lowQualScore : 1111
lowQualScore : 33 6 5 77 444 33 5555 6666 4 5 5555 555
lowQualScore : .. . . .. ... .. .... .... . . .... ...
lowQualScore : 77 9 5 22 111 22 3333 6666 9 1 3333 000
consensus : ATATAC--TGAACAAAATAAGNAA-CTTCCGCTGTGTTTA---AGTGCAG--A----TATAT-NN-AAATATGAAAACAAGGNTT----AAATTATTTTTATAT---GTATT
Reference ( gi|160529 ) : ATATAC--TGAACAAAATAAGTAA-TTTCCGCTGTGTTTA---AGTGCAG--A----TATAT-GT-AAATATGAAAACAAGGGTT----AAATTATTTTTATAT---GTATT
gi|160530 : ATATAC--TGAACAAAATAAGTAA-CTTCCGCTGTGTTTA---AGTGCAGATA----TATAT-GT-AAATACGAAAACAAGGGTA----AAATTATTTTTATAT---GTATT
gi|160534 : ATATAC--TTAACAAAATAAATAA-TTTCAGCTCTGTTTA---AGTGCAG--A----TATAT-GT-AAATATGAAAACAAGGGTT----AAATTATTTTTATAT---GTATT
gi|160532 : ATATAC--TGAACAAAATAAGTAA-CTTCCGCTGTGTTTA---AGTGCAG--A----TATAT-GC-AAATATTAAAGCAAGGGTT----AACTTATTTTTATAT---GTATT
gi|160533 : ATATAC--TGAACAAAATAAGTAA-CTTCTGAAGTGTTTA---AGTGCAG--A----TATAT-GT-AAATATGAAAACAAGGGTT----AAGTTATTTTTATAT---GTATT
gi|160531 : ATATAC--TGAACAAAATAAGTAA-CTTCCGCTGTGTTTA---AGTGCAG--A----TACAT-GT-AAATATGAAAACTAGGGTT----AAATTATTTCTATATAAGGTATT
gi|160535 : ATATAC--TGAACAAAA--AGAAA-CTACCGCTGTGTTTA---AGTGCAG--A----TACAT-CT-AAATATGAAA-----GTTT----ATATTAATGTTAT
gi|160536 : ATATAC--TGAACAAAAACAGAAA-CTATGGCTATGTTTA---AATGCAG--A----TGTAT-TG-AAATAAGAAAACCAAGTTA----AAATAATTTTTGTAT---GTATT
gi|160540 : ACATGC--TGAACAAAATAAGAAA-TTTCCGCTAT-CTTA---GGAGCAT--AATTTTATATAGCGAAATATGAAAACAA-AGT-----------TTTTTATAT---GTAT
gi|160538 : ATATAA--TGAACAAAACAAGAAA-CTTCCGCTGT-TTT----AGAAAAG--A----TATAT-CG-AAATATTAAAACA--GATTTATAAAATTA-TTTGATAT---GTAT
gi|160537 : ATATAC--TGAACAAACACAGAAA-CTTCCGCTGTGTCGA---AGTACAG--G----TATAT---------------CAAGT-TT----AAATTACTTTTGTAT---ATAT
gi|160539 : ACACAC--TGAACAAAACAAGAAA-CATCCTCTTTATTTACTAAGTGTAG--A----CTTAT-CG-AAATATCAAAACAGAGTTT----TAATTATTTTT
gi|160541 : TATACAACGAACAAAATAAGTTA-CTTCCGCTGTGTTTA---AGTGCAG--A----TATAT-GT-AAATATAAAAACAAGGGTT----AAATTATCTTTATAT---ATA
gi|160542 : TATAC--TGAACAAAA-ATGGAA-ACTACGCTGTGTTTA---AGTGCAG--A----TATAT--C-ATATATGAAAACACTGCGT----AAATTATTTTTACAT---AAATT
gi|160543 : TAC--GGAACAAAA-AACAAA-CGTCCGCGATGTTTA---AGTGCAG--A----TATAC-CA-AAATATGAAAACAA-ATTT----AAACTA-TTTTATAT---GTA
gi|160544 : TGC--TGAACAAAAACAGAAA-CTTCCGCTATGTTTA---AGTGCAG--
gi|160545 : AATAAATAAACTTCCGCTATGTTTA----GTGCAG--A----TATAT-TG-ATATATGAAAACAAAGTTT----AAATTATTTGTATAT---GTAT
gi|160546 : AA-CTTCCTATATGTTTA---AGTGCAG--A----TATAT-CG-AAA-ATGAAAACAAAGTTG----ATGTTATTTTCATTT---GTA
Alignments
lowQualScore : 1111
lowQualScore : 33 6 1 2 333 33 5555 0000 0 1 444 444
lowQualScore : .. . . . ... .. .... .... . . ... ...
lowQualScore : 44 0 0 2 999 11 0000 6666 6 0 111 777
consensus : ATATAC--TGAACAAAATAAGNAA-CTTCCGCTGTGTTTA---AGTGCAG--A----TATAT--NNAAATATGAAAACAAGGTTT---AAATTATTTTTATAT---GTATT
Reference ( family-852 ) : ATATAC--TGAACAAAATAAGNAA-CTTCCGCTGTGTTTA---AGTGCAG--A----TATAT--NNAAATATGAAAACAAGGNTT---AAATTATTTTTATAT---GTATT
gi|160529 : ATATAC--TGAACAAAATAAGTAA-TTTCCGCTGTGTTTA---AGTGCAG--A----TATAT--GTAAATATGAAAACAAGGGTT---AAATTATTTTTATAT---GTATT
gi|160530 : ATATAC--TGAACAAAATAAGTAA-CTTCCGCTGTGTTTA---AGTGCAGATA----TATAT--GTAAATACGAAAACAAGGGTA---AAATTATTTTTATAT---GTATT
gi|160531 : ATATAC--TGAACAAAATAAGTAA-CTTCCGCTGTGTTTA---AGTGCAG--A----TACAT--GTAAATATGAAAACTAGGGTT---AAATTATTTCTATATAAGGTATT
gi|160532 : ATATAC--TGAACAAAATAAGTAA-CTTCCGCTGTGTTTA---AGTGCAG--A----TATAT--GCAAATATTAAAGCAAGGGTT---AACTTATTTTTATAT---GTATT
gi|160533 : ATATAC--TGAACAAAATAAGTAA-CTTCTGAAGTGTTTA---AGTGCAG--A----TATAT--GTAAATATGAAAACAAGGGTT---AAGTTATTTTTATAT---GTATT
gi|160534 : ATATAC--TTAACAAAATAAATAA-TTTCAGCTCTGTTTA---AGTGCAG--A----TATAT--GTAAATATGAAAACAAGGGTT---AAATTATTTTTATAT---GTATT
gi|160535 : ATATAC--TGAACAAAA--AGAAA-CTACCGCTGTGTTTA---AGTGCAG--A----TACAT--CTAAATATGAAA-----GTTT---ATATTAATGTTAT
gi|160536 : ATATAC--TGAACAAAAACAGAAA-CTATGGCTATGTTTA---AATGCAG--A----TGTAT--TGAAATAAGAAAACCAAGTTA---AAATAATTTTTGTAT---GTATT
gi|160537 : ATATAC--TGAACAAACACAGAAA-CTTCCGCTGTGTCGA---AGTACAG--G----TATAT---------------CAAG-TTT---AAATTACTTTTGTAT---ATAT
gi|160538 : ATATAA--TGAACAAAACAAGAAA-CTTCCGCTGT-TTT----AGAAAAG--A----TATAT--CGAAATATTAAAAC-AGATTTATAAAATTA-TTTGATAT---GTAT
gi|160539 : ACACAC--TGAACAAAACAAGAAA-CATCCTCTTTATTTACTAAGTGTAG--A----CTTAT--CGAAATATCAAAACAGAGTTT---TAATTATTTTT
gi|160540 : ACATGC--TGAACAAAATAAGAAA-TTTCCGCTAT-CTTA---GGAGCAT--AATTTTATATAGCGAAATATGAAAACAAAGT-----------TTTTTATAT---GTAT
gi|160541 : TATACAACGAACAAAATAAGTTA-CTTCCGCTGTGTTTA---AGTGCAG--A----TATAT--GTAAATATAAAAACAAGGGTT---AAATTATCTTTATAT---ATA
gi|160542 : TATAC--TGAACAAAA-ATGGAA-ACTACGCTGTGTTTA---AGTGCAG--A----TATAT---CATATATGAAAACACTGCGT---AAATTATTTTTACAT---AAATT
gi|160543 : TAC--GGAACAAAA-AACAAA-CGTCCGCGATGTTTA---AGTGCAG--A----TATAC--CAAAATATGAAAACAA-ATTT---AAACTA-TTTTATAT---GTA
gi|160544 : TGC--TGAACAAAAACAGAAA-CTTCCGCTATGTTTA---AGTGCAG--
gi|160545 : AATAAATAAACTTCCGCTATGTTTA----GTGCAG--A----TATAT--TGATATATGAAAACAAAGTTT---AAATTATTTGTATAT---GTAT
gi|160546 : AA-CTTCCTATATGTTTA---AGTGCAG--A----TATAT--CGAAA-ATGAAAACAAAGTTG---ATGTTATTTTCATTT---GTA
Alignments
lowQualScore : 1111
lowQualScore : 33 6 1 2 333 33 5555 0000 0 1 444 444
lowQualScore : .. . . . ... .. .... .... . . ... ...
lowQualScore : 44 0 0 2 999 11 0000 6666 6 8 111 777
consensus : ATATAC--TGAACAAAATAAGNAA-CTTCCGCTGTGTTTA---AGTGCAG--A----TATAT--NNAAATATGAAAACAAGGTTT---AAATTATTTTTATAT---GTATT
Reference ( family-852 ) : ATATAC--TGAACAAAATAAGNAA-CTTCCGCTGTGTTTA---AGTGCAG--A----TATAT--NNAAATATGAAAACAAGGTTT---AAATTATTTTTATAT---GTATT
gi|160529 : ATATAC--TGAACAAAATAAGTAA-TTTCCGCTGTGTTTA---AGTGCAG--A----TATAT--GTAAATATGAAAACAAGGGTT---AAATTATTTTTATAT---GTATT
gi|160530 : ATATAC--TGAACAAAATAAGTAA-CTTCCGCTGTGTTTA---AGTGCAGATA----TATAT--GTAAATACGAAAACAAGGGTA---AAATTATTTTTATAT---GTATT
gi|160531 : ATATAC--TGAACAAAATAAGTAA-CTTCCGCTGTGTTTA---AGTGCAG--A----TACAT--GTAAATATGAAAACTAGGGTT---AAATTATTTCTATATAAGGTATT
gi|160532 : ATATAC--TGAACAAAATAAGTAA-CTTCCGCTGTGTTTA---AGTGCAG--A----TATAT--GCAAATATTAAAGCAAGGGTT---AACTTATTTTTATAT---GTATT
gi|160533 : ATATAC--TGAACAAAATAAGTAA-CTTCTGAAGTGTTTA---AGTGCAG--A----TATAT--GTAAATATGAAAACAAGGGTT---AAGTTATTTTTATAT---GTATT
gi|160534 : ATATAC--TTAACAAAATAAATAA-TTTCAGCTCTGTTTA---AGTGCAG--A----TATAT--GTAAATATGAAAACAAGGGTT---AAATTATTTTTATAT---GTATT
gi|160535 : ATATAC--TGAACAAAA--AGAAA-CTACCGCTGTGTTTA---AGTGCAG--A----TACAT--CTAAATATGAAA-----GTTT---ATATTAATGTTAT
gi|160536 : ATATAC--TGAACAAAAACAGAAA-CTATGGCTATGTTTA---AATGCAG--A----TGTAT--TGAAATAAGAAAACCAAGTTA---AAATAATTTTTGTAT---GTATT
gi|160537 : ATATAC--TGAACAAACACAGAAA-CTTCCGCTGTGTCGA---AGTACAG--G----TATAT---------------CAAG-TTT---AAATTACTTTTGTAT---ATAT
gi|160538 : ATATAA--TGAACAAAACAAGAAA-CTTCCGCTGT-TTT----AGAAAAG--A----TATAT--CGAAATATTAAAAC-AGATTTATAAAATTA-TTTGATAT---GTAT
gi|160539 : ACACAC--TGAACAAAACAAGAAA-CATCCTCTTTATTTACTAAGTGTAG--A----CTTAT--CGAAATATCAAAACAGAGTTT---TAATTATTTTT
gi|160540 : ACATGC--TGAACAAAATAAGAAA-TTTCCGCTAT-CTTA---GGAGCAT--AATTTTATATAGCGAAATATGAAAACAAAGT-----------TTTTTATAT---GTAT
gi|160541 : TATACAACGAACAAAATAAGTTA-CTTCCGCTGTGTTTA---AGTGCAG--A----TATAT--GTAAATATAAAAACAAGGGTT---AAATTATCTTTATAT---ATA
gi|160542 : TATAC--TGAACAAAA-ATGGAA-ACTACGCTGTGTTTA---AGTGCAG--A----TATAT---CATATATGAAAACACTGCGT---AAATTATTTTTACAT---AAATT
gi|160543 : TAC--GGAACAAAA-AACAAA-CGTCCGCGATGTTTA---AGTGCAG--A----TATAC--CAAAATATGAAAACAA-ATTT---AAACTA-TTTTATAT---GTA
gi|160544 : TGC--TGAACAAAAACAGAAA-CTTCCGCTATGTTTA---AGTGCAG--
gi|160545 : AATAAATAAACTTCCGCTATGTTTA----GTGCAG--A----TATAT--TGATATATGAAAACAAAGTTT---AAATTATTTGTATAT---GTAT
gi|160546 : AA-CTTCCTATATGTTTA---AGTGCAG--A----TATAT--CGAAA-ATGAAAACAAAGTTG---ATGTTATTTTCATTT---GTA
blockSeqs : AA T T A CTA AT ATTT AGCG G ATA AAG
blockSeqs : . T T . . . . GT G . .
blockSeqs : . T T . . . . GT G . .
blockSeqs : . T T . . . . GC G . .
blockSeqs : . T T . . . . GT G . .
blockSeqs : . A A . . . . GT T . .
blockSeqs : . A A . . . . CT T . .
blockSeqs : . C A . . . . TG T . .
blockSeqs : . C A . . . . CG T . .
blockSeqs : . T A . . . . CG T . .
blockSeqs : . T A . . . . GT T . .
blockSeqs : . A T . . . . CA G . .
blockSeqs : . T G . . . . TG C . .
blockSeqs : . . A . . . . CG T . .
blockSeqs : . . A . . . . C T .
blockSeqs : . T . . . . . T .
blockSeqs : . . .
blockSeqCons :
originalCons : ATATAC--TGAACAAAATAAGNAA-CTTCCGCTGTGTTTA---AGTGCAG--A----TATAT--NNAAATATGAAAACAAGGTTT---AAATTATTTTTATAT---GTATT
finalCons : ATATAC--TGAACAAAATAAGNAA-CTTCCGCTGTGTTTA---AGTGCAG--A----TATAT--NNAAATATGAAAACAAGGTTT---AAATTATTTTTATAT---GTATT
Alignments
lowQualScore : 1111
lowQualScore : 33 6 1 2 333 33 5555 0000 0 1 444 444
lowQualScore : .. . . . ... .. .... .... . . ... ...
lowQualScore : 44 0 0 2 999 11 0000 6666 6 8 111 777
consensus : ATATAC--TGAACAAAATAAGNAA-CTTCCGCTGTGTTTA---AGTGCAG--A----TATAT--NNAAATATGAAAACAAGGTTT---AAATTATTTTTATAT---GTATT
Reference ( family-852 ) : ATATAC--TGAACAAAATAAGNAA-CTTCCGCTGTGTTTA---AGTGCAG--A----TATAT--NNAAATATGAAAACAAGGTTT---AAATTATTTTTATAT---GTATT
gi|160529 : ATATAC--TGAACAAAATAAGTAA-TTTCCGCTGTGTTTA---AGTGCAG--A----TATAT--GTAAATATGAAAACAAGGGTT---AAATTATTTTTATAT---GTATT
gi|160530 : ATATAC--TGAACAAAATAAGTAA-CTTCCGCTGTGTTTA---AGTGCAGATA----TATAT--GTAAATACGAAAACAAGGGTA---AAATTATTTTTATAT---GTATT
gi|160531 : ATATAC--TGAACAAAATAAGTAA-CTTCCGCTGTGTTTA---AGTGCAG--A----TACAT--GTAAATATGAAAACTAGGGTT---AAATTATTTCTATATAAGGTATT
gi|160532 : ATATAC--TGAACAAAATAAGTAA-CTTCCGCTGTGTTTA---AGTGCAG--A----TATAT--GCAAATATTAAAGCAAGGGTT---AACTTATTTTTATAT---GTATT
gi|160533 : ATATAC--TGAACAAAATAAGTAA-CTTCTGAAGTGTTTA---AGTGCAG--A----TATAT--GTAAATATGAAAACAAGGGTT---AAGTTATTTTTATAT---GTATT
gi|160534 : ATATAC--TTAACAAAATAAATAA-TTTCAGCTCTGTTTA---AGTGCAG--A----TATAT--GTAAATATGAAAACAAGGGTT---AAATTATTTTTATAT---GTATT
gi|160535 : ATATAC--TGAACAAAA--AGAAA-CTACCGCTGTGTTTA---AGTGCAG--A----TACAT--CTAAATATGAAA-----GTTT---ATATTAATGTTAT
gi|160536 : ATATAC--TGAACAAAAACAGAAA-CTATGGCTATGTTTA---AATGCAG--A----TGTAT--TGAAATAAGAAAACCAAGTTA---AAATAATTTTTGTAT---GTATT
gi|160537 : ATATAC--TGAACAAACACAGAAA-CTTCCGCTGTGTCGA---AGTACAG--G----TATAT---------------CAAG-TTT---AAATTACTTTTGTAT---ATAT
gi|160538 : ATATAA--TGAACAAAACAAGAAA-CTTCCGCTGT-TTT----AGAAAAG--A----TATAT--CGAAATATTAAAAC-AGATTTATAAAATTA-TTTGATAT---GTAT
gi|160539 : ACACAC--TGAACAAAACAAGAAA-CATCCTCTTTATTTACTAAGTGTAG--A----CTTAT--CGAAATATCAAAACAGAGTTT---TAATTATTTTT
gi|160540 : ACATGC--TGAACAAAATAAGAAA-TTTCCGCTAT-CTTA---GGAGCAT--AATTTTATATAGCGAAATATGAAAACAAAGT-----------TTTTTATAT---GTAT
gi|160541 : TATACAACGAACAAAATAAGTTA-CTTCCGCTGTGTTTA---AGTGCAG--A----TATAT--GTAAATATAAAAACAAGGGTT---AAATTATCTTTATAT---ATA
gi|160542 : TATAC--TGAACAAAA-ATGGAA-ACTACGCTGTGTTTA---AGTGCAG--A----TATAT---CATATATGAAAACACTGCGT---AAATTATTTTTACAT---AAATT
gi|160543 : TAC--GGAACAAAA-AACAAA-CGTCCGCGATGTTTA---AGTGCAG--A----TATAC--CAAAATATGAAAACAA-ATTT---AAACTA-TTTTATAT---GTA
gi|160544 : TGC--TGAACAAAAACAGAAA-CTTCCGCTATGTTTA---AGTGCAG--
gi|160545 : AATAAATAAACTTCCGCTATGTTTA----GTGCAG--A----TATAT--TGATATATGAAAACAAAGTTT---AAATTATTTGTATAT---GTAT
gi|160546 : AA-CTTCCTATATGTTTA---AGTGCAG--A----TATAT--CGAAA-ATGAAAACAAAGTTG---ATGTTATTTTCATTT---GTA