lowQualScore : 1
lowQualScore : 5 5555 2 0 2 2 44 2 2
lowQualScore : . .... . . . . .. . .
lowQualScore : 1 3333 5 2 5 5 55 5 6
consensus : TCNAACTGCTC----AAGAGAAA-GTAGTTCTTG-A-TTT-TTT-ATGTATCTGTCGGATGA
Reference ( gi|51228 ) : TCTAACTGCTC----AAGAGAAA-GTAGTTCTTG-A-TTT-TTT-ATGTATCTGTCTGATGA
gi|51229 : TCCAACTGCTC----AAGAGAAA-GTAGCTCTTG-A-TTT-TTT-ATGTATCTGTCTGATGA
gi|51225 : TCTAACTGCTC----AAGAGAAA-GTAGTTCTTG-A-TTT-TTT-GTGTATCTGTAGGACGA
gi|51227 : tcTCTAACTACTC----AAGAGAAA-GTAGTTCTTG-C-TTA-TTT-ATGTTTCTGTCAGATGA
gi|51220 : TCAAACTACTT----AAGAGAAA-GTAGTTCTTG-A-TTA-TTT-GTGTATCTGTCAGATGA
gi|51231 : ttTCTAACTGCTC----AAGAGAAA-GTAGTTATTG-A-TGT-GTT-GTGTATATGTCGGATGA
gi|51223 : TCAAACTAATC----AAGAGAAA-GTAGTTCGTG-A-TTG-TTT-ATGTATATGTCTGATGA
gi|51221 : ttTCAAACTACTT----AAGAGAAA-GTAGTTCTTG-A-TTA-TTT-GTGTGTCTGTCAGATGA
gi|51233 : ttTCTAACTGCTC----AAGAAAAA-GTAGTTCTTG-A-TTTGTTT-ATGTA
gi|51230 : TCGAACTGCTC----AAGAAAAAAGTAGTTGTTG-A-TTG-TTT-ATGTATCTGTCGCATGA
gi|51224 : TCAAACTACTC----AAGAGAAA-GTCGTTCTTGAA-TTT-TTT-ATTTATCTGTTGGATG
gi|51232 : ttTCTAACTACTC----AATAAAAA-GTAGTTTGTG-ACTTT-TTT-ATCTATCTGTCAGATAA
gi|51226 : TCAAACTACTT----AAGAGAAA-GTAGTGTTT----TTT-TTA-ATGTATTTGTCAGATG
gi|51222 : tcAACTACTC----AAGAAAAA-GTAGTTCTTG-A-TTA-TTT-ATGTATCCGTCAGAT
gi|51234 : ttccaAACTACTG----AAGAGAAA-GTAGTTTTTT-A-TTT-TTTCCTGTATCTGTCGAATGA
gi|51235 : ACTGCTC----AAGAAAAA-GTAGTT-TTG-------TTT-ATGTATCTGTCGGATGA
gi|51236 : ACTGCTCTTGAAAGAGAAA-GTAGTTTTTG-A---T-TTT-GTGTATCTGTCGTATGA
Alignments
lowQualScore : 1 5555 2 2 2 33 2 0
lowQualScore : . .... . . . .. . .
lowQualScore : 0 0000 4 4 4 77 4 7
consensus : TCNAACTGCTC----AAGAGAAA-GTAGTTCTTG-A-TTT-TTT-ATGTATCTGTCGGATGA
Reference ( family-876 ) : TCNAACTGCTC----AAGAGAAA-GTAGTTCTTG-A-TTT-TTT-ATGTATCTGTCGGATGA
gi|51220 : TCAAACTACTT----AAGAGAAA-GTAGTTCTTG-A-TTA-TTT-GTGTATCTGTCAGATGA
gi|51221 : ttTCAAACTACTT----AAGAGAAA-GTAGTTCTTG-A-TTA-TTT-GTGTGTCTGTCAGATGA
gi|51222 : ttCAAACTACTC----AAGAAAAA-GTAGTTCTTG-A-TTA-TTT-ATGTATCCGTCAGAT
gi|51223 : ttcTCAAACTAATC----AAGAGAAA-GTAGTTCGTG-A-TTG-TTT-ATGTATATGTCTGATGA
gi|51224 : ttTCAAACTACTC----AAGAGAAA-GTCGTTCTTGAA-TTT-TTT-ATTTATCTGTTGGATG
gi|51225 : ttTCTAACTGCTC----AAGAGAAA-GTAGTTCTTG-A-TTT-TTT-GTGTATCTGTAGGACGA
gi|51226 : tcTCAAACTACTT----AAGAGAAA-GTAGTGTTT----TTT-TTA-ATGTATTTGTCAGATG
gi|51227 : tcTCTAACTACTC----AAGAGAAA-GTAGTTCTTG-C-TTA-TTT-ATGTTTCTGTCAGATGA
gi|51228 : TCTAACTGCTC----AAGAGAAA-GTAGTTCTTG-A-TTT-TTT-ATGTATCTGTCTGATGA
gi|51229 : TCCAACTGCTC----AAGAGAAA-GTAGCTCTTG-A-TTT-TTT-ATGTATCTGTCTGATGA
gi|51230 : TCGAACTGCTC----AAGAAAAAAGTAGTTGTTG-A-TTG-TTT-ATGTATCTGTCGCATGA
gi|51231 : TCTAACTGCTC----AAGAGAAA-GTAGTTATTG-A-TGT-GTT-GTGTATATGTCGGATGA
gi|51232 : TCTAACTACTC----AATAAAAA-GTAGTTTGTG-ACTTT-TTT-ATCTATCTGTCAGATAA
gi|51233 : TCTAACTGCTC----AAGAAAAA-GTAGTTCTTG-A-TTTGTTT-ATGTA
gi|51234 : AACTACTG----AAGAGAAA-GTAGTTTTTT-A-TTT-TTTCCTGTATCTGTCGAATGA
gi|51235 : ACTGCTC----AAGAAAAA-GTAGTT-TTG-------TTT-ATGTATCTGTCGGATGA
gi|51236 : ACTGCTCTTGAAAGAGAAA-GTAGTTTTTG-A---T-TTT-GTGTATCTGTCGTATGA
Alignments
lowQualScore : 1 5555 2 2 2 33 2 0
lowQualScore : . .... . . . .. . .
lowQualScore : 0 0000 4 4 4 77 4 7
consensus : TCNAACTGCTC----AAGAGAAA-GTAGTTCTTG-A-TTT-TTT-ATGTATCTGTCGGATGA
Reference ( family-876 ) : TCNAACTGCTC----AAGAGAAA-GTAGTTCTTG-A-TTT-TTT-ATGTATCTGTCGGATGA
gi|51220 : TCAAACTACTT----AAGAGAAA-GTAGTTCTTG-A-TTA-TTT-GTGTATCTGTCAGATGA
gi|51221 : ttTCAAACTACTT----AAGAGAAA-GTAGTTCTTG-A-TTA-TTT-GTGTGTCTGTCAGATGA
gi|51222 : ttCAAACTACTC----AAGAAAAA-GTAGTTCTTG-A-TTA-TTT-ATGTATCCGTCAGAT
gi|51223 : ttcTCAAACTAATC----AAGAGAAA-GTAGTTCGTG-A-TTG-TTT-ATGTATATGTCTGATGA
gi|51224 : ttTCAAACTACTC----AAGAGAAA-GTCGTTCTTGAA-TTT-TTT-ATTTATCTGTTGGATG
gi|51225 : ttTCTAACTGCTC----AAGAGAAA-GTAGTTCTTG-A-TTT-TTT-GTGTATCTGTAGGACGA
gi|51226 : tcTCAAACTACTT----AAGAGAAA-GTAGTGTTT----TTT-TTA-ATGTATTTGTCAGATG
gi|51227 : tcTCTAACTACTC----AAGAGAAA-GTAGTTCTTG-C-TTA-TTT-ATGTTTCTGTCAGATGA
gi|51228 : TCTAACTGCTC----AAGAGAAA-GTAGTTCTTG-A-TTT-TTT-ATGTATCTGTCTGATGA
gi|51229 : TCCAACTGCTC----AAGAGAAA-GTAGCTCTTG-A-TTT-TTT-ATGTATCTGTCTGATGA
gi|51230 : TCGAACTGCTC----AAGAAAAAAGTAGTTGTTG-A-TTG-TTT-ATGTATCTGTCGCATGA
gi|51231 : TCTAACTGCTC----AAGAGAAA-GTAGTTATTG-A-TGT-GTT-GTGTATATGTCGGATGA
gi|51232 : TCTAACTACTC----AATAAAAA-GTAGTTTGTG-ACTTT-TTT-ATCTATCTGTCAGATAA
gi|51233 : TCTAACTGCTC----AAGAAAAA-GTAGTTCTTG-A-TTTGTTT-ATGTA
gi|51234 : AACTACTG----AAGAGAAA-GTAGTTTTTT-A-TTT-TTTCCTGTATCTGTCGAATGA
gi|51235 : ACTGCTC----AAGAAAAA-GTAGTT-TTG-------TTT-ATGTATCTGTCGGATGA
gi|51236 : ACTGCTCTTGAAAGAGAAA-GTAGTTTTTG-A---T-TTT-GTGTATCTGTCGTATGA
blockSeqs : A TTGA A A C TG C
blockSeqs : A . . . . A .
blockSeqs : A . . . . A .
blockSeqs : A . . . . G .
blockSeqs : T . . . . T .
blockSeqs : A . . . . T .
blockSeqs : T . . . . T .
blockSeqs : T . . . . A .
blockSeqs : C . . . . T .
blockSeqs : G . . . . T .
blockSeqs : T . . . . G .
blockSeqs : T . . . . T .
blockSeqs : T . . . . T .
blockSeqs : . . . . T .
blockSeqs : . . . . T .
blockSeqs : . . . . . .
blockSeqCons :
originalCons : TCNAACTGCTC----AAGAGAAA-GTAGTTCTTG-A-TTT-TTT-ATGTATCTGTCGGATGA
finalCons : TCNAACTGCTC----AAGAGAAA-GTAGTTCTTG-A-TTT-TTT-ATGTATCTGTCGGATGA
Alignments
lowQualScore : 1 5555 2 2 2 33 2 0
lowQualScore : . .... . . . .. . .
lowQualScore : 0 0000 4 4 4 77 4 7
consensus : TCNAACTGCTC----AAGAGAAA-GTAGTTCTTG-A-TTT-TTT-ATGTATCTGTCGGATGA
Reference ( family-876 ) : TCNAACTGCTC----AAGAGAAA-GTAGTTCTTG-A-TTT-TTT-ATGTATCTGTCGGATGA
gi|51220 : TCAAACTACTT----AAGAGAAA-GTAGTTCTTG-A-TTA-TTT-GTGTATCTGTCAGATGA
gi|51221 : ttTCAAACTACTT----AAGAGAAA-GTAGTTCTTG-A-TTA-TTT-GTGTGTCTGTCAGATGA
gi|51222 : ttCAAACTACTC----AAGAAAAA-GTAGTTCTTG-A-TTA-TTT-ATGTATCCGTCAGAT
gi|51223 : ttcTCAAACTAATC----AAGAGAAA-GTAGTTCGTG-A-TTG-TTT-ATGTATATGTCTGATGA
gi|51224 : ttTCAAACTACTC----AAGAGAAA-GTCGTTCTTGAA-TTT-TTT-ATTTATCTGTTGGATG
gi|51225 : ttTCTAACTGCTC----AAGAGAAA-GTAGTTCTTG-A-TTT-TTT-GTGTATCTGTAGGACGA
gi|51226 : tcTCAAACTACTT----AAGAGAAA-GTAGTGTTT----TTT-TTA-ATGTATTTGTCAGATG
gi|51227 : tcTCTAACTACTC----AAGAGAAA-GTAGTTCTTG-C-TTA-TTT-ATGTTTCTGTCAGATGA
gi|51228 : TCTAACTGCTC----AAGAGAAA-GTAGTTCTTG-A-TTT-TTT-ATGTATCTGTCTGATGA
gi|51229 : TCCAACTGCTC----AAGAGAAA-GTAGCTCTTG-A-TTT-TTT-ATGTATCTGTCTGATGA
gi|51230 : TCGAACTGCTC----AAGAAAAAAGTAGTTGTTG-A-TTG-TTT-ATGTATCTGTCGCATGA
gi|51231 : TCTAACTGCTC----AAGAGAAA-GTAGTTATTG-A-TGT-GTT-GTGTATATGTCGGATGA
gi|51232 : TCTAACTACTC----AATAAAAA-GTAGTTTGTG-ACTTT-TTT-ATCTATCTGTCAGATAA
gi|51233 : TCTAACTGCTC----AAGAAAAA-GTAGTTCTTG-A-TTTGTTT-ATGTA
gi|51234 : AACTACTG----AAGAGAAA-GTAGTTTTTT-A-TTT-TTTCCTGTATCTGTCGAATGA
gi|51235 : ACTGCTC----AAGAAAAA-GTAGTT-TTG-------TTT-ATGTATCTGTCGGATGA
gi|51236 : ACTGCTCTTGAAAGAGAAA-GTAGTTTTTG-A---T-TTT-GTGTATCTGTCGTATGA