lowQualScore                  :                  1111111                                                                  111111   2   22222222222222222222222                                                                                 
lowQualScore                  :     6       5  5 4444444         3   3  1      0            2    2 8    0 33  1      0  8 000000 2 1   88888888888888888888888         4 2      5555        5   88     2 2            7                      6 
lowQualScore                  :     .       .  . .......         .   .  .      .            .    . .    . ..  .      .  . ...... . .   .......................         . .      ....        .   ..     . .            .                      . 
lowQualScore                  :     0       4  0 6666666         6   3  6      7            7    7 0    3 77  8      2  0 333333 7 3   55555555555555555555555         0 5      0000        1   55     4 4            1                      0 
consensus                     : TATATATATAAAGAA-T---G---GGAGTTAAC-AAA-TTCACTAAAGGACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTG-A------A-AATGT-------T-------G-------AATTTTGTATA-TATTAT----ATCATAATNTGC-TTCTTT-A-CATCTGATATTGTTAAACTGTTACAATGAAATAAAAA
Reference ( gi|102963 )       : TATACATATAAAGAA-T---G---GGAGTTAAC-AAA-TTCACTAAAAGACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTG-A------A-A-TGT-------T-------G-------AATTTTGTACA-TATTAT----ATCATAATGTGC-TTCTTT-A-CATCTGATATTGCTAAACTGTTACAATGAAATAAAGA
gi|102964                     : TATATATATAAAGAA-T---G---GGAGTTAAC-AAA-TTCACTTAAAGACTTGGAAAGT-TTGC-T-CTTAAT--TTTACAAAGGTG-A------A-AATGT-------T-------G-------AATTTTGTACA-TATTAT----AACATAATGTGC-TTCTTT-A-CATCTGATATTGTTAAACTGTTACAATGAAATAAAA
gi|102966                     : TATATATATAAAAAA-T---A---GGAGATAAC-AAA-TTCACTAAAATACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTG-A------A-AATGT-------T-------G-------AGTTTTGTACA-TATTAT----ATTATAATGTGC-TTCTTT-A-CATCTGATATTGTTAAACTGTTACAATGAAATAAAA
gi|102965                     : TATATATATAAAGAA-T---G---GGAGTTAAC-AAA-CTCACTAAAAGACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTGAA------A-A-TGT-------T-------G-------AAATCTGCATA-TATTAT----ATTATAATGTGT-TTCTTT-A-CATCTGGTATTGTTAAACTGTTACAATGAAATAAAA
gi|102967                     : TATATATATAAAGAA-T---G---GGAGTTAAC-AAA-TTCATTATATGACTTGGAAAGT-TTAC-C-TTTAAT--GTTACAAATGTG-A------ACA-TGT-------T-------G-------AATTTTGTATA-TATTAC----ATCATAATGTGC-TTCTTT-A-CATCTGATATTGTTAAATTG---CAAAGAAA
gi|102968                     : TATATATATATAAGA-T---G---GGAGTTCAT-AAA-TTTACTAAAGG-TTTGGAAAGT-TTGT-C-CATAGT--TTCACAAATATG-A------A-AATGT-------T-------A-------AATTTTGTATA-TACTAT----ACCATCATTTGC-ATCTTA-A-CATCTGATATTGTTAAACTGTTACAATGAAATAAAA
gi|102970                     :      ATATAAA-AA-T---ACTCGGCGTTGAT-AAA-TTAACTGGAGGATCTGAAAAGTTTTGC-C-CTTA----TTTAAAAA---A-A------G-A-TGT-------TATATCAGA-------AATTATTTTTA-TATTAT----ATTATCA---------TTT-G-TATCT--TGTTA--AAACTGTTACAATGAAATA
gi|102971                     :        ACAAAAAACT---C---AGAGTTAAT-AAA-TTTACTAAAGAACCTGGAAAGT-TTGC-CTCTTAAT--TT-ACGAACATGTA------A-A-TGT-------T-------ATATCAGAAATTTTGAACA-TACTAC----ATCATAATTTGTATTTTTT-A-CATCTGATTTTGTTAAACTGTTACAATGAAATAAAA
gi|102969                     :        ATAAATAA-TTTTG---ACAGT--AC-AAAATTAACAAAAGGACTTGAAAAGT-TTGC-C-CTTAAT--TTTACATATATGAA------A-A-TGT-------T-------A-------AA--------------AT----ATCAGAATTTGC-TTCTTT-A-CATCTGATATTGCTAAACTGTTACAATGAAAAAAAA
gi|102972                     :                   taaataaGATTTAAT-AAA-TTTACTAAAGAACCTGGAAACT-TTGC-CTCTTAAT--TT-ACAAATATG-AG-----A-A-TGT-------T----------------ATATCAGAAA-TACTAC----ATCATAATTTGC-ATCTTTTA-CATCTGATTTTGTTAAACTGTTACAATGAAATAAAA
gi|102973                     :                               AAC-AAA-----CTAAAAGAACTGGAAAGT-TTGC-CTCTTATTAATTTACAAATATG-A------A-AATGT-------T-------ATATCAGAAATTTTGTATA-AACTAC----ATAATAATTTGTATTTTTT-A-CTTCTGATTTTGTTAAACTTTTACAATGAAATAAAA
gi|102974                     :                               AACTAAA-TTTACAAAAGAACCTGTAACGT-TTGCAT-CTTAAT--TT-ACAAATATG-A------A-AATGTAATATCAT-------A-------AATGTTATATAATACTAT----ATAATAATTTGT-ATTTTT-A-CATCTGTTTTTGTTAAACTATTTCAATAACATAAAA
gi|102975                     :                                     A-TTCACATAAAGACTTGAAAAGT-TTGC-C-CTTAAT--TTTTCAAATGTG-A------A-AATGT-------T-------G-------AATTTTGTTTA-TATTGT----ATCATAATGTGT-TTCATT-A-CATCTGATATTGTAAAACTGTTACAATGAAATAAAA
gi|102976                     :                                                     TGAAAAGT-TCGT-C-TTTG-T--TTTACAAATATG-ACAACGCA-A-TAC-------C-------A-------GAATTTGTAT----TCAT----ATCAT---------CCTAG-G-CATTTGATACTGTTAAACTGTTACAATGAA
gi|102977                     :                                                         AAAT-TTGC-C-CTTAAT--TTTACAAATATG-A------A-AATGT-------T-------A-------AATTTTATATA-TACTAT----ATCATAATTTGC-ATCTTT-A-CATCTGATATTGTTAAACTGTTACAATGAAATAAAAcaatgctataaaaa
gi|102978                     :                                                          AGT-TTGC-C-ATTAAT--TTTACAAATGTG-A------A-AACGT-------T-------G-------AATTTTGTATA-TATTAT----ATCATAATGTGC-TTCTTT-A-CATCTGATATTGTTAAACGGTTACAATGAAACAA
gi|102980                     :                                                                                                                                         A-TATTATCTACATCATAATATGC-ATTTTT-AACATCTAATTTTGTTTAACTGTTACAATTAAATAAAAtaaa
gi|102979                     :                                                                                                                                              TAT----TTCATCATATGCATGATTT-G-CATGT--TATTGTTAAATTGTTACAATGAAATAAAA





Alignments
lowQualScore                  :                                                                                              33333333333333333333333                                                                                          
lowQualScore                  :             0  4 777          3   3  0  3                 2    2 7      33                   22222222222222222222222           2      4444        1   77  2    2              2                7777777    2   
lowQualScore                  :             .  . ...          .   .  .  .                 .    . .      ..                   .......................           .      ....        .   ..  .    .              .                .......    .   
lowQualScore                  :             9  4 888          3   1  7  1                 5    5 5      44                   44444444444444444444444           2      7777        8   66  2    2              2                2222222    5   
consensus                     : TATATATATAAAGAA-T---GGGAGTTAAC-AAA-TTCAC-TAAAGGACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTGAAAATGT-------T-------G-------AATTTTGTATA-TATTAT----ATCATAATNTGC-TTC-TTTA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
Reference ( family-846 )      : TATATATATAAAGAA-T---GGGAGTTAAC-AAA-TTCAC-TAAAGGACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTGAAAATGT-------T-------G-------AATTTTGTATA-TATTAT----ATCATAATNTGC-TTC-TTTA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102963                     : TATACATATAAAGAA-T---GGGAGTTAAC-AAA-TTCAC-TAAAAGACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTG-AAATGT-------T-------G-------AATTTTGTACA-TATTAT----ATCATAATGTGC-TTC-TTTA-CATCTGATATTGCT-AAACTGTTACAATGAA-------ATAA-AGA
gi|102964                     : TATATATATAAAGAA-T---GGGAGTTAAC-AAA-TTCAC-TTAAAGACTTGGAAAGT-TTGC-T-CTTAAT--TTTACAAAGGTGAAAATGT-------T-------G-------AATTTTGTACA-TATTAT----AACATAATGTGC-TTC-TTTA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102965                     : TATATATATAAAGAA-T---GGGAGTTAAC-AAA-CTCAC-TAAAAGACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTGAAAATGT-------T-------G-------AAATCTGCATA-TATTAT----ATTATAATGTGT-TTC-TTTA-CATCTGGTATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102966                     : TATATATATAAAAAA-T---AGGAGATAAC-AAA-TTCAC-TAAAATACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTGAAAATGT-------T-------G-------AGTTTTGTACA-TATTAT----ATTATAATGTGC-TTC-TTTA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102967                     : TATATATATAAAGAA-T---GGGAGTTAAC-AAA-TTCAT-TATATGACTTGGAAAGT-TTAC-C-TTTAAT--GTTACAAATGTGAACATGT-------T-------G-------AATTTTGTATA-TATTAC----ATCATAATGTGC-TTC-TTTA-CATCTGATATTGTT-AAATTG---CAAAGAA-------A
gi|102968                     : TATATATATATAAGA-T---GGGAGTTCAT-AAA-TTTAC-TAAAGG-TTTGGAAAGT-TTGT-C-CATAGT--TTCACAAATATGAAAATGT-------T-------A-------AATTTTGTATA-TACTAT----ACCATCATTTGC-ATC-TTAA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102969                     : TAAATAAATAAATAA-TTTTGACAGT--AC-AAAATTAAC-AAAAGGACTTGAAAAGT-TTGC-C-CTTAAT--TTTACATATATGAAAATGT-------T-------A-------AA--------------AT----ATCAGAATTTGC-TTC-TTTA-CATCTGATATTGCT-AAACTGTTACAATGAA-------AAAA-AAA
gi|102970                     :    ATATAAAAATAC-T---CGGCGTTGAT-AAA-TTAAC-TGGAGGATCTGAAAAGTTTTGC-C-CTTA----TTTAAAAA----AAGATGT-------TATATCAGA-------AATTATTTTTA-TATTAT----ATTATCATTTG-----------TATC-----TTGTTAAAACTGTTACAATGAA-------ATA
gi|102971                     :        ACAAAAAACT---CAGAGTTAAT-AAA-TTTAC-TAAAGAACCTGGAAAGT-TTGC-CTCTTAA---TTTACGAACATGTAAATGT-------TATATCAGA-------AATTTTGAACA-TACTAC----ATCATAATTTGTATTT-TTTA-CATCTGATTTTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102972                     :                       GATTTAAT-AAA-TTTAC-TAAAGAACCTGGAAACT-TTGC-CTCTTAAT--TT-ACAAATATGAGAATGT-------T----------------ATATCAGAAA-TACTAC----ATCATAATTTGC-ATCTTTTA-CATCTGATTTTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102973                     :                            AAC-AAA-----C-TAAAAGAACTGGAAAGT-TTGC-CTCTTATTAATTTACAAATATGAAAATGT-------T-------ATATCAGAAATTTTGTATA-AACTAC----ATAATAATTTGTATTT-TTTA-CTTCTGATTTTGTT-AAACTTTTACAATGAA-------ATAA-AAA
gi|102974                     :                            AACTAAA-TTTAC-AAAAGAACCTGTAACGT-TTGCAT-CTTAAT--TT-ACAAATATGAAAATGTAATATCAT-------A-------AATGTTATATAATACTAT----ATAATAATTTGT-ATT-TTTA-CATCTGTTTTTGTT-AAACTATTTCAATAAC-------ATAA-AAA
gi|102975                     :                                  A-TTCACATAAAG-ACTTGAAAAGT-TTGC-C-CTTAAT--TTTTCAAATGTGAAAATGT-------T-------G-------AATTTTGTTTA-TATTGT----ATCATAATGTGT-TTC-ATTA-CATCTGATATTGTA-AAACTGTTACAATGAA-------ATAA-AAA
gi|102976                     :                                                   TGAAAAGT-TCGT-C-TTTG-T--TTTACAAATATGACAACGCAA-----TACCA---G-------AATTT-GTAT----TCAT----ATCAT---------CC-TAGG-CATTTGATACTGTT-AAACTGTTACAATGAACAATGCTATAA-AAA
gi|102977                     :                                                       AAAT-TTGC-C-CTTAAT--TTTACAAATATGAAAATGT-------T-------A-------AATTTTATATA-TACTAT----ATCATAATTTGC-ATC-TTTA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102978                     :                                                        AGT-TTGC-C-ATTAAT--TTTACAAATGTGAAAACGT-------T-------G-------AATTTTGTATA-TATTAT----ATCATAATGTGC-TTC-TTTA-CATCTGATATTGTT-AAACGGTTACAATGAA-------ACAATAAA
gi|102979                     :                                                                                                                            TGTA-TATT-------TCATCATATGCATGA-TTTG-CATGT--TATTGTT-AAATTGTTACAATGAA-------ATAA-AAA
gi|102980                     :                                                                                                                               A-TATTATCTACATCATAATATGC-ATT-TTTAACATCTAATTTTGTT-TAACTGTTACAATTAA-------ATAA-AAA





Alignments
lowQualScore                  :                                                                                              33333333333333333333333                                                                                          
lowQualScore                  :             0  4 777          3   3  0  3                 2    2 7      33                   22222222222222222222222           2      4444        1   77  2    2              2                7777777    2   
lowQualScore                  :             .  . ...          .   .  .  .                 .    . .      ..                   .......................           .      ....        .   ..  .    .              .                .......    .   
lowQualScore                  :             9  4 888          3   1  7  1                 5    5 5      44                   44444444444444444444444           2      7777        8   66  2    2              2                2222222    5   
consensus                     : TATATATATAAAGAA-T---GGGAGTTAAC-AAA-TTCAC-TAAAGGACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTGAAAATGT-------T-------G-------AATTTTGTATA-TATTAT----ATCATAATNTGC-TTC-TTTA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
Reference ( family-846 )      : TATATATATAAAGAA-T---GGGAGTTAAC-AAA-TTCAC-TAAAGGACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTGAAAATGT-------T-------G-------AATTTTGTATA-TATTAT----ATCATAATNTGC-TTC-TTTA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102963                     : TATACATATAAAGAA-T---GGGAGTTAAC-AAA-TTCAC-TAAAAGACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTG-AAATGT-------T-------G-------AATTTTGTACA-TATTAT----ATCATAATGTGC-TTC-TTTA-CATCTGATATTGCT-AAACTGTTACAATGAA-------ATAA-AGA
gi|102964                     : TATATATATAAAGAA-T---GGGAGTTAAC-AAA-TTCAC-TTAAAGACTTGGAAAGT-TTGC-T-CTTAAT--TTTACAAAGGTGAAAATGT-------T-------G-------AATTTTGTACA-TATTAT----AACATAATGTGC-TTC-TTTA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102965                     : TATATATATAAAGAA-T---GGGAGTTAAC-AAA-CTCAC-TAAAAGACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTGAAAATGT-------T-------G-------AAATCTGCATA-TATTAT----ATTATAATGTGT-TTC-TTTA-CATCTGGTATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102966                     : TATATATATAAAAAA-T---AGGAGATAAC-AAA-TTCAC-TAAAATACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTGAAAATGT-------T-------G-------AGTTTTGTACA-TATTAT----ATTATAATGTGC-TTC-TTTA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102967                     : TATATATATAAAGAA-T---GGGAGTTAAC-AAA-TTCAT-TATATGACTTGGAAAGT-TTAC-C-TTTAAT--GTTACAAATGTGAACATGT-------T-------G-------AATTTTGTATA-TATTAC----ATCATAATGTGC-TTC-TTTA-CATCTGATATTGTT-AAATTG---CAAAGAA-------A
gi|102968                     : TATATATATATAAGA-T---GGGAGTTCAT-AAA-TTTAC-TAAAGG-TTTGGAAAGT-TTGT-C-CATAGT--TTCACAAATATGAAAATGT-------T-------A-------AATTTTGTATA-TACTAT----ACCATCATTTGC-ATC-TTAA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102969                     : TAAATAAATAAATAA-TTTTGACAGT--AC-AAAATTAAC-AAAAGGACTTGAAAAGT-TTGC-C-CTTAAT--TTTACATATATGAAAATGT-------T-------A-------AA--------------AT----ATCAGAATTTGC-TTC-TTTA-CATCTGATATTGCT-AAACTGTTACAATGAA-------AAAA-AAA
gi|102970                     :    ATATAAAAATAC-T---CGGCGTTGAT-AAA-TTAAC-TGGAGGATCTGAAAAGTTTTGC-C-CTTA----TTTAAAAA----AAGATGT-------TATATCAGA-------AATTATTTTTA-TATTAT----ATTATCATTTG-----------TATC-----TTGTTAAAACTGTTACAATGAA-------ATA
gi|102971                     :        ACAAAAAACT---CAGAGTTAAT-AAA-TTTAC-TAAAGAACCTGGAAAGT-TTGC-CTCTTAA---TTTACGAACATGTAAATGT-------TATATCAGA-------AATTTTGAACA-TACTAC----ATCATAATTTGTATTT-TTTA-CATCTGATTTTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102972                     :                       GATTTAAT-AAA-TTTAC-TAAAGAACCTGGAAACT-TTGC-CTCTTAAT--TT-ACAAATATGAGAATGT-------T----------------ATATCAGAAA-TACTAC----ATCATAATTTGC-ATCTTTTA-CATCTGATTTTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102973                     :                            AAC-AAA-----C-TAAAAGAACTGGAAAGT-TTGC-CTCTTATTAATTTACAAATATGAAAATGT-------T-------ATATCAGAAATTTTGTATA-AACTAC----ATAATAATTTGTATTT-TTTA-CTTCTGATTTTGTT-AAACTTTTACAATGAA-------ATAA-AAA
gi|102974                     :                            AACTAAA-TTTAC-AAAAGAACCTGTAACGT-TTGCAT-CTTAAT--TT-ACAAATATGAAAATGTAATATCAT-------A-------AATGTTATATAATACTAT----ATAATAATTTGT-ATT-TTTA-CATCTGTTTTTGTT-AAACTATTTCAATAAC-------ATAA-AAA
gi|102975                     :                                  A-TTCACATAAAG-ACTTGAAAAGT-TTGC-C-CTTAAT--TTTTCAAATGTGAAAATGT-------T-------G-------AATTTTGTTTA-TATTGT----ATCATAATGTGT-TTC-ATTA-CATCTGATATTGTA-AAACTGTTACAATGAA-------ATAA-AAA
gi|102976                     :                                                   TGAAAAGT-TCGT-C-TTTG-T--TTTACAAATATGACAACGCAA-----TACCA---G-------AATTT-GTAT----TCAT----ATCAT---------CC-TAGG-CATTTGATACTGTT-AAACTGTTACAATGAACAATGCTATAA-AAA
gi|102977                     :                                                       AAAT-TTGC-C-CTTAAT--TTTACAAATATGAAAATGT-------T-------A-------AATTTTATATA-TACTAT----ATCATAATTTGC-ATC-TTTA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102978                     :                                                        AGT-TTGC-C-ATTAAT--TTTACAAATGTGAAAACGT-------T-------G-------AATTTTGTATA-TATTAT----ATCATAATGTGC-TTC-TTTA-CATCTGATATTGTT-AAACGGTTACAATGAA-------ACAATAAA
gi|102979                     :                                                                                                                            TGTA-TATT-------TCATCATATGCATGA-TTTG-CATGT--TATTGTT-AAATTGTTACAATGAA-------ATAA-AAA
gi|102980                     :                                                                                                                               A-TATTATCTACATCATAATATGC-ATT-TTTAACATCTAATTTTGTT-TAACTGTTACAATTAA-------ATAA-AAA


blockSeqs                     :                C TTT          T   A     A                 T    A T      AA                   TATATCAGA                         A      CTAC        G   AT  T    A              A                CAATGCT    T
blockSeqs                     :                . .            .   .     .                 .    . T      .                    TATATCAGA                         .      .           G   AT  .    .              .                .          .
blockSeqs                     :                . .            .   .     .                 .    . T      .                    TATATCAGA                         .      .           G   AT  .    .              .                .          .
blockSeqs                     :                . .            .   .     .                 .    . .      .                    AATATCATA                         .      .           G   T   .    .              .                .          .
blockSeqs                     :                . .            .   .     .                 .    . .      .                    AATACCAG                          .      .           T   T   .    .              .                .          .
blockSeqs                     :                . .            .   .     .                 .    . .      .                    TG                                .      .           T   T   .    .              .                .          .
blockSeqs                     :                . .            .   .     .                 .    . .      .                    TG                                .      .           T   T   .    .              .                .          .
blockSeqs                     :                . .            .   .     .                 .    . .      .                    TG                                .      .           T   A   .    .              .                .          .
blockSeqs                     :                               .   .     .                 .    . .      .                    TG                                .      .           T   T   .    .              .                .          .
blockSeqs                     :                               .   .     .                 .    . .      .                    TA                                .      .           T   A   .    .              .                .          .
blockSeqs                     :                               .   .     .                 .    . .      .                    TA                                .      .           T   A   .    .              .                .          .
blockSeqs                     :                                   .     .                 .    . .      .                    TG                                .      .           G   T   .    .              .                .          .
blockSeqs                     :                                                           .    . .      .                    TA                                .      .           T   A   .    .              .                .          .
blockSeqs                     :                                                           .    . .      .                    TG                                .      .           G   T   .    .              .                .          .
blockSeqs                     :                                                           .    . .      .                    T                                 .      .           A   A   .    .              .                .          .
blockSeqs                     :                                                                                                                                .      .           A   .   .    .              .                .           
blockSeqs                     :                                                                                                                                .      .           .   .   .    .              .                .           


blockSeqCons                  : 
originalCons                  : TATATATATAAAGAA-T---GGGAGTTAAC-AAA-TTCAC-TAAAGGACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTGAAAATGT-------T-------G-------AATTTTGTATA-TATTAT----ATCATAATNTGC-TTC-TTTA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
finalCons                     : TATATATATAAAGAA-T---GGGAGTTAAC-AAA-TTCAC-TAAAGGACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTGAAAATGT-------T-------G-------AATTTTGTATA-TATTAT----ATCATAATNTGC-TTC-TTTA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA





Alignments
lowQualScore                  :                                                                                              33333333333333333333333                                                                                          
lowQualScore                  :             0  4 777          3   3  0  3                 2    2 7      33                   22222222222222222222222           2      4444        1   77  2    2              2                7777777    2   
lowQualScore                  :             .  . ...          .   .  .  .                 .    . .      ..                   .......................           .      ....        .   ..  .    .              .                .......    .   
lowQualScore                  :             9  4 888          3   1  7  1                 5    5 5      44                   44444444444444444444444           2      7777        8   66  2    2              2                2222222    5   
consensus                     : TATATATATAAAGAA-T---GGGAGTTAAC-AAA-TTCAC-TAAAGGACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTGAAAATGT-------T-------G-------AATTTTGTATA-TATTAT----ATCATAATNTGC-TTC-TTTA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
Reference ( family-846 )      : TATATATATAAAGAA-T---GGGAGTTAAC-AAA-TTCAC-TAAAGGACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTGAAAATGT-------T-------G-------AATTTTGTATA-TATTAT----ATCATAATNTGC-TTC-TTTA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102963                     : TATACATATAAAGAA-T---GGGAGTTAAC-AAA-TTCAC-TAAAAGACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTG-AAATGT-------T-------G-------AATTTTGTACA-TATTAT----ATCATAATGTGC-TTC-TTTA-CATCTGATATTGCT-AAACTGTTACAATGAA-------ATAA-AGA
gi|102964                     : TATATATATAAAGAA-T---GGGAGTTAAC-AAA-TTCAC-TTAAAGACTTGGAAAGT-TTGC-T-CTTAAT--TTTACAAAGGTGAAAATGT-------T-------G-------AATTTTGTACA-TATTAT----AACATAATGTGC-TTC-TTTA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102965                     : TATATATATAAAGAA-T---GGGAGTTAAC-AAA-CTCAC-TAAAAGACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTGAAAATGT-------T-------G-------AAATCTGCATA-TATTAT----ATTATAATGTGT-TTC-TTTA-CATCTGGTATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102966                     : TATATATATAAAAAA-T---AGGAGATAAC-AAA-TTCAC-TAAAATACTTGGAAAGT-TTGC-C-CTTAAT--TTTACAAATGTGAAAATGT-------T-------G-------AGTTTTGTACA-TATTAT----ATTATAATGTGC-TTC-TTTA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102967                     : TATATATATAAAGAA-T---GGGAGTTAAC-AAA-TTCAT-TATATGACTTGGAAAGT-TTAC-C-TTTAAT--GTTACAAATGTGAACATGT-------T-------G-------AATTTTGTATA-TATTAC----ATCATAATGTGC-TTC-TTTA-CATCTGATATTGTT-AAATTG---CAAAGAA-------A
gi|102968                     : TATATATATATAAGA-T---GGGAGTTCAT-AAA-TTTAC-TAAAGG-TTTGGAAAGT-TTGT-C-CATAGT--TTCACAAATATGAAAATGT-------T-------A-------AATTTTGTATA-TACTAT----ACCATCATTTGC-ATC-TTAA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102969                     : TAAATAAATAAATAA-TTTTGACAGT--AC-AAAATTAAC-AAAAGGACTTGAAAAGT-TTGC-C-CTTAAT--TTTACATATATGAAAATGT-------T-------A-------AA--------------AT----ATCAGAATTTGC-TTC-TTTA-CATCTGATATTGCT-AAACTGTTACAATGAA-------AAAA-AAA
gi|102970                     :    ATATAAAAATAC-T---CGGCGTTGAT-AAA-TTAAC-TGGAGGATCTGAAAAGTTTTGC-C-CTTA----TTTAAAAA----AAGATGT-------TATATCAGA-------AATTATTTTTA-TATTAT----ATTATCATTTG-----------TATC-----TTGTTAAAACTGTTACAATGAA-------ATA
gi|102971                     :        ACAAAAAACT---CAGAGTTAAT-AAA-TTTAC-TAAAGAACCTGGAAAGT-TTGC-CTCTTAA---TTTACGAACATGTAAATGT-------TATATCAGA-------AATTTTGAACA-TACTAC----ATCATAATTTGTATTT-TTTA-CATCTGATTTTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102972                     :                       GATTTAAT-AAA-TTTAC-TAAAGAACCTGGAAACT-TTGC-CTCTTAAT--TT-ACAAATATGAGAATGT-------T----------------ATATCAGAAA-TACTAC----ATCATAATTTGC-ATCTTTTA-CATCTGATTTTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102973                     :                            AAC-AAA-----C-TAAAAGAACTGGAAAGT-TTGC-CTCTTATTAATTTACAAATATGAAAATGT-------T-------ATATCAGAAATTTTGTATA-AACTAC----ATAATAATTTGTATTT-TTTA-CTTCTGATTTTGTT-AAACTTTTACAATGAA-------ATAA-AAA
gi|102974                     :                            AACTAAA-TTTAC-AAAAGAACCTGTAACGT-TTGCAT-CTTAAT--TT-ACAAATATGAAAATGTAATATCAT-------A-------AATGTTATATAATACTAT----ATAATAATTTGT-ATT-TTTA-CATCTGTTTTTGTT-AAACTATTTCAATAAC-------ATAA-AAA
gi|102975                     :                                  A-TTCACATAAAG-ACTTGAAAAGT-TTGC-C-CTTAAT--TTTTCAAATGTGAAAATGT-------T-------G-------AATTTTGTTTA-TATTGT----ATCATAATGTGT-TTC-ATTA-CATCTGATATTGTA-AAACTGTTACAATGAA-------ATAA-AAA
gi|102976                     :                                                   TGAAAAGT-TCGT-C-TTTG-T--TTTACAAATATGACAACGCAA-----TACCA---G-------AATTT-GTAT----TCAT----ATCAT---------CC-TAGG-CATTTGATACTGTT-AAACTGTTACAATGAACAATGCTATAA-AAA
gi|102977                     :                                                       AAAT-TTGC-C-CTTAAT--TTTACAAATATGAAAATGT-------T-------A-------AATTTTATATA-TACTAT----ATCATAATTTGC-ATC-TTTA-CATCTGATATTGTT-AAACTGTTACAATGAA-------ATAA-AAA
gi|102978                     :                                                        AGT-TTGC-C-ATTAAT--TTTACAAATGTGAAAACGT-------T-------G-------AATTTTGTATA-TATTAT----ATCATAATGTGC-TTC-TTTA-CATCTGATATTGTT-AAACGGTTACAATGAA-------ACAATAAA
gi|102979                     :                                                                                                                            TGTA-TATT-------TCATCATATGCATGA-TTTG-CATGT--TATTGTT-AAATTGTTACAATGAA-------ATAA-AAA
gi|102980                     :                                                                                                                               A-TATTATCTACATCATAATATGC-ATT-TTTAACATCTAATTTTGTT-TAACTGTTACAATTAA-------ATAA-AAA