lowQualScore                  :                                1                                                 111111111111                         111   1111          111111111                   3333333       11                        11    111     1111                         1                       
lowQualScore                  :                           33 2 1 00   5555  444   2 2 2 3       9        66  0   222222222222   99999999         6666 555   1111  888888  999999999       2 2   6666  0000000 55    44    777777  3     55    66    333     0000      3           2      5                       
lowQualScore                  :                           .. . . ..   ....  ...   . . . .       .        ..  .   ............   ........         .... ...   ....  ......  .........       . .   ....  ....... ..    ..    ......  .     ..    ..    ...     ....      .           .      .                       
lowQualScore                  :                           44 5 8 88   9999  444   5 5 5 1       1        33  6   999999999999   00000000         1111 000   9999  222222  777777777       9 9   1111  0000000 22    22    555555  5     55    99    888     6666      4           2      0                       
consensus                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CGGA---AAT-T-T-TNCAGGAGGNGGAAAAAA--CTTTTT--TT--T-A--GTTTC-------AATATTGGC----T---TTA-T--AA------TA------TTGTCTTTTC-A-TAT----AC-------AC-ATCTT-AAAACACCANATAAATAA--ACAAC-AACA---TCAGT----ATGTCATCAAATGTAATTAATTTTGATTTTATAACACATTTATCAAGTT
Reference ( gi|161014 )       : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGACGGAAAAAA--CTTTTT--TT--T-A--GTTTC-------AATATTGGC----T---TTA-T--AA------TA------TTGTCTTTTC-A-TAT----AC-------AC-ATCTG-AAAACACCAAATAAATAA--ACAAG-AACA---TCAGT----ATGTCATCAAATGTAATTAATTTTGCTTTTATAACACATTTATCAAGTT
gi|161015                     : GAGGGCTCGGCGCATGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAAA-CATTTT--TT--T-A--GTTTC-------AATATTGGC----T---TTA-T--AA------TA------TTGTCTTTTC-A-TAT----AC-------AC-ATCTT-AAAACACCATATAAATAA--ACAAG-AACA---TCAGT----ATGTCATCAAATATAATAGATTTTGATTTTATAACACATTTATCAAGTT
gi|161016                     : GATGGATTGGCGCAAGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAA--CTTTTT--TT--T-A--GTTTC-------ACTTTTGGC----T---TTA-T--AA------TA------TTGTCTTTTC-ATTAT----AC-------AC-ATCTT-AAAACACAACATAAATAA--ACAAC-AACA---TCAAG----ATGTCATCAAATGTAATTAATTTTGATTTTATAACACATTTATCAATTT
gi|161017                     : GAGGGCTCGACGCAAGACTATTTTAA--C-TCACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAA--ATGTTT--TT--T-A--CTTTC-------AAGATTGAC----T---TTA-T--AA------TA------TTGTCTTTTC-A-TAT----AT-------AC-ATCTT-AAAACACCATACAAATAA--ACAAC-AACA---TCAGT----ATGTCATCAAATATAATTAATTTTGATATTATAACACATATATCAAGTT
gi|161019                     : GAGGGCTCGGCGCAAGACAATTCTAA--C-TCGCATTT--CAGA---ATT-T-T-TACAGGAAGTGGAAAAAAAACTTTGT--TT--T-A--GATTC-------AATATTGGC----T---TTA-T--AA------TACATGTATTGTCTTTTC-A-TAT----AC-------AA-ATCTT-AAAACACCATAAAAATAA--ACAAC-AACA---TCAGT----ATGTCATCAAATGTAATTAATTTTGATTTTATAACACATTTATTAAGTT
gi|161020                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TCACATAT--CAGA---ATT-T-T-TACAGG---CGG--------------------------TTTT-------AATATTGGC----T---TGA-T--AA------TA------TTGTCTTTTC-A-TAT----AC-------AC-ATCTT-AAAACACCATATAAATAA--ACAAC-AAAA---TCAGT----ATGTCATCAAATGTAATTAATTTTGATTTTAT
gi|161021                     : GAGGGCCGAGCGCAAAACTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTCAGGAGAAAGAAAAAA--CCTTTTA-AT--T-A---TTTT-------AATATAGGC----TCAATTA-A--AA------AA--------GTCTCTTC-A-TCT----ACTGGTGTTAA-ATCTT-AAAA---TAAAT-AATAA--ACA
gi|161024                     : GAGGGCCGAGCGCAAATCTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTTAGGAGAAAGAAAAAA--CCTTTTAATT--T-----TTTT-------AATATAGGC----TCAATTA-A--AA------TA--------GTCTCTCC-A-TCT----ACTGGTGCTAA-ATCTT-AAAA---TAAATAAG-AA--ACAcattcaatttttaagcattttctgtttattatgattttataac
gi|161022                     : GAGGGCCGAGCGCAAAACTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTTAGGAGAATGAAACAA--CCTTTTAATT--T-----TTTT-------AATATAGGC----TCAATTA-A--AA------TA--------GTCTCTTC-A-TCT----ACTGGTGCTAA-ATCTT-AAAA---TAAAT-AATAA--AC-----ACAT--TCAAT----TTTTAAGCATTTTCTGTTTATTATGATTTTATAACAcattcaatttttaagcattttctgttcattatgattttataa
gi|161025                     : GAAGGTTCGGCGTGAAACTATTGTAT--C-TGACATTT---GGA---AATAT-T-TTCAGGAGAAGGAAAAAT--CTTCTT--TC--TAA--GTTAC-------AATATTGACCAAAT---TAA-T--AG------TAAAC---TTAGATTTTA-A-TAT----
gi|161027                     : GAGGGCTGGGCGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGAAGGAAAAAA--CTGTTT--TT--T-A--TTTTCTTCTTTAGATATT-------T---TTGCT--AA------TA------T----TTTTCAA-AAT----TC-------AA-A--TG-AAAACcatttagtattacaatggcatggataa
gi|161023                     : GAGAGCTTGGTGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGGAGGAAAAAA--CTGTTT--TT--T-A--TTTTC-------Atgcattacttacaatattaacaagtgttatcaattaaagtttgaatataac
gi|161026                     : GAGGACTTGACGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGGAGGAAAAAA--ATGTTT--TT--T-A--TTTTC-----------TT--C----T---TTA----AA------TA------TT----TTTG-A-TA-----AT-------AT-TTTTC-AAAAT-TCAAATGAA--A--ACTG----CA---TTACTTACAATATTAACAAATGTTATCAATT
gi|161018                     : GAGGGCTCGGTGCAAGACTATTCTAA--CTTGAT---------------T-T-T-TACAGAAAATG----------TTTTT--TTGAT-A--TTTT------------TTGG---------TTA-C--AA------T----------TCTTT---A-AAT----AC-------GCAATCTGTAAAATA
gi|161028                     : GAAGACTCATCGCAAAACTATTCTGA--C-T--CAGTTACCAGA---AAC-CAT-TATAAGATATGAAAAAAA----------------AAGGTTAA-------AATCTTGGC----T---TTAAC--AAATCTCTTA------ATCTCTTTAC-A-TAT----A--------AT--TCTT-TAAACATTCTATAAATAATTACATGTAACAACTTCAAT----ATTGCA--AAACATGATT--TTTT--TTTTttata
gi|161029                     :      CTCAGCGCAAGACTATTCTAA--C-TTAAATTT--TAGAAGTAAT-T-T-T
gi|161030                     :            GCAAGACTATTCTAATCC-TGT--TTT--CAGA---AAA-A-TATATAGAAAATGGAAGTAA--CTTCGT--TT--A-A--GTTTT-------ATTATTAGC----T---TTA-TGCAA-------A------TTGTCTCTTC-A-TATAATAAC-------AC-ATCTT-AAAGTACTGTATCAATA





Alignments
lowQualScore                  :                                1                                                        11111                  111                 11111111                   1111111                                                     1111                                                    
lowQualScore                  :                           33 2 0      8888  444   2 2 2 1       4        55      99  33 00000             5555 444  2 888  777777  77777777         2   5555  8888888 33    2      3   2        88888888 3 44 3   6  44   4444  1 1 3       5   4   0      666                    
lowQualScore                  :                           .. . .      ....  ...   . . . .       .        ..      ..  .. .....             .... ...  . ...  ......  ........         .   ....  ....... ..    .      .   .        ........ . .. .   .  ..   ....  . . .       .   .   .      ...                    
lowQualScore                  :                           22 4 5      6666  111   4 4 4 0       3        99      44  44 22222             7777 000  7 444  777777  11111111         7   7777  6666666 44    9      3   0        44444444 3 66 5   7  66   2222  0 0 4       0   6   5      444                    
consensus                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CGGA---AAT-T-T-TNCAGGAGGNGGAAAAAA--CTTTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCANATAAATAA--AC----A-A--CAACA-TC--AGT----ATGTCATCAAATGTNATTAATTTTGATTT---TATAACACATTTATCAAGTT
Reference ( family-860 )      : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CGGA---AAT-T-T-TNCAGGAGGNGGAAAAAA--CTTTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCANATAAATAA--AC----A-A--CAACA-TC--AGT----ATGTCATCAAATGTAATTAATTTTGATTT---TATAACACATTTATCAAGTT
gi|161014                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGACGGAAAAAA--CTTTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-GAAAACACCAAATAAATAA--AC----A-A--GAACA-TC--AGT----ATGTCATCAAATGTAATTAATTTTGCTTT---TATAACACATTTATCAAGTT
gi|161015                     : GAGGGCTCGGCGCATGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAAA-CATTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCATATAAATAA--AC----A-A--GAACA-TC--AGT----ATGTCATCAAATATAATAGATTTTGATTT---TATAACACATTTATCAAGTT
gi|161016                     : GATGGATTGGCGCAAGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAA--CTTTTT--TT--T-A--GTTTCACTTTTGGC----T---TT-AT--AA------TA------TTGTCTTTTCATTAT----AC-------AC-ATCT-TAAAACACAACATAAATAA--AC----A-A--CAACA-TC--AAG----ATGTCATCAAATGTAATTAATTTTGATTT---TATAACACATTTATCAATTT
gi|161017                     : GAGGGCTCGACGCAAGACTATTTTAA--C-TCACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAA--ATGTTT--TT--T-A--CTTTCAAGATTGAC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AT-------AC-ATCT-TAAAACACCATACAAATAA--AC----A-A--CAACA-TC--AGT----ATGTCATCAAATATAATTAATTTTGATAT---TATAACACATATATCAAGTT
gi|161018                     : GAGGGCTCGGTGCAAGACTATTCTAA--CTTGAT---------------T-T-T-TACAG--------AAAAT--GTTTTT--TTGAT-A--TTTT-----TTGG---------TT-AC--AA------T----------TCTTT--A-AAT----AC-------GCAATCTGTAAAATATTATA
gi|161019                     : GAGGGCTCGGCGCAAGACAATTCTAA--C-TCGCATTT--CAGA---ATT-T-T-TACAGGAAGTGGAAAAAAAACTTTGT--TT--T-A--GATTCAATATTGGC----T---TT-AT--AA------TACATGTATTGTCTTTTCA-TAT----AC-------AA-ATCT-TAAAACACCATAAAAATAA--AC----A-A--CAACA-TC--AGT----ATGTCATCAAATGTAATTAATTTTGATTT---TATAACACATTTATTAAGTT
gi|161020                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TCACATAT--CAGA---ATT-T-T-TACAGGCGG-----------------------------TTTTAATATTGGC----T---TG-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCATATAAATAA--AC----A-A--CAAAA-TC--AGT----ATGTCATCAAATGTAATTAATTTTGATTT---TAT
gi|161021                     : GAGGGCCGAGCGCAAAACTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTCAGGAGAAAGAAAAAA--CCTTTTA-AT--T-A---TTTTAATATAGGC----TCAATT-AA--AA------AA--------GTCTCTTCA-TCT----AC-------TG-GTGT-TAAATCTTAAAATAAATAA--TA----A-A--C-ACATTC--AAT----TTTTAAGCATTTTCTGTTTATTATGATTT---TATAAC
gi|161022                     : GAGGGCCGAGCGCAAAACTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTTAGGAGAATGAAACAA--CCTTTTAATT--T-----TTTTAATATAGGC----TCAATT-AA--AA------TA--------GTCTCTTCA-TCT----ACTGGTGCTAA-ATCT-TAAAA---TAAAT-AATAA--AC----ACATTCAATT-TTTAAGC----ATTT--TC---TGT--TT-ATTATGATTT---TATAACA
gi|161023                     : GAGAGCTTGGTGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGGAGGAAAAAA--CTGTTT--TT--T-A--TTTTCA
gi|161024                     : GAGGGCCGAGCGCAAATCTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTTAGGAGAAAGAAAAAA--CCTTTTAATT--T-----TTTTAATATAGGC----TCAATT-AA--AA------TA--------GTCTCTCCA-TCT----ACTGGTGCTAA-ATCT-TAAA-------ATAAATAA--GA----A-A--C-ACATTC--AAT----TTTTAAGCATTTTCTGTTCATTATGATTT---TATAA
gi|161025                     : GAAGGTTCGGCGTGAAACTATTGTAT--C-TGACATTT---GGA---AATAT-T-TTCAGGAGAAGGAAAAAT--CTTCTT--TC--TAA--GTTACAATATTGACCAAAT---TA-AT--AG------TAAAC---TTAGATTTTAA-TAT----
gi|161026                     : GAGGACTTGACGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGGAGGAAAAAA--ATGTTT--TT--T-A--TTTTC----TT--C----T---TT-A---AA------TA------T----TTTTGA-TA-----AT-------AT-TTTT-CAAAAT-TCAAATGAA-----------A-A--CTGCA-TT--ACTTACAATATTAACAAATGTTATCAATTcatttagtattacaatggcatggataa
gi|161027                     : GAGGGCTGGGCGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGAAGGAAAAAA--CTGTTT--TT--T-A--TTTTC----TT--C----T---TT-A---GA------TA------TT---TTTGC--TA-----AT-------AT-TTTT-CAAAAT-TCAAATGAA-----------A-A--CTGCA-TT--ACTTACAATATTAACAAGTGTTATCAATTAAAGTTTGAATATAAC
gi|161028                     : GAAGACTCATCGCAAAACTATTCTGA--C-T--CAGTTACCAGA---AAC-CAT-TATAAGATATGAAAAAAA----------------AAGGTTAAAATCTTGGC----T---TTAAC--AAATCTCTTA------ATCTCTTTACA-TAT----A--------AT--TCT-TTAAACATTCTATAAATAATTACATGTA-A--CAACT-TC--AAT----ATTGCA--AAACATGATT--TTTT--TTT---
gi|161029                     :      CTCAGCGCAAGACTATTCTAA--C-TTAAATTT--TAGAAGTAAT-T-T-T
gi|161030                     :            GCAAGACTATTCTAATCC-TGT--TTT--CAGA---AAA-A-TATATAGAAAATGGAAGTAA--CTTCGT--TT--A-A--GTTTTATTATTAGC----T---TT-ATGCAA-------A------TTGTCTCTTCA-TATAATAAC-------AC-ATCT-TAAAGTACTGTATCAATA





Alignments
lowQualScore                  :                                1                                                        11111                  111                 11111111                   1111111                                                 1111                                                    
lowQualScore                  :                           33 2 0      8888  444   2 2 2 1       4        55      99  33 00000             5555 444  2 888  777777  77777777         2   5555  8888888 33    2      333 2        88888888   5   6 3  0 4444  1   5     0 1   2   0      666                    
lowQualScore                  :                           .. . .      ....  ...   . . . .       .        ..      ..  .. .....             .... ...  . ...  ......  ........         .   ....  ....... ..    .      ... .        ........   .   . .  . ....  .   .     . .   .   .      ...                    
lowQualScore                  :                           22 4 5      6666  111   4 4 4 0       3        99      44  44 22222             7777 000  7 444  777777  11111111         7   7777  6666666 44    9      222 0        44444444   5   7 3  8 2222  0   4     2 0   7   5      444                    
consensus                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CGGA---AAT-T-T-TNCAGGAGGNGGAAAAAA--CTTTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCANATAAATAA--AC----AACAACA-T-CAGT----ATGTCANCAAATGTNATTAATTTTGATTT---TATAACACATTTATCAAGTT
Reference ( family-860 )      : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CGGA---AAT-T-T-TNCAGGAGGNGGAAAAAA--CTTTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCANATAAATAA--AC----AACAACA-T-CAGT----ATGTCATCAAATGTNATTAATTTTGATTT---TATAACACATTTATCAAGTT
gi|161014                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGACGGAAAAAA--CTTTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-GAAAACACCAAATAAATAA--AC----AAGAACA-T-CAGT----ATGTCATCAAATGTAATTAATTTTGCTTT---TATAACACATTTATCAAGTT
gi|161015                     : GAGGGCTCGGCGCATGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAAA-CATTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCATATAAATAA--AC----AAGAACA-T-CAGT----ATGTCATCAAATATAATAGATTTTGATTT---TATAACACATTTATCAAGTT
gi|161016                     : GATGGATTGGCGCAAGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAA--CTTTTT--TT--T-A--GTTTCACTTTTGGC----T---TT-AT--AA------TA------TTGTCTTTTCATTAT----AC-------AC-ATCT-TAAAACACAACATAAATAA--AC----AACAACA-T-CAAG----ATGTCATCAAATGTAATTAATTTTGATTT---TATAACACATTTATCAATTT
gi|161017                     : GAGGGCTCGACGCAAGACTATTTTAA--C-TCACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAA--ATGTTT--TT--T-A--CTTTCAAGATTGAC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AT-------AC-ATCT-TAAAACACCATACAAATAA--AC----AACAACA-T-CAGT----ATGTCATCAAATATAATTAATTTTGATAT---TATAACACATATATCAAGTT
gi|161018                     : GAGGGCTCGGTGCAAGACTATTCTAA--CTTGAT---------------T-T-T-TACAG--------AAAAT--GTTTTT--TTGAT-A--TTTT-----TTGG---------TT-AC--AA------T----------TCTTT--A-AAT----AC-------GCAATCTGTAAAATATTATA
gi|161019                     : GAGGGCTCGGCGCAAGACAATTCTAA--C-TCGCATTT--CAGA---ATT-T-T-TACAGGAAGTGGAAAAAAAACTTTGT--TT--T-A--GATTCAATATTGGC----T---TT-AT--AA------TACATGTATTGTCTTTTCA-TAT----AC-------AA-ATCT-TAAAACACCATAAAAATAA--AC----AACAACA-T-CAGT----ATGTCATCAAATGTAATTAATTTTGATTT---TATAACACATTTATTAAGTT
gi|161020                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TCACATAT--CAGA---ATT-T-T-TACAGGCGG-----------------------------TTTTAATATTGGC----T---TG-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCATATAAATAA--AC----AACAAAA-T-CAGT----ATGTCATCAAATGTAATTAATTTTGATTT---TAT
gi|161021                     : GAGGGCCGAGCGCAAAACTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTCAGGAGAAAGAAAAAA--CCTTTTA-AT--T-A---TTTTAATATAGGC----TCAATT-AA--AA------AA--------GTCTCTTCA-TCT----AC-------TG-GTGT-TAAATCTTAAAATAAATAA--TA----AAC-ACATT-CAAT----TTTTAAGCATTTTCTGTTTATTATGATTT---TATAAC
gi|161022                     : GAGGGCCGAGCGCAAAACTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTTAGGAGAATGAAACAA--CCTTTTAATT--T-----TTTTAATATAGGC----TCAATT-AA--AA------TA--------GTCTCTTCA-TCT----ACTGGTGCTAA-ATCT-TAAAATA---AATAA-TAA--AC----A----CA-TTCAAT----TTTTAAGCATTTTCTGTTTATTATGATTT---TATAACA
gi|161023                     : GAGAGCTTGGTGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGGAGGAAAAAA--CTGTTT--TT--T-A--TTTTCA
gi|161024                     : GAGGGCCGAGCGCAAATCTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTTAGGAGAAAGAAAAAA--CCTTTTAATT--T-----TTTTAATATAGGC----TCAATT-AA--AA------TA--------GTCTCTCCA-TCT----ACTGGTGCTAA-ATCT-TAAA-------ATAAATAA--GA----AAC-ACATT-CAAT----TTTTAAGCATTTTCTGTTCATTATGATTT---TATAA
gi|161025                     : GAAGGTTCGGCGTGAAACTATTGTAT--C-TGACATTT---GGA---AATAT-T-TTCAGGAGAAGGAAAAAT--CTTCTT--TC--TAA--GTTACAATATTGACCAAAT---TA-AT--AG------TAAAC---TTAGATTTTAA-TAT----
gi|161026                     : GAGGACTTGACGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGGAGGAAAAAA--ATGTTT--TT--T-A--TTTTC----TT--C----T---TT-A---AA------TA------T----TTTTGA-TA-----AT-------AT-TTTT-CAAAAT-TCAAATGAA-----------AACTGCA-T-TACTTACAATATTAACAAATGTTATCAATTcatttagtattacaatggcatggataa
gi|161027                     : GAGGGCTGGGCGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGAAGGAAAAAA--CTGTTT--TT--T-A--TTTTC----TT--C----T---TT-A---GA------TA------TT---TTTGC--TA-----AT-------AT-TTTT-CAAAAT-TCAAATGAA-----------AACTGCA-T-TACTTACAATATTAACAAGTGTTATCAATTAAAGTTTGAATATAAC
gi|161028                     : GAAGACTCATCGCAAAACTATTCTGA--C-T--CAGTTACCAGA---AAC-CAT-TATAAGATATGAAAAAAA----------------AAGGTTAAAATCTTGGC----T---TTAAC--AAATCTCTTA------ATCTCTTTACA-TAT----A--------AT--TCT-TTAAACATTCTATAAATAATTACATGTAACAACT-T-CAAT----ATTGCA--AAACATGATT--TTTT--TTT---
gi|161029                     :      CTCAGCGCAAGACTATTCTAA--C-TTAAATTT--TAGAAGTAAT-T-T-T
gi|161030                     :            GCAAGACTATTCTAATCC-TGT--TTT--CAGA---AAA-A-TATATAGAAAATGGAAGTAA--CTTCGT--TT--A-A--GTTTTATTATTAGC----T---TT-ATGCAA-------A------TTGTCTCTTCA-TATAATAAC-------AC-ATCT-TAAAGTACTGTATCAATA





Alignments
lowQualScore                  :                                1                                                        11111                  111                 11111111                   1111111                                          1     1111                                                    
lowQualScore                  :                           33 2 0      8888  444   2 2 2 1       4        55      99  33 00000             5555 444  2 888  777777  77777777         2   5555  8888888 33    2      3   2        88888888   5   0   0 4444  1   4     0 1   2   0      666                    
lowQualScore                  :                           .. . .      ....  ...   . . . .       .        ..      ..  .. .....             .... ...  . ...  ......  ........         .   ....  ....... ..    .      .   .        ........   .   .   . ....  .   .     . .   .   .      ...                    
lowQualScore                  :                           22 4 5      6666  111   4 4 4 0       3        99      44  44 22222             7777 000  7 444  777777  11111111         7   7777  6666666 44    9      3   0        44444444   5   0   8 2222  0   2     2 0   7   5      444                    
consensus                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CGGA---AAT-T-T-TNCAGGAGGNGGAAAAAA--CTTTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCANATAAATAA--AC----AACAACA-TCAGT----ATGTCANCAAATGTNATTAATTTTGATTT---TATAACACATTTATCAAGTT
Reference ( family-860 )      : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CGGA---AAT-T-T-TNCAGGAGGNGGAAAAAA--CTTTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCANATAAATAA--AC----AACAACA-TCAGT----ATGTCANCAAATGTNATTAATTTTGATTT---TATAACACATTTATCAAGTT
gi|161014                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGACGGAAAAAA--CTTTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-GAAAACACCAAATAAATAA--AC----AAGAACA-TCAGT----ATGTCATCAAATGTAATTAATTTTGCTTT---TATAACACATTTATCAAGTT
gi|161015                     : GAGGGCTCGGCGCATGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAAA-CATTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCATATAAATAA--AC----AAGAACA-TCAGT----ATGTCATCAAATATAATAGATTTTGATTT---TATAACACATTTATCAAGTT
gi|161016                     : GATGGATTGGCGCAAGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAA--CTTTTT--TT--T-A--GTTTCACTTTTGGC----T---TT-AT--AA------TA------TTGTCTTTTCATTAT----AC-------AC-ATCT-TAAAACACAACATAAATAA--AC----AACAACA-TCAAG----ATGTCATCAAATGTAATTAATTTTGATTT---TATAACACATTTATCAATTT
gi|161017                     : GAGGGCTCGACGCAAGACTATTTTAA--C-TCACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAA--ATGTTT--TT--T-A--CTTTCAAGATTGAC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AT-------AC-ATCT-TAAAACACCATACAAATAA--AC----AACAACA-TCAGT----ATGTCATCAAATATAATTAATTTTGATAT---TATAACACATATATCAAGTT
gi|161018                     : GAGGGCTCGGTGCAAGACTATTCTAA--CTTGAT---------------T-T-T-TACAG--------AAAAT--GTTTTT--TTGAT-A--TTTT-----TTGG---------TT-AC--AA------T----------TCTTT--A-AAT----AC-------GCAATCTGTAAAATATTATA
gi|161019                     : GAGGGCTCGGCGCAAGACAATTCTAA--C-TCGCATTT--CAGA---ATT-T-T-TACAGGAAGTGGAAAAAAAACTTTGT--TT--T-A--GATTCAATATTGGC----T---TT-AT--AA------TACATGTATTGTCTTTTCA-TAT----AC-------AA-ATCT-TAAAACACCATAAAAATAA--AC----AACAACA-TCAGT----ATGTCATCAAATGTAATTAATTTTGATTT---TATAACACATTTATTAAGTT
gi|161020                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TCACATAT--CAGA---ATT-T-T-TACAGGCGG-----------------------------TTTTAATATTGGC----T---TG-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCATATAAATAA--AC----AACAAAA-TCAGT----ATGTCATCAAATGTAATTAATTTTGATTT---TAT
gi|161021                     : GAGGGCCGAGCGCAAAACTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTCAGGAGAAAGAAAAAA--CCTTTTA-AT--T-A---TTTTAATATAGGC----TCAATT-AA--AA------AA--------GTCTCTTCA-TCT----AC-------TG-GTGT-TAAATCTTAAAATAAATAA--TA----AAC-ACATTCAAT----TTTTAAGCATTTTCTGTTTATTATGATTT---TATAAC
gi|161022                     : GAGGGCCGAGCGCAAAACTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTTAGGAGAATGAAACAA--CCTTTTAATT--T-----TTTTAATATAGGC----TCAATT-AA--AA------TA--------GTCTCTTCA-TCT----ACTGGTGCTAA-ATCT-TAAAA---TAAAT-AATAA--AC--------ACATTCAAT----TTTTAAGCATTTTCTGTTTATTATGATTT---TATAACA
gi|161023                     : GAGAGCTTGGTGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGGAGGAAAAAA--CTGTTT--TT--T-A--TTTTCA
gi|161024                     : GAGGGCCGAGCGCAAATCTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTTAGGAGAAAGAAAAAA--CCTTTTAATT--T-----TTTTAATATAGGC----TCAATT-AA--AA------TA--------GTCTCTCCA-TCT----ACTGGTGCTAA-ATCT-TAAA-------ATAAATAA--GA----AAC-ACATTCAAT----TTTTAAGCATTTTCTGTTCATTATGATTT---TATAA
gi|161025                     : GAAGGTTCGGCGTGAAACTATTGTAT--C-TGACATTT---GGA---AATAT-T-TTCAGGAGAAGGAAAAAT--CTTCTT--TC--TAA--GTTACAATATTGACCAAAT---TA-AT--AG------TAAAC---TTAGATTTTAA-TAT----
gi|161026                     : GAGGACTTGACGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGGAGGAAAAAA--ATGTTT--TT--T-A--TTTTC----TT--C----T---TT-A---AA------TA------T----TTTTGA-TA-----AT-------AT-TTTT-CAAAAT-TCAAATGAA-----------AACTGCA-TTACTTACAATATTAACAAATGTTATCAATTcatttagtattacaatggcatggataa
gi|161027                     : GAGGGCTGGGCGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGAAGGAAAAAA--CTGTTT--TT--T-A--TTTTC----TT--C----T---TT-A---GA------TA------TT---TTTGC--TA-----AT-------AT-TTTT-CAAAAT-TCAAATGAA-----------AACTGCA-TTACTTACAATATTAACAAGTGTTATCAATTAAAGTTTGAATATAAC
gi|161028                     : GAAGACTCATCGCAAAACTATTCTGA--C-T--CAGTTACCAGA---AAC-CAT-TATAAGATATGAAAAAAA----------------AAGGTTAAAATCTTGGC----T---TTAAC--AAATCTCTTA------ATCTCTTTACA-TAT----A--------AT--TCT-TTAAACATTCTATAAATAATTACATGTAACAACT-TCAAT----ATTGCA--AAACATGATT--TTTT--TTT---
gi|161029                     :      CTCAGCGCAAGACTATTCTAA--C-TTAAATTT--TAGAAGTAAT-T-T-T
gi|161030                     :            GCAAGACTATTCTAATCC-TGT--TTT--CAGA---AAA-A-TATATAGAAAATGGAAGTAA--CTTCGT--TT--A-A--GTTTTATTATTAGC----T---TT-ATGCAA-------A------TTGTCTCTTCA-TATAATAAC-------AC-ATCT-TAAAGTACTGTATCAATA





Alignments
lowQualScore                  :                                1                                                        11111                  111                 11111111                   1111111                                          1     1111                                                    
lowQualScore                  :                           33 2 0      8888  444   2 2 2 1       4        55      99  33 00000             5555 444  2 888  777777  77777777         2   5555  8888888 33    2      3   2        88888888   5   0   0 4444  1   4     0 1   2   0      666                    
lowQualScore                  :                           .. . .      ....  ...   . . . .       .        ..      ..  .. .....             .... ...  . ...  ......  ........         .   ....  ....... ..    .      .   .        ........   .   .   . ....  .   .     . .   .   .      ...                    
lowQualScore                  :                           22 4 5      6666  111   4 4 4 0       3        99      44  44 22222             7777 000  7 444  777777  11111111         7   7777  6666666 44    9      3   0        44444444   5   0   8 2222  0   2     2 0   7   5      444                    
consensus                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CGGA---AAT-T-T-TNCAGGAGGNGGAAAAAA--CTTTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCANATAAATAA--AC----AACAACA-TCAGT----ATGTCANCAAATGTNATTAATTTTGATTT---TATAACACATTTATCAAGTT
Reference ( family-860 )      : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CGGA---AAT-T-T-TNCAGGAGGNGGAAAAAA--CTTTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCANATAAATAA--AC----AACAACA-TCAGT----ATGTCANCAAATGTNATTAATTTTGATTT---TATAACACATTTATCAAGTT
gi|161014                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGACGGAAAAAA--CTTTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-GAAAACACCAAATAAATAA--AC----AAGAACA-TCAGT----ATGTCATCAAATGTAATTAATTTTGCTTT---TATAACACATTTATCAAGTT
gi|161015                     : GAGGGCTCGGCGCATGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAAA-CATTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCATATAAATAA--AC----AAGAACA-TCAGT----ATGTCATCAAATATAATAGATTTTGATTT---TATAACACATTTATCAAGTT
gi|161016                     : GATGGATTGGCGCAAGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAA--CTTTTT--TT--T-A--GTTTCACTTTTGGC----T---TT-AT--AA------TA------TTGTCTTTTCATTAT----AC-------AC-ATCT-TAAAACACAACATAAATAA--AC----AACAACA-TCAAG----ATGTCATCAAATGTAATTAATTTTGATTT---TATAACACATTTATCAATTT
gi|161017                     : GAGGGCTCGACGCAAGACTATTTTAA--C-TCACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAA--ATGTTT--TT--T-A--CTTTCAAGATTGAC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AT-------AC-ATCT-TAAAACACCATACAAATAA--AC----AACAACA-TCAGT----ATGTCATCAAATATAATTAATTTTGATAT---TATAACACATATATCAAGTT
gi|161018                     : GAGGGCTCGGTGCAAGACTATTCTAA--CTTGAT---------------T-T-T-TACAG--------AAAAT--GTTTTT--TTGAT-A--TTTT-----TTGG---------TT-AC--AA------T----------TCTTT--A-AAT----AC-------GCAATCTGTAAAATATTATA
gi|161019                     : GAGGGCTCGGCGCAAGACAATTCTAA--C-TCGCATTT--CAGA---ATT-T-T-TACAGGAAGTGGAAAAAAAACTTTGT--TT--T-A--GATTCAATATTGGC----T---TT-AT--AA------TACATGTATTGTCTTTTCA-TAT----AC-------AA-ATCT-TAAAACACCATAAAAATAA--AC----AACAACA-TCAGT----ATGTCATCAAATGTAATTAATTTTGATTT---TATAACACATTTATTAAGTT
gi|161020                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TCACATAT--CAGA---ATT-T-T-TACAGGCGG-----------------------------TTTTAATATTGGC----T---TG-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCATATAAATAA--AC----AACAAAA-TCAGT----ATGTCATCAAATGTAATTAATTTTGATTT---TAT
gi|161021                     : GAGGGCCGAGCGCAAAACTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTCAGGAGAAAGAAAAAA--CCTTTTA-AT--T-A---TTTTAATATAGGC----TCAATT-AA--AA------AA--------GTCTCTTCA-TCT----AC-------TG-GTGT-TAAATCTTAAAATAAATAA--TA----AAC-ACATTCAAT----TTTTAAGCATTTTCTGTTTATTATGATTT---TATAAC
gi|161022                     : GAGGGCCGAGCGCAAAACTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTTAGGAGAATGAAACAA--CCTTTTAATT--T-----TTTTAATATAGGC----TCAATT-AA--AA------TA--------GTCTCTTCA-TCT----ACTGGTGCTAA-ATCT-TAAAA---TAAAT-AATAA--AC--------ACATTCAAT----TTTTAAGCATTTTCTGTTTATTATGATTT---TATAACA
gi|161023                     : GAGAGCTTGGTGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGGAGGAAAAAA--CTGTTT--TT--T-A--TTTTCA
gi|161024                     : GAGGGCCGAGCGCAAATCTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTTAGGAGAAAGAAAAAA--CCTTTTAATT--T-----TTTTAATATAGGC----TCAATT-AA--AA------TA--------GTCTCTCCA-TCT----ACTGGTGCTAA-ATCT-TAAA-------ATAAATAA--GA----AAC-ACATTCAAT----TTTTAAGCATTTTCTGTTCATTATGATTT---TATAA
gi|161025                     : GAAGGTTCGGCGTGAAACTATTGTAT--C-TGACATTT---GGA---AATAT-T-TTCAGGAGAAGGAAAAAT--CTTCTT--TC--TAA--GTTACAATATTGACCAAAT---TA-AT--AG------TAAAC---TTAGATTTTAA-TAT----
gi|161026                     : GAGGACTTGACGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGGAGGAAAAAA--ATGTTT--TT--T-A--TTTTC----TT--C----T---TT-A---AA------TA------T----TTTTGA-TA-----AT-------AT-TTTT-CAAAAT-TCAAATGAA-----------AACTGCA-TTACTTACAATATTAACAAATGTTATCAATTcatttagtattacaatggcatggataa
gi|161027                     : GAGGGCTGGGCGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGAAGGAAAAAA--CTGTTT--TT--T-A--TTTTC----TT--C----T---TT-A---GA------TA------TT---TTTGC--TA-----AT-------AT-TTTT-CAAAAT-TCAAATGAA-----------AACTGCA-TTACTTACAATATTAACAAGTGTTATCAATTAAAGTTTGAATATAAC
gi|161028                     : GAAGACTCATCGCAAAACTATTCTGA--C-T--CAGTTACCAGA---AAC-CAT-TATAAGATATGAAAAAAA----------------AAGGTTAAAATCTTGGC----T---TTAAC--AAATCTCTTA------ATCTCTTTACA-TAT----A--------AT--TCT-TTAAACATTCTATAAATAATTACATGTAACAACT-TCAAT----ATTGCA--AAACATGATT--TTTT--TTT---
gi|161029                     :      CTCAGCGCAAGACTATTCTAA--C-TTAAATTT--TAGAAGTAAT-T-T-T
gi|161030                     :            GCAAGACTATTCTAATCC-TGT--TTT--CAGA---AAA-A-TATATAGAAAATGGAAGTAA--CTTCGT--TT--A-A--GTTTTATTATTAGC----T---TT-ATGCAA-------A------TTGTCTCTTCA-TATAATAAC-------AC-ATCT-TAAAGTACTGTATCAATA


blockSeqs                     :                           TC T G      ACCA  AGT   A A A A       T        AA      AA  GA AAGG              CAAA CAA  A TGC  ATCTCT  CATGTATT         T   AATA  TGGTGCT CA    G      A   T        TTACATGT   A   T     TACA  G   T       A   G          GAA
blockSeqs                     :                           .  . G      CA    .     . . . A       T        A       AA  .  AAG               .    CAA  . T    .       AACTT            .   .     TGGTGCT C     .      A   C        AC         A   T     TACA  G   T       A   A          .  
blockSeqs                     :                           .  . C      CA    .     . . . A       T        .       A   .  AG                .    CAA  . T    .       TT               .   .     .       C     .      A   T        AC         A   T     .     G   T       A   A          .  
blockSeqs                     :                           .  . G      CA    .     . . . A       T        .       .   .  AG                .    .    . T    .       TT               .   .     .       C     .      A   T        AC         A   .     .     G   T       A   A          .  
blockSeqs                     :                           .  . C      CA    .     . . . A       A        .       .   .  AC                .    .    . C    .       TT               .   .     .       A     .      A   T        AC         A   .     .     G   T       A   A          .  
blockSeqs                     :                           .  . C      CA    .     . . . A       A        .       .   .  AT                .    .    . T    .       TT               .   .     .       C     .      A   T        AC         T   .     .     T   G       T   T          .  
blockSeqs                     :                           .  . A      TC    .     . . . T       A        .       .   .  AG                .    .    . T    .       TT               .   .     .       G     .      T   A        TA         T   .     .     T   G       T   T          .  
blockSeqs                     :                           .  . G      TC    .     . . . T       A        .       .   .  AT                .    .    . A    .       AT               .   .     .       A     .      A   A        AC         A   .     .     T   G       T   C          .  
blockSeqs                     :                           .  . A      TG    .     . . . T       A        .       .   .  AT                .    .    . A    .       TT               .   .     .       A     .      A   A        GA         .   .     .     A   A       T   A          .  
blockSeqs                     :                           .  . A      TC    .     . . . T       A        .       .   .  AT                .    .    . A    .       T                .   .     .       T     .      .   A        .          .   .     .     A   A       T   A          .  
blockSeqs                     :                           .  . T      TG    .     . . . T       A        .       .   .  AG                .    .    . T    .       .                .   .     .       T     .      .   T        .          .   .     .     T   .       G   .             
blockSeqs                     :                           .  . G      TG    .     . . . T       T        .       .   .  A                 .    .    . C    .       .                .   .     .       T     .      .   T                                                                 
blockSeqs                     :                           .  . .      TA    .     . . . T       T        .       .   .  .                 .    .    . .    .       .                .   .     .       C     .      .   .                                                                 
blockSeqs                     :                           .  . .      CA    .     . . . A       .        .       .   .  .                 .    .    . .    .       .                .   .                                                                                                
blockSeqs                     :                           .  . .      G     .     . . . A       .        .       .   .  .                                                                                                                                                                
blockSeqs                     :                           .  . .      .     .     . . .                                                                                                                                                                                                  


blockSeqCons                  : 
originalCons                  : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CGGA---AAT-T-T-TNCAGGAGGNGGAAAAAA--CTTTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCANATAAATAA--AC----AACAACA-TCAGT----ATGTCANCAAATGTNATTAATTTTGATTT---TATAACACATTTATCAAGTT
finalCons                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CGGA---AAT-T-T-TNCAGGAGGNGGAAAAAA--CTTTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCANATAAATAA--AC----AACAACA-TCAGT----ATGTCANCAAATGTNATTAATTTTGATTT---TATAACACATTTATCAAGTT





Alignments
lowQualScore                  :                                1                                                        11111                  111                 11111111                   1111111                                          1     1111                                                    
lowQualScore                  :                           33 2 0      8888  444   2 2 2 1       4        55      99  33 00000             5555 444  2 888  777777  77777777         2   5555  8888888 33    2      3   2        88888888   5   0   0 4444  1   4     0 1   2   0      666                    
lowQualScore                  :                           .. . .      ....  ...   . . . .       .        ..      ..  .. .....             .... ...  . ...  ......  ........         .   ....  ....... ..    .      .   .        ........   .   .   . ....  .   .     . .   .   .      ...                    
lowQualScore                  :                           22 4 5      6666  111   4 4 4 0       3        99      44  44 22222             7777 000  7 444  777777  11111111         7   7777  6666666 44    9      3   0        44444444   5   0   8 2222  0   2     2 0   7   5      444                    
consensus                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CGGA---AAT-T-T-TNCAGGAGGNGGAAAAAA--CTTTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCANATAAATAA--AC----AACAACA-TCAGT----ATGTCANCAAATGTNATTAATTTTGATTT---TATAACACATTTATCAAGTT
Reference ( family-860 )      : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CGGA---AAT-T-T-TNCAGGAGGNGGAAAAAA--CTTTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCANATAAATAA--AC----AACAACA-TCAGT----ATGTCANCAAATGTNATTAATTTTGATTT---TATAACACATTTATCAAGTT
gi|161014                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGACGGAAAAAA--CTTTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-GAAAACACCAAATAAATAA--AC----AAGAACA-TCAGT----ATGTCATCAAATGTAATTAATTTTGCTTT---TATAACACATTTATCAAGTT
gi|161015                     : GAGGGCTCGGCGCATGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAAA-CATTTT--TT--T-A--GTTTCAATATTGGC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCATATAAATAA--AC----AAGAACA-TCAGT----ATGTCATCAAATATAATAGATTTTGATTT---TATAACACATTTATCAAGTT
gi|161016                     : GATGGATTGGCGCAAGACTATTCTAA--C-TGACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAA--CTTTTT--TT--T-A--GTTTCACTTTTGGC----T---TT-AT--AA------TA------TTGTCTTTTCATTAT----AC-------AC-ATCT-TAAAACACAACATAAATAA--AC----AACAACA-TCAAG----ATGTCATCAAATGTAATTAATTTTGATTT---TATAACACATTTATCAATTT
gi|161017                     : GAGGGCTCGACGCAAGACTATTTTAA--C-TCACATTT--CAGA---AAT-T-T-TACAGGAGGTGGAAAAAA--ATGTTT--TT--T-A--CTTTCAAGATTGAC----T---TT-AT--AA------TA------TTGTCTTTTCA-TAT----AT-------AC-ATCT-TAAAACACCATACAAATAA--AC----AACAACA-TCAGT----ATGTCATCAAATATAATTAATTTTGATAT---TATAACACATATATCAAGTT
gi|161018                     : GAGGGCTCGGTGCAAGACTATTCTAA--CTTGAT---------------T-T-T-TACAG--------AAAAT--GTTTTT--TTGAT-A--TTTT-----TTGG---------TT-AC--AA------T----------TCTTT--A-AAT----AC-------GCAATCTGTAAAATATTATA
gi|161019                     : GAGGGCTCGGCGCAAGACAATTCTAA--C-TCGCATTT--CAGA---ATT-T-T-TACAGGAAGTGGAAAAAAAACTTTGT--TT--T-A--GATTCAATATTGGC----T---TT-AT--AA------TACATGTATTGTCTTTTCA-TAT----AC-------AA-ATCT-TAAAACACCATAAAAATAA--AC----AACAACA-TCAGT----ATGTCATCAAATGTAATTAATTTTGATTT---TATAACACATTTATTAAGTT
gi|161020                     : GAGGGCTCGGCGCAAGACTATTCTAA--C-TCACATAT--CAGA---ATT-T-T-TACAGGCGG-----------------------------TTTTAATATTGGC----T---TG-AT--AA------TA------TTGTCTTTTCA-TAT----AC-------AC-ATCT-TAAAACACCATATAAATAA--AC----AACAAAA-TCAGT----ATGTCATCAAATGTAATTAATTTTGATTT---TAT
gi|161021                     : GAGGGCCGAGCGCAAAACTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTCAGGAGAAAGAAAAAA--CCTTTTA-AT--T-A---TTTTAATATAGGC----TCAATT-AA--AA------AA--------GTCTCTTCA-TCT----AC-------TG-GTGT-TAAATCTTAAAATAAATAA--TA----AAC-ACATTCAAT----TTTTAAGCATTTTCTGTTTATTATGATTT---TATAAC
gi|161022                     : GAGGGCCGAGCGCAAAACTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTTAGGAGAATGAAACAA--CCTTTTAATT--T-----TTTTAATATAGGC----TCAATT-AA--AA------TA--------GTCTCTTCA-TCT----ACTGGTGCTAA-ATCT-TAAAA---TAAAT-AATAA--AC--------ACATTCAAT----TTTTAAGCATTTTCTGTTTATTATGATTT---TATAACA
gi|161023                     : GAGAGCTTGGTGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGGAGGAAAAAA--CTGTTT--TT--T-A--TTTTCA
gi|161024                     : GAGGGCCGAGCGCAAATCTATTCTAA--C-T-ACATTT--TCAA---CAT-T-T-TTTAGGAGAAAGAAAAAA--CCTTTTAATT--T-----TTTTAATATAGGC----TCAATT-AA--AA------TA--------GTCTCTCCA-TCT----ACTGGTGCTAA-ATCT-TAAA-------ATAAATAA--GA----AAC-ACATTCAAT----TTTTAAGCATTTTCTGTTCATTATGATTT---TATAA
gi|161025                     : GAAGGTTCGGCGTGAAACTATTGTAT--C-TGACATTT---GGA---AATAT-T-TTCAGGAGAAGGAAAAAT--CTTCTT--TC--TAA--GTTACAATATTGACCAAAT---TA-AT--AG------TAAAC---TTAGATTTTAA-TAT----
gi|161026                     : GAGGACTTGACGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGGAGGAAAAAA--ATGTTT--TT--T-A--TTTTC----TT--C----T---TT-A---AA------TA------T----TTTTGA-TA-----AT-------AT-TTTT-CAAAAT-TCAAATGAA-----------AACTGCA-TTACTTACAATATTAACAAATGTTATCAATTcatttagtattacaatggcatggataa
gi|161027                     : GAGGGCTGGGCGCAAAACTATTGTAA--C-TAGGTTTT--TGCA---AAT-T-G-TTCAGGAGAAGGAAAAAA--CTGTTT--TT--T-A--TTTTC----TT--C----T---TT-A---GA------TA------TT---TTTGC--TA-----AT-------AT-TTTT-CAAAAT-TCAAATGAA-----------AACTGCA-TTACTTACAATATTAACAAGTGTTATCAATTAAAGTTTGAATATAAC
gi|161028                     : GAAGACTCATCGCAAAACTATTCTGA--C-T--CAGTTACCAGA---AAC-CAT-TATAAGATATGAAAAAAA----------------AAGGTTAAAATCTTGGC----T---TTAAC--AAATCTCTTA------ATCTCTTTACA-TAT----A--------AT--TCT-TTAAACATTCTATAAATAATTACATGTAACAACT-TCAAT----ATTGCA--AAACATGATT--TTTT--TTT---
gi|161029                     :      CTCAGCGCAAGACTATTCTAA--C-TTAAATTT--TAGAAGTAAT-T-T-T
gi|161030                     :            GCAAGACTATTCTAATCC-TGT--TTT--CAGA---AAA-A-TATATAGAAAATGGAAGTAA--CTTCGT--TT--A-A--GTTTTATTATTAGC----T---TT-ATGCAA-------A------TTGTCTCTTCA-TATAATAAC-------AC-ATCT-TAAAGTACTGTATCAATA