lowQualScore : 3 6 1 2 33 5 2
lowQualScore : . . . . .. . .
lowQualScore : 1 6 8 5 44 1 4
consensus : ATCAAAGCGCTGTGAGCGCTGAAGGCCT-GGGG--CTGCNGATGGCTTGGTGGAGAAGTAGGTTAGAC
Reference ( gi|23714 ) : ATCAAAGCACTGTGAGCGCTGGAAGCCT-GGGG--CTACTGATGGCTTGGTGGAGAAGTAGGTTAGAC
gi|23704 : ATCAAAACACTGTGAGTGCTGAAGGCCT-GGGG--CTGCAGATGGCTTGGTGGAGAAATAGGTTAGA
gi|23702 : aATCAAAACGTTGTGAGCGCTGAAAG--T-GGGGGACTGCTGATGGCTTGGTGGAGAAGTAGGTTAGAC
gi|23705 : aATCAAAGCGCTATGAGCACTGTAAGCCT-GAGG--CTACTGATGGCTTGGTGGAGA---AGGTTACACatt
gi|23703 : aATCGAAGCGCTATGAATGCTGAATGCCT-GGAG--CTGCTGATGGTTTGGTGGAGAAGTAGGTTAGatt
gi|23707 : aATCAAAGCTCTGTGAGCGCTGAAAGACT-GGGA--CTGCTGATGACTTGCTATAGAAGTAAATTAGACtcatt
gi|23706 : aATCCAAGTGCTATGTGCGTTGAAAGCCT-GGAG--ATGCTGATGG-TTGGTGGAGAAGTAGGTTAGACatt
gi|23710 : aATCAAAGCACTATGAGCACTGAAGGTCT-TGGG--CTGCAAATGGCTTGATGGAGAAATAGGTTGGatt
gi|23708 : aATCAAAGTGCTGTGAGCGCTGAAAGCCA-TGGT--ATGTTGATGGCTTGGTGGAGAAGTAGCTT
gi|23715 : aACCAAAGCGCTGTCAGCGCTAAATACCT-GGGG--CAGCTGATGGCTTGGTTGATAAGCAAGTTAGAC
gi|23709 : ATCAAAGCGTTGTAAGCGCCGAAGGCCT-GGGG--CTGCAGAAGGTTTGATAGAGATGTAAGTTa
gi|23712 : aATCAAGGCACCGTGAGCGCTGAAGACCTCGTGG--CTGCATATGGTTTGATGGAGAAGTcaacatt
gi|23711 : aACCAAAGTTCTGTGAACGCTAAAAGATT-GGGA--CAGCTGATGATTTGGTATAGAAGTAAATAAGAC
gi|23713 : aTCAAAGCACGATGAGCACTGAAGGACT-GGTG--CAGCTGATGACTTGGTGGatt
gi|23716 : agTGTGAGCGCTAAAGGCCT-CGGG--CTGCATACAGCTTGTTGGA-AAGTAGGTTAG
gi|23717 : GCGCTGAAGGCCT-GGGG---TGCAGATGGTTTGATGGAGAAGTAGATTTGAgaacat
gi|23718 : TGAAGGCCT-GGGG---TGCAGATGGTTTGATGGAGAAGTAAATTAGAC
Alignments
lowQualScore : 2 33 1
lowQualScore : . .. .
lowQualScore : 4 22 0
consensus : ATCAAAGCGCTGTGAGCGCTGAAGGCCT-GGGG--CTGCTGATGGCTTGGTGGAGAAGTAGGTTAGAC
Reference ( family-865 ) : ATCAAAGCGCTGTGAGCGCTGAAGGCCT-GGGG--CTGCNGATGGCTTGGTGGAGAAGTAGGTTAGAC
gi|23702 : ATCAAAACGTTGTGAGCGCTGAAAG--T-GGGGGACTGCTGATGGCTTGGTGGAGAAGTAGGTTAGAC
gi|23703 : aATCGAAGCGCTATGAATGCTGAATGCCT-GGAG--CTGCTGATGGTTTGGTGGAGAAGTAGGTTAGatt
gi|23704 : aATCAAAACACTGTGAGTGCTGAAGGCCT-GGGG--CTGCAGATGGCTTGGTGGAGAAATAGGTTAGAtcatt
gi|23705 : aATCAAAGCGCTATGAGCACTGTAAGCCT-GAGG--CTACTGATGGCTTGGTGGAGA---AGGTTACAC
gi|23706 : aATCCAAGTGCTATGTGCGTTGAAAGCCT-GGAG--ATGCTGATGG-TTGGTGGAGAAGTAGGTTAGACatt
gi|23707 : aATCAAAGCTCTGTGAGCGCTGAAAGACT-GGGA--CTGCTGATGACTTGCTATAGAAGTAAATTAGACatt
gi|23708 : aATCAAAGTGCTGTGAGCGCTGAAAGCCA-TGGT--ATGTTGATGGCTTGGTGGAGAAGTAGCTTatt
gi|23709 : aATCAAAGCGTTGTAAGCGCCGAAGGCCT-GGGG--CTGCAGAAGGTTTGATAGAGATGTAAGTT
gi|23710 : aATCAAAGCACTATGAGCACTGAAGGTCT-TGGG--CTGCAAATGGCTTGATGGAGAAATAGGTTGGcaacatt
gi|23711 : aACCAAAGTTCTGTGAACGCTAAAAGATT-GGGA--CAGCTGATGATTTGGTATAGAAGTAAATAAGAC
gi|23712 : aATCAAGGCACCGTGAGCGCTGAAGACCTCGTGG--CTGCATATGGTTTGATGGAGAAGTatt
gi|23713 : aTCAAAGCACGATGAGCACTGAAGGACT-GGTG--CAGCTGATGACTTGGTGG
gi|23714 : agATCAAAGCACTGTGAGCGCTGGAAGCCT-GGGG--CTACTGATGGCTTGGTGGAGAAGTAGGTTAGAC
gi|23715 : ACCAAAGCGCTGTCAGCGCTAAATACCT-GGGG--CAGCTGATGGCTTGGTTGATAAGCAAGTTAGAC
gi|23716 : TGTGAGCGCTAAAGGCCT-CGGG--CTGCATACAGCTTGTTGGA-AAGTAGGTTAGa
gi|23717 : GCGCTGAAGGCCT-GGGG---TGCAGATGGTTTGATGGAGAAGTAGATTTGAgaacat
gi|23718 : TGAAGGCCT-GGGG---TGCAGATGGTTTGATGGAGAAGTAAATTAGAC
Alignments
lowQualScore : 2 33 1
lowQualScore : . .. .
lowQualScore : 4 22 7
consensus : ATCAAAGCGCTGTGAGCGCTGAAGGCCT-GGGG--CTGCTGATGGCTTGGTGGAGAAGTAGGTTAGAC
Reference ( family-865 ) : ATCAAAGCGCTGTGAGCGCTGAAGGCCT-GGGG--CTGCTGATGGCTTGGTGGAGAAGTAGGTTAGAC
gi|23702 : ATCAAAACGTTGTGAGCGCTGAAAG--T-GGGGGACTGCTGATGGCTTGGTGGAGAAGTAGGTTAGAC
gi|23703 : aATCGAAGCGCTATGAATGCTGAATGCCT-GGAG--CTGCTGATGGTTTGGTGGAGAAGTAGGTTAGatt
gi|23704 : aATCAAAACACTGTGAGTGCTGAAGGCCT-GGGG--CTGCAGATGGCTTGGTGGAGAAATAGGTTAGAtcatt
gi|23705 : aATCAAAGCGCTATGAGCACTGTAAGCCT-GAGG--CTACTGATGGCTTGGTGGAGA---AGGTTACAC
gi|23706 : aATCCAAGTGCTATGTGCGTTGAAAGCCT-GGAG--ATGCTGATGG-TTGGTGGAGAAGTAGGTTAGACatt
gi|23707 : aATCAAAGCTCTGTGAGCGCTGAAAGACT-GGGA--CTGCTGATGACTTGCTATAGAAGTAAATTAGACatt
gi|23708 : aATCAAAGTGCTGTGAGCGCTGAAAGCCA-TGGT--ATGTTGATGGCTTGGTGGAGAAGTAGCTTatt
gi|23709 : aATCAAAGCGTTGTAAGCGCCGAAGGCCT-GGGG--CTGCAGAAGGTTTGATAGAGATGTAAGTT
gi|23710 : aATCAAAGCACTATGAGCACTGAAGGTCT-TGGG--CTGCAAATGGCTTGATGGAGAAATAGGTTGGcaacatt
gi|23711 : aACCAAAGTTCTGTGAACGCTAAAAGATT-GGGA--CAGCTGATGATTTGGTATAGAAGTAAATAAGAC
gi|23712 : aATCAAGGCACCGTGAGCGCTGAAGACCTCGTGG--CTGCATATGGTTTGATGGAGAAGTatt
gi|23713 : aTCAAAGCACGATGAGCACTGAAGGACT-GGTG--CAGCTGATGACTTGGTGG
gi|23714 : agATCAAAGCACTGTGAGCGCTGGAAGCCT-GGGG--CTACTGATGGCTTGGTGGAGAAGTAGGTTAGAC
gi|23715 : ACCAAAGCGCTGTCAGCGCTAAATACCT-GGGG--CAGCTGATGGCTTGGTTGATAAGCAAGTTAGAC
gi|23716 : TGTGAGCGCTAAAGGCCT-CGGG--CTGCATACAGCTTGTTGGA-AAGTAGGTTAGa
gi|23717 : GCGCTGAAGGCCT-GGGG---TGCAGATGGTTTGATGGAGAAGTAGATTTGAgaacat
gi|23718 : TGAAGGCCT-GGGG---TGCAGATGGTTTGATGGAGAAGTAAATTAGAC
blockSeqs : C . T
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqCons : **
originalCons : ATCAAAGCGCTGTGAGCGCTGAAGGCCT-GGGG--CTGCTGATGGCTTGGTGGAGAAGTAGGTTAGAC
finalCons : ATCAAAGCGCTGTGAGCGCTGAAGGCCT-GGGG--CTGCTGATGGCTTGGTGGAGAAGTAGGTTAGAC
Alignments
lowQualScore : 2 33 1
lowQualScore : . .. .
lowQualScore : 4 22 7
consensus : ATCAAAGCGCTGTGAGCGCTGAAGGCCT-GGGG--CTGCTGATGGCTTGGTGGAGAAGTAGGTTAGAC
Reference ( family-865 ) : ATCAAAGCGCTGTGAGCGCTGAAGGCCT-GGGG--CTGCTGATGGCTTGGTGGAGAAGTAGGTTAGAC
gi|23702 : ATCAAAACGTTGTGAGCGCTGAAAG--T-GGGGGACTGCTGATGGCTTGGTGGAGAAGTAGGTTAGAC
gi|23703 : aATCGAAGCGCTATGAATGCTGAATGCCT-GGAG--CTGCTGATGGTTTGGTGGAGAAGTAGGTTAGatt
gi|23704 : aATCAAAACACTGTGAGTGCTGAAGGCCT-GGGG--CTGCAGATGGCTTGGTGGAGAAATAGGTTAGAtcatt
gi|23705 : aATCAAAGCGCTATGAGCACTGTAAGCCT-GAGG--CTACTGATGGCTTGGTGGAGA---AGGTTACAC
gi|23706 : aATCCAAGTGCTATGTGCGTTGAAAGCCT-GGAG--ATGCTGATGG-TTGGTGGAGAAGTAGGTTAGACatt
gi|23707 : aATCAAAGCTCTGTGAGCGCTGAAAGACT-GGGA--CTGCTGATGACTTGCTATAGAAGTAAATTAGACatt
gi|23708 : aATCAAAGTGCTGTGAGCGCTGAAAGCCA-TGGT--ATGTTGATGGCTTGGTGGAGAAGTAGCTTatt
gi|23709 : aATCAAAGCGTTGTAAGCGCCGAAGGCCT-GGGG--CTGCAGAAGGTTTGATAGAGATGTAAGTT
gi|23710 : aATCAAAGCACTATGAGCACTGAAGGTCT-TGGG--CTGCAAATGGCTTGATGGAGAAATAGGTTGGcaacatt
gi|23711 : aACCAAAGTTCTGTGAACGCTAAAAGATT-GGGA--CAGCTGATGATTTGGTATAGAAGTAAATAAGAC
gi|23712 : aATCAAGGCACCGTGAGCGCTGAAGACCTCGTGG--CTGCATATGGTTTGATGGAGAAGTatt
gi|23713 : aTCAAAGCACGATGAGCACTGAAGGACT-GGTG--CAGCTGATGACTTGGTGG
gi|23714 : agATCAAAGCACTGTGAGCGCTGGAAGCCT-GGGG--CTACTGATGGCTTGGTGGAGAAGTAGGTTAGAC
gi|23715 : ACCAAAGCGCTGTCAGCGCTAAATACCT-GGGG--CAGCTGATGGCTTGGTTGATAAGCAAGTTAGAC
gi|23716 : TGTGAGCGCTAAAGGCCT-CGGG--CTGCATACAGCTTGTTGGA-AAGTAGGTTAGa
gi|23717 : GCGCTGAAGGCCT-GGGG---TGCAGATGGTTTGATGGAGAAGTAGATTTGAgaacat
gi|23718 : TGAAGGCCT-GGGG---TGCAGATGGTTTGATGGAGAAGTAAATTAGAC