTTTC-CTGTT----TATCGAAATACAGGAAATGTGAAACAACTG
gi|27946 : TTGTGAGGTACAAACCGTAATTAACGGGAACCGATTTATCTGACAGTTTCACT-TT----TATCAAAATACAGGAAATGTGAAACAGCTGTTT
gi|27947 : TTGTGAGGTACAAATCGTAATAACTGGCAACTGGTTTATTTGGCCTTTTC-CTGTT----TACTTAAATACTGGAAATGTGAAACAGCTGTTT
gi|27948 : TTGTGAGGCATGAATCGTAATAACTGGGAACCAGTTTATCTCGCTA-TTC-GTGTT----TACCGAAATAAAGGAAATATGAAACAGCTGTTT
gi|27949 : TTGTGAGGTATAAACCATAATAACCGGTAACTGGTTTATCT-GCTGTTTC-CT----------TG-AATACAGGAAGTGTGAAACAGCTGTTT
gi|27950 : TTCTGAGGTACAAAAAGTAATAACCGGGAACCGGTTTATCCGGCTATTTC-CTGTT----TATTGAAATACTAGAAATGT
gi|27951 : TTGTGAGGCACAAACTGCAATAACCGGGTACCGGTTTATCTGGCTGTGTC-ATGTT----TACTGAAATA---------TGAAACAGTTCTTT
gi|27952 : TTTTGAGGTACAAAT-G-AACAGCTGGGAACCAGTTTATCAGGCTGTCT------------ACCGAAATACTGGAAATGTCTAACAGCTGTTT
gi|27953 : TGTGAGATACAAACCGTAATAATGGAGAACTGGTTTGTCTCGCTGTTTC-CTGTT----TACCGAAATACAGGAAATATGAAACAGCTATTT
gi|27954 : GTCAGGTACAAATTGTAATAACTGGGTACCTGTTTATCTTACTGTTTC-CTGTT----TACTGAAATATAAGAAATATAAAACAGCTCTTT
gi|27955 : GGTACAAACCATTACAACTGGGAAACTGTTTATCTTGCTGTGTT-CTGTT----TATCAAAATACAGGAAATGTGAAACAGCTGTTT
gi|27956 : GTACAAACCGTAGTAACCGGGAACTGGTTTATCTGGCTGTTTC-TTGTT----TATCGAAATACAGGAAATGTGAAACAGCTGTTT
gi|27957 : AACCCTAATAACTGGGGACCTGTTAACCTGGCT-----------------CCGATGAACAGGAAATATGTAACAGCTGTTT
gi|27958 : AATTGTTTTAT--GGTTGTTTC-CTGTT----TATCGAAATACAGGAATTGTGAAACAGCTGTTT
blockSeqs : A .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : ****
originalCons : TTGTGAGGTACAAACCGTAATAACCGGGAACCGGTTTATCTGGCTGTTTC-CTGTT----TACCGAAATACAGGAAATGTGAAACAGCTGTTT
finalCons : TTGTGAGGTACAAACCGTAATAACCGGGAACCGGTTTATCTGGCTGTTTC-CTGTT----TACCGAAATACAGGAAATGTGAAACAGCTGTTT
Alignments
lowQualScore : 2 5555
lowQualScore : . ....
lowQualScore : 5 3333
consensus : TTGTGAGGTACAAACCGTAATAACCGGGAACCGGTTTATCTGGCTGTTTC-CTGTT----TACCGAAATACAGGAAATGTGAAACAGCTGTTT
Reference ( family-882 ) : TTGTGAGGTACAAACCGTAATAACCGGGAACCGGTTTATCTGGCTGTTTC-CTGTT----TACCGAAATACAGGAAATGTGAAACAGCTGTTT
gi|27943 : TTGTGAGGTACAAACCGTAATAACCAGGAACCGGTTTATCTGGCTGTTTC-CTGTTTTAATACTGAAATACAGGAAATGTGAAACAGCTGTTT
gi|27944 : TTGTGAGGTACAAACTGTAATGACCGGAAACCGGTTTATCTGGTTGTTTC-TTGTT----TATCGAAATACAGGAAATGTGGAACAGATGTTT
gi|27945 : TTGTGAGGTACAAACTATAGTAACCAGGAACAGGTTTATATGGCTGTTTC-CTGTT----TATCGAAATACAGGAAATGTGAAACAACTG
gi|27946 : TTGTGAGGTACAAACCGTAATTAACGGGAACCGATTTATCTGACAGTTTCACT-TT----TATCAAAATACAGGAAATGTGAAACAGCTGTTT
gi|27947 : TTGTGAGGTACAAATCGTAATAACTGGCAACTGGTTTATTTGGCCTTTTC-CTGTT----TACTTAAATACTGGAAATGTGAAACAGCTGTTT
gi|27948 : TTGTGAGGCATGAATCGTAATAACTGGGAACCAGTTTATCTCGCTA-TTC-GTGTT----TACCGAAATAAAGGAAATATGAAACAGCTGTTT
gi|27949 : TTGTGAGGTATAAACCATAATAACCGGTAACTGGTTTATCT-GCTGTTTC-CT----------TG-AATACAGGAAGTGTGAAACAGCTGTTT
gi|27950 : TTCTGAGGTACAAAAAGTAATAACCGGGAACCGGTTTATCCGGCTATTTC-CTGTT----TATTGAAATACTAGAAATGT
gi|27951 : TTGTGAGGCACAAACTGCAATAACCGGGTACCGGTTTATCTGGCTGTGTC-ATGTT----TACTGAAATA---------TGAAACAGTTCTTT
gi|27952 : TTTTGAGGTACAAAT-G-AACAGCTGGGAACCAGTTTATCAGGCTGTCT------------ACCGAAATACTGGAAATGTCTAACAGCTGTTT
gi|27953 : TGTGAGATACAAACCGTAATAATGGAGAACTGGTTTGTCTCGCTGTTTC-CTGTT----TACCGAAATACAGGAAATATGAAACAGCTATTT
gi|27954 : GTCAGGTACAAATTGTAATAACTGGGTACCTGTTTATCTTACTGTTTC-CTGTT----TACTGAAATATAAGAAATATAAAACAGCTCTTT
gi|27955 : GGTACAAACCATTACAACTGGGAAACTGTTTATCTTGCTGTGTT-CTGTT----TATCAAAATACAGGAAATGTGAAACAGCTGTTT
gi|27956 : GTACAAACCGTAGTAACCGGGAACTGGTTTATCTGGCTGTTTC-TTGTT----TATCGAAATACAGGAAATGTGAAACAGCTGTTT
gi|27957 : AACCCTAATAACTGGGGACCTGTTAACCTGGCT-----------------CCGATGAACAGGAAATATGTAACAGCTGTTT
gi|27958 : AATTGTTTTAT--GGTTGTTTC-CTGTT----TATCGAAATACAGGAATTGTGAAACAGCTGTTT