lowQualScore : 111 111111 11 1 3
lowQualScore : 6 3 2 4 3 1 777 1 555555 2 0 6 33 0 4 5 3 7 5 0 2 2 3 77777 777 3 555 0 1 3 3 6
lowQualScore : . . . . . . ... . ...... . . . .. . . . . . . . . . . ..... ... . ... . . . . .
lowQualScore : 0 7 6 8 5 2 000 8 888888 9 1 6 55 8 4 0 9 5 2 8 1 2 5 77777 555 1 444 8 8 3 5 9
consensus : CTACCTTCGCTGCTGGGCGGCATGGCGTCTCAGTACAGACTATTCGTTACCGTTTGCGTCGTAACTCCCAACCAATCAGAGTAGCGCGGCGCCCATACACTAGNACTGGTCAAATAA-TGACCCGACGTCACCTCGCTGCCATGCTTTTATGNGTGCGACGTCATCTGAACTGGAGCTAAATGGCAGCCCANGTTCACCAGGCAATACTTGACCCAGGTCAATGTTTTCA-----CATGG--CC-G---GAAGTTTCCCTTGATCCTTGC-A-AAAATTGAGAATATCTGGGTCATAAAA
Reference ( gi|3557 ) : CTACCTTTGCTGCTGGGCAGCATGGCATTTTAGTACAGACTATTCGTTACCATTTGCGTCGTAACTCCCAACTAATCAGAGTAGCGCGGCGCCCATACACTAGTACTGGTCAAATAA-TGACCCGATGTCACATCGCTGCCATGTTTGTATGTGTGTGACGTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCAATACTTGACCCAGGTCAATGTTTTCA-----CATGG--TC-G---GAAGTTTCCCTTGATCCTTGCAA-AAAATTAAGAATATTTGGGTCATAAAA
gi|3559 : CTACCTTCGCTGCTTGGCAGCATGGCGTATTAGTACAGAATATTCGTTACCGTTTGCGTCGTAACTCCCAACTAATCAGAGT-GCGAGGCGCCCATACACTAGAACTGGTCAAATAA-TGACCCGACGTTACCTCGCTGCCATGCTTTTATGGGTGCGATGTCATCTGAACTGGAGTTAAATGGCAGCCCATGTTCACCAGGCAATACTTGAACCAGGTCAATGTTTTCA-----CATGGCATG-GCTAGAAGTTCCCCTTGATCCTTGC-A-AAAATTGAGAATATCTGGGTCATTAAA
gi|3558 : CTACCTTCGCTGCTTGGCAGCATGGCGTTTCAGTACAGACTATTCGTTACCGTTTGCGTCGTAACTCCTAACTAATCAGAGT-GCGAGGCGCCCATACACTAGAACTGGTCAAATAA-TGACCTGACGTTACCTCGCTGCCATGCTTTTATGTGTGCGACGTCATCTGAACTGAAGTTAAATGGCAGCCCATGTTCACCAGGCAATAATTGAACCAGGTCAATGTTTTCACATGGCATGG--CC-G---GAAGTTTCCCTCGATCCTTGC-A-AATATTGAGAATATCTAGGTCATTAAA
gi|3560 : CTACCTTCGCTGCTTGGCAGTATGGTGTTTCAGTACAGACTATTCGTTACCGTTTTCGTCGTAACTCCCAACTTATCAGAGT-GCGAGGCACCCATACACTAGAACTGGTCAAATAA-TGACCCGACGTTACCTCGCTGCCATGCTTTTATGTGTGAGACGTCATCTGAACTGGAGCTAAATGGCAGACCATGTTTGTCAGGCAATACTTGAACCAGGTTAATGTTTTCA-----CAACG--CC-G---GAAGTTTCCCTTGATCTTTGC-A-AAAATTGAGAATATCTGGGTCATTAAA
gi|3561 : CTACCTTCGCTGCTGGGCAGCATTGCGTTTCAGTAAAGACTATTCGTTACTGTTTGCGTCGTAA-----AACTAATCAGAGTAGTGTGGCGCCCATACACTAGAACTAGTTCAATAA-TGACC-GGCGTCACCTCGCTGCCATGCTTTTATGTGTGCAATGTCATCTGAACTGGGGCTAAATGGCAGCCCATGTTCACTAGGCAATACTTGACCCAGGTCACTGTTTTCA-----CATGG--CC-A---GAAGTTTCCCTTGATCCTTGC-A-AAAATTGAAAATATCTGGGTCATAAAA
gi|3563 : CTACATTCGTTGCTGGGCAACATGGCGTCTCAGTACAGACTGTTTGTTACCGCTTGCGACGTAACTCCCAACTAATCAGAGTAGCGTGGCGCCCATATACTAGTACTGGTCAAATAA-TGACCCGACGTCACCTCGCTGTCATGCTTTTATGTGTGCAACGTCATCTGAACTGGAGCTAAATTGCAGCCCAGGTTAACCATATAATACTTGACCCAGGTCAATGTTTTCA-----CATGG--CC-G---GAAGCT
gi|3564 : CTACCTTCGCTGTTGGGCGGCATGGTGTCTCAGTACAGACTATTCATTATCGTTTAAGTCGTAACTCAAAACTAATCAGAGTAGCACGGCGCCAATACACGAGTTCTAGTAAAAAAAATGACCGTACGTCACCGCACTGCCATGCTTTTATGGGTGCGACATCATCTCTACTGGAGCTGAAAGGCAGTCCAAATTCACCAGGCAATATTTGACACAGGTCAATGTTTTCA-----CATGG--TC-G---AAAGTTTCCCTTGCTCCTTAC-C-AAAATTGAGAATATCTGG
gi|3565 : CTACCTTCGCTGCTGGGCGGCATAGTATCTCAGCACAGACTATTTGTTATCGTTTGCGTCGAAACTCCCAACCATTCAGAGTACGGCGGCGCCCATACACT------GGTCAAATAT-TGACCCGACGTCACCGCGTTGCCACGCATTTATAGGTGCAACGTCATCTGAACTGGAGCTGAATGGCAGTCCTGGTTCACCAGACAATACTTGGCACAAATCAATGTTTTGA-----CATTG--CC-G---TTAATTTCACCTGATGCTTAC-C-AAAATTGAAAATATCTGGGTCTTAAA
gi|3566 : CTACCTCCACCGCTGGGCGACATAGTGTCTCAGCACAGCGTTTTCGTTATTAATTGC---------------CAAGCAGAGTA---CGGCGCCCAT----T--TACTGGTCAAACAA-TGAGCCGACGTCACTGCGCTGCAACGCTTTTATGGGTTCGACGTCATCTTAGCTGGAGAT---TGGCAGACCTGGTTCACCAGACAATACTT-AT--------ATATTTGCA-----TATTG--CCTT---TTAGTTTCCATTGATCCTTATCG-AAAATTAGGAATATCTGGTTCATAAA
gi|3562 : CTACCTTCGCTGCTGGGCAGTATGGCATTTCAGTATAGACTATTCGTTA
gi|3567 : CCACCTTCACTGCTGGGCGGCATGGTGTCTCGTCACAGACTA-GCGTTA
gi|3568 : TAACTTCGCTGCTGGACAGCATGACGTTTCAGTACAGACTATTCGTTACCGT
gi|3569 : TAGGCGACATGGTGTATCAGCATAGACTATTCGCGAT-ATTTGCGTCGTAACGCCCAACCAATCAGAG---CACGGTGCCCATACTTTAATA------AAATAA-CGTCACGGCGTCACCTCACTGCAAGATTTTTATTGGCGCGACGTGATCTGAACTTGAG---AATGTCAGACCATGTTCACTACGCAATACTTGGCACAGATCAATGTC---------------------------TTTCCCTCAA-CCTTACCA-TATA-TGAGCATATATGGGTAATAAA
gi|3570 : tcactaaACGGTGTGTCAGCGCAGACCATCCGTAATCGCTTGCGATGCAAAACTCAGCCAATCAG---AGCACGAGGCCCATA------TATCGGTCAAACAA-TGATGCGACGTCAC
gi|3571 : ACAGAATATTCGTAATCGTTTACGTCGCAACTACCAGCCAATTAGAG---CACGGTGCCTATA---------------------TGACCCGACGTCACCGCGCTGCCA--------------------CA---GAACTGGAG---AATGGAAGACCAGGTTCACTGGGCAATACTTGGCACAGATCAATGTTTTCA-----CATGG--TC-G---GTAGTTTCCCCTGATCCTTGC-A-AAAATTGAGAATATCCGGGTCAGAAAcatgtaccat
gi|3572 : GTCGTACCGATCAACCAATCAGAG----ACGGCGCCAATACACT------GGTCAAATAA-TA--------TCACCGCTCTGTCAGGCTTTTATGGACACGACGTCATTTGCACTGGA---AAATGGCAGAACATGTTAACCACGCAGTACTTGGCATAAATCAACGTCCTCA-----CTTGT--CC-G---GTAGTTTCCCCTGATCT---CAACCAAACTGAGCATATCTGG
gi|3573 : CACATAA-TGACCAGACGTCACCTCCCTGCCATGCTTTTATGTGTTCGATGTCATCTGAACTGGATTTAAATGGCAGCCCGGGTTCACCAGGCAATACTTGACCCGGGTCAATGTTTTCA-----CATGG--CC-G---AAAGTTTCCCTTTATCCTTGC-A-AAAATTGAGAATATCTGGGTCATAAAA
gi|3574 : TAA-TGACCCGACGTCACATCGCTGTCATGTTTTTATGTGTGCGACGTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCAATACTTGACCCAGGTCAATGTTCTCA-----CATGG--CC-G---GAAGTTTCTCTTGGTCCTTGC-A-AAAATTAAGAATATCTGGGTCATAAAA
Alignments
lowQualScore : 111 111 11111
lowQualScore : 2 333 0 111 0 2 0 2 4 0 1 1 2 44444 2 0 3 3 44
lowQualScore : . ... . ... . . . . . . . . . ..... . . . . ..
lowQualScore : 2 555 8 111 8 7 7 0 1 1 2 0 5 33333 9 1 1 1 22
consensus : CTACCTTCGCTGCTGGGCGGCATGGCGTCTCAGTACAGACTATTCGTTACCGTTTGCGTCGTAACTCCCAACCAATCAGAGTAGCGCGGCGCCCATACACTAGTACTGGTCAAATAA-TGACCCGACGTCACCTCGCTGCCATGCTTTTATGNGTGCGACGTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCAATACTTGACCCAGGTCAATGTTTTCA-----CATGGCC-GGAAGTTTCCCTTGATCCTTG-C-AA--AAATTGAGAATATCTGGGTCATAAAA
Reference ( family-851 ) : CTACCTTCGCTGCTGGGCGGCATGGCGTCTCAGTACAGACTATTCGTTACCGTTTGCGTCGTAACTCCCAACCAATCAGAGTAGCGCGGCGCCCATACACTAGNACTGGTCAAATAA-TGACCCGACGTCACCTCGCTGCCATGCTTTTATGNGTGCGACGTCATCTGAACTGGAGCTAAATGGCAGCCCANGTTCACCAGGCAATACTTGACCCAGGTCAATGTTTTCA-----CATGGCC-GGAAGTTTCCCTTGATCCTTG-C-AA--AAATTGAGAATATCTGGGTCATAAAA
gi|3557 : CTACCTTTGCTGCTGGGCAGCATGGCATTTTAGTACAGACTATTCGTTACCATTTGCGTCGTAACTCCCAACTAATCAGAGTAGCGCGGCGCCCATACACTAGTACTGGTCAAATAA-TGACCCGATGTCACATCGCTGCCATGTTTGTATGTGTGTGACGTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCAATACTTGACCCAGGTCAATGTTTTCA-----CATGGTC-GGAAGTTTCCCTTGATCCTTG-CAAA--AAATTAAGAATATTTGGGTCATAAAA
gi|3558 : CTACCTTCGCTGCTTGGCAGCATGGCGTTTCAGTACAGACTATTCGTTACCGTTTGCGTCGTAACTCCTAACTAATCAGAGT-GCGAGGCGCCCATACACTAGAACTGGTCAAATAA-TGACCTGACGTTACCTCGCTGCCATGCTTTTATGTGTGCGACGTCATCTGAACTGAAGTTAAATGGCAGCCCATGTTCACCAGGCAATAATTGAACCAGGTCAATGTTTTCACATGGCATGGCC-GGAAGTTTCCCTCGATCCTTG-C-AA--ATATTGAGAATATCTAGGTCATTAAA
gi|3559 : CTACCTTCGCTGCTTGGCAGCATGGCGTATTAGTACAGAATATTCGTTACCGTTTGCGTCGTAACTCCCAACTAATCAGAGT-GCGAGGCGCCCATACACTAGAACTGGTCAAATAA-TGACCCGACGTTACCTCGCTGCCATGCTTTTATGGGTGCGATGTCATCTGAACTGGAGTTAAATGGCAGCCCATGTTCACCAGGCAATACTTGAACCAGGTCAATGTTTTCACATGGCATGGCT-AGAAGTTCCCCTTGATCCTTG-C-AA--AAATTGAGAATATCTGGGTCATTAAA
gi|3560 : CTACCTTCGCTGCTTGGCAGTATGGTGTTTCAGTACAGACTATTCGTTACCGTTTTCGTCGTAACTCCCAACTTATCAGAGT-GCGAGGCACCCATACACTAGAACTGGTCAAATAA-TGACCCGACGTTACCTCGCTGCCATGCTTTTATGTGTGAGACGTCATCTGAACTGGAGCTAAATGGCAGACCATGTTTGTCAGGCAATACTTGAACCAGGTTAATGTTTTCA-----CAACGCC-GGAAGTTTCCCTTGATCTTTG-C-AA--AAATTGAGAATATCTGGGTCATTAAA
gi|3561 : CTACCTTCGCTGCTGGGCAGCATTGCGTTTCAGTAAAGACTATTCGTTACTGTTTGCGTCGTAA-----AACTAATCAGAGTAGTGTGGCGCCCATACACTAGAACTAGTTCAATAA-TGACC-GGCGTCACCTCGCTGCCATGCTTTTATGTGTGCAATGTCATCTGAACTGGGGCTAAATGGCAGCCCATGTTCACTAGGCAATACTTGACCCAGGTCACTGTTTTCA-----CATGGCC-AGAAGTTTCCCTTGATCCTTG-C-AA--AAATTGAAAATATCTGGGTCATAAAA
gi|3562 : CTACCTTCGCTGCTGGGCAGTATGGCATTTCAGTATAGACTATTCGTTA
gi|3563 : CTACATTCGTTGCTGGGCAACATGGCGTCTCAGTACAGACTGTTTGTTACCGCTTGCGACGTAACTCCCAACTAATCAGAGTAGCGTGGCGCCCATATACTAGTACTGGTCAAATAA-TGACCCGACGTCACCTCGCTGTCATGCTTTTATGTGTGCAACGTCATCTGAACTGGAGCTAAATTGCAGCCCAGGTTAACCATATAATACTTGACCCAGGTCAATGTTTTCA-----CATGGCC-GGAAGCT
gi|3564 : CTACCTTCGCTGTTGGGCGGCATGGTGTCTCAGTACAGACTATTCATTATCGTTTAAGTCGTAACTCAAAACTAATCAGAGTAGCACGGCGCCAATACACGAGTTCTAGTAAAAAAAATGACCGTACGTCACCGCACTGCCATGCTTTTATGGGTGCGACATCATCTCTACTGGAGCTGAAAGGCAGTCCAAATTCACCAGGCAATATTTGACACAGGTCAATGTTTTCA-----CATGGTC-GAAAGTTTCCCTTGCTCCTTA-C-CA--AAATTGAGAATATCTGG
gi|3565 : CTACCTTCGCTGCTGGGCGGCATAGTATCTCAGCACAGACTATTTGTTATCGTTTGCGTCGAAACTCCCAACCATTCAGAGTACGGCGGCGCCCATACACT------GGTCAAATAT-TGACCCGACGTCACCGCGTTGCCACGCATTTATAGGTGCAACGTCATCTGAACTGGAGCTGAATGGCAGTCCTGGTTCACCAGACAATACTTGGCACAAATCAATGTTTTGA-----CATTGCC-GTTAATTTCACCTGATGCTTA-C-CA--AAATTGAAAATATCTGGGTCTTAAA
gi|3566 : CTACCTCCACCGCTGGGCGACATAGTGTCTCAGCACAGCGTTTTCGTTAT-----------TAATT----GCCAAGCAGAGTA---CGGCGCCCAT----T--TACTGGTCAAACAA-TGAGCCGACGTCACTGCGCTGCAACGCTTTTATGGGTTCGACGTCATCTTAGCTGGAGAT---TGGCAGACCTGGTTCACCAGACAATACTT-AT--------ATATTTGCA-----TATTGCCTTTTAGTTTCCATTGATCCTTATC-GA--AAATTAGGAATATCTGGTTCATAAA
gi|3567 : CCACCTTCACTGCTGGGCGGCATGGTGTCTCGTCACAGACTA-GCGTTA
gi|3568 : TAACTTCGCTGCTGGACAGCATGACGTTTCAGTACAGACTATTCGTTACCGT
gi|3569 : TCACTAATAGGCGACATGGTGTATCAGCATAGACTATTCGCGAT-ATTTGCGTCGTAACGCCCAACCAATCAGAG---CACGGTGCCCATACTTTAATA------AAATAA-CGTCACGGCGTCACCTCACTGCAAGATTTTTATTGGCGCGACGTGATCTGAACTTGAG---AATGTCAGACCATGTTCACTACGCAATACTTGGCACAGATCAATGTC----------------------TTTCCCTCAA-CCTTA-C-CA--TATATGAGCATATATGGGTAATAAA
gi|3570 : ACGGTGTGTCAGCGCAGACCATCCGTAATCGCTTGCGATGCAAAACTCAGCCAATCAG---AGCACGAGGCCCATA------TATCGGTCAAACAA-TGATGCGACGTCACCATG-TACCAT
gi|3571 : ACAGAATATTCGTAATCGTTTACGTCGCAACTACCAGCCAATTAGAG---CACGGTGCCTATA---------------------TGACCCGACGTCACCGCGCTGCCA--------------------CA---GAACTGGAG---AATGGAAGACCAGGTTCACTGGGCAATACTTGGCACAGATCAATGTTTTCA-----CATGGTC-GGTAGTTTCCCCTGATCCTTG-C-AA--AAATTGAGAATATCCGGGTCAGAAA
gi|3572 : GTCGTACCGATCAACCAATCAGAG----ACGGCGCCAATACACT------GGTCAAATAA-TA--------TCACCGCTCTGTCAGGCTTTTATGGACACGACGTCATTTGCACTGGA---AAATGGCAGAACATGTTAACCACGCAGTACTTGGCATAAATCAACGTCCTCA-----CTTGTCC-GGTAGTTTCCCCTGATCT----C-AACCAAACTGAGCATATCTGG
gi|3573 : CACATAA-TGACCAGACGTCACCTCCCTGCCATGCTTTTATGTGTTCGATGTCATCTGAACTGGATTTAAATGGCAGCCCGGGTTCACCAGGCAATACTTGACCCGGGTCAATGTTTTCA-----CATGGCC-GAAAGTTTCCCTTTATCCTTG-C-AA--AAATTGAGAATATCTGGGTCATAAAA
gi|3574 : TAA-TGACCCGACGTCACATCGCTGTCATGTTTTTATGTGTGCGACGTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCAATACTTGACCCAGGTCAATGTTCTCA-----CATGGCC-GGAAGTTTCTCTTGGTCCTTG-C-AA--AAATTAAGAATATCTGGGTCATAAAA
Alignments
lowQualScore : 111 11111
lowQualScore : 2 88 111 0 2 0 2 4 0 1 1 2 44444 2 0 3 3 44
lowQualScore : . .. ... . . . . . . . . . ..... . . . . ..
lowQualScore : 2 22 444 8 7 7 0 1 1 2 4 5 33333 9 1 1 1 22
consensus : CTACCTTCGCTGCTGGGCGGCATGGCGTCTCAGTACAGACTATTCGTTACCGTTTGCGTCGTAACTCCCAACCAATCAGAGTAGCGCGGCGCCCATACACTAGTACTGGTCAAATAA-TGACCCGACGTCACCTCGCTGCCATGCTTTTATGNGTGCGACGTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCAATACTTGACCCAGGTCAATGTTTTCA-----CATGGCC-GGAAGTTTCCCTTGATCCTTG-C-AA--AAATTGAGAATATCTGGGTCATAAAA
Reference ( family-851 ) : CTACCTTCGCTGCTGGGCGGCATGGCGTCTCAGTACAGACTATTCGTTACCGTTTGCGTCGTAACTCCCAACCAATCAGAGTAGCGCGGCGCCCATACACTAGTACTGGTCAAATAA-TGACCCGACGTCACCTCGCTGCCATGCTTTTATGNGTGCGACGTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCAATACTTGACCCAGGTCAATGTTTTCA-----CATGGCC-GGAAGTTTCCCTTGATCCTTG-C-AA--AAATTGAGAATATCTGGGTCATAAAA
gi|3557 : CTACCTTTGCTGCTGGGCAGCATGGCATTTTAGTACAGACTATTCGTTACCATTTGCGTCGTAACTCCCAACTAATCAGAGTAGCGCGGCGCCCATACACTAGTACTGGTCAAATAA-TGACCCGATGTCACATCGCTGCCATGTTTGTATGTGTGTGACGTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCAATACTTGACCCAGGTCAATGTTTTCA-----CATGGTC-GGAAGTTTCCCTTGATCCTTG-CAAA--AAATTAAGAATATTTGGGTCATAAAA
gi|3558 : CTACCTTCGCTGCTTGGCAGCATGGCGTTTCAGTACAGACTATTCGTTACCGTTTGCGTCGTAACTCCTAACTAATCAGAGT-GCGAGGCGCCCATACACTAGAACTGGTCAAATAA-TGACCTGACGTTACCTCGCTGCCATGCTTTTATGTGTGCGACGTCATCTGAACTGAAGTTAAATGGCAGCCCATGTTCACCAGGCAATAATTGAACCAGGTCAATGTTTTCACATGGCATGGCC-GGAAGTTTCCCTCGATCCTTG-C-AA--ATATTGAGAATATCTAGGTCATTAAA
gi|3559 : CTACCTTCGCTGCTTGGCAGCATGGCGTATTAGTACAGAATATTCGTTACCGTTTGCGTCGTAACTCCCAACTAATCAGAGT-GCGAGGCGCCCATACACTAGAACTGGTCAAATAA-TGACCCGACGTTACCTCGCTGCCATGCTTTTATGGGTGCGATGTCATCTGAACTGGAGTTAAATGGCAGCCCATGTTCACCAGGCAATACTTGAACCAGGTCAATGTTTTCACATGGCATGGCT-AGAAGTTCCCCTTGATCCTTG-C-AA--AAATTGAGAATATCTGGGTCATTAAA
gi|3560 : CTACCTTCGCTGCTTGGCAGTATGGTGTTTCAGTACAGACTATTCGTTACCGTTTTCGTCGTAACTCCCAACTTATCAGAGT-GCGAGGCACCCATACACTAGAACTGGTCAAATAA-TGACCCGACGTTACCTCGCTGCCATGCTTTTATGTGTGAGACGTCATCTGAACTGGAGCTAAATGGCAGACCATGTTTGTCAGGCAATACTTGAACCAGGTTAATGTTTTCA-----CAACGCC-GGAAGTTTCCCTTGATCTTTG-C-AA--AAATTGAGAATATCTGGGTCATTAAA
gi|3561 : CTACCTTCGCTGCTGGGCAGCATTGCGTTTCAGTAAAGACTATTCGTTACTGTTTGCGTCGTAA-----AACTAATCAGAGTAGTGTGGCGCCCATACACTAGAACTAGTTCAATAA-TGACC-GGCGTCACCTCGCTGCCATGCTTTTATGTGTGCAATGTCATCTGAACTGGGGCTAAATGGCAGCCCATGTTCACTAGGCAATACTTGACCCAGGTCACTGTTTTCA-----CATGGCC-AGAAGTTTCCCTTGATCCTTG-C-AA--AAATTGAAAATATCTGGGTCATAAAA
gi|3562 : CTACCTTCGCTGCTGGGCAGTATGGCATTTCAGTATAGACTATTCGTTA
gi|3563 : CTACATTCGTTGCTGGGCAACATGGCGTCTCAGTACAGACTGTTTGTTACCGCTTGCGACGTAACTCCCAACTAATCAGAGTAGCGTGGCGCCCATATACTAGTACTGGTCAAATAA-TGACCCGACGTCACCTCGCTGTCATGCTTTTATGTGTGCAACGTCATCTGAACTGGAGCTAAATTGCAGCCCAGGTTAACCATATAATACTTGACCCAGGTCAATGTTTTCA-----CATGGCC-GGAAGCT
gi|3564 : CTACCTTCGCTGTTGGGCGGCATGGTGTCTCAGTACAGACTATTCATTATCGTTTAAGTCGTAACTCAAAACTAATCAGAGTAGCACGGCGCCAATACACGAGTTCTAGTAAAAAAAATGACCGTACGTCACCGCACTGCCATGCTTTTATGGGTGCGACATCATCTCTACTGGAGCTGAAAGGCAGTCCAAATTCACCAGGCAATATTTGACACAGGTCAATGTTTTCA-----CATGGTC-GAAAGTTTCCCTTGCTCCTTA-C-CA--AAATTGAGAATATCTGG
gi|3565 : CTACCTTCGCTGCTGGGCGGCATAGTATCTCAGCACAGACTATTTGTTATCGTTTGCGTCGAAACTCCCAACCATTCAGAGTACGGCGGCGCCCATACACT------GGTCAAATAT-TGACCCGACGTCACCGCGTTGCCACGCATTTATAGGTGCAACGTCATCTGAACTGGAGCTGAATGGCAGTCCTGGTTCACCAGACAATACTTGGCACAAATCAATGTTTTGA-----CATTGCC-GTTAATTTCACCTGATGCTTA-C-CA--AAATTGAAAATATCTGGGTCTTAAA
gi|3566 : CTACCTCCACCGCTGGGCGACATAGTGTCTCAGCACAGCGTTTTCGTTAT-----------TAATT----GCCAAGCAGAGTA---CGGCGCCCAT----T--TACTGGTCAAACAA-TGAGCCGACGTCACTGCGCTGCAACGCTTTTATGGGTTCGACGTCATCTTAGCTGGAGAT---TGGCAGACCTGGTTCACCAGACAATACTT-AT--------ATATTTGCA-----TATTGCCTTTTAGTTTCCATTGATCCTTATC-GA--AAATTAGGAATATCTGGTTCATAAA
gi|3567 : CCACCTTCACTGCTGGGCGGCATGGTGTCTCGTCACAGACTA-GCGTTA
gi|3568 : TAACTTCGCTGCTGGACAGCATGACGTTTCAGTACAGACTATTCGTTACCGT
gi|3569 : TCACTAATAGGCGACATGGTGTATCAGCATAGACTATTCGCGAT-ATTTGCGTCGTAACGCCCAACCAATCAGAG---CACGGTGCCCATACTTTAATA------AAATAA-CGTCACGGCGTCACCTCACTGCAAGATTTTTATTGGCGCGACGTGATCTGAACTTGAG---AATGTCAGACCATGTTCACTACGCAATACTTGGCACAGATCAATGTC----------------------TTTCCCTCAA-CCTTA-C-CA--TATATGAGCATATATGGGTAATAAA
gi|3570 : ACGGTGTGTCAGCGCAGACCATCCGTAATCGCTTGCGATGCAAAACTCAGCCAATCAG---AGCACGAGGCCCATA------TATCGGTCAAACAA-TGATGCGACGTCACCATG-TACCAT
gi|3571 : ACAGAATATTCGTAATCGTTTACGTCGCAACTACCAGCCAATTAG---AGCACGGTGCCTAT--------------------A-TGACCCGACGTCACCGCGCTGCCA--------------------CA---GAACTGGAG---AATGGAAGACCAGGTTCACTGGGCAATACTTGGCACAGATCAATGTTTTCA-----CATGGTC-GGTAGTTTCCCCTGATCCTTG-C-AA--AAATTGAGAATATCCGGGTCAGAAA
gi|3572 : GTCGTACCGATCAACCAATCAGAG----ACGGCGCCAATACACT------GGTCAAATAA-TA--------TCACCGCTCTGTCAGGCTTTTATGGACACGACGTCATTTGCACTGGA---AAATGGCAGAACATGTTAACCACGCAGTACTTGGCATAAATCAACGTCCTCA-----CTTGTCC-GGTAGTTTCCCCTGATCT----C-AACCAAACTGAGCATATCTGG
gi|3573 : CACATAA-TGACCAGACGTCACCTCCCTGCCATGCTTTTATGTGTTCGATGTCATCTGAACTGGATTTAAATGGCAGCCCGGGTTCACCAGGCAATACTTGACCCGGGTCAATGTTTTCA-----CATGGCC-GAAAGTTTCCCTTTATCCTTG-C-AA--AAATTGAGAATATCTGGGTCATAAAA
gi|3574 : TAA-TGACCCGACGTCACATCGCTGTCATGTTTTTATGTGTGCGACGTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCAATACTTGACCCAGGTCAATGTTCTCA-----CATGGCC-GGAAGTTTCTCTTGGTCCTTG-C-AA--AAATTAAGAATATCTGGGTCATAAAA
blockSeqs : T TA AGA A T T C T C CATGG T T . CC
blockSeqs : A TA AGA . G T C T C CATGG . . . .
blockSeqs : T TA AGA . T C A T C . . . . .
blockSeqs : T TA AGA . T C C T C . . . . .
blockSeqs : T TA AGT . T C C G C . . . . .
blockSeqs : C T AGT . G C T A A . . . . .
blockSeqs : C T AAT . G C T G A . . . . .
blockSeqs : C T T . G A A G A . . . . .
blockSeqs : C A T . G T A T A . . . . .
blockSeqs : C A . . G C A G A . . . . .
blockSeqs : T . . . T . A T C . . . . .
blockSeqs : A . . . T . C G C . . . . .
blockSeqs : G . . . C T . . .
blockSeqs : .
blockSeqCons : TA
originalCons : CTACCTTCGCTGCTGGGCGGCATGGCGTCTCAGTACAGACTATTCGTTACCGTTTGCGTCGTAACTCCCAACCAATCAGAGTAGCGCGGCGCCCATACACTAGTACTGGTCAAATAA-TGACCCGACGTCACCTCGCTGCCATGCTTTTATGNGTGCGACGTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCAATACTTGACCCAGGTCAATGTTTTCA-----CATGGCC-GGAAGTTTCCCTTGATCCTTG-C-AA--AAATTGAGAATATCTGGGTCATAAAA
finalCons : CTACCTTCGCTGCTGGGCGGCATGGCGTCTCAGTACAGACTATTCGTTACCGTTTGCGTCGTAACTCCCAACCAATCAGAGTAGCGCGGCGCCCATACACTAGTACTGGTCAAATAA-TGACCCGACGTCACCTCGCTGCCATGCTTTTATGNGTGCGACGTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCAATACTTGACCCAGGTCAATGTTTTCA-----CATGGCC-GGAAGTTTCCCTTGATCCTTG-C-AA--AAATTGAGAATATCTGGGTCATAAAA
Alignments
lowQualScore : 111 11111
lowQualScore : 2 88 111 0 2 0 2 4 0 1 1 2 44444 2 0 3 3 44
lowQualScore : . .. ... . . . . . . . . . ..... . . . . ..
lowQualScore : 2 22 444 8 7 7 0 1 1 2 4 5 33333 9 1 1 1 22
consensus : CTACCTTCGCTGCTGGGCGGCATGGCGTCTCAGTACAGACTATTCGTTACCGTTTGCGTCGTAACTCCCAACCAATCAGAGTAGCGCGGCGCCCATACACTAGTACTGGTCAAATAA-TGACCCGACGTCACCTCGCTGCCATGCTTTTATGNGTGCGACGTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCAATACTTGACCCAGGTCAATGTTTTCA-----CATGGCC-GGAAGTTTCCCTTGATCCTTG-C-AA--AAATTGAGAATATCTGGGTCATAAAA
Reference ( family-851 ) : CTACCTTCGCTGCTGGGCGGCATGGCGTCTCAGTACAGACTATTCGTTACCGTTTGCGTCGTAACTCCCAACCAATCAGAGTAGCGCGGCGCCCATACACTAGTACTGGTCAAATAA-TGACCCGACGTCACCTCGCTGCCATGCTTTTATGNGTGCGACGTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCAATACTTGACCCAGGTCAATGTTTTCA-----CATGGCC-GGAAGTTTCCCTTGATCCTTG-C-AA--AAATTGAGAATATCTGGGTCATAAAA
gi|3557 : CTACCTTTGCTGCTGGGCAGCATGGCATTTTAGTACAGACTATTCGTTACCATTTGCGTCGTAACTCCCAACTAATCAGAGTAGCGCGGCGCCCATACACTAGTACTGGTCAAATAA-TGACCCGATGTCACATCGCTGCCATGTTTGTATGTGTGTGACGTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCAATACTTGACCCAGGTCAATGTTTTCA-----CATGGTC-GGAAGTTTCCCTTGATCCTTG-CAAA--AAATTAAGAATATTTGGGTCATAAAA
gi|3558 : CTACCTTCGCTGCTTGGCAGCATGGCGTTTCAGTACAGACTATTCGTTACCGTTTGCGTCGTAACTCCTAACTAATCAGAGT-GCGAGGCGCCCATACACTAGAACTGGTCAAATAA-TGACCTGACGTTACCTCGCTGCCATGCTTTTATGTGTGCGACGTCATCTGAACTGAAGTTAAATGGCAGCCCATGTTCACCAGGCAATAATTGAACCAGGTCAATGTTTTCACATGGCATGGCC-GGAAGTTTCCCTCGATCCTTG-C-AA--ATATTGAGAATATCTAGGTCATTAAA
gi|3559 : CTACCTTCGCTGCTTGGCAGCATGGCGTATTAGTACAGAATATTCGTTACCGTTTGCGTCGTAACTCCCAACTAATCAGAGT-GCGAGGCGCCCATACACTAGAACTGGTCAAATAA-TGACCCGACGTTACCTCGCTGCCATGCTTTTATGGGTGCGATGTCATCTGAACTGGAGTTAAATGGCAGCCCATGTTCACCAGGCAATACTTGAACCAGGTCAATGTTTTCACATGGCATGGCT-AGAAGTTCCCCTTGATCCTTG-C-AA--AAATTGAGAATATCTGGGTCATTAAA
gi|3560 : CTACCTTCGCTGCTTGGCAGTATGGTGTTTCAGTACAGACTATTCGTTACCGTTTTCGTCGTAACTCCCAACTTATCAGAGT-GCGAGGCACCCATACACTAGAACTGGTCAAATAA-TGACCCGACGTTACCTCGCTGCCATGCTTTTATGTGTGAGACGTCATCTGAACTGGAGCTAAATGGCAGACCATGTTTGTCAGGCAATACTTGAACCAGGTTAATGTTTTCA-----CAACGCC-GGAAGTTTCCCTTGATCTTTG-C-AA--AAATTGAGAATATCTGGGTCATTAAA
gi|3561 : CTACCTTCGCTGCTGGGCAGCATTGCGTTTCAGTAAAGACTATTCGTTACTGTTTGCGTCGTAA-----AACTAATCAGAGTAGTGTGGCGCCCATACACTAGAACTAGTTCAATAA-TGACC-GGCGTCACCTCGCTGCCATGCTTTTATGTGTGCAATGTCATCTGAACTGGGGCTAAATGGCAGCCCATGTTCACTAGGCAATACTTGACCCAGGTCACTGTTTTCA-----CATGGCC-AGAAGTTTCCCTTGATCCTTG-C-AA--AAATTGAAAATATCTGGGTCATAAAA
gi|3562 : CTACCTTCGCTGCTGGGCAGTATGGCATTTCAGTATAGACTATTCGTTA
gi|3563 : CTACATTCGTTGCTGGGCAACATGGCGTCTCAGTACAGACTGTTTGTTACCGCTTGCGACGTAACTCCCAACTAATCAGAGTAGCGTGGCGCCCATATACTAGTACTGGTCAAATAA-TGACCCGACGTCACCTCGCTGTCATGCTTTTATGTGTGCAACGTCATCTGAACTGGAGCTAAATTGCAGCCCAGGTTAACCATATAATACTTGACCCAGGTCAATGTTTTCA-----CATGGCC-GGAAGCT
gi|3564 : CTACCTTCGCTGTTGGGCGGCATGGTGTCTCAGTACAGACTATTCATTATCGTTTAAGTCGTAACTCAAAACTAATCAGAGTAGCACGGCGCCAATACACGAGTTCTAGTAAAAAAAATGACCGTACGTCACCGCACTGCCATGCTTTTATGGGTGCGACATCATCTCTACTGGAGCTGAAAGGCAGTCCAAATTCACCAGGCAATATTTGACACAGGTCAATGTTTTCA-----CATGGTC-GAAAGTTTCCCTTGCTCCTTA-C-CA--AAATTGAGAATATCTGG
gi|3565 : CTACCTTCGCTGCTGGGCGGCATAGTATCTCAGCACAGACTATTTGTTATCGTTTGCGTCGAAACTCCCAACCATTCAGAGTACGGCGGCGCCCATACACT------GGTCAAATAT-TGACCCGACGTCACCGCGTTGCCACGCATTTATAGGTGCAACGTCATCTGAACTGGAGCTGAATGGCAGTCCTGGTTCACCAGACAATACTTGGCACAAATCAATGTTTTGA-----CATTGCC-GTTAATTTCACCTGATGCTTA-C-CA--AAATTGAAAATATCTGGGTCTTAAA
gi|3566 : CTACCTCCACCGCTGGGCGACATAGTGTCTCAGCACAGCGTTTTCGTTAT-----------TAATT----GCCAAGCAGAGTA---CGGCGCCCAT----T--TACTGGTCAAACAA-TGAGCCGACGTCACTGCGCTGCAACGCTTTTATGGGTTCGACGTCATCTTAGCTGGAGAT---TGGCAGACCTGGTTCACCAGACAATACTT-AT--------ATATTTGCA-----TATTGCCTTTTAGTTTCCATTGATCCTTATC-GA--AAATTAGGAATATCTGGTTCATAAA
gi|3567 : CCACCTTCACTGCTGGGCGGCATGGTGTCTCGTCACAGACTA-GCGTTA
gi|3568 : TAACTTCGCTGCTGGACAGCATGACGTTTCAGTACAGACTATTCGTTACCGT
gi|3569 : TCACTAATAGGCGACATGGTGTATCAGCATAGACTATTCGCGAT-ATTTGCGTCGTAACGCCCAACCAATCAGAG---CACGGTGCCCATACTTTAATA------AAATAA-CGTCACGGCGTCACCTCACTGCAAGATTTTTATTGGCGCGACGTGATCTGAACTTGAG---AATGTCAGACCATGTTCACTACGCAATACTTGGCACAGATCAATGTC----------------------TTTCCCTCAA-CCTTA-C-CA--TATATGAGCATATATGGGTAATAAA
gi|3570 : ACGGTGTGTCAGCGCAGACCATCCGTAATCGCTTGCGATGCAAAACTCAGCCAATCAG---AGCACGAGGCCCATA------TATCGGTCAAACAA-TGATGCGACGTCACCATG-TACCAT
gi|3571 : ACAGAATATTCGTAATCGTTTACGTCGCAACTACCAGCCAATTAG---AGCACGGTGCCTAT--------------------A-TGACCCGACGTCACCGCGCTGCCA--------------------CA---GAACTGGAG---AATGGAAGACCAGGTTCACTGGGCAATACTTGGCACAGATCAATGTTTTCA-----CATGGTC-GGTAGTTTCCCCTGATCCTTG-C-AA--AAATTGAGAATATCCGGGTCAGAAA
gi|3572 : GTCGTACCGATCAACCAATCAGAG----ACGGCGCCAATACACT------GGTCAAATAA-TA--------TCACCGCTCTGTCAGGCTTTTATGGACACGACGTCATTTGCACTGGA---AAATGGCAGAACATGTTAACCACGCAGTACTTGGCATAAATCAACGTCCTCA-----CTTGTCC-GGTAGTTTCCCCTGATCT----C-AACCAAACTGAGCATATCTGG
gi|3573 : CACATAA-TGACCAGACGTCACCTCCCTGCCATGCTTTTATGTGTTCGATGTCATCTGAACTGGATTTAAATGGCAGCCCGGGTTCACCAGGCAATACTTGACCCGGGTCAATGTTTTCA-----CATGGCC-GAAAGTTTCCCTTTATCCTTG-C-AA--AAATTGAGAATATCTGGGTCATAAAA
gi|3574 : TAA-TGACCCGACGTCACATCGCTGTCATGTTTTTATGTGTGCGACGTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCAATACTTGACCCAGGTCAATGTTCTCA-----CATGGCC-GGAAGTTTCTCTTGGTCCTTG-C-AA--AAATTAAGAATATCTGGGTCATAAAA