lowQualScore : 1111 1111111 33333 1
lowQualScore : 0 6 4 66 44 0000 5 2 5 33 7777 3 9 77 6 7777777 777 1 55555 6 8 4
lowQualScore : . . . .. .. .... . . . .. .... . . .. . ....... ... . ..... . . .
lowQualScore : 2 1 7 99 22 6666 0 5 0 44 8888 1 2 44 0 0000000 888 7 99999 0 6 0
consensus : CCATATGGCATATGCAAAANA-TAAAT--GACC-TCATA----TGGCATAT-G-C--AAAA----AAT-ACTTTTNCCTATATGG-------A---GAAAATAAAGTTTAAGATTGCGAGTCTCTAATTGTATGTATATCTCTAATTTTGAGTAGGAAAATGGTCAAACTGCATNAAAG
Reference ( gi|23694 ) : CCATATGGCATATGCAAAATA-TAAAT--GACC-TCATA----TGGCGTAT-G-C--AAAA----AAT-ACTTTTTTCTATACGG-------A---GAAAATAAAGTTTAAGATTGTGAGTCTCTAATTGTGTGATTATCTCTAATTTTGAGTAAGCAAATGGTCAAACTGCATTAAAG
gi|23685 : CCATAGGGCATATTCAAAATA-TAAAT--GACC-TCATA----TGGCATAT-G-C--AACA----AAT-GCTTTTTTCTATATGG-------A---GAAAATAAAGTTCAAGATTGCGAGTCTTTAATTGTATGTATATCTCTAATTTTGAGTAGGAAAATGGTCAAACTGCAT
gi|23686 : acCCATATGGCATATGCAAAATA-TCAAT--GACC-TCATAATTATGGCATAT-G-C--AAAA----AAA-ACTTTTT-CTATATGG-------A---AAAAATAAAGTTTAAGATTGTGAGTCTCTAATTGTATGTATATCTCTAATTTTGAGTAGG-AAATGGTCAAACTGTATAAAAG
gi|23690 : acCCATATGCCATATGCTAAATA-TAGAT--GAGC-CCATA----TGGCATAT-G-C--AAAA----AAT-ACGTTTATCTATATGG-------A---GAAAA-AAAGTTTAAGATTGCGAGTCTCTAATTGTATGTATATCTCAAATTTTGAGCAGGAAAATGGCCAAACTGCATAAAAG
gi|23688 : cCCATATGGCATATGTAAACTA-TAAAT--TACT-TCATA----TGGCATAT-A-G--AAAAC---AAA-A----TTTCTATATGA-------A---GAAAATAAAGTT-AAGATTGCAAGTCTCTAATTGTATTTATATCTCTAATTTTGAGTAGGAAAATGGTCAAACTGCATTAAAG
gi|23689 : acCTATATGGCATATG-AAAATA-AAAATTAGGCC--CATA----TGGCATAT-G-C--AAAA----AA
gi|23693 : cCTATATGGCATGGGCAAAAAA-TAAAT--GGGC-CCATT----TGGCATAT-G-C--AAAA----A
gi|23691 : cCTATATGGCATAAGTAAAAAAGTAAAT--GGGT-CCATA----TGGCATAT-G-C--AAAA----AAA-AC
gi|23692 : cCTATATGGCATATGCAAAA-A-TATATTGGGCC--CATA----TGGCATAT-G-C--AACA----AA
gi|23700 : cCATATGGCATATGCAAAAAA-TA
gi|23687 : tgtgaaaaatataaatgacctATATGATATATGTAAAATT-TAATT--GACC-TCATA----TGGCACAT-G-C--GAAA----AAT-ACTTTATTCTATATGG-------A---GAAAATAAAGTTTAAGATTGCGAGTCTCTAGTTGTGTTTATATCTCTAATTTTGAGTAGGAAAATGGTGAAACTGCATAAAAGcttttttctatatggagaaaataaagcttaagattgtatgtatatctgtaattttgattaggaaaatggtcaaaccgcattaaaag
gi|23695 : accgATATGGCATATGCAAAAAAATAAAT--GGGC-CCATAATTATGGCATAT-G-C--AAAA----AAA-ACT
gi|23701 : TATGGCGTATGCAAAATA-TAAAT--GAC
gi|23696 : ATAGCATATGGAAAAAA-TCAAT--AACC-TCATA----TGGCATATGG-C--AAAA----AAT-A-TTTTGCCTATATGGC------ATATGAAAATAAAAATTAGGgtatggagaaaataaagtttaagattgcgagtctcttattgtatgtatatctccaattttgagtaggaaaatggtcaaactgcattgaag
gi|23697 : ATAGCATATGGAAAAAA-TCAAT--AACT-TGATA----TGGCATAT-GCC--AAAA----AAT-A-TTTAGCCTATATGG-------
gi|23698 : ATAGCATTTGCAAAAAA-TCAAT---ACC-TGATA----TGGCATAT-GCC--AAAA----AAT-A-TTTTGCCTATA
gi|23699 : ATAGCATATGCAAAAAA-TCAAT--AACCGT--TA----TGGCATAT-G-CCAAAAA----AAT-A-TTTCGCCTATATGGCATGGGCA---AAAAATAAAt
gi|23700 : TGTGAAAAATA-TAAAT--GACC-TCATA----TGGCATAT-G-C--AAAA----AAT-ACTTTTTTCTATATGG-------A---GAAAATAAAGCTTAAGATTGTA----------TGTA----TATCTGTAATTTTGATTAGGAAAATGGTCAAACCGCATTAAA
gi|23701 : TA----TGGCGTAT-G-C--AAAATATAAATGAC--------GTATGG-------A---GAAAATAAAGTTTAAGATTGCGAGTCTCTTATTGTATGTATATCTCCAATTTTGAGTAGGAAAATGGTCAAACTGCATTGAAGag
Alignments
lowQualScore : 1111 1111111
lowQualScore : 0 3 5 66 33 0000 2 4 33 7 66 5555555 777 0 1
lowQualScore : . . . .. .. .... . . .. . .. ....... ... . .
lowQualScore : 8 4 0 99 44 0000 4 7 22 9 99 5555555 000 1 0
consensus : CCATATGGCATATGCAAAANA-TAAAT--GACC-TCATA----TGGCATAT-G-C--AAAAAATACTTTTNCCTATATGG-------A---GAAAATAAAGTTTAAGATTGCGAGTCTCTAATTGTATGTATATCTCTAATTTTGAGTAGGAAAATGGTCAAACTGCATNAAAG
Reference ( family-857 ) : CCATATGGCATATGCAAAANA-TAAAT--GACC-TCATA----TGGCATAT-G-C--AAAAAATACTTTTNCCTATATGG-------A---GAAAATAAAGTTTAAGATTGCGAGTCTCTAATTGTATGTATATCTCTAATTTTGAGTAGGAAAATGGTCAAACTGCATNAAAG
gi|23685 : CCATAGGGCATATTCAAAATA-TAAAT--GACC-TCATA----TGGCATAT-G-C--AACAAATGCTTTTTTCTATATGG-------A---GAAAATAAAGTTCAAGATTGCGAGTCTTTAATTGTATGTATATCTCTAATTTTGAGTAGGAAAATGGTCAAACTGCAT
gi|23686 : acCCATATGGCATATGCAAAATA-TCAAT--GACC-TCATAATTATGGCATAT-G-C--AAAAAAAACTTTTTC-TATATGG-------A---AAAAATAAAGTTTAAGATTGTGAGTCTCTAATTGTATGTATATCTCTAATTTTGAGTAGG-AAATGGTCAAACTGTATAAAAG
gi|23687 : acATATGATATATGTAAAATT-TAATT--GACC-TCATA----TGGCACAT-G-C--GAAAAATACTTTATTCTATATGG-------A---GAAAATAAAGTTTAAGATTGCGAGTCTCTAGTTGTGTTTATATCTCTAATTTTGAGTAGGAAAATGGTGAAACTGCATAAAAG
gi|23688 : accgCCATATGGCATATGTAAACTA-TAAAT--TACT-TCATA----TGGCATAT-A-G--AAAACAAAATTT---CTATATGA-------A---GAAAATAAAGTT-AAGATTGCAAGTCTCTAATTGTATTTATATCTCTAATTTTGAGTAGGAAAATGGTCAAACTGCATTAAAG
gi|23689 : acCTATATGGCATATG-AAAATA-AAAATTAGGCC--CATA----TGGCATAT-G-C--AAAAAA
gi|23690 : cCCATATGCCATATGCTAAATA-TAGAT--GAGC-CCATA----TGGCATAT-G-C--AAAAAATACGTTTATCTATATGG-------A---GAAAA-AAAGTTTAAGATTGCGAGTCTCTAATTGTATGTATATCTCAAATTTTGAGCAGGAAAATGGCCAAACTGCATAAAAG
gi|23691 : cCTATATGGCATAAGTAAAAAAGTAAAT--GGGT-CCATA----TGGCATAT-G-C--AAAAAAAAC
gi|23692 : cCTATATGGCATATGCAAAA-A-TATATTGGGCC--CATA----TGGCATAT-G-C--AACAAA
gi|23693 : cCTATATGGCATGGGCAAAAAA-TAAAT--GGGC-CCATT----TGGCATAT-G-C--AAAAA
gi|23694 : cCCATATGGCATATGCAAAATA-TAAAT--GACC-TCATA----TGGCGTAT-G-C--AAAAAATACTTTTTTCTATACGG-------A---GAAAATAAAGTTTAAGATTGTGAGTCTCTAATTGTGTGATTATCTCTAATTTTGAGTAAGCAAATGGTCAAACTGCATTAAAG
gi|23695 : ATATGGCATATGCAAAAAAATAAAT--GGGC-CCATAATTATGGCATAT-G-C--AAAAAAAACT
gi|23696 : ATAGCATATGGAAAAAA-TCAAT--AACC-TCATA----TGGCATATGG-C--AAAAAATA-TTTTGCCTATATGGC------ATATGAAAATAAAAATTAGG
gi|23697 : ATAGCATATGGAAAAAA-TCAAT--AACT-TGATA----TGGCATAT-GCC--AAAAAATA-TTTAGCCTATATGG-------
gi|23698 : ATAGCATTTGCAAAAAA-TCAAT---ACC-TGATA----TGGCATAT-GCC--AAAAAATA-TTTTGCCTATAT
gi|23699 : ATAGCATATGCAAAAAA-TCAAT--AACCGT--TA----TGGCATAT-G-CCAAAAAAATA-TTTCGCCTATATGGCATGGGCA---AAAAATAAA
gi|23700 : TGTGAAAAATA-TAAAT--GACC-TCATA----TGGCATAT-G-C--AAAAAATACTTTTTTCTATATGG-------A---GAAAATAAAGCTTAAG--------------ATTGTATGTATATCTGTAATTTTGATTAGGAAAATGGTCAAACCGCATTAAA
gi|23701 : TA----TGGCGTAT-G-C--AAAATATAAATG-AC--GTATGG-------A---GAAAATAAAGTTTAAGATTGCGAGTCTCTTATTGTATGTATATCTCCAATTTTGAGTAGGAAAATGGTCAAACTGCATTGAAGag
Alignments
lowQualScore : 1111 1111111
lowQualScore : 0 3 5 66 33 0000 2 4 33 7 66 5555555 777 0 1
lowQualScore : . . . .. .. .... . . .. . .. ....... ... . .
lowQualScore : 8 4 0 99 44 0000 4 7 22 9 99 5555555 000 1 0
consensus : CCATATGGCATATGCAAAANA-TAAAT--GACC-TCATA----TGGCATAT-G-C--AAAAAATACTTTTNCCTATATGG-------A---GAAAATAAAGTTTAAGATTGCGAGTCTCTAATTGTATGTATATCTCTAATTTTGAGTAGGAAAATGGTCAAACTGCATNAAAG
Reference ( family-857 ) : CCATATGGCATATGCAAAANA-TAAAT--GACC-TCATA----TGGCATAT-G-C--AAAAAATACTTTTNCCTATATGG-------A---GAAAATAAAGTTTAAGATTGCGAGTCTCTAATTGTATGTATATCTCTAATTTTGAGTAGGAAAATGGTCAAACTGCATNAAAG
gi|23685 : CCATAGGGCATATTCAAAATA-TAAAT--GACC-TCATA----TGGCATAT-G-C--AACAAATGCTTTTTTCTATATGG-------A---GAAAATAAAGTTCAAGATTGCGAGTCTTTAATTGTATGTATATCTCTAATTTTGAGTAGGAAAATGGTCAAACTGCAT
gi|23686 : acCCATATGGCATATGCAAAATA-TCAAT--GACC-TCATAATTATGGCATAT-G-C--AAAAAAAACTTTTTC-TATATGG-------A---AAAAATAAAGTTTAAGATTGTGAGTCTCTAATTGTATGTATATCTCTAATTTTGAGTAGG-AAATGGTCAAACTGTATAAAAG
gi|23687 : acATATGATATATGTAAAATT-TAATT--GACC-TCATA----TGGCACAT-G-C--GAAAAATACTTTATTCTATATGG-------A---GAAAATAAAGTTTAAGATTGCGAGTCTCTAGTTGTGTTTATATCTCTAATTTTGAGTAGGAAAATGGTGAAACTGCATAAAAG
gi|23688 : accgCCATATGGCATATGTAAACTA-TAAAT--TACT-TCATA----TGGCATAT-A-G--AAAACAAAATTT---CTATATGA-------A---GAAAATAAAGTT-AAGATTGCAAGTCTCTAATTGTATTTATATCTCTAATTTTGAGTAGGAAAATGGTCAAACTGCATTAAAG
gi|23689 : acCTATATGGCATATG-AAAATA-AAAATTAGGCC--CATA----TGGCATAT-G-C--AAAAAA
gi|23690 : cCCATATGCCATATGCTAAATA-TAGAT--GAGC-CCATA----TGGCATAT-G-C--AAAAAATACGTTTATCTATATGG-------A---GAAAA-AAAGTTTAAGATTGCGAGTCTCTAATTGTATGTATATCTCAAATTTTGAGCAGGAAAATGGCCAAACTGCATAAAAG
gi|23691 : cCTATATGGCATAAGTAAAAAAGTAAAT--GGGT-CCATA----TGGCATAT-G-C--AAAAAAAAC
gi|23692 : cCTATATGGCATATGCAAAA-A-TATATTGGGCC--CATA----TGGCATAT-G-C--AACAAA
gi|23693 : cCTATATGGCATGGGCAAAAAA-TAAAT--GGGC-CCATT----TGGCATAT-G-C--AAAAA
gi|23694 : cCCATATGGCATATGCAAAATA-TAAAT--GACC-TCATA----TGGCGTAT-G-C--AAAAAATACTTTTTTCTATACGG-------A---GAAAATAAAGTTTAAGATTGTGAGTCTCTAATTGTGTGATTATCTCTAATTTTGAGTAAGCAAATGGTCAAACTGCATTAAAG
gi|23695 : ATATGGCATATGCAAAAAAATAAAT--GGGC-CCATAATTATGGCATAT-G-C--AAAAAAAACT
gi|23696 : ATAGCATATGGAAAAAA-TCAAT--AACC-TCATA----TGGCATATGG-C--AAAAAATA-TTTTGCCTATATGGC------ATATGAAAATAAAAATTAGG
gi|23697 : ATAGCATATGGAAAAAA-TCAAT--AACT-TGATA----TGGCATAT-GCC--AAAAAATA-TTTAGCCTATATGG-------
gi|23698 : ATAGCATTTGCAAAAAA-TCAAT---ACC-TGATA----TGGCATAT-GCC--AAAAAATA-TTTTGCCTATAT
gi|23699 : ATAGCATATGCAAAAAA-TCAAT--AACCGT--TA----TGGCATAT-G-CCAAAAAAATA-TTTCGCCTATATGGCATGGGCA---AAAAATAAA
gi|23700 : TGTGAAAAATA-TAAAT--GACC-TCATA----TGGCATAT-G-C--AAAAAATACTTTTTTCTATATGG-------A---GAAAATAAAGCTTAAG--------------ATTGTATGTATATCTGTAATTTTGATTAGGAAAATGGTCAAACCGCATTAAA
gi|23701 : TA----TGGCGTAT-G-C--AAAATATAAATG-AC--GTATGG-------A---GAAAATAAAGTTTAAGATTGCGAGTCTCTTATTGTATGTATATCTCCAATTTTGAGTAGGAAAATGGTCAAACTGCATTGAAGag
blockSeqs : T G TA GT ATTA G C CA C TT CATGGGC TAT A
blockSeqs : T A TG T ATTA . C . C AT C . T
blockSeqs : T . . T . . . . A TA . . A
blockSeqs : T . . T . . . . C TT . . T
blockSeqs : T . . C . . . . C TG . . T
blockSeqs : A . . C . . . . C AG . . T
blockSeqs : A . . C . . . . C TG . .
blockSeqs : T . . T . . . . C CG . .
blockSeqs : A . . C . . . . A TT . .
blockSeqs : A . . T . . . . . A .
blockSeqs : A . . T . . . . . .
blockSeqs : A . . T . . . . .
blockSeqs : A . . T . . . . .
blockSeqs : T . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : CCATATGGCATATGCAAAANA-TAAAT--GACC-TCATA----TGGCATAT-G-C--AAAAAATACTTTTNCCTATATGG-------A---GAAAATAAAGTTTAAGATTGCGAGTCTCTAATTGTATGTATATCTCTAATTTTGAGTAGGAAAATGGTCAAACTGCATNAAAG
finalCons : CCATATGGCATATGCAAAANA-TAAAT--GACC-TCATA----TGGCATAT-G-C--AAAAAATACTTTTNCCTATATGG-------A---GAAAATAAAGTTTAAGATTGCGAGTCTCTAATTGTATGTATATCTCTAATTTTGAGTAGGAAAATGGTCAAACTGCATNAAAG
Alignments
lowQualScore : 1111 1111111
lowQualScore : 0 3 5 66 33 0000 2 4 33 7 66 5555555 777 0 1
lowQualScore : . . . .. .. .... . . .. . .. ....... ... . .
lowQualScore : 8 4 0 99 44 0000 4 7 22 9 99 5555555 000 1 0
consensus : CCATATGGCATATGCAAAANA-TAAAT--GACC-TCATA----TGGCATAT-G-C--AAAAAATACTTTTNCCTATATGG-------A---GAAAATAAAGTTTAAGATTGCGAGTCTCTAATTGTATGTATATCTCTAATTTTGAGTAGGAAAATGGTCAAACTGCATNAAAG
Reference ( family-857 ) : CCATATGGCATATGCAAAANA-TAAAT--GACC-TCATA----TGGCATAT-G-C--AAAAAATACTTTTNCCTATATGG-------A---GAAAATAAAGTTTAAGATTGCGAGTCTCTAATTGTATGTATATCTCTAATTTTGAGTAGGAAAATGGTCAAACTGCATNAAAG
gi|23685 : CCATAGGGCATATTCAAAATA-TAAAT--GACC-TCATA----TGGCATAT-G-C--AACAAATGCTTTTTTCTATATGG-------A---GAAAATAAAGTTCAAGATTGCGAGTCTTTAATTGTATGTATATCTCTAATTTTGAGTAGGAAAATGGTCAAACTGCAT
gi|23686 : acCCATATGGCATATGCAAAATA-TCAAT--GACC-TCATAATTATGGCATAT-G-C--AAAAAAAACTTTTTC-TATATGG-------A---AAAAATAAAGTTTAAGATTGTGAGTCTCTAATTGTATGTATATCTCTAATTTTGAGTAGG-AAATGGTCAAACTGTATAAAAG
gi|23687 : acATATGATATATGTAAAATT-TAATT--GACC-TCATA----TGGCACAT-G-C--GAAAAATACTTTATTCTATATGG-------A---GAAAATAAAGTTTAAGATTGCGAGTCTCTAGTTGTGTTTATATCTCTAATTTTGAGTAGGAAAATGGTGAAACTGCATAAAAG
gi|23688 : accgCCATATGGCATATGTAAACTA-TAAAT--TACT-TCATA----TGGCATAT-A-G--AAAACAAAATTT---CTATATGA-------A---GAAAATAAAGTT-AAGATTGCAAGTCTCTAATTGTATTTATATCTCTAATTTTGAGTAGGAAAATGGTCAAACTGCATTAAAG
gi|23689 : acCTATATGGCATATG-AAAATA-AAAATTAGGCC--CATA----TGGCATAT-G-C--AAAAAA
gi|23690 : cCCATATGCCATATGCTAAATA-TAGAT--GAGC-CCATA----TGGCATAT-G-C--AAAAAATACGTTTATCTATATGG-------A---GAAAA-AAAGTTTAAGATTGCGAGTCTCTAATTGTATGTATATCTCAAATTTTGAGCAGGAAAATGGCCAAACTGCATAAAAG
gi|23691 : cCTATATGGCATAAGTAAAAAAGTAAAT--GGGT-CCATA----TGGCATAT-G-C--AAAAAAAAC
gi|23692 : cCTATATGGCATATGCAAAA-A-TATATTGGGCC--CATA----TGGCATAT-G-C--AACAAA
gi|23693 : cCTATATGGCATGGGCAAAAAA-TAAAT--GGGC-CCATT----TGGCATAT-G-C--AAAAA
gi|23694 : cCCATATGGCATATGCAAAATA-TAAAT--GACC-TCATA----TGGCGTAT-G-C--AAAAAATACTTTTTTCTATACGG-------A---GAAAATAAAGTTTAAGATTGTGAGTCTCTAATTGTGTGATTATCTCTAATTTTGAGTAAGCAAATGGTCAAACTGCATTAAAG
gi|23695 : ATATGGCATATGCAAAAAAATAAAT--GGGC-CCATAATTATGGCATAT-G-C--AAAAAAAACT
gi|23696 : ATAGCATATGGAAAAAA-TCAAT--AACC-TCATA----TGGCATATGG-C--AAAAAATA-TTTTGCCTATATGGC------ATATGAAAATAAAAATTAGG
gi|23697 : ATAGCATATGGAAAAAA-TCAAT--AACT-TGATA----TGGCATAT-GCC--AAAAAATA-TTTAGCCTATATGG-------
gi|23698 : ATAGCATTTGCAAAAAA-TCAAT---ACC-TGATA----TGGCATAT-GCC--AAAAAATA-TTTTGCCTATAT
gi|23699 : ATAGCATATGCAAAAAA-TCAAT--AACCGT--TA----TGGCATAT-G-CCAAAAAAATA-TTTCGCCTATATGGCATGGGCA---AAAAATAAA
gi|23700 : TGTGAAAAATA-TAAAT--GACC-TCATA----TGGCATAT-G-C--AAAAAATACTTTTTTCTATATGG-------A---GAAAATAAAGCTTAAG--------------ATTGTATGTATATCTGTAATTTTGATTAGGAAAATGGTCAAACCGCATTAAA
gi|23701 : TA----TGGCGTAT-G-C--AAAATATAAATG-AC--GTATGG-------A---GAAAATAAAGTTTAAGATTGCGAGTCTCTTATTGTATGTATATCTCCAATTTTGAGTAGGAAAATGGTCAAACTGCATTGAAGag