lowQualScore : 11
lowQualScore : 3 66 2 2 777777 8888888 5555 33 33
lowQualScore : . .. . . ...... ....... .... .. ..
lowQualScore : 3 00 7 7 777777 7777777 0000 22 22
consensus : ACATCCAAA-TTTATAATAGCAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
Reference ( gi|132187 ) : ACATCCGAC-TTTATAATAGCAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
gi|132189 : ACATCCGAA-TTTATTATAGCAGTTTTCAA-TCT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTACAATTGTTGGTGAT--CAGATTTTAACGA
gi|132188 : ACATCCAAA-TTTATAATAGCAGATTTCAA-TGT-TG------AAATGTG-------GCT----CGGCCGACTATTC--GGTCAGTTTCAAACTGTTGGTGAT--CAGATTTTAACGA
gi|132191 : ACATCCGAA-TCTTTTATAGCAGTTTTCAA-TCT-TG------AAATGTG-------GTC----CGGCCGACTATTC--TGTCAGTTTCCAATTGTTGGTGAA--CAGATTTTAACGA
gi|132190 : ATATCCAAA-TTTATAATATACTTTTTCGA-TGT-TA------AAATGTG-------GTC----TGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
gi|132192 : ACATCCAAA-TTTATAATATAAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCAACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--
gi|132193 : ACATCTAAA-TTTTCAAAAGCAGTTTTCGA-TGT-TG------ACATGTG-------GTC----CGGCCGACTATTT--GGTCAGTTATCAACTGTTGGTGAT--CAGATTTTAACAA
gi|132194 : ACATCCAAA-TTTATAATAGAGATGTTCAA-TGT-TA------AAACGTG-------GTC----CGGCTGACTATTC--GGTCAGTTTCCAACGGTTAGTAAT--CAGAGTTTAACGA
gi|132195 : ACATCCAAA-TGTAAAAGAGCTGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGCCTATTC--GGTCAATTTCAAACTATTGGTGAT--CAGATATTAAC
gi|132196 : ACATCCAAA-TTCATAATAGCAGTTTTCAA-TGT-TG------AAATCTG-------G-C----CAGTC-------C--GGTCAGTTTCCAACTGTTGGTGTT--CAGATTTTAACGA
gi|132197 : ACATCCAAA-TTTATAATAGCGGTTTCCAA-TGC-TG------AAA-GTG-------GTC----CGGTTGATTATTC--GGTCAGTTTCCAACTGTTGATGATGGTAAATTTT
gi|132198 : ACATCCAAA-TTTATCATA-TAGGTTTATA-TGT-TG------AAATGTG-------GTC----CGGCCGACTTTTCGTGATCAATTTTTTAC----GAGGGT--CAATTTTTAACG
gi|132199 : CATC-AACATTTATAATAGCAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
gi|132200 : -TTTATAATAGCGGTTTTCAA-TG-------------------------------CGGTTGACCATTT--GGTCAGTTTCCAACTGTTGGTGAT--CAAATTTGAACGA
gi|132201 : caaaCAGTTTCCAACTGT-TGGTGATCAAATTTGAACGAGGGTCAATGCGGTTGACCATTT--GGTCAGTTTCCAACTGTTGGTGAT--CAAATTTGAACGA
gi|132202 : A-TGTCTT------AAAAATG-------ATT----CGGCCGACTATTC--TGTCAGTTTTCAACTGTTGATGAT--CAGATATTAACGA
gi|132204 : C----CGGTCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
gi|132203 : C----CGGTAGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
Alignments
lowQualScore : 2 2 777777 8888888 4444 33 33
lowQualScore : . . ...... ....... .... .. ..
lowQualScore : 5 5 222222 1111111 7777 11 11
consensus : ACATCCAAATTTATAATAGCAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
Reference ( family-850 ) : ACATCCAAATTTATAATAGCAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
gi|132187 : ACATCCGACTTTATAATAGCAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
gi|132188 : ACATCCAAATTTATAATAGCAGATTTCAA-TGT-TG------AAATGTG-------GCT----CGGCCGACTATTC--GGTCAGTTTCAAACTGTTGGTGAT--CAGATTTTAACGA
gi|132189 : ACATCCGAATTTATTATAGCAGTTTTCAA-TCT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTACAATTGTTGGTGAT--CAGATTTTAACGA
gi|132190 : ATATCCAAATTTATAATATACTTTTTCGA-TGT-TA------AAATGTG-------GTC----TGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
gi|132191 : ACATCCGAATCTTTTATAGCAGTTTTCAA-TCT-TG------AAATGTG-------GTC----CGGCCGACTATTC--TGTCAGTTTCCAATTGTTGGTGAA--CAGATTTTAACGA
gi|132192 : ACATCCAAATTTATAATATAAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCAACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--
gi|132193 : ACATCTAAATTTTCAAAAGCAGTTTTCGA-TGT-TG------ACATGTG-------GTC----CGGCCGACTATTT--GGTCAGTTATCAACTGTTGGTGAT--CAGATTTTAACAA
gi|132194 : ACATCCAAATTTATAATAGAGATGTTCAA-TGT-TA------AAACGTG-------GTC----CGGCTGACTATTC--GGTCAGTTTCCAACGGTTAGTAAT--CAGAGTTTAACGA
gi|132195 : ACATCCAAATGTAAAAGAGCTGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGCCTATTC--GGTCAATTTCAAACTATTGGTGAT--CAGATATTAAC
gi|132196 : ACATCCAAATTCATAATAGCAGTTTTCAA-TGT-TG------AAATCTG-------G-C----CAGTC-------C--GGTCAGTTTCCAACTGTTGGTGTT--CAGATTTTAACGA
gi|132197 : ACATCCAAATTTATAATAGCGGTTTCCAA-TGC-TG------AAA-GTG-------GTC----CGGTTGATTATTC--GGTCAGTTTCCAACTGTTGATGATGGTAAATTTT
gi|132198 : ACATCCAAATTTATCATA-TAGGTTTATA-TGT-TG------AAATGTG-------GTC----CGGCCGACTTTTCGTGATCAATTTTTTAC----GAGGGT--CAATTTTTAACG
gi|132199 : CATCAACATTTATAATAGCAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
gi|132200 : CAAATTTATAATAGCGGTTTTCAA-TG-------------------------------CGGTTGACCATTT--GGTCAGTTTCCAACTGTTGGTGAT--CAAATTTGAACGA
gi|132201 : CAGTTTCCAACTGT-TGGTGATCAAATTTGAACGAGGGTCAATGCGGTTGACCATTT--GGTCAGTTTCCAACTGTTGGTGAT--CAAATTTGAACGA
gi|132202 : A-TGTCTT------AAAAATG-------ATT----CGGCCGACTATTC--TGTCAGTTTTCAACTGTTGATGAT--CAGATATTAACGA
gi|132203 : C----CGGTAGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|132204 : C----CGGTCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
Alignments
lowQualScore : 2 2 777777 8888888 4444 33 33
lowQualScore : . . ...... ....... .... .. ..
lowQualScore : 5 5 222222 1111111 7777 11 11
consensus : ACATCCAAATTTATAATAGCAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
Reference ( family-850 ) : ACATCCAAATTTATAATAGCAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
gi|132187 : ACATCCGACTTTATAATAGCAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
gi|132188 : ACATCCAAATTTATAATAGCAGATTTCAA-TGT-TG------AAATGTG-------GCT----CGGCCGACTATTC--GGTCAGTTTCAAACTGTTGGTGAT--CAGATTTTAACGA
gi|132189 : ACATCCGAATTTATTATAGCAGTTTTCAA-TCT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTACAATTGTTGGTGAT--CAGATTTTAACGA
gi|132190 : ATATCCAAATTTATAATATACTTTTTCGA-TGT-TA------AAATGTG-------GTC----TGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
gi|132191 : ACATCCGAATCTTTTATAGCAGTTTTCAA-TCT-TG------AAATGTG-------GTC----CGGCCGACTATTC--TGTCAGTTTCCAATTGTTGGTGAA--CAGATTTTAACGA
gi|132192 : ACATCCAAATTTATAATATAAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCAACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--
gi|132193 : ACATCTAAATTTTCAAAAGCAGTTTTCGA-TGT-TG------ACATGTG-------GTC----CGGCCGACTATTT--GGTCAGTTATCAACTGTTGGTGAT--CAGATTTTAACAA
gi|132194 : ACATCCAAATTTATAATAGAGATGTTCAA-TGT-TA------AAACGTG-------GTC----CGGCTGACTATTC--GGTCAGTTTCCAACGGTTAGTAAT--CAGAGTTTAACGA
gi|132195 : ACATCCAAATGTAAAAGAGCTGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGCCTATTC--GGTCAATTTCAAACTATTGGTGAT--CAGATATTAAC
gi|132196 : ACATCCAAATTCATAATAGCAGTTTTCAA-TGT-TG------AAATCTG-------G-C----CAGTC-------C--GGTCAGTTTCCAACTGTTGGTGTT--CAGATTTTAACGA
gi|132197 : ACATCCAAATTTATAATAGCGGTTTCCAA-TGC-TG------AAA-GTG-------GTC----CGGTTGATTATTC--GGTCAGTTTCCAACTGTTGATGATGGTAAATTTT
gi|132198 : ACATCCAAATTTATCATA-TAGGTTTATA-TGT-TG------AAATGTG-------GTC----CGGCCGACTTTTCGTGATCAATTTTTTAC----GAGGGT--CAATTTTTAACG
gi|132199 : CATCAACATTTATAATAGCAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
gi|132200 : CAAATTTATAATAGCGGTTTTCAA-TG-------------------------------CGGTTGACCATTT--GGTCAGTTTCCAACTGTTGGTGAT--CAAATTTGAACGA
gi|132201 : CAGTTTCCAACTGT-TGGTGATCAAATTTGAACGAGGGTCAATGCGGTTGACCATTT--GGTCAGTTTCCAACTGTTGGTGAT--CAAATTTGAACGA
gi|132202 : A-TGTCTT------AAAAATG-------ATT----CGGCCGACTATTC--TGTCAGTTTTCAACTGTTGATGAT--CAGATATTAACGA
gi|132203 : C----CGGTAGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|132204 : C----CGGTCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
blockSeqs : C C GTGATC AACGAGG AATG GT GG
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blockSeqCons :
originalCons : ACATCCAAATTTATAATAGCAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
finalCons : ACATCCAAATTTATAATAGCAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
Alignments
lowQualScore : 2 2 777777 8888888 4444 33 33
lowQualScore : . . ...... ....... .... .. ..
lowQualScore : 5 5 222222 1111111 7777 11 11
consensus : ACATCCAAATTTATAATAGCAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
Reference ( family-850 ) : ACATCCAAATTTATAATAGCAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
gi|132187 : ACATCCGACTTTATAATAGCAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
gi|132188 : ACATCCAAATTTATAATAGCAGATTTCAA-TGT-TG------AAATGTG-------GCT----CGGCCGACTATTC--GGTCAGTTTCAAACTGTTGGTGAT--CAGATTTTAACGA
gi|132189 : ACATCCGAATTTATTATAGCAGTTTTCAA-TCT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTACAATTGTTGGTGAT--CAGATTTTAACGA
gi|132190 : ATATCCAAATTTATAATATACTTTTTCGA-TGT-TA------AAATGTG-------GTC----TGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
gi|132191 : ACATCCGAATCTTTTATAGCAGTTTTCAA-TCT-TG------AAATGTG-------GTC----CGGCCGACTATTC--TGTCAGTTTCCAATTGTTGGTGAA--CAGATTTTAACGA
gi|132192 : ACATCCAAATTTATAATATAAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCAACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--
gi|132193 : ACATCTAAATTTTCAAAAGCAGTTTTCGA-TGT-TG------ACATGTG-------GTC----CGGCCGACTATTT--GGTCAGTTATCAACTGTTGGTGAT--CAGATTTTAACAA
gi|132194 : ACATCCAAATTTATAATAGAGATGTTCAA-TGT-TA------AAACGTG-------GTC----CGGCTGACTATTC--GGTCAGTTTCCAACGGTTAGTAAT--CAGAGTTTAACGA
gi|132195 : ACATCCAAATGTAAAAGAGCTGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGCCTATTC--GGTCAATTTCAAACTATTGGTGAT--CAGATATTAAC
gi|132196 : ACATCCAAATTCATAATAGCAGTTTTCAA-TGT-TG------AAATCTG-------G-C----CAGTC-------C--GGTCAGTTTCCAACTGTTGGTGTT--CAGATTTTAACGA
gi|132197 : ACATCCAAATTTATAATAGCGGTTTCCAA-TGC-TG------AAA-GTG-------GTC----CGGTTGATTATTC--GGTCAGTTTCCAACTGTTGATGATGGTAAATTTT
gi|132198 : ACATCCAAATTTATCATA-TAGGTTTATA-TGT-TG------AAATGTG-------GTC----CGGCCGACTTTTCGTGATCAATTTTTTAC----GAGGGT--CAATTTTTAACG
gi|132199 : CATCAACATTTATAATAGCAGTTTTCAA-TGT-TG------AAATGTG-------GTC----CGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA
gi|132200 : CAAATTTATAATAGCGGTTTTCAA-TG-------------------------------CGGTTGACCATTT--GGTCAGTTTCCAACTGTTGGTGAT--CAAATTTGAACGA
gi|132201 : CAGTTTCCAACTGT-TGGTGATCAAATTTGAACGAGGGTCAATGCGGTTGACCATTT--GGTCAGTTTCCAACTGTTGGTGAT--CAAATTTGAACGA
gi|132202 : A-TGTCTT------AAAAATG-------ATT----CGGCCGACTATTC--TGTCAGTTTTCAACTGTTGATGAT--CAGATATTAACGA
gi|132203 : C----CGGTAGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|132204 : C----CGGTCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAACGA