lowQualScore : 11 11111
lowQualScore : 00 3 3 2 2 2 22 66666 2 1 444
lowQualScore : .. . . . . . .. ..... . . ...
lowQualScore : 00 3 1 7 5 5 77 22222 5 3 444
consensus : ATATATA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTCAATAAAATA---TTCTTCTTCTT
Reference ( gi|123780 ) : ATATATA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTCTTCTTCTT
gi|123781 : ATATATA--TATG-A-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGGTAGTAAAATA---TTCTTCTTCTT
gi|123782 : ATGTATAGCTATG-T-G-TGT-TG-TAACTAGAAACTGTA-----AAAGTTT-AAGT---TAAAATG---TTCTTCTTC
gi|123783 : ATGTATAATTATG-TAT-G-T-TA-TAACGAGAAGCTTTA-----AAAGTTT-AAGTCAATAAAATATATTTCTTCTTCTT
gi|123784 : ATATATA--TATG-T-A-T-A-TGATGACGAGAAACTGTAT----ATAGTTT-AAGTCAATAAAATG----TCTT
gi|123785 : TATATA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTATTCTTCT
gi|123786 : TGTACA--TTTA-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAACA---TTCTATTTC
gi|123787 : TATATT--TATGAT-T-T-G-TG-TAACAAGAAACTGTA-----ACAGTTT-AAGTTACTAAAATA---TTATTCTTC
gi|123789 : TACATT--TATG-T-T-T-T--G-TAACGGGAAACAGTATTGAAACAGTTTTAAGTAAATAAAATA---TTCTTCTTATT
gi|123788 : TGTATA--TATG-T-T-T-TATG-TGATGAGAAACTTTA-----ATAGTTT-AAATCAATAAAA-A---ATCTTCT
gi|123790 : ATGTA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTCTTCTTCTT
gi|123791 : A--TATG-A-T-T-T--G-TAACAAGATACTGTG-----ACAGATT-AAGTTAATTAAATA---CTCTTCTTCT
gi|123792 : TG-T-TAT-T-TG---ATGAGAAACTATGT----ATAGTTT-AAATCAATAAAATA---TTCTTCTTCTT
gi|123793 : -T-T-T-TG-TAATGAGAAACTGTA-----ACAGTTT-AAGCTAACAAAATA---TTCTTCTTC
gi|123795 : -T-T-TG---ATGAGAAACTATGT----ATAGTTT-AAATCAATAAAATA---TTCTTCTTCTT
gi|123794 : -T-T-TG---ATGAGAAACTATGT----ATAGTTT-AAATCAATAAAATA---TTCTTCTTCTT
gi|123796 : -T-TG-TAACGAAATAGTGTT-----ACAGTTT-AAGTTAATCAAATA---ATCTTCTTCTT
Alignments
lowQualScore : 11111
lowQualScore : 99 3 2 2 2 2 2 55555 2 2 444
lowQualScore : .. . . . . . . ..... . . ...
lowQualScore : 22 1 9 5 4 4 4 33333 4 9 111
consensus : ATATATA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTCTTCTTCTT
Reference ( family-873 ) : ATATATA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTCAATAAAATA---TTCTTCTTCTT
gi|123780 : ATATATA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTCTTCTTCTT
gi|123781 : ATATATA--TATG-A-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGGTAGTAAAATA---TTCTTCTTCTT
gi|123782 : ATGTATAGCTATG-T-G-TGT-TG-TAACTAGAAACTGTA-----AAAGTTT-AAGT---TAAAATG---TTCTTCTTC
gi|123783 : ATGTATAATTATG-TAT-G-T-TA-TAACGAGAAGCTTTA-----AAAGTTT-AAGTCAATAAAATATATTTCTTCTTCTT
gi|123784 : ATATATA--TATG-T-A-T-A-TGATGACGAGAAACTGTAT----ATAGTTT-AAGTCAATAAAATG----TCTT
gi|123785 : TATATA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTATTCTTCT
gi|123786 : TGTACA--TTTA-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAACA---TTCTATTTC
gi|123787 : TATATT--TATGAT-T-T-G-TG-TAACAAGAAACTGTA-----ACAGTTT-AAGTTACTAAAATA---TTATTCTTC
gi|123788 : TGTATA--TATG-T-T-T-TATG-TGATGAGAAACTTTA-----ATAGTTT-AAATCAATAAAA-A---ATCTTCT
gi|123789 : TACATT--TATG-T-T-T-T--G-TAACGGGAAACAGTATTGAAACAGTTTTAAGTAAATAAAATA---TTCTTCTTATT
gi|123790 : ATGTA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTCTTCTTCTT
gi|123791 : A--TATG-A-T-T-T--G-TAACAAGATACTGTG-----ACAGATT-AAGTTAATTAAATA---CTCTTCTTCT
gi|123792 : TG-T-TAT-T-TG---ATGAGAAACTATGT----ATAGTTT-AAATCAATAAAATA---TTCTTCTTCTT
gi|123793 : -T-T-T-TG-TAATGAGAAACTGTA-----ACAGTTT-AAGCTAACAAAATA---TTCTTCTTC
gi|123794 : -T-T-TG---ATGAGAAACTATGT----ATAGTTT-AAATCAATAAAATA---TTCTTCTTCTT
gi|123795 : -T-T-TG---ATGAGAAACTATGT----ATAGTTT-AAATCAATAAAATA---TTCTTCTTCTT
gi|123796 : -T-TG-TAACGAAATAGTGTT-----ACAGTTT-AAGTTAATCAAATA---ATCTTCTTCTT
Alignments
lowQualScore : 11111
lowQualScore : 99 3 2 2 2 2 2 55555 2 0 444
lowQualScore : .. . . . . . . ..... . . ...
lowQualScore : 22 1 9 5 4 4 4 33333 4 7 111
consensus : ATATATA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTCTTCTTCTT
Reference ( family-873 ) : ATATATA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTCTTCTTCTT
gi|123780 : ATATATA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTCTTCTTCTT
gi|123781 : ATATATA--TATG-A-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGGTAGTAAAATA---TTCTTCTTCTT
gi|123782 : ATGTATAGCTATG-T-G-TGT-TG-TAACTAGAAACTGTA-----AAAGTTT-AAGT---TAAAATG---TTCTTCTTC
gi|123783 : ATGTATAATTATG-TAT-G-T-TA-TAACGAGAAGCTTTA-----AAAGTTT-AAGTCAATAAAATATATTTCTTCTTCTT
gi|123784 : ATATATA--TATG-T-A-T-A-TGATGACGAGAAACTGTAT----ATAGTTT-AAGTCAATAAAATG----TCTT
gi|123785 : TATATA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTATTCTTCT
gi|123786 : TGTACA--TTTA-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAACA---TTCTATTTC
gi|123787 : TATATT--TATGAT-T-T-G-TG-TAACAAGAAACTGTA-----ACAGTTT-AAGTTACTAAAATA---TTATTCTTC
gi|123788 : TGTATA--TATG-T-T-T-TATG-TGATGAGAAACTTTA-----ATAGTTT-AAATCAATAAAA-A---ATCTTCT
gi|123789 : TACATT--TATG-T-T-T-T--G-TAACGGGAAACAGTATTGAAACAGTTTTAAGTAAATAAAATA---TTCTTCTTATT
gi|123790 : ATGTA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTCTTCTTCTT
gi|123791 : A--TATG-A-T-T-T--G-TAACAAGATACTGTG-----ACAGATT-AAGTTAATTAAATA---CTCTTCTTCT
gi|123792 : TG-T-TAT-T-TG---ATGAGAAACTATGT----ATAGTTT-AAATCAATAAAATA---TTCTTCTTCTT
gi|123793 : -T-T-T-TG-TAATGAGAAACTGTA-----ACAGTTT-AAGCTAACAAAATA---TTCTTCTTC
gi|123794 : -T-T-TG---ATGAGAAACTATGT----ATAGTTT-AAATCAATAAAATA---TTCTTCTTCTT
gi|123795 : -T-T-TG---ATGAGAAACTATGT----ATAGTTT-AAATCAATAAAATA---TTCTTCTTCTT
gi|123796 : -T-TG-TAACGAAATAGTGTT-----ACAGTTT-AAGTTAATCAAATA---ATCTTCTTCTT
blockSeqs : GC A A A G A A TTGAA T TAT
blockSeqs : AT . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqCons :
originalCons : ATATATA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTCTTCTTCTT
finalCons : ATATATA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTCTTCTTCTT
Alignments
lowQualScore : 11111
lowQualScore : 99 3 2 2 2 2 2 55555 2 0 444
lowQualScore : .. . . . . . . ..... . . ...
lowQualScore : 22 1 9 5 4 4 4 33333 4 7 111
consensus : ATATATA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTCTTCTTCTT
Reference ( family-873 ) : ATATATA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTCTTCTTCTT
gi|123780 : ATATATA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTCTTCTTCTT
gi|123781 : ATATATA--TATG-A-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGGTAGTAAAATA---TTCTTCTTCTT
gi|123782 : ATGTATAGCTATG-T-G-TGT-TG-TAACTAGAAACTGTA-----AAAGTTT-AAGT---TAAAATG---TTCTTCTTC
gi|123783 : ATGTATAATTATG-TAT-G-T-TA-TAACGAGAAGCTTTA-----AAAGTTT-AAGTCAATAAAATATATTTCTTCTTCTT
gi|123784 : ATATATA--TATG-T-A-T-A-TGATGACGAGAAACTGTAT----ATAGTTT-AAGTCAATAAAATG----TCTT
gi|123785 : TATATA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTATTCTTCT
gi|123786 : TGTACA--TTTA-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAACA---TTCTATTTC
gi|123787 : TATATT--TATGAT-T-T-G-TG-TAACAAGAAACTGTA-----ACAGTTT-AAGTTACTAAAATA---TTATTCTTC
gi|123788 : TGTATA--TATG-T-T-T-TATG-TGATGAGAAACTTTA-----ATAGTTT-AAATCAATAAAA-A---ATCTTCT
gi|123789 : TACATT--TATG-T-T-T-T--G-TAACGGGAAACAGTATTGAAACAGTTTTAAGTAAATAAAATA---TTCTTCTTATT
gi|123790 : ATGTA--TATG-T-T-T-T-TG-TAACGAGAAACTGTA-----ACAGTTT-AAGTTAATAAAATA---TTCTTCTTCTT
gi|123791 : A--TATG-A-T-T-T--G-TAACAAGATACTGTG-----ACAGATT-AAGTTAATTAAATA---CTCTTCTTCT
gi|123792 : TG-T-TAT-T-TG---ATGAGAAACTATGT----ATAGTTT-AAATCAATAAAATA---TTCTTCTTCTT
gi|123793 : -T-T-T-TG-TAATGAGAAACTGTA-----ACAGTTT-AAGCTAACAAAATA---TTCTTCTTC
gi|123794 : -T-T-TG---ATGAGAAACTATGT----ATAGTTT-AAATCAATAAAATA---TTCTTCTTCTT
gi|123795 : -T-T-TG---ATGAGAAACTATGT----ATAGTTT-AAATCAATAAAATA---TTCTTCTTCTT
gi|123796 : -T-TG-TAACGAAATAGTGTT-----ACAGTTT-AAGTTAATCAAATA---ATCTTCTTCTT