lowQualScore : 111 1 111111 333333333 11 11 11 1 22222222 111111 1 3333333333333333 2222 11111 222 1 1 11 22
lowQualScore : 2 666 1 9 1 666666 555555555 11 3 44 44 66 66 1 0 1 3 333 7777 88888888 4 44 3 999 00 0 2 0 3 000000 3 999999 6 3 0 0 55 1 1 1 3333333333333333 0 0000 22222 44 0 333 3 3 55 0 888 7777 3 555 1 2 3 7 0 3 2 77 4 333 00 1 55 3 3 2 888888 6 2 1 0 77 3 7 2 00
lowQualScore : . ... . . . ...... ......... .. . .. .. .. .. . . . . ... .... ........ . .. . ... .. . . . . ...... . ...... . . . . .. . . . ................ . .... ..... .. . ... . . .. . ... .... . ... . . . . . . . .. . ... .. . .. . . . ...... . . . . .. . . . ..
lowQualScore : 2 555 4 0 3 444444 444444444 22 1 22 55 99 99 2 8 8 3 555 1111 66666666 0 33 0 222 55 2 5 2 8 888888 3 888888 7 3 1 6 88 7 0 0 5555555555555555 1 5555 22222 66 4 333 8 1 22 7 111 1111 3 333 4 1 6 8 9 6 6 88 8 999 88 5 88 0 5 8 888888 6 2 5 2 33 0 8 1 99
consensus : AAAAAGAAAAA--CAATAACAAAAAACAGATTACATATA------AATATGTTATTTTACAGGT-------ATAAGTTTAAGTATGATACTCCAGTCT-T--CCTCAAATTTATCAAA--TAGTCCGTTCTTAACAGAT-A-TACATC----TGTTTACG-----TCANACATNGNTTTCATA---CTCATCAGGAGTCCTTTATAN-----GAAG-GNG----TGTCATTC-AGGCATCTACTTGCGTAAATATATCG-TTTTATCTCAAGAATT--GA-CAAG-------TTCTCTGCTAATGTTC-TTTTGNCATTT--TTTGA---ANTCCCAAANAG-AAGTTG-GGTTTC----ATTCCATCGT--ACTTGAATATNT-AT-TTGTTT-A-GATGCATCGTTACATTTGANAAAAATG-CTCGTGTATGANNGCANTGCCAAAANATATGTTGCA------GTGTTTCTGTGTGTNTCTTACAAAAAGTACA--TTTTTCATTNGATTTGATNTTNATCAAAGNTGAGGT
Reference ( gi|117179 ) : AAAGAGAAAAA--CAATAACAAAAAACAGATTATATATA------AATATGTTATTTTACAGG--------ATAAGTTTAAGTATGATACTCCAGTCT-T--CCGCAAATTTGTCAGA--TAGTCCGTTCTTAACAGAT-A-TACATC----TATTTATG-----GCAAACATGGATTTCATA---CTCATCAGGAGTCCTTTATAG-----GAAG-GAG----TGGCATCC-AAGCATCTACTTGTATAAATGTATCG-TTTTATCTCAAGAATT--GA-CAAG-------TTCTCTGTTAATGTTC-TTTTATCATTT--TTTGA---AATCCCAAATAG-AAGCTG-AGTTTC----ATTCCATCGT--ACTTGAATATTT-ATATTATTT-A-GATGCATCATTACATTTGATAAAAGTT-CTTGTGTATGAGAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATCTTTATCAAA-TTGAGGT
gi|117178 : AAAAAGAAAAA--CAATAACAAAAA-CATATTATATATA------AATATGTTATTTTACAAG--------ATAAGTTTAAGTATGATACTCCAGTCT-T--CCTCAGATTTGTCAAA--TAGTCCGTTCTTAACAGAT-A-TACATC----TATTTACG-----TCAAACATGGATTTCATA---CTCATCAGGAGTTCTTTATAT-----GAAG-GAG----TAGCATCC-AAGCATTTACTTGCATAAATGTATCG-TTTTATCTCAAGAATT--AA-CAAG-------TTCTTTGTTAATGTTT-TTTTAGCATTT--TTTGA---AATCCCAAATAG-AAGCTG-AGTTTC----ATTCCATTGT--ACTTGAATATTT-ATATTATTT-A-GATGCATCATTACATTTGATAAAAGTT-CTTGTGTATGAGAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATTTTTATCAAA-GTGAGGT
gi|117177 : AAAAAGAAAAA--CAATAACAAAAA-CATATTATATATA------AATATGTTATTTTACAAG--------ATAAGTTTAAGTATGATACTCCAGTCT-T--CCTCAGATTTGTCAAA--TAGTCCGTTCTTAACAGAT-A-TACATC----TATTTACG-----TCAAACATGGATTTCATA---CTCATCAGGAGTTCTTTATAT-----GAAG-GAG----TAGCATCC-AAGCATTTACTTGCATAAATGTATCG-TTTTATCTCAAGAATT--AA-CAAG-------TTCTTTGTTAATGTTT-TTTTAGCATTT--TTTGA---AATCCCAAATAG-AAGCTG-AGTTTC----ATTCCATTGT--ACTTGAATATTT-ATATTATTT-A-GATGCATCATTACATTTGATAAAAGTT-CTTGTGTATGAGAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATTTTTATCAAA-GTGAGGT
gi|117180 : AAAAAGAAAA---CAATAACAAAAA-CAGATTACATGTACATAGAAATATGATATTTTACAG---------ACATGTTTAAGTATGATACTCCAGTCT-A--CCTCAAACTTGTCAGA--TAGTCTGTTCTTA-CAGAT-A-TACATC----TATTTACG-----TCAAACATGGATTTCATA---CTCGTCACAAGTCCTTTATAG-----GAAG-GAG----TGGCATTC-AAGCATCTACTTCCATAAATGTATCG-TTTTATCTCAAGAATT--AT-CAAG-------TTCTCTGTTAATGTTC-TTTTATCAGTT--TTTGA---AATCCCAAATAG-AAGCTG-GGTTTC----ATTCCATTGT--ACTTGAATATTT-ATATTATTT-A-GATGCATCATTACATTTGATAAAAGTT-CTTGTGTATGACAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATCTTTATCAAA-GTGAGGT
gi|117183 : AAAGAGAAAA---CAATAAC-AAAAACAGATTATATAGA------AATATGTAATTTTACAAGT-------ATAAGTTTAAGTATGATACTCCAGTCT-T--CCTCAAATTTGCCAAA--TAGTCCATTCTTAACAGAT-A-TACATC----TATTTACG-----TCAAACATGGATTTCATA---CTCATCAGGAATCCTTTATAG-----GAAG-GAG----TGGCATCCAAAGCATCTACTTGCATAAATGTATCG-TTTTATTTCAAGAATT--AA-C--------------------ACGTTC-TTTT-TCATTT--TTTGA---AATCCCAAATAG-AAGCTG-AGTTTC----ATTCCATTGT--ACTTGAATATTT-ATATTATTT-A-GA------------------AAA----------GTATGAAAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTATCTCTTACAAAAAGTACA--TTTTTCATTTGGTTTAATCTTTATCAAA-ATGAGGT
gi|117181 : AAATAAAAGAA--TCATAAACAAAAACAGATTACAAAGA------AACATGTTATCTTACAAAT-------ATAAGTTGAAGTATGGTACTCCAGTCC-T--CCACGGATTCATCAGA--CAGTCCTTTCTTAACTGAT-A-TAAATC----TGTTTACT-----TCAAACATGGATTTCATA---CTCCTTAGGATTTTTTTATAG-----GAAG-GGG----TGTCATCC-AGTCATCTACTTGCATAGATATATTG-TTTTATCTCAAGA--T--AATCAAG-------TTCTTTGTTAATGTTT-TTTTGTAAGTT--ATT-A---AACCTAAAACAG-ATGTTG-GATTTA----ATTCCATAGG--ACTTGAATATTTGAT-TTATTT-A-GATGCATTGTTACATTTGATAAA--TTGCTTGTGTATGAGAGCAATGCCAAAATATATGTTGCA------ATGTTTCTGTGTGCTTCTTACAAAAGGTACA--TTTTTCGTTTGATTTAATCTTTATCAAA-GTGCGGT
gi|117182 : aAAAGAGAAAAAAACAATAACAAAAA-CAGACTATATATA------AATACGTTATTTTACAGG--------ATAAGTTTAAGTATGATACTCCAGTAT-T--CCTCAAATTTGTCAGA--TAGTCCGTTCTTAACAGAT-A-TACATC----TATTTACG-----TCAAACATGGATTTCATA---CTCATCAGGAGTCCTTCATAG-----GAAG-GAG----TGTCATTC-AAGTATCTACTTGCATAAATGTATCG-TTTTATCTCAAGAATT--AA-CAAG-------TTCTCTGTTAATGTTC-TTATATTATT
gi|117184 : AAAAACAAACAACAGATAACATGGA------AACAT-TTATT-----GAT-------ATAAGTTGAAGTATGATACTTCAGTCC-T--CCTCGAA-TTATCAGA--CAGCCTGTTCTTAA
gi|117185 : TTTTACAGATAGTTTTTATAAGGTCGAGTATGACAATC-ATTTTAT--CATTGAATGTATCAGA--CAGTCCATTCTTAATAGAT-A-TACATA----TGTTTATT-----ACATACATTTCTTTCATG---CTAATCAGGAAGCCTGTATAG-----AAAT-GTG----TGTCATCC-AAACATCTACTTGCATTGATATATCGTTTTTATATCAAAGATT--TT-CAAGT------TTTTCTATTAATGTTG-TTTTGTCATTT--GT----------CAAAATAG-TCGTTGCAG-TTA----ATTCCATTGT--AAGTGAATGTAT-ACTTTGATT-A-AATGCAATGTTACATTTGATAAAATTG-CTTGTGTATGAGAACAATGCCAAAGGATATGTTTCA------ATG--------CGTTTCTTAC-AAAAGTACATTTTTTTCATTTGATTCCATGTTGATCTAA-GTG
gi|117186 : GTTT--GTATAGTACCCCAATCT-T--CACTAAATTTATCAAACCTA--CCATTCTCAATGTTT-A-TCCACT----TGTTTACC-----TCATACAATGCTCTCATA---TTTCCTATTAGCCCATGAAAT-----GAAA-TTT----TGTTATTC-AGACATCTGCTTGAGTAAATATATCT-CTTAATGGCAAGTAGTAGGA-TA---------TTTTCTGCTAATG--CATTTTGGC--TG--TTTGATTTATTTCCAAAAATTAATTTG-A-TTTC----ATTAAAGCAA--AATTGGACATGT-CT-TTGCTC-AAGATATTTACTTATATCTGAAAACAATG-CTCTTATATGATTACATTGCCAAAACAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--TTTTTCATCAGATTTGATATTGATTAAAGTTAAG
gi|117187 : GTTT--GTATAATACCCCAATCT-T--CACTAAATTTATCAAACCTA--CCTTTCTTAAT-GTT-AATCCACT----TGTTTACC-----TCATACAATGCTCTCATA---TTTCCTATGAGCCCATGAAAT-----GAAA-TTT----TGTTATTC-AGACATCTGCTTGAGTAAATATATCT-CTTAATTGCAAGAAGTAGGA-TA---------TTTTCTGCCAATG--CATTTTGGC--TG--TTTGATTTATTTCCAAAAAT-TAATTG-GAATTC----ATTAAAGCAA--AATTGGACATGT-CT-TTGCTCGA-GATATTTACTTATATCTGAAAACAATG-CTCTTATATGATTACATTGCCAAAACAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--CTTTTCATCAGATTTGAAATTGATTAAAGTTAAGt
gi|117188 : GTTT--GTATAATACCCCAGTCT-T--CACTAAATTTATCAAACCTA--CCATTCTTAAT-GTTAA-TCCACT----TGTTTACC-----TCATACAATGCTCTCATAT--TTCAT-ATAAGCCCATGAAAT-----GAAA-GTT----TGTTATTC-AGACATCTGCTTGAGTAAATATATC-------TCTTAATAATA--GA-GAAGTAGGATATTTTCTGCTAATGCAT-TTTGGTTGTTTGATTT-----ATTTCCAAAAAA-TAATTG-GATTTCATTAATTCAAAAGTAAAATTGGACATGT-CT-TTGCTCAA-GATATTTACTTATATCTGAAAACAATG-CTTTTATATATTTTCATTGCCAAAACA---ATTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACAT-TTTTTCATTAGATTTGATATTGATTAAAGTTAAGt
gi|117189 : GTTT--GTATAGTACCCCAATCT-T--CACTAAATTTATCAAA--CCGACCATTCTTAAT-GTT-A----ATC----CACTTTTGTTACCTCATACAATGCTCTCATA---TT---------TCCTTTA-AGCCCATGAAATGAAATTTTGTTATTC-AGACATCTGCTAGAGTAAATATATCT-CTTAATGGCAAGAAGTAGGA-TA---------TTTTCTGCTTACG--CATTTTGGC--TG--TTTGATTTATTTCCAAAAAA-TAATTG-GATTTC----ATTAAAGCAA--AATTGGACATGT-CT-TTGCTCGA-AATATTTACTTATATCTGAAAACAATG-CTCTTATATGATTACATTGCCAAAACAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--TTTTTCATCAGATTTGATATTGATTAAAGTTAAGt
gi|117191 : GTTT--GTATAATACCCCAATCT-TAACTA-AAATTTATCAAACCTA--CCATTCTTAAT-GTT-A----ATCAACTTGTTTACC-----TCATACAATGCTCTCATATTTCCTATC---AGCCCATGAAAT-----GAAA-TTT----TGTTATTC-AGACATCTGCTTGAGTAAATATATAC-TTTAATGGTAGGAAGTAGGA-TA---------TTTTCTGCTAATG--CATTTTGGC--TG--TTTGATTTATTTCCAAAAAA-TAATTG-GATTTC----ATTt
gi|117192 : TTT--TTTGC---AACCCCAAATAG-AAGTTGGATTTTT----ATTCCATTGT--TCTTGAATATTT-ATCATATTT-A-GATGCATCGTTACATTTGATAAATGTG-CTTGTGTATGAGAGCAATATCAAAAGATGTTTTGCA------CGGTTCCTGCGTGTTTCTTACAAAATGTATA--TCTTTTATTTGATTTAATGTTT
gi|117193 : ttcttaatCATTATATTTGAAATAAATA-CTCGCATATGAGTACGTTGCCAAAACATATTTTACAGTCACTGTGTTTCTGTTAGTTTATTGCAAATAATA-----TTTTCATCAGATTTGATATTTATTAAA-
gi|117190 : TTATATCTGAAAACAATG-CTCTTATATGATTTCATTGCCAAATCAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--TTTTTCATCAGATTTGATATTGATTAAAGTTAAGgt
Alignments
lowQualScore : 1 111111 111111111 11 11 111 11 11111111111 3333 11 333 1 1111111 1
lowQualScore : 5 5 77 5 444444 999999999 22 2 2 88 88 2 222 0 2 5 6666 3 1 33 1 555 66 0 5555 2 2 2 1 11 2 0 33 1 1 1 99 2 00000000000 0 0000 2 22 1 000 2 1 55 2 888888 0 44 1 666 5 3 9 6 2 99 2 1 0 11 22 1 1 1 0000000 0 1 0 66 1 1 1 5
lowQualScore : . . .. . ...... ......... .. . . .. .. . ... . . . .... . . .. . ... .. . .... . . . . .. . . .. . . . .. . ........... . .... . .. . ... . . .. . ...... . .. . ... . . . . . .. . . . .. .. . . . ....... . . . .. . . . .
lowQualScore : 7 7 99 5 444444 999999999 22 7 7 33 44 7 999 3 9 7 1111 6 0 11 0 000 88 8 9999 1 5 1 0 77 9 1 66 9 2 3 66 9 55555555555 4 9999 0 44 3 000 0 0 00 9 111111 7 22 0 444 4 1 2 2 8 44 0 8 1 66 00 0 0 9 4444444 7 0 7 88 0 0 0 2
consensus : AAAA-AGA-AAAA--CAATAACAAAAAACAGATTATATATA------AATATGTTATTTTACAGGTA-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAAATTTATCAAA--TAGTCCG-TTCTTAACA--GAT-A-TACATC----TGTTTACGTCANACANNGNTCTCATA---CT--CATCAGG--AGCCCNTNANATGAAGGNGTGTCATCC-AGGCATCTACTTGCGTAAATGTATCG-TTTTATCTCAAGAATT--GA-CAAG-T-------TCTCTGCTAATGTTCATTTTGGCATTTTTTGATTTANTCCCAAANAG-NAGTTGGGTTTC-ATTCCATC----GTAC--TTGAATATNT-A-TAT-TGTTT-A-GATGCATCGTTACATTTGANAAAAGTGCTCGTGTATGAGNGCANTGCCAAAANATATGTTGCA------GTGTTTCTGTGTGTTTCTTACAAAAAGTACA--TTTTTCATTNGATTTGATNTTNATCAAAGTTGAGGT
Reference ( family-856 ) : AAAA-AGA-AAAA--CAATAACAAAAAACAGATTACATATA------AATATGTTATTTTACAGGTA-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAAATTTATCAAA--TAGTCCG-TTCTTAACA--GAT-A-TACATC----TGTTTACGTCANACATNGNTTTCATA---CT--CATCAGG--AGTCCTTTATANGAAGGNGTGTCATTC-AGGCATCTACTTGCGTAAATATATCG-TTTTATCTCAAGAATT--GA-CAAG-T-------TCTCTGCTAATGTTC-TTTTGNCATTTTTTGA---ANTCCCAAANAG-AAGTTGGGTTTC-ATTCCATC----GTAC--TTGAATATNT-A-T-T-TGTTT-A-GATGCATCGTTACATTTGANAAAAATGCTCGTGTATGANNGCANTGCCAAAANATATGTTGCA------GTGTTTCTGTGTGTNTCTTACAAAAAGTACA--TTTTTCATTNGATTTGATNTTNATCAAAGNTGAGGT
gi|117177 : AAAA-AGA-AAAA--CAATAACAAAAA-CATATTATATATA------AATATGTTATTTTACAAG-A-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAGATTTGTCAAA--TAGTCCG-TTCTTAACA--GAT-A-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CATCAGG--AGTTCTTTATATGAAGGAGTAGCATCC-AAGCATTTACTTGCATAAATGTATCG-TTTTATCTCAAGAATT--AA-CAAG-T-------TCTTTGTTAATGTTT-TTTTAGCATTTTTTGA---AATCCCAAATAG-AAGCTGAGTTTC-ATTCCATT----GTAC--TTGAATATTT-A-TAT-TATTT-A-GATGCATCATTACATTTGATAAAAGTTCTTGTGTATGAGAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATTTTTATCAAAG-TGAGGT
gi|117178 : AAAA-AGA-AAAA--CAATAACAAAAA-CATATTATATATA------AATATGTTATTTTACAAG-A-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAGATTTGTCAAA--TAGTCCG-TTCTTAACA--GAT-A-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CATCAGG--AGTTCTTTATATGAAGGAGTAGCATCC-AAGCATTTACTTGCATAAATGTATCG-TTTTATCTCAAGAATT--AA-CAAG-T-------TCTTTGTTAATGTTT-TTTTAGCATTTTTTGA---AATCCCAAATAG-AAGCTGAGTTTC-ATTCCATT----GTAC--TTGAATATTT-A-TAT-TATTT-A-GATGCATCATTACATTTGATAAAAGTTCTTGTGTATGAGAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATTTTTATCAAAG-TGAGGT
gi|117179 : AAAG-AGA-AAAA--CAATAACAAAAAACAGATTATATATA------AATATGTTATTTTACAGG-A-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CGCAAATTTGTCAGA--TAGTCCG-TTCTTAACA--GAT-A-TACATC----TATTTATGGCAAACATGGATTTCATA---CT--CATCAGG--AGTCCTTTATAGGAAGGAGTGGCATCC-AAGCATCTACTTGTATAAATGTATCG-TTTTATCTCAAGAATT--GA-CAAG-T-------TCTCTGTTAATGTTC-TTTTATCATTTTTTGA---AATCCCAAATAG-AAGCTGAGTTTC-ATTCCATC----GTAC--TTGAATATTT-A-TAT-TATTT-A-GATGCATCATTACATTTGATAAAAGTTCTTGTGTATGAGAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATCTTTATCAAA-TTGAGGT
gi|117180 : AAAA-AGA-AAA---CAATAACAAAAA-CAGATTACATGTACATAGAAATATGATATTTTACAGACA-------T--GTTTAAGTATGATACTCCAGTCT-AC-CTCAAACTTGTCAGA--TAGTCTG-TTCTTA-CA--GAT-A-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CGTCACA--AGTCCTTTATAGGAAGGAGTGGCATTC-AAGCATCTACTTCCATAAATGTATCG-TTTTATCTCAAGAATT--AT-CAAG-T-------TCTCTGTTAATGTTC-TTTTATCAGTTTTTGA---AATCCCAAATAG-AAGCTGGGTTTC-ATTCCATT----GTAC--TTGAATATTT-A-TAT-TATTT-A-GATGCATCATTACATTTGATAAAAGTTCTTGTGTATGACAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATCTTTATCAAAG-TGAGGT
gi|117181 : AAAATAAA-AGAA--TCATAAACAAAAACAGATTACAAAGA------AACATGTTATCTTACAAATA-------TAAGTTGAAGTATGGTACTCCAGTCC-TC-CACGGATTCATCAGA--CAGTCCT-TTCTTAACT--GAT-A-TAAATC----TGTTTACTTCAAACATGGATTTCATA---CT--CCTTAGG--ATTTTTTTATAGGAAGGGGTGTCATCC-AGTCATCTACTTGCATAGATATATTG-TTTTATCTCAAGA--T--AATCAAG-T-------TCTTTGTTAATGTTT-TTTTGTAAGTTATT-A---AACCTAAAACAG-ATGTTGGATTTA-ATTCCATA----GGAC--TTGAATATTTGA-T-T-TATTT-A-GATGCATTGTTACATTTGAT-AAATTGCTTGTGTATGAGAGCAATGCCAAAATATATGTTGCA------ATGTTTCTGTGTGCTTCTTACAAAAGGTACA--TTTTTCGTTTGATTTAATCTTTATCAAAG-TGCGGT
gi|117182 : AAAG-AGA-AAAAAACAATAACAAAAA-CAGACTATATATA------AATACGTTATTTTACAGG-A-------TAAGTTTAAGTATGATACTCCAGTAT-TC-CTCAAATTTGTCAGA--TAGTCCG-TTCTTAACA--GAT-A-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CATCAGG--AGTCCTTCATAGGAAGGAGTGTCATTC-AAGTATCTACTTGCATAAATGTATCG-TTTTATCTCAAGAATT--AA-CAAG-T-------TCTCTGTTAATGTTC-TTATATTATT
gi|117183 : AA-AGAGAAAA--CAATAACAAAA-ACAGATTATATAGA------AATATGTAATTTTACAAGTA-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAAATTTGCCAAA--TAGTCCA-TTCTTAACA--GAT-A-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CATCAGG--AATCCTTTATAGGAAGGAGTGGCATCCAAAGCATCTACTTGCATAAATGTATCG-TTTTATTTCAAGAATT--AA-CACG-T-------TCT-------------TTTT--CATTTTTTGA---AATCCCAAATAG-AAGCTGAGTTTC-ATTCCATT----GTAC--TTGAATATTT-A-TAT-TATTT-A-GA------------------AAA---------GTATGAAAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTATCTCTTACAAAAAGTACA--TTTTTCATTTGGTTTAATCTTTATCAAA-ATGAGGT
gi|117184 : AAAAACAAACAACAGATAACATGGA------AACAT-TTATT-----GATA-------TAAGTTGAAGTATGATACTTCAGTCC-TC-CTCGAA-TTATCAGA--CAGCCTG-TTCTTAA
gi|117185 : TTTTACAGATAGTTTTTATAAGGTCGAGTATGACAATC-ATTTTATC-ATTGAATGTATCAGA--CAGTCCA-TTCTTAATA--GAT-A-TACATA----TGTTTATTACATACATTTCTTTCATG---CT--AATCAGG--AAGCCTGTATAGAAATGTGTGTCATCC-AAACATCTACTTGCATTGATATATCGTTTTTATATCAAAGATT--TT-CAAGTT-------TTTCTATTAATGTTG-TTTTGTCATTTGT----------CAAAATAG-TCGTTGCAGTTA-ATTCCATT----GTAA--GTGAATGTAT-ACT-T-TGATT-A-AATGCAATGTTACATTTGATAAAATTGCTTGTGTATGAGAACAATGCCAAAGGATATGTTTCA--------------ATGCGTTTCTTAC-AAAAGTACATTTTTTTCATTTGATTCCATGTTGATCTAAG
gi|117186 : GTTT--GTATAGTACCCCAATCT-TC-ACTAAATTTATCAAACCTA--CCA-TTCTCAATG--TTT-A-TCCACT----TGTTTACCTCATACAATGCTCTCATA---TT--TCCTATT--AGCCCATGAAATGAAATTTTGTTATTC-AGACATCTGCTTGAGTAAATATATCT-CTTAATGGCAAGTAGTAGGA-TA---T-------TTTCTGCTAATG--CATTTTGGC--TGTTTGATTTATTTCCAAAAAT-TAATTTGATTTC-ATTAAAGC----AAAA--TTGGACATGT-C-T-T-TGCTC-AAGATATTTACTTATATCTGAAAACAATGCTCTTATATGATTACATTGCCAAAACAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--TTTTTCATCAGATTTGATATTGATTAAAGTTAAGtg
gi|117187 : GTTT--GTATAATACCCCAATCT-TC-ACTAAATTTATCAAACCTA--CCT-TTCTTAAT---GTTAA-TCCACT----TGTTTACCTCATACAATGCTCTCATA---TT--TCCTATG--AGCCCATGAAATGAAATTTTGTTATTC-AGACATCTGCTTGAGTAAATATATCT-CTTAATTGCAAGAAGTAGGA-TA---T-------TTTCTGCCAATG--CATTTTGGC--TGTTTGATTTATTTCCAAAAAT-TAATTGGAATTC-ATTAAAGC----AAAA--TTGGACATGT-C-T-T-TGCTCGA-GATATTTACTTATATCTGAAAACAATGCTCTTATATGATTACATTGCCAAAACAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--CTTTTCATCAGATTTGAAATTGATTAAAGTTAAGt
gi|117188 : GTTT--GTATAATACCCCAGTCT-TC-ACTAAATTTATCAAACCTA--CCA-TTCTTAAT---GTT-AATCCACT----TGTTTACCTCATACAATGCTCTCATA---TTT-CAT-ATA--AGCCCATGAAATGAAAGTTTGTTATTC-AGACATCTGCTTGAGTAAATATATC-------TCTTAATAATA--GA-GAAG-TAGGATATTTTCTGCTAATG--CATTTTGG--TTGTTTGATTTATTTCCAAAAAA-TAATTGGATTTC-ATTAATTCAAAAGTAAAATTGGACATGT-C-T-T-TGCTC-AAGATATTTACTTATATCTGAAAACAATGCTTTTATATATTTTCATTGCCAAAACA---ATTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACAT-TTTTTCATTAGATTTGATATTGATTAAAGTTAAGt
gi|117189 : GTTT--GTATAGTACCCCAATCT-TC-ACTAAATTTATCAAA--CCGACCA-TTCTTAATGTTAAT-C-CACTTT----TGTT-ACCTCATACAATGCTCTCATA---TTTCCTTTA----AGCCCATGAAATGAAATTTTGTTATTC-AGACATCTGCTAGAGTAAATATATCT-CTTAATGGCAAGAAGTAGGA-TA---T-------TTTCTGCTTACG--CATTTTGGC--TGTTTGATTTATTTCCAAAAAA-TAATTGGATTTC-ATTAAAGC----AAAA--TTGGACATGT-C-T-T-TGCTCGA-AATATTTACTTATATCTGAAAACAATGCTCTTATATGATTACATTGCCAAAACAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--TTTTTCATCAGATTTGATATTGATTAAAGTTAAGt
gi|117190 : GTTT--GTATAGTACCCTTATCT-TC-ACTAAATTTATCAAACCTA---CGATTGTTAAT---GTT-AATCCACT----TGTTTACATCATACAATCCTCTCATA---TT----TCCTGTTAGCCCATAAAATGAAATTTTGTAATTC-AGACATCTTCT--CGTAA-----TGG---------CAAGAAGTAGGA-TA-G-T-------T-TCTGCTAATG--CATTTTGGC--TGTTTGATTTATTTCCAAAAATTAAAT--GGATTC-ATTAAA--------AC--T-GGACATGT-C-T-T-TGTTGGA-GATATTTACTTATATCTGAAAACAATGCTCTTATATGATTTCATTGCCAAATCAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--TTTTTCATCAGATTTGATATTGATTAAAGTTAAGt
gi|117191 : GTTT--GTATAATACCCCAATCT-TAACTAAAATTTATCAAACCTA--CCA-TTCTTAAT---GTT-A----ATCAACTTGTTTACCTCATACAATGCTCTCATATTTCC--TATC-----AGCCCATGAAATGAAATTTTGTTATTC-AGACATCTGCTTGAGTAAATATATAC-TTTAATGGTAGGAAGTAGGA-TA---T-------TTTCTGCTAATG--CATTTTGGC--TGTTTGATTTATTTCCAAAAAA-TAATTGGATTTC-ATTt
gi|117192 : TTTTTTGC---AACCCCAAATAG-AAGTTGGATTTTTATTCCATT----GTTC--TTGAATATTT-A-T-CATATTT-A-GATGCATCGTTACATTTGATAAATGTGCTTGTGTATGAGAGCAATATCAAAAGATGTTTTGCA------CGGTTCCTGCGTGTTTCTTACAAAATGTATA--TCTTTTATTTGATTTAATGTT
gi|117193 : ttcttaatCATTATATTTGAAATAAATACTCGCATATGAGTACGTTGCCAAAACATATTTTACAGTCACTGTGTTTCTGTTAGTTTATTGCAAATAATA-----TTTTCATCAGATTTGATATTTATTAAAGt
Alignments
lowQualScore : 1 111111 111111111 11 11 111 11 1 2222 11 111 1 1111111
lowQualScore : 5 5 77 5 444444 999999999 22 2 2 88 88 2 222 0 8 6666 3 1 22 1 555 66 0 5555 1 1 1 1 11 2 0 0 44 1 1 99 2 0 9999999 0 2 8888 44 1 999 2 1 1 0 2 888888 0 44 1 33 7 9 6 2 99 2 2 0 11 22 1 1 1 0000000 0 1 0 66 1 1 1 6
lowQualScore : . . .. . ...... ......... .. . . .. .. . ... . . .... . . .. . ... .. . .... . . . . .. . . . .. . . .. . . ....... . . .... .. . ... . . . . . ...... . .. . .. . . . . .. . . . .. .. . . . ....... . . . .. . . . .
lowQualScore : 7 7 99 5 444444 999999999 22 7 7 33 44 7 999 3 6 1111 6 0 00 0 000 88 8 9999 0 0 0 3 77 9 1 7 77 2 3 66 9 2 3333333 4 9 3333 77 3 111 0 0 0 3 9 111111 7 22 0 33 5 2 2 8 44 0 2 1 66 99 0 0 9 4444444 7 4 7 88 0 0 0 1
consensus : AAAA-AGA-AAAA--CAATAACAAAAAACAGATTATATATA------AATATGTTATTTTACAGGTA-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAAATTTATCAAA--TAGTCCG-TTCTTAACA--GATA-TACATC----TGTTTACGTCANACANNGNTCTCATA---CT--CATCAGG--AGCCCNTNANATGAAGGNGTGTCATCC-AGGCATCTACTTGCGTAAATGTATCGTTTT-ATCTCAAGAATT--GA-CAAGT-------TCT-CTGCTAATGTTCATTTTGGCATTTTTTGATTTANTCCCAAANAGNAGTTGGATTTC-ATTCCATC----GTAC--TTGAATATNT-ATATTGTTT-A-GATGCATCGTTACATTTGANAAAAGTGCTCGTGTATGAGNGCANTGCCAAAANATATGTTGCA------GTGTTTCTGTGTGTTTCTTACAAAAAGTACA--TTTTTCATTNGATTTGATNTTNATCAAAGTTGAGGT
Reference ( family-856 ) : AAAA-AGA-AAAA--CAATAACAAAAAACAGATTATATATA------AATATGTTATTTTACAGGTA-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAAATTTATCAAA--TAGTCCG-TTCTTAACA--GATA-TACATC----TGTTTACGTCANACANNGNTCTCATA---CT--CATCAGG--AGCCCNTNANATGAAGGNGTGTCATCC-AGGCATCTACTTGCGTAAATGTATCGTTTT-ATCTCAAGAATT--GA-CAAGT-------TCT-CTGCTAATGTTCATTTTGGCATTTTTTGATTTANTCCCAAANAGNAGTTGGGTTTC-ATTCCATC----GTAC--TTGAATATNT-ATATTGTTT-A-GATGCATCGTTACATTTGANAAAAGTGCTCGTGTATGAGNGCANTGCCAAAANATATGTTGCA------GTGTTTCTGTGTGTTTCTTACAAAAAGTACA--TTTTTCATTNGATTTGATNTTNATCAAAGTTGAGGT
gi|117177 : AAAA-AGA-AAAA--CAATAACAAAAA-CATATTATATATA------AATATGTTATTTTACAAG-A-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAGATTTGTCAAA--TAGTCCG-TTCTTAACA--GATA-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CATCAGG--AGTTCTTTATATGAAGGAGTAGCATCC-AAGCATTTACTTGCATAAATGTATCGTTTT-ATCTCAAGAATT--AA-CAAGT-------TCT-TTGTTAATGTTT-TTTTAGCATTTTTTGA---AATCCCAAATAGAAGCTGAGTTTC-ATTCCATT----GTAC--TTGAATATTT-ATATTATTT-A-GATGCATCATTACATTTGATAAAAGTTCTTGTGTATGAGAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATTTTTATCAAAG-TGAGGT
gi|117178 : AAAA-AGA-AAAA--CAATAACAAAAA-CATATTATATATA------AATATGTTATTTTACAAG-A-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAGATTTGTCAAA--TAGTCCG-TTCTTAACA--GATA-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CATCAGG--AGTTCTTTATATGAAGGAGTAGCATCC-AAGCATTTACTTGCATAAATGTATCGTTTT-ATCTCAAGAATT--AA-CAAGT-------TCT-TTGTTAATGTTT-TTTTAGCATTTTTTGA---AATCCCAAATAGAAGCTGAGTTTC-ATTCCATT----GTAC--TTGAATATTT-ATATTATTT-A-GATGCATCATTACATTTGATAAAAGTTCTTGTGTATGAGAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATTTTTATCAAAG-TGAGGT
gi|117179 : AAAG-AGA-AAAA--CAATAACAAAAAACAGATTATATATA------AATATGTTATTTTACAGG-A-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CGCAAATTTGTCAGA--TAGTCCG-TTCTTAACA--GATA-TACATC----TATTTATGGCAAACATGGATTTCATA---CT--CATCAGG--AGTCCTTTATAGGAAGGAGTGGCATCC-AAGCATCTACTTGTATAAATGTATCGTTTT-ATCTCAAGAATT--GA-CAAGT-------TCT-CTGTTAATGTTC-TTTTATCATTTTTTGA---AATCCCAAATAGAAGCTGAGTTTC-ATTCCATC----GTAC--TTGAATATTT-ATATTATTT-A-GATGCATCATTACATTTGATAAAAGTTCTTGTGTATGAGAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATCTTTATCAAA-TTGAGGT
gi|117180 : AAAA-AGA-AAA---CAATAACAAAAA-CAGATTACATGTACATAGAAATATGATATTTTACAGACA-------T--GTTTAAGTATGATACTCCAGTCT-AC-CTCAAACTTGTCAGA--TAGTCTG-TTCTTA-CA--GATA-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CGTCACA--AGTCCTTTATAGGAAGGAGTGGCATTC-AAGCATCTACTTCCATAAATGTATCGTTTT-ATCTCAAGAATT--AT-CAAGT-------TCT-CTGTTAATGTTC-TTTTATCAGTTTTTGA---AATCCCAAATAGAAGCTGGGTTTC-ATTCCATT----GTAC--TTGAATATTT-ATATTATTT-A-GATGCATCATTACATTTGATAAAAGTTCTTGTGTATGACAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATCTTTATCAAAG-TGAGGT
gi|117181 : AAAATAAA-AGAA--TCATAAACAAAAACAGATTACAAAGA------AACATGTTATCTTACAAATA-------TAAGTTGAAGTATGGTACTCCAGTCC-TC-CACGGATTCATCAGA--CAGTCCT-TTCTTAACT--GATA-TAAATC----TGTTTACTTCAAACATGGATTTCATA---CT--CCTTAGG--ATTTTTTTATAGGAAGGGGTGTCATCC-AGTCATCTACTTGCATAGATATATTGTTTT-ATCTCAAGA--T--AATCAAGT-------TCT-TTGTTAATGTTT-TTTTGTAAGTT----ATTAAACCTAAAACAGATGTTGGATTTA-ATTCCATA----GGAC--TTGAATATTTGAT-TTATTT-A-GATGCATTGTTACATTTGAT-AAATTGCTTGTGTATGAGAGCAATGCCAAAATATATGTTGCA------ATGTTTCTGTGTGCTTCTTACAAAAGGTACA--TTTTTCGTTTGATTTAATCTTTATCAAAGT
gi|117182 : AAAG-AGA-AAAAAACAATAACAAAAA-CAGACTATATATA------AATACGTTATTTTACAGG-A-------TAAGTTTAAGTATGATACTCCAGTAT-TC-CTCAAATTTGTCAGA--TAGTCCG-TTCTTAACA--GATA-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CATCAGG--AGTCCTTCATAGGAAGGAGTGTCATTC-AAGTATCTACTTGCATAAATGTATCGTTTT-ATCTCAAGAATT--AA-CAAGT-------TCT-CTGTTAATGTTCgcggt
gi|117183 : AA-AGAGAAAA--CAATAACAAAA-ACAGATTATATAGA------AATATGTAATTTTACAAGTA-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAAATTTGCCAAA--TAGTCCA-TTCTTAACA--GATA-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CATCAGG--AATCCTTTATAGGAAGGAGTGGCATCCAAAGCATCTACTTGCATAAATGTATCGTTTT-ATTTCAAGAATT--AA-CACGT-------TCT--------------TTTT--CATTTTTTGA---AATCCCAAATAGAAGCTGAGTTTC-ATTCCATT----GTAC--TTGAATATTT-ATATTATTT-A-GA------------------AAA---------GTATGAAAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTATCTCTTACAAAAAGTACA--TTTTTCATTTGGTTTAATCTTTATCAAAA-TGAGGTttatattatt
gi|117184 : AAAAACAAACAACAGATAACATGGA------AACAT-TTATT-----GATA-------TAAGTTGAAGTATGATACTTCAGTCC-TC-CTCGAA-TTATCAGA--CAGCCTG-TTCTTAA
gi|117185 : TTTTACAGATAGTTTTTATAAGGTCGAGTATGACAATC-ATTTTATC-ATTGAATGTATCAGA--CAGTCCA-TTCTTAATA--GATA-TACATA----TGTTTATTACATACATTTCTTTCATG---CT--AATCAGG--AAGCCTGTATAGAAATGTGTGTCATCC-AAACATCTACTTGCATTGATATATCGTTTTTATATCAAAGATT--TT-CAAGT-------TTTTCTATTAATGTT-GTTTTGTCATTTGT----------CAAAATAGTCGTTGCAGTTA-ATTCCATT----GTAA--GTGAATGTAT-ACTTTGATT-A-AATGCAATGTTACATTTGATAAAATTGCTTGTGTATGAGAACAATGCCAAAGGATATGTTTCA--------------ATGCGTTTCTTAC-AAAAGTACATTTTTTTCATTTGATTCCATGTTGATCTAAGT
gi|117186 : GTTT--GTATAGTACCCCAATCT-TC-ACTAAATTTATCAAACCTA--CCA-TTCTCAATG--TTTA-TCCACT----TGTTTACCTCATACAATGCTCTCATA---TT--TCCTATT--AGCCCATGAAATGAAATTTTGTTATTC-AGACATCTGCTTGAGTAAATATATCTCTTA-ATGGCAAGTAGTAGGA-TA--T-------TTT-CTGCTAATG--CATTTTGGC--TGTTTGATTTATTTCCAAAAATTAATTTGATTTC-ATTAAAGC----AAAA--TTGGACATGT-CT-TTGCTC-AAGATATTTACTTATATCTGAAAACAATGCTCTTATATGATTACATTGCCAAAACAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--TTTTTCATCAGATTTGATATTGATTAAAGTTAAGg
gi|117187 : GTTT--GTATAATACCCCAATCT-TC-ACTAAATTTATCAAACCTA--CCT-TTCTTAAT---GTTAATCCACT----TGTTTACCTCATACAATGCTCTCATA---TT--TCCTATG--AGCCCATGAAATGAAATTTTGTTATTC-AGACATCTGCTTGAGTAAATATATCTCTTA-ATTGCAAGAAGTAGGA-TA--T-------TTT-CTGCCAATG--CATTTTGGC--TGTTTGATTTATTTCCAAAAATTAATTGGAATTC-ATTAAAGC----AAAA--TTGGACATGT-CT-TTGCTCGA-GATATTTACTTATATCTGAAAACAATGCTCTTATATGATTACATTGCCAAAACAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--CTTTTCATCAGATTTGAAATTGATTAAAGTTAAGt
gi|117188 : GTTT--GTATAATACCCCAGTCT-TC-ACTAAATTTATCAAACCTA--CCA-TTCTTAAT---GTTAATCCACT----TGTTTACCTCATACAATGCTCTCATA---TTT-CAT-ATA--AGCCCATGAAATGAAAGTTTGTTATTC-AGACATCTGCTTGAGTAAATATATC-------TCTTAATAATA--GA-GAAGTAGGATATTTT-CTGCTAATG--CATTTTGG--TTGTTTGATTTATTTCCAAAAAATAATTGGATTTC-ATTAATTCAAAAGTAAAATTGGACATGT-CT-TTGCTC-AAGATATTTACTTATATCTGAAAACAATGCTTTTATATATTTTCATTGCCAAAACA---ATTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACAT-TTTTTCATTAGATTTGATATTGATTAAAGTTAAGt
gi|117189 : GTTT--GTATAGTACCCCAATCT-TC-ACTAAATTTATCAAA--CCGACCA-TTCTTAATGTTAATC-CACTTT----TGTT-ACCTCATACAATGCTCTCATA---TTTCCTTTA----AGCCCATGAAATGAAATTTTGTTATTC-AGACATCTGCTAGAGTAAATATATCTCTTA-ATGGCAAGAAGTAGGA-TA--T-------TTT-CTGCTTACG--CATTTTGGC--TGTTTGATTTATTTCCAAAAAATAATTGGATTTC-ATTAAAGC----AAAA--TTGGACATGT-CT-TTGCTCGA-AATATTTACTTATATCTGAAAACAATGCTCTTATATGATTACATTGCCAAAACAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--TTTTTCATCAGATTTGATATTGATTAAAGTTAAGt
gi|117190 : GTTT--GTATAGTACCCTTATCT-TC-ACTAAATTTATCAAACCTA---CGATTGTTAAT---GTTAATCCACT----TGTTTACATCATACAATCCTCTCATA---TT----TCCTGTTAGCCCATAAAATGAAATTTTGTAATTC-AGACATCTTCT--CGTAA-TG----G---------CAAGAAGTAGGA-TA-GT-------T-T-CTGCTAATG--CATTTTGGC--TGTTTGATTTATTTCCAAAAATTAAATGGATT-C-ATTAAA--------AC--T-GGACATGT-CT-TTGTTGGA-GATATTTACTTATATCTGAAAACAATGCTCTTATATGATTTCATTGCCAAATCAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--TTTTTCATCAGATTTGATATTGATTAAAGTTAAGt
gi|117191 : GTTT--GTATAATACCCCAATCT-TAACTAAAATTTATCAAACCTA--CCA-TTCTTAAT---GTTA----ATCAACTTGTTTACCTCATACAATGCTCTCATATTTCC--TATC-----AGCCCATGAAATGAAATTTTGTTATTC-AGACATCTGCTTGAGTAAATATATACTTTA-ATGGTAGGAAGTAGGA-TA--T-------TTT-CTGCTAATG--CATTTTGGC--TGTTTGATTTATTTCCAAAAAATAATTGGATTTC-ATTt
gi|117192 : TTTTTTG---CAACCCCAAATAGAAGTTGGATTTTTATTCCATT----GTTC--TTGAATATTT-ATCATATTT-A-GATGCATCGTTACATTTGATAAATGTGCTTGTGTATGAGAGCAATATCAAAAGATGTTTTGCA------CGGTTCCTGCGTGTTTCTTACAAAATGTATA--TCTTTTATTTGATTTAATGTT
gi|117193 : ttcttaatCATTATATTTGAAATAAATACTCGCATATGAGTACGTTGCCAAAACATATTTTACAGTCACTGTGTTTCTGTTAGTTTATTGCAAATAATA-----TTTTCATCAGATTTGATATTTATTAAAGTt
Alignments
lowQualScore : 1 111111 111111111 11 11 111 11 1 2222 11 111 1 1111111
lowQualScore : 5 5 77 5 444444 999999999 22 2 2 88 88 2 222 0 8 6666 3 1 22 1 555 66 0 5555 1 1 1 1 11 2 0 0 44 1 1 99 2 0 9999999 0 2 8888 44 1 999 2 1 1 2 888888 0 44 1 33 7 9 6 2 99 2 2 0 11 22 1 1 1 0000000 0 1 0 66 1 1 1 6
lowQualScore : . . .. . ...... ......... .. . . .. .. . ... . . .... . . .. . ... .. . .... . . . . .. . . . .. . . .. . . ....... . . .... .. . ... . . . . ...... . .. . .. . . . . .. . . . .. .. . . . ....... . . . .. . . . .
lowQualScore : 7 7 99 5 444444 999999999 22 7 7 33 44 7 999 3 6 1111 6 0 00 0 000 88 8 9999 0 0 0 3 77 9 1 7 77 2 3 66 9 2 3333333 4 9 3333 77 3 111 0 0 0 9 111111 7 22 0 33 5 2 2 8 44 0 2 1 66 99 0 0 9 4444444 7 4 7 88 0 0 0 1
consensus : AAAA-AGA-AAAA--CAATAACAAAAAACAGATTATATATA------AATATGTTATTTTACAGGTA-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAAATTTATCAAA--TAGTCCG-TTCTTAACA--GATA-TACATC----TGTTTACGTCANACANNGNTCTCATA---CT--CATCAGG--AGCCCNTNANATGAAGGNGTGTCATCC-AGGCATCTACTTGCGTAAATGTATCGTTTT-ATCTCAAGAATT--GA-CAAGT-------TCT-CTGCTAATGTTCATTTTGGCATTTTTTGATTTANTCCCAAANAGNAGTTGGATTTC-ATTCCATC----GTAC--TTGAATATNT-ATATTGTTT-A-GATGCATCGTTACATTTGANAAAAGTGCTCGTGTATGAGNGCANTGCCAAAANATATGTTGCA------GTGTTTCTGTGTGTTTCTTACAAAAAGTACA--TTTTTCATTNGATTTGATNTTNATCAAAGTTGAGGT
Reference ( family-856 ) : AAAA-AGA-AAAA--CAATAACAAAAAACAGATTATATATA------AATATGTTATTTTACAGGTA-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAAATTTATCAAA--TAGTCCG-TTCTTAACA--GATA-TACATC----TGTTTACGTCANACANNGNTCTCATA---CT--CATCAGG--AGCCCNTNANATGAAGGNGTGTCATCC-AGGCATCTACTTGCGTAAATGTATCGTTTT-ATCTCAAGAATT--GA-CAAGT-------TCT-CTGCTAATGTTCATTTTGGCATTTTTTGATTTANTCCCAAANAGNAGTTGGATTTC-ATTCCATC----GTAC--TTGAATATNT-ATATTGTTT-A-GATGCATCGTTACATTTGANAAAAGTGCTCGTGTATGAGNGCANTGCCAAAANATATGTTGCA------GTGTTTCTGTGTGTTTCTTACAAAAAGTACA--TTTTTCATTNGATTTGATNTTNATCAAAGTTGAGGT
gi|117177 : AAAA-AGA-AAAA--CAATAACAAAAA-CATATTATATATA------AATATGTTATTTTACAAG-A-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAGATTTGTCAAA--TAGTCCG-TTCTTAACA--GATA-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CATCAGG--AGTTCTTTATATGAAGGAGTAGCATCC-AAGCATTTACTTGCATAAATGTATCGTTTT-ATCTCAAGAATT--AA-CAAGT-------TCT-TTGTTAATGTTT-TTTTAGCATTTTTTGA---AATCCCAAATAGAAGCTGAGTTTC-ATTCCATT----GTAC--TTGAATATTT-ATATTATTT-A-GATGCATCATTACATTTGATAAAAGTTCTTGTGTATGAGAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATTTTTATCAAAG-TGAGGT
gi|117178 : AAAA-AGA-AAAA--CAATAACAAAAA-CATATTATATATA------AATATGTTATTTTACAAG-A-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAGATTTGTCAAA--TAGTCCG-TTCTTAACA--GATA-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CATCAGG--AGTTCTTTATATGAAGGAGTAGCATCC-AAGCATTTACTTGCATAAATGTATCGTTTT-ATCTCAAGAATT--AA-CAAGT-------TCT-TTGTTAATGTTT-TTTTAGCATTTTTTGA---AATCCCAAATAGAAGCTGAGTTTC-ATTCCATT----GTAC--TTGAATATTT-ATATTATTT-A-GATGCATCATTACATTTGATAAAAGTTCTTGTGTATGAGAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATTTTTATCAAAG-TGAGGT
gi|117179 : AAAG-AGA-AAAA--CAATAACAAAAAACAGATTATATATA------AATATGTTATTTTACAGG-A-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CGCAAATTTGTCAGA--TAGTCCG-TTCTTAACA--GATA-TACATC----TATTTATGGCAAACATGGATTTCATA---CT--CATCAGG--AGTCCTTTATAGGAAGGAGTGGCATCC-AAGCATCTACTTGTATAAATGTATCGTTTT-ATCTCAAGAATT--GA-CAAGT-------TCT-CTGTTAATGTTC-TTTTATCATTTTTTGA---AATCCCAAATAGAAGCTGAGTTTC-ATTCCATC----GTAC--TTGAATATTT-ATATTATTT-A-GATGCATCATTACATTTGATAAAAGTTCTTGTGTATGAGAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATCTTTATCAAA-TTGAGGT
gi|117180 : AAAA-AGA-AAA---CAATAACAAAAA-CAGATTACATGTACATAGAAATATGATATTTTACAGACA-------T--GTTTAAGTATGATACTCCAGTCT-AC-CTCAAACTTGTCAGA--TAGTCTG-TTCTTA-CA--GATA-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CGTCACA--AGTCCTTTATAGGAAGGAGTGGCATTC-AAGCATCTACTTCCATAAATGTATCGTTTT-ATCTCAAGAATT--AT-CAAGT-------TCT-CTGTTAATGTTC-TTTTATCAGTTTTTGA---AATCCCAAATAGAAGCTGGGTTTC-ATTCCATT----GTAC--TTGAATATTT-ATATTATTT-A-GATGCATCATTACATTTGATAAAAGTTCTTGTGTATGACAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATCTTTATCAAAG-TGAGGT
gi|117181 : AAAATAAA-AGAA--TCATAAACAAAAACAGATTACAAAGA------AACATGTTATCTTACAAATA-------TAAGTTGAAGTATGGTACTCCAGTCC-TC-CACGGATTCATCAGA--CAGTCCT-TTCTTAACT--GATA-TAAATC----TGTTTACTTCAAACATGGATTTCATA---CT--CCTTAGG--ATTTTTTTATAGGAAGGGGTGTCATCC-AGTCATCTACTTGCATAGATATATTGTTTT-ATCTCAAGA--T--AATCAAGT-------TCT-TTGTTAATGTTT-TTTTGTAAGTT----ATTAAACCTAAAACAGATGTTGGATTTA-ATTCCATA----GGAC--TTGAATATTTGAT-TTATTT-A-GATGCATTGTTACATTTGAT-AAATTGCTTGTGTATGAGAGCAATGCCAAAATATATGTTGCA------ATGTTTCTGTGTGCTTCTTACAAAAGGTACA--TTTTTCGTTTGATTTAATCTTTATCAAAGT
gi|117182 : AAAG-AGA-AAAAAACAATAACAAAAA-CAGACTATATATA------AATACGTTATTTTACAGG-A-------TAAGTTTAAGTATGATACTCCAGTAT-TC-CTCAAATTTGTCAGA--TAGTCCG-TTCTTAACA--GATA-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CATCAGG--AGTCCTTCATAGGAAGGAGTGTCATTC-AAGTATCTACTTGCATAAATGTATCGTTTT-ATCTCAAGAATT--AA-CAAGT-------TCT-CTGTTAATGTTCgcggt
gi|117183 : AA-AGAGAAAA--CAATAACAAAA-ACAGATTATATAGA------AATATGTAATTTTACAAGTA-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAAATTTGCCAAA--TAGTCCA-TTCTTAACA--GATA-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CATCAGG--AATCCTTTATAGGAAGGAGTGGCATCCAAAGCATCTACTTGCATAAATGTATCGTTTT-ATTTCAAGAATT--AA-CACGT-------TCT--------------TTTT--CATTTTTTGA---AATCCCAAATAGAAGCTGAGTTTC-ATTCCATT----GTAC--TTGAATATTT-ATATTATTT-A-GA------------------AAA---------GTATGAAAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTATCTCTTACAAAAAGTACA--TTTTTCATTTGGTTTAATCTTTATCAAAA-TGAGGTttatattatt
gi|117184 : AAAAACAAACAACAGATAACATGGA------AACAT-TTATT-----GATA-------TAAGTTGAAGTATGATACTTCAGTCC-TC-CTCGAA-TTATCAGA--CAGCCTG-TTCTTAA
gi|117185 : TTTTACAGATAGTTTTTATAAGGTCGAGTATGACAATC-ATTTTATC-ATTGAATGTATCAGA--CAGTCCA-TTCTTAATA--GATA-TACATA----TGTTTATTACATACATTTCTTTCATG---CT--AATCAGG--AAGCCTGTATAGAAATGTGTGTCATCC-AAACATCTACTTGCATTGATATATCGTTTTTATATCAAAGATT--TT-CAAGT-------TTTTCTATTAATGTT-GTTTTGTCATTTGT----------CAAAATAGTCGTTGCAGTTA-ATTCCATT----GTAA--GTGAATGTAT-ACTTTGATT-A-AATGCAATGTTACATTTGATAAAATTGCTTGTGTATGAGAACAATGCCAAAGGATATGTTTCA--------------ATGCGTTTCTTAC-AAAAGTACATTTTTTTCATTTGATTCCATGTTGATCTAAGT
gi|117186 : GTTT--GTATAGTACCCCAATCT-TC-ACTAAATTTATCAAACCTA--CCA-TTCTCAATG--TTTA-TCCACT----TGTTTACCTCATACAATGCTCTCATA---TT--TCCTATT--AGCCCATGAAATGAAATTTTGTTATTC-AGACATCTGCTTGAGTAAATATATCTCTTA-ATGGCAAGTAGTAGGA-TA--T-------TTT-CTGCTAATG--CATTTTGGC--TGTTTGATTTATTTCCAAAAATTAATTTGATTTC-ATTAAAGC----AAAA--TTGGACATGT-CT-TTGCTC-AAGATATTTACTTATATCTGAAAACAATGCTCTTATATGATTACATTGCCAAAACAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--TTTTTCATCAGATTTGATATTGATTAAAGTTAAGg
gi|117187 : GTTT--GTATAATACCCCAATCT-TC-ACTAAATTTATCAAACCTA--CCT-TTCTTAAT---GTTAATCCACT----TGTTTACCTCATACAATGCTCTCATA---TT--TCCTATG--AGCCCATGAAATGAAATTTTGTTATTC-AGACATCTGCTTGAGTAAATATATCTCTTA-ATTGCAAGAAGTAGGA-TA--T-------TTT-CTGCCAATG--CATTTTGGC--TGTTTGATTTATTTCCAAAAATTAATTGGAATTC-ATTAAAGC----AAAA--TTGGACATGT-CT-TTGCTCGA-GATATTTACTTATATCTGAAAACAATGCTCTTATATGATTACATTGCCAAAACAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--CTTTTCATCAGATTTGAAATTGATTAAAGTTAAGt
gi|117188 : GTTT--GTATAATACCCCAGTCT-TC-ACTAAATTTATCAAACCTA--CCA-TTCTTAAT---GTTAATCCACT----TGTTTACCTCATACAATGCTCTCATA---TTT-CAT-ATA--AGCCCATGAAATGAAAGTTTGTTATTC-AGACATCTGCTTGAGTAAATATATC-------TCTTAATAATA--GA-GAAGTAGGATATTTT-CTGCTAATG--CATTTTGG--TTGTTTGATTTATTTCCAAAAAATAATTGGATTTC-ATTAATTCAAAAGTAAAATTGGACATGT-CT-TTGCTC-AAGATATTTACTTATATCTGAAAACAATGCTTTTATATATTTTCATTGCCAAAACA---ATTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACAT-TTTTTCATTAGATTTGATATTGATTAAAGTTAAGt
gi|117189 : GTTT--GTATAGTACCCCAATCT-TC-ACTAAATTTATCAAA--CCGACCA-TTCTTAATGTTAATC-CACTTT----TGTT-ACCTCATACAATGCTCTCATA---TTTCCTTTA----AGCCCATGAAATGAAATTTTGTTATTC-AGACATCTGCTAGAGTAAATATATCTCTTA-ATGGCAAGAAGTAGGA-TA--T-------TTT-CTGCTTACG--CATTTTGGC--TGTTTGATTTATTTCCAAAAAATAATTGGATTTC-ATTAAAGC----AAAA--TTGGACATGT-CT-TTGCTCGA-AATATTTACTTATATCTGAAAACAATGCTCTTATATGATTACATTGCCAAAACAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--TTTTTCATCAGATTTGATATTGATTAAAGTTAAGt
gi|117190 : GTTT--GTATAGTACCCTTATCT-TC-ACTAAATTTATCAAACCTA---CGATTGTTAAT---GTTAATCCACT----TGTTTACATCATACAATCCTCTCATA---TT----TCCTGTTAGCCCATAAAATGAAATTTTGTAATTC-AGACATCTTCT--CGTAA-TG----G---------CAAGAAGTAGGA-TA-GT-------T-T-CTGCTAATG--CATTTTGGC--TGTTTGATTTATTTCCAAAAATTAAATGGATT-C-ATTAAA--------AC--T-GGACATGT-CT-TTGTTGGA-GATATTTACTTATATCTGAAAACAATGCTCTTATATGATTTCATTGCCAAATCAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--TTTTTCATCAGATTTGATATTGATTAAAGTTAAGt
gi|117191 : GTTT--GTATAATACCCCAATCT-TAACTAAAATTTATCAAACCTA--CCA-TTCTTAAT---GTTA----ATCAACTTGTTTACCTCATACAATGCTCTCATATTTCC--TATC-----AGCCCATGAAATGAAATTTTGTTATTC-AGACATCTGCTTGAGTAAATATATACTTTA-ATGGTAGGAAGTAGGA-TA--T-------TTT-CTGCTAATG--CATTTTGGC--TGTTTGATTTATTTCCAAAAAATAATTGGATTTC-ATTt
gi|117192 : TTTTTTG---CAACCCCAAATAGAAGTTGGATTTTTATTCCATT----GTTC--TTGAATATTT-ATCATATTT-A-GATGCATCGTTACATTTGATAAATGTGCTTGTGTATGAGAGCAATATCAAAAGATGTTTTGCA------CGGTTCCTGCGTGTTTCTTACAAAATGTATA--TCTTTTATTTGATTTAATGTT
gi|117193 : ttcttaatCATTATATTTGAAATAAATACTCGCATATGAGTACGTTGCCAAAACATATTTTACAGTCACTGTGTTTCTGTTAGTTTATTGCAAATAATA-----TTTTCATCAGATTTGATATTTATTAAAGTt
blockSeqs : T G AA A CATAGA TAGTTTTTA AA A A CC GT A GTT A AACT G A TG A TTT TC TGTT T T T T AG A TT C T AG T A AGGATAT T TTT AT T TTA A T A T TCAAAA AA T GA A G A A CA T G TG GA A G T GTCACTG T TT T T T T
blockSeqs : . . . A . CA AA . . CC GT . A A . G A TG A . T GG T T T G AG . T C T AG . A . . TTC AT T TTT A T A . TT . T A A G A A CA T G TG GA A G T A T T T C T T
blockSeqs : . . . A . TA AA . . CC GT . A A . G A TG A . . GG T T T G AG . T C T AG . A . . TTC AG T TTT A T A . TC . T A A G . A CA T G TG CA A G T A T . T C T T
blockSeqs : . . . A . TA AA . . CC GT . A . . T A TG A . . CA T T T G GG . T C T AG . A . . TTT AG T TTT A C A . TT . T A A . . A TG T T TG GA A T T A T . T C T T
blockSeqs : . . . . . TA AA . . CC GT . T . . G A TG A . . GG T C T G AG . T C T AG . A . . TTG AT T TTT A T A . TA . T A T . . A TG T T TG AA A G T A C . T C T T
blockSeqs : . . . . . A AA . . . GT . A . . G A TG A . . GG T T T G AG . T T T . . C . . CA AT T TTT T T T . TT . A A C . . T AC A A CT GA A G T A T . T G G T
blockSeqs : . . A AA . . . GC . A . . T T TT C . . GG T T T G TG . T A G . . A . . CA T G TTT T A T . TT . G C . . . T AC A A CT TT T C A G A . A A G T
blockSeqs : A GA . . . GT . A . . C T AT C . . GG A G A T TT . A G G . . A . . CA . G C T A T . GC . G C . . . T AC A A TT TT T C A G A . A A G T
blockSeqs : . . . . GA . G . . C T AT C . . TT A G A T TT . A T T . . . . . CA . G . T A T . GC . G C . . . T AC A A CT TT T C A G A . A A G T
blockSeqs : . . . . . . . . . C T AT C . . TG A G A T TT . A C G . . . . . CA . G . T A T . GC . G C . . . T AC A A CT TT T C A G A . A A G .
blockSeqs : . . . . . . . . . C T AT C . . TA A G A T TT . A G G . . . . . CA . G . T A T . TT . G C . . . A CG T G TG TT T C T G A . A A G .
blockSeqs : . . . . . . . . . A T AT C . . . A A A T TT . . G G . . . . . . . G . A A T . . . T A . . . . CA A A CG GA A G T C T . T G T .
blockSeqs : . . . . . . . . . C T AT C . . . A G A T TT . . . . . . . . . T . . T A . . . . . GT T C . . T . A A
blockSeqs : . . . . . .
blockSeqCons : TA******* CG** TTT
originalCons : AAAA-AGA-AAAA--CAATAACAAAAAACAGATTATATATA------AATATGTTATTTTACAGGTA-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAAATTTATCAAA--TAGTCCG-TTCTTAACA--GATA-TACATC----TGTTTACGTCANACANNGNTCTCATA---CT--CATCAGG--AGCCCNTNANATGAAGGNGTGTCATCC-AGGCATCTACTTGCGTAAATGTATCGTTTT-ATCTCAAGAATT--GA-CAAGT-------TCT-CTGCTAATGTTCATTTTGGCATTTTTTGATTTANTCCCAAANAGNAGTTGGATTTC-ATTCCATC----GTAC--TTGAATATNT-ATATTGTTT-A-GATGCATCGTTACATTTGANAAAAGTGCTCGTGTATGAGNGCANTGCCAAAANATATGTTGCA------GTGTTTCTGTGTGTTTCTTACAAAAAGTACA--TTTTTCATTNGATTTGATNTTNATCAAAGTTGAGGT
finalCons : AAAA-AGA-AAAA--CAATAACAAAAAACAGATTATATATA------AATATGTTATTTTACAGGTA-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAAATTTATCAAA--TAGTCCG-TTCTTAACA--GATA-TACATC----TGTTTACGTCANACANNGNTCTCATA---CT--CATCAGG--AGCCCNTNANATGAAGGNGTGTCATCC-AGGCATCTACTTGCGTAAATGTATCGTTTT-ATCTCAAGAATT--GA-CAAGT-------TCT-CTGCTAATGCG--TTTTGGCATTTTTTGATTTANTCCCAAANAGNAGTTGGATTTC-ATTCCATC----GTAC--TTGAATATNT-ATATTGTTT-A-GATGCATCGTTACATTTGANAAAAGTGCTCGTGTATGAGNGCANTGCCAAAANATATGTTGCA------GTGTTTCTGTGTGTTTCTTACAAAAAGTACA--TTTTTCATTNGATTTGATNTTNATCAAAGTTGAGGT
Alignments
lowQualScore : 111111 111111111 11 11 111 11 1 22222 11 111 1 1111111
lowQualScore : 5 5 77 0 9 444444 999999999 22 2 2 88 88 2 222 0 2 5 6666 3 1 22 1 555 66 0 5555 1 1 1 1 11 2 0 0 44 1 1 99 2 0 9999999 0 2 66666 0 44 1 999 2 1 1 2 888888 0 44 1 33 7 9 6 2 99 2 2 0 11 22 1 1 1 0000000 0 1 0 66 1 1 1 6
lowQualScore : . . .. . . ...... ......... .. . . .. .. . ... . . . .... . . .. . ... .. . .... . . . . .. . . . .. . . .. . . ....... . . ..... . .. . ... . . . . ...... . .. . .. . . . . .. . . . .. .. . . . ....... . . . .. . . . .
lowQualScore : 7 7 99 1 4 444444 999999999 22 7 7 33 44 7 999 3 9 7 1111 6 0 00 0 000 88 8 9999 0 0 0 3 77 9 1 7 77 2 3 66 9 2 3333333 4 9 33333 7 88 3 111 0 0 0 9 111111 7 22 0 33 5 2 2 8 44 0 2 1 66 99 0 0 9 4444444 7 4 7 88 0 0 0 1
consensus : AAAA-AGA-AAAA--CAATAACAAAAAACAGATTATATAT------AAATATGTTATTTTACAGGTA-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAAATTTATCAAA--TAGTCCG-TTCTTAACA--GAT-A-TACATC----TGTTTACGTCANACANNGNTCTCATA---CT--CATCAGG--AGCCCNTNANATGAAGGNGTGTCATCC-AGGCATCTACTTGCGTAAATGTATCGTTTT-ATCTCAAGAATT--GA-CAAGT-------TCT-CTGCTAATG--C-GTTTTGGCATTTTTTGATTTANTCCCAAANAGNAGTTGGATTTC-ATTCCATC----GTAC--TTGAATATNT-ATATTGTTT-A-GATGCATCGTTACATTTGANAAAAGTGCTCGTGTATGAGNGCANTGCCAAAANATATGTTGCA------GTGTTTCTGTGTGTTTCTTACAAAAAGTACA--TTTTTCATTNGATTTGATNTTNATCAAAGTTGAGGT
Reference ( family-856 ) : AAAA-AGA-AAAA--CAATAACAAAAAACAGATTATATAT------AAATATGTTATTTTACAGGTA-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAAATTTATCAAA--TAGTCCG-TTCTTAACA--GAT-A-TACATC----TGTTTACGTCANACANNGNTCTCATA---CT--CATCAGG--AGCCCNTNANATGAAGGNGTGTCATCC-AGGCATCTACTTGCGTAAATGTATCGTTTT-ATCTCAAGAATT--GA-CAAGT-------TCT-CTGCTAATG--C-GTTTTGGCATTTTTTGATTTANTCCCAAANAGNAGTTGGATTTC-ATTCCATC----GTAC--TTGAATATNT-ATATTGTTT-A-GATGCATCGTTACATTTGANAAAAGTGCTCGTGTATGAGNGCANTGCCAAAANATATGTTGCA------GTGTTTCTGTGTGTTTCTTACAAAAAGTACA--TTTTTCATTNGATTTGATNTTNATCAAAGTTGAGGT
gi|117177 : AAAA-AGA-AAAA--CAATAACAAAAA-CATATTATATAT------AAATATGTTATTTTACAAG-A-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAGATTTGTCAAA--TAGTCCG-TTCTTAACA--GAT-A-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CATCAGG--AGTTCTTTATATGAAGGAGTAGCATCC-AAGCATTTACTTGCATAAATGTATCGTTTT-ATCTCAAGAATT--AA-CAAGT-------TCT-TTGTTAATGT-T-TTTTTAGCATTTTTTGA---AATCCCAAATAGAAGCTGAGTTTC-ATTCCATT----GTAC--TTGAATATTT-ATATTATTT-A-GATGCATCATTACATTTGATAAAAGTTCTTGTGTATGAGAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATTTTTATCAAAG-TGAGGT
gi|117178 : AAAA-AGA-AAAA--CAATAACAAAAA-CATATTATATAT------AAATATGTTATTTTACAAG-A-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAGATTTGTCAAA--TAGTCCG-TTCTTAACA--GAT-A-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CATCAGG--AGTTCTTTATATGAAGGAGTAGCATCC-AAGCATTTACTTGCATAAATGTATCGTTTT-ATCTCAAGAATT--AA-CAAGT-------TCT-TTGTTAATGT-T-TTTTTAGCATTTTTTGA---AATCCCAAATAGAAGCTGAGTTTC-ATTCCATT----GTAC--TTGAATATTT-ATATTATTT-A-GATGCATCATTACATTTGATAAAAGTTCTTGTGTATGAGAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATTTTTATCAAAG-TGAGGT
gi|117179 : AAAG-AGA-AAAA--CAATAACAAAAAACAGATTATATAT------AAATATGTTATTTTACAGG-A-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CGCAAATTTGTCAGA--TAGTCCG-TTCTTAACA--GAT-A-TACATC----TATTTATGGCAAACATGGATTTCATA---CT--CATCAGG--AGTCCTTTATAGGAAGGAGTGGCATCC-AAGCATCTACTTGTATAAATGTATCGTTTT-ATCTCAAGAATT--GA-CAAGT-------TCT-CTGTTAATGTTC--TTTTATCATTTTTTGA---AATCCCAAATAGAAGCTGAGTTTC-ATTCCATC----GTAC--TTGAATATTT-ATATTATTT-A-GATGCATCATTACATTTGATAAAAGTTCTTGTGTATGAGAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATCTTTATCAAA-TTGAGGT
gi|117180 : AAAA-AGA-AAA---CAATAAC-AAAAACAGATTACATGTACATAGAAATATGATATTTTACAGACA-------T--GTTTAAGTATGATACTCCAGTCT-AC-CTCAAACTTGTCAGA--TAGTCTG-TTCTT-ACA--GAT-A-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CGTCACA--AGTCCTTTATAGGAAGGAGTGGCATTC-AAGCATCTACTTCCATAAATGTATCGTTTT-ATCTCAAGAATT--AT-CAAGT-------TCT-CTGTTAATGTTC--TTTTATCAGTTTTTGA---AATCCCAAATAGAAGCTGGGTTTC-ATTCCATT----GTAC--TTGAATATTT-ATATTATTT-A-GATGCATCATTACATTTGATAAAAGTTCTTGTGTATGACAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTGTTTCTTACAAAAAGTACA--TTTTTCATTTGATTTAATCTTTATCAAAG-TGAGGT
gi|117181 : AAAATAAA-AGAA--TCATAAACAAAAACAGATTACAAAG------AAACATGTTATCTTACAAATA-------TAAGTTGAAGTATGGTACTCCAGTCC-TC-CACGGATTCATCAGA--CAGTCCT-TTCTTAACT--GAT-A-TAAATC----TGTTTACTTCAAACATGGATTTCATA---CT--CCTTAGG--ATTTTTTTATAGGAAGGGGTGTCATCC-AGTCATCTACTTGCATAGATATATTGTTTT-ATCTCAAGA--T--AATCAAGT-------TCT-TTGTTAATG--T-TTTTTTGTAAGTT---ATTAAACCTAAAACAGATGTTGGATTTA-ATTCCATA----GGAC--TTGAATATTTGAT-TTATTT-A-GATGCATTGTTACATTTGAT-AAATTGCTTGTGTATGAGAGCAATGCCAAAATATATGTTGCA------ATGTTTCTGTGTGCTTCTTACAAAAGGTACA--TTTTTCGTTTGATTTAATCTTTATCAAAGT
gi|117182 : AAAG-AGA-AAAAAACAATAACAAAAA-CAGACTATATAT------AAATACGTTATTTTACAGG-A-------TAAGTTTAAGTATGATACTCCAGTAT-TC-CTCAAATTTGTCAGA--TAGTCCG-TTCTTAACA--GAT-A-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CATCAGG--AGTCCTTCATAGGAAGGAGTGTCATTC-AAGTATCTACTTGCATAAATGTATCGTTTT-ATCTCAAGAATT--AA-CAAGT-------TCT-CTGTTAATG--gcggt
gi|117183 : AA-AGAGAAAA--CAATAACAAAA-ACAGATTATATAG------AAATATGTAATTTTACAAGTA-------TAAGTTTAAGTATGATACTCCAGTCT-TC-CTCAAATTTGCCAAA--TAGTCCA-TTCTTAACA--GAT-A-TACATC----TATTTACGTCAAACATGGATTTCATA---CT--CATCAGG--AATCCTTTATAGGAAGGAGTGGCATCCAAAGCATCTACTTGCATAAATGTATCGTTTT-ATTTCAAGAATT--AA-CACGT-------TCT---------------TTTT--CATTTTTTGA---AATCCCAAATAGAAGCTGAGTTTC-ATTCCATT----GTAC--TTGAATATTT-ATATTATTT-A-GA------------------AAA---------GTATGAAAGCAATGCCAAAAGATATGTTGCA------ATGTTTCTGTCTATCTCTTACAAAAAGTACA--TTTTTCATTTGGTTTAATCTTTATCAAAA-TGAGGTttcttatattatt
gi|117184 : AAAAACAAACAACAGATAACATGG------AAACAT-TTATT-----GATA-------TAAGTTGAAGTATGATACTTCAGTCC-TC-CTCGAA-TTATCAGA--CAGCCTG-TTCTTAA
gi|117185 : TTTTACAGATAGTTTTTATAAGGTCGAGTATGACAATC-ATTTTATC-ATTGAATGTATCAGA--CAGTCCA-TTCTTAATA--GAT-A-TACATA----TGTTTATTACATACATTTCTTTCATG---CT--AATCAGG--AAGCCTGTATAGAAATGTGTGTCATCC-AAACATCTACTTGCATTGATATATCGTTTTTATATCAAAGATT--TT-CAAGT-------TTTTCTATTAATG--TTGTTTTGTCATTTGT----------CAAAATAGTCGTTGCAGTTA-ATTCCATT----GTAA--GTGAATGTAT-ACTTTGATT-A-AATGCAATGTTACATTTGATAAAATTGCTTGTGTATGAGAACAATGCCAAAGGATATGTTTCA--------------ATGCGTTTCTTAC-AAAAGTACATTTTTTTCATTTGATTCCATGTTGATCTAAGT
gi|117186 : GTTT--GTATAGTACCCCAATCT-TC-ACTAAATTTATCAAACCTA--CCA-TTCTCAATG--TTT-A-TCCACT----TGTTTACCTCATACAATGCTCTCATA---TT--TCCTATT--AGCCCATGAAATGAAATTTTGTTATTC-AGACATCTGCTTGAGTAAATATATCTCTTA-ATGGCAAGTAGTAGGA-TA--T-------TTT-CTGCTAATG--C-ATTTTGGC--TGTTTGATTTATTTCCAAAAATTAATTTGATTTC-ATTAAAGC----AAAA--TTGGACATGT-CT-TTGCTC-AAGATATTTACTTATATCTGAAAACAATGCTCTTATATGATTACATTGCCAAAACAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--TTTTTCATCAGATTTGATATTGATTAAAGTTAAGg
gi|117187 : GTTT--GTATAATACCCCAATCT-TC-ACTAAATTTATCAAACCTA--CCT-TTCTTAAT---GTTAA-TCCACT----TGTTTACCTCATACAATGCTCTCATA---TT--TCCTATG--AGCCCATGAAATGAAATTTTGTTATTC-AGACATCTGCTTGAGTAAATATATCTCTTA-ATTGCAAGAAGTAGGA-TA--T-------TTT-CTGCCAATG--C-ATTTTGGC--TGTTTGATTTATTTCCAAAAATTAATTGGAATTC-ATTAAAGC----AAAA--TTGGACATGT-CT-TTGCTCGA-GATATTTACTTATATCTGAAAACAATGCTCTTATATGATTACATTGCCAAAACAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--CTTTTCATCAGATTTGAAATTGATTAAAGTTAAGt
gi|117188 : GTTT--GTATAATACCCCAGTCT-TC-ACTAAATTTATCAAACCTA--CCA-TTCTTAAT---GTT-AATCCACT----TGTTTACCTCATACAATGCTCTCATA---TTT-CAT-ATA--AGCCCATGAAATGAAAGTTTGTTATTC-AGACATCTGCTTGAGTAAATATATC-------TCTTAATAATA--GA-GAAGTAGGATATTTT-CTGCTAATG--C-ATTTTGG--TTGTTTGATTTATTTCCAAAAAATAATTGGATTTC-ATTAATTCAAAAGTAAAATTGGACATGT-CT-TTGCTC-AAGATATTTACTTATATCTGAAAACAATGCTTTTATATATTTTCATTGCCAAAACA---ATTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACAT-TTTTTCATTAGATTTGATATTGATTAAAGTTAAGt
gi|117189 : GTTT--GTATAGTACCCCAATCT-TC-ACTAAATTTATCAAA--CCGACCA-TTCTTAATGTTAAT-C-CACTTT----TGTT-ACCTCATACAATGCTCTCATA---TTTCCTTTA----AGCCCATGAAATGAAATTTTGTTATTC-AGACATCTGCTAGAGTAAATATATCTCTTA-ATGGCAAGAAGTAGGA-TA--T-------TTT-CTGCTTACG--C-ATTTTGGC--TGTTTGATTTATTTCCAAAAAATAATTGGATTTC-ATTAAAGC----AAAA--TTGGACATGT-CT-TTGCTCGA-AATATTTACTTATATCTGAAAACAATGCTCTTATATGATTACATTGCCAAAACAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--TTTTTCATCAGATTTGATATTGATTAAAGTTAAGt
gi|117190 : GTTT--GTATAGTACCCTTATCT-TC-ACTAAATTTATCAAACCTA---CGATTGTTAAT---GTT-AATCCACT----TGTTTACATCATACAATCCTCTCATA---TT----TCCTGTTAGCCCATAAAATGAAATTTTGTAATTC-AGACATCTTCT--CGTAA-TG----G---------CAAGAAGTAGGA-TA-GT-------T-T-CTGCTAATG--C-ATTTTGGC--TGTTTGATTTATTTCCAAAAATTAAATGGATT-C-ATTAAA--------AC--T-GGACATGT-CT-TTGTTGGA-GATATTTACTTATATCTGAAAACAATGCTCTTATATGATTTCATTGCCAAATCAAATGTTGCA------GTGTTTCTGTGTGTATATGACAGAAAGTACA--TTTTTCATCAGATTTGATATTGATTAAAGTTAAGt
gi|117191 : GTTT--GTATAATACCCCAATCT-TAACTAAAATTTATCAAACCTA--CCA-TTCTTAAT---GTT-A----ATCAACTTGTTTACCTCATACAATGCTCTCATATTTCC--TATC-----AGCCCATGAAATGAAATTTTGTTATTC-AGACATCTGCTTGAGTAAATATATACTTTA-ATGGTAGGAAGTAGGA-TA--T-------TTT-CTGCTAATG--C-ATTTTGGC--TGTTTGATTTATTTCCAAAAAATAATTGGATTTC-ATTt
gi|117192 : TTTTTTG---CAACCCCAAATAGAAGTTGGATTTTTATTCCATT----GTTC--TTGAATATTT-ATCATATTT-A-GATGCATCGTTACATTTGATAAATGTGCTTGTGTATGAGAGCAATATCAAAAGATGTTTTGCA------CGGTTCCTGCGTGTTTCTTACAAAATGTATA--TCTTTTATTTGATTTAATGTT
gi|117193 : ttcttaatCATTATATTTGAAATAAATACTCGCATATGAGTACGTTGCCAAAACATATTTTACAGTCACTGTGTTTCTGTTAGTTTATTGCAAATAATA-----TTTTCATCAGATTTGATATTTATTAAAGTt