lowQualScore                  :     1                                                           3              
lowQualScore                  :     3          666   5555          2  2                     2   2      2       
lowQualScore                  :     .          ...   ....          .  .                     .   .      .       
lowQualScore                  :     5          999   3333          7  5                     5   5      5       
consensus                     :   TATAGAAGTAGAA---TGA----CATTTTGTTACGA-TTGCCAGTAAATTGTTACCTT-GAATGTATTA-AATCTCA
Reference ( gi|134533 )       :   TAAAGAAGTAGAA---TGA----CATTTTGTTATGA-TTGCCAGTAAATTGTTACCTT-GAA-GTATTA-AATCTCA
gi|134532                     :   TACAGAAGTAGAA---TGA----CATTTTGTTATGA-TTGCCAGTAAATTGTTACACT-GAATTTATTA-AATCTCA
gi|134535                     :   TAAAG--GTAGAA---TGA----CATTTTGTTAAGG-TTTCCAGTAAATTGTTGCCTTAGAT-GTATTA-AATCTCA
gi|134537                     : taTATAGAAGTAGAAC--TGAATGCCATTTTGTTACGA-TTGCCAGAAAATTGTTACCGT-AAATGTATCA-AATCTCA
gi|134536                     :   TATAGAAGCAGAA---TGA----CATTTTGTTATGA-TTGTCTGTAAACTGTTTTATT-AAATGTATAA-ATTCTCA
gi|134542                     :   TATAGAAATAACA---TGA----TATTTTATTACCA-TTTCCAGTAAATAGTTGCCTT-GAATGTATTA-AATTTCA
gi|134543                     :   TATAGAAGTAGAA---TGA----CATTTTGCTTCCA-TTGTCAGTAAACTGTTATCCT-CAATGTATAA-TATCT
gi|134541                     :   TATAGAAGTGGGA---TGC----CATTTTGTAACGA-TTGCCAGTAAATTGTCTTCTT-GACTTTATTA-AA
gi|134540                     :   TATAGAAGTGGAAAGCGGA----CAATTTATAACGA-GTGCCCGTAAATTGTTACCTT-GAATTTATTACAATCTCA
gi|134544                     :      AGAAATAGAA---TGA----CATTTTGTTACGACCTGCCAGAAAATTGTTACATT-GAATGTTTTA-AATCTCA
gi|134538                     :    atAGAAATAGAT---TGA----CATTTTGTTGTGA-TTGCCGGTAAATAATTACCTT-AAA-TAATTA-AATCTCA
gi|134547                     :   tgtAGAAACAGAT---TGA----CAATT-GTTATGA-TT-TTAGTAGATTATTACCTT-GAA-TTATTA-AATCTCA
gi|134545                     :      AGAAGTAAAC---TGA----CACTTTGCTACGA-TGGCCAGTATAGTGTTATTTT-GAATGCATTA-CATCTCA
gi|134546                     :    atAGAAACAGAA---TGA----TATTTTTTT-CGA-TTGCCAGTAAATTGTTACCTT-TACTGAATTA-CGTCTCA
gi|134539                     :      tGAAGAAAAA---TGA----TATTTTGTTACAA-CTGCCAGTAAACTGTTACCTT-GAATGGATTT-AATCTTA
gi|134534                     :    tatgAAGTAGAA---TGA----CATTTTGTTATGA-CTGACAGGAAATTGTTACTTT-GAGTGTATTA-AATCTCA
gi|134548                     :     tataAGTAAAA---TGA----CATATTGTAAAGA-TTGCCAATAAATTGTTACCAT-GCATGTATTA-AATCTCA

lowQualScore                  :              666   5555              2                              2       
lowQualScore                  :              ...   ....              .                              .       
lowQualScore                  :              555   0000              4                              4       
consensus                     : TATAGAAGTAGAA---TGA----CATTTTGTTACGAT-TGCCAGTAAATTGTTACCTTGAATGTATTA-AATCTCA
Reference ( family-854 )      : TATAGAAGTAGAA---TGA----CATTTTGTTACGAT-TGCCAGTAAATTGTTACCTTGAATGTATTA-AATCTCA
gi|134532                     : TACAGAAGTAGAA---TGA----CATTTTGTTATGAT-TGCCAGTAAATTGTTACACTGAATTTATTA-AATCTCA
gi|134533                     : TAAAGAAGTAGAA---TGA----CATTTTGTTATGAT-TGCCAGTAAATTGTTACCTTGAA-GTATTA-AATCTCA
gi|134534                     : TATA-AAGTAGAA---TGA----CATTTTGTTATGAC-TGACAGGAAATTGTTACTTTGAGTGTATTA-AATCTCA
gi|134535                     : TATAAAGGTAGAA---TGA----CATTTTGTTAAGGT-TTCCAGTAAATTGTTGCCTTAGATGTATTA-AATCTCA
gi|134536                     : TATAGAAGCAGAA---TGA----CATTTTGTTATGAT-TGTCTGTAAACTGTTTTATTAAATGTATAA-ATTCTCA
gi|134537                     : TATAGAAGTAGAAC--TGAATGCCATTTTGTTACGAT-TGCCAGAAAATTGTTACCGTAAATGTATCA-AATCTCA
gi|134538                     : TGTAGAAATAGAT---TGA----CATTTTGTTGTGAT-TGCCGGTAAATAATTACCTTAAATA-ATTA-AATCTCA
gi|134539                     : TATGGAAGAAAAA---TGA----TATTTTGTTACAAC-TGCCAGTAAACTGTTACCTTGAATGGATTT-AATCTTA
gi|134540                     : TATAGAAGTGGAAAGCGGA----CAATTTATAACGAG-TGCCCGTAAATTGTTACCTTGAATTTATTACAATCTCA
gi|134541                     : TATAGAAGTGGGA---TGC----CATTTTGTAACGAT-TGCCAGTAAATTGTCTTCTTGACTTTATTA-AA
gi|134542                     : TATAGAAATAACA---TGA----TATTTTATTACCAT-TTCCAGTAAATAGTTGCCTTGAATGTATTA-AATTTCA
gi|134543                     : TATAGAAGTAGAA---TGA----CATTTTGCTTCCAT-TGTCAGTAAACTGTTATCCTCAATGTATAA-TATCT
gi|134544                     :  ATAGAAATAGAA---TGA----CATTTTGTTACGACCTGCCAGAAAATTGTTACATTGAATGTTTTA-AATCTCA
gi|134545                     :  ATAGAAGTAAAC---TGA----CACTTTGCTACGAT-GGCCAGTATAGTGTTATTTTGAATGCATTA-CATCTCA
gi|134546                     :   TAGAAACAGAA---TGA----TATTTTTTT-CGAT-TGCCAGTAAATTGTTACCTTTACTGAATTA-CGTCTCA
gi|134547                     :    AGAAACAGAT---TGA----CAATT-GTTATGAT-T-TTAGTAGATTATTACCTTGAAT-TATTA-AATCTCA
gi|134548                     :       AGTAAAA---TGA----CATATTGTAAAGAT-TGCCAATAAATTGTTACCATGCATGTATTA-AATCTCA

lowQualScore                  :              666   5555              2                              2       
lowQualScore                  :              ...   ....              .                              .       
lowQualScore                  :              555   0000              4                              4       
consensus                     : TATAGAAGTAGAA---TGA----CATTTTGTTACGAT-TGCCAGTAAATTGTTACCTTGAATGTATTA-AATCTCA
Reference ( family-854 )      : TATAGAAGTAGAA---TGA----CATTTTGTTACGAT-TGCCAGTAAATTGTTACCTTGAATGTATTA-AATCTCA
gi|134532                     : TACAGAAGTAGAA---TGA----CATTTTGTTATGAT-TGCCAGTAAATTGTTACACTGAATTTATTA-AATCTCA
gi|134533                     : TAAAGAAGTAGAA---TGA----CATTTTGTTATGAT-TGCCAGTAAATTGTTACCTTGAA-GTATTA-AATCTCA
gi|134534                     : TATA-AAGTAGAA---TGA----CATTTTGTTATGAC-TGACAGGAAATTGTTACTTTGAGTGTATTA-AATCTCA
gi|134535                     : TATAAAGGTAGAA---TGA----CATTTTGTTAAGGT-TTCCAGTAAATTGTTGCCTTAGATGTATTA-AATCTCA
gi|134536                     : TATAGAAGCAGAA---TGA----CATTTTGTTATGAT-TGTCTGTAAACTGTTTTATTAAATGTATAA-ATTCTCA
gi|134537                     : TATAGAAGTAGAAC--TGAATGCCATTTTGTTACGAT-TGCCAGAAAATTGTTACCGTAAATGTATCA-AATCTCA
gi|134538                     : TGTAGAAATAGAT---TGA----CATTTTGTTGTGAT-TGCCGGTAAATAATTACCTTAAATA-ATTA-AATCTCA
gi|134539                     : TATGGAAGAAAAA---TGA----TATTTTGTTACAAC-TGCCAGTAAACTGTTACCTTGAATGGATTT-AATCTTA
gi|134540                     : TATAGAAGTGGAAAGCGGA----CAATTTATAACGAG-TGCCCGTAAATTGTTACCTTGAATTTATTACAATCTCA
gi|134541                     : TATAGAAGTGGGA---TGC----CATTTTGTAACGAT-TGCCAGTAAATTGTCTTCTTGACTTTATTA-AA
gi|134542                     : TATAGAAATAACA---TGA----TATTTTATTACCAT-TTCCAGTAAATAGTTGCCTTGAATGTATTA-AATTTCA
gi|134543                     : TATAGAAGTAGAA---TGA----CATTTTGCTTCCAT-TGTCAGTAAACTGTTATCCTCAATGTATAA-TATCT
gi|134544                     :  ATAGAAATAGAA---TGA----CATTTTGTTACGACCTGCCAGAAAATTGTTACATTGAATGTTTTA-AATCTCA
gi|134545                     :  ATAGAAGTAAAC---TGA----CACTTTGCTACGAT-GGCCAGTATAGTGTTATTTTGAATGCATTA-CATCTCA
gi|134546                     :   TAGAAACAGAA---TGA----TATTTTTTT-CGAT-TGCCAGTAAATTGTTACCTTTACTGAATTA-CGTCTCA
gi|134547                     :    AGAAACAGAT---TGA----CAATT-GTTATGAT-T-TTAGTAGATTATTACCTTGAAT-TATTA-AATCTCA
gi|134548                     :       AGTAAAA---TGA----CATATTGTAAAGAT-TGCCAATAAATTGTTACCATGCATGTATTA-AATCTCA


blockSeqs                     :              AGC   ATGC              C                              C
blockSeqs                     :              C     .                 .                              .
blockSeqs                     :              .     .                 .                              .
blockSeqs                     :              .     .                 .                              .
blockSeqs                     :              .     .                 .                              .
blockSeqs                     :              .     .                 .                              .
blockSeqs                     :              .     .                 .                              .
blockSeqs                     :              .     .                 .                              .
blockSeqs                     :              .     .                 .                              .
blockSeqs                     :              .     .                 .                              .
blockSeqs                     :              .     .                 .                              .
blockSeqs                     :              .     .                 .                              .
blockSeqs                     :              .     .                 .                              .
blockSeqs                     :              .     .                 .                              .
blockSeqs                     :              .     .                 .                              .
blockSeqs                     :              .     .                 .                              .


blockSeqCons                  : 
originalCons                  : TATAGAAGTAGAA---TGA----CATTTTGTTACGAT-TGCCAGTAAATTGTTACCTTGAATGTATTA-AATCTCA
finalCons                     : TATAGAAGTAGAA---TGA----CATTTTGTTACGAT-TGCCAGTAAATTGTTACCTTGAATGTATTA-AATCTCA

lowQualScore                  :              666   5555              2                              2       
lowQualScore                  :              ...   ....              .                              .       
lowQualScore                  :              555   0000              4                              4       
consensus                     : TATAGAAGTAGAA---TGA----CATTTTGTTACGAT-TGCCAGTAAATTGTTACCTTGAATGTATTA-AATCTCA
Reference ( family-854 )      : TATAGAAGTAGAA---TGA----CATTTTGTTACGAT-TGCCAGTAAATTGTTACCTTGAATGTATTA-AATCTCA
gi|134532                     : TACAGAAGTAGAA---TGA----CATTTTGTTATGAT-TGCCAGTAAATTGTTACACTGAATTTATTA-AATCTCA
gi|134533                     : TAAAGAAGTAGAA---TGA----CATTTTGTTATGAT-TGCCAGTAAATTGTTACCTTGAA-GTATTA-AATCTCA
gi|134534                     : TATA-AAGTAGAA---TGA----CATTTTGTTATGAC-TGACAGGAAATTGTTACTTTGAGTGTATTA-AATCTCA
gi|134535                     : TATAAAGGTAGAA---TGA----CATTTTGTTAAGGT-TTCCAGTAAATTGTTGCCTTAGATGTATTA-AATCTCA
gi|134536                     : TATAGAAGCAGAA---TGA----CATTTTGTTATGAT-TGTCTGTAAACTGTTTTATTAAATGTATAA-ATTCTCA
gi|134537                     : TATAGAAGTAGAAC--TGAATGCCATTTTGTTACGAT-TGCCAGAAAATTGTTACCGTAAATGTATCA-AATCTCA
gi|134538                     : TGTAGAAATAGAT---TGA----CATTTTGTTGTGAT-TGCCGGTAAATAATTACCTTAAATA-ATTA-AATCTCA
gi|134539                     : TATGGAAGAAAAA---TGA----TATTTTGTTACAAC-TGCCAGTAAACTGTTACCTTGAATGGATTT-AATCTTA
gi|134540                     : TATAGAAGTGGAAAGCGGA----CAATTTATAACGAG-TGCCCGTAAATTGTTACCTTGAATTTATTACAATCTCA
gi|134541                     : TATAGAAGTGGGA---TGC----CATTTTGTAACGAT-TGCCAGTAAATTGTCTTCTTGACTTTATTA-AA
gi|134542                     : TATAGAAATAACA---TGA----TATTTTATTACCAT-TTCCAGTAAATAGTTGCCTTGAATGTATTA-AATTTCA
gi|134543                     : TATAGAAGTAGAA---TGA----CATTTTGCTTCCAT-TGTCAGTAAACTGTTATCCTCAATGTATAA-TATCT
gi|134544                     :  ATAGAAATAGAA---TGA----CATTTTGTTACGACCTGCCAGAAAATTGTTACATTGAATGTTTTA-AATCTCA
gi|134545                     :  ATAGAAGTAAAC---TGA----CACTTTGCTACGAT-GGCCAGTATAGTGTTATTTTGAATGCATTA-CATCTCA
gi|134546                     :   TAGAAACAGAA---TGA----TATTTTTTT-CGAT-TGCCAGTAAATTGTTACCTTTACTGAATTA-CGTCTCA
gi|134547                     :    AGAAACAGAT---TGA----CAATT-GTTATGAT-T-TTAGTAGATTATTACCTTGAAT-TATTA-AATCTCA
gi|134548                     :       AGTAAAA---TGA----CATATTGTAAAGAT-TGCCAATAAATTGTTACCATGCATGTATTA-AATCTCA