lowQualScore : 111 11 11111 1111111111 111111 2222222222 11111111 1111111 3333333333333 11111111 1111111111 111 11111111 222222222 2222 1111111 11 111111 111111111 3333333333 11 111 3333333333333333333333 222222222222222222 222222222 111 111 1111 11 111 11 1 2222 222222222 111 111111 1
lowQualScore : 0 1 2 1 333 2 99 44 00000 777 4 1 4 777 7777777777 0 555555 4 55 4 7777777777 88888888 2 66 77777777 88 2 77 6666666 44 3 1 4 9999999999999 555 33333333 9999999999 4 1 66 3 0 4 55 888 66666666 444 777 000000000 4 777 5555 0 6666666 0 2 1 1 1 8 44 2 111111 999 99999 333333333 8888 5 66 0000000000 8 1 11 44 333 4 111 4 9999999999999999999999 2 1 0 4 3 55 4444 555 333 2 3 777 77777 0 999999999999999999 6 3 9 5 555 5 6666 44444 000000000 2 444 44 111 111 1 3 7 0000 00 1 6 333 9 3 4 00 44 555 555 3 8 55 4 5 4 2 1 2222 222222222 777 3 4 7 88888 1 4444 55 4 222222 55 6 2 7 99 8
lowQualScore : . . . . ... . .. .. ..... ... . . . ... .......... . ...... . .. . .......... ........ . .. ........ .. . .. ....... .. . . . ............. ... ........ .......... . . .. . . . .. ... ........ ... ... ......... . ... .... . ....... . . . . . . .. . ...... ... ..... ......... .... . .. .......... . . .. .. ... . ... . ...................... . . . . . .. .... ... ... . . ... ..... . .................. . . . . ... . .... ..... ......... . ... .. ... ... . . . .... .. . . ... . . . .. .. ... ... . . .. . . . . . .... ......... ... . . . ..... . .... .. . ...... .. . . . .. .
lowQualScore : 7 0 5 0 222 5 66 66 00000 000 0 6 0 000 5555555555 9 222222 0 55 0 0000000000 66666666 3 11 88888888 55 3 00 1111111 77 1 2 0 2222222222222 888 77777777 4444444444 0 4 00 1 9 6 00 666 22222222 444 000 999999999 0 000 5555 7 8888888 5 6 6 8 4 9 77 6 666666 555 11111 444444444 4444 5 11 3333333333 9 7 88 66 666 0 666 0 0000000000000000000000 7 0 2 3 3 33 6666 555 555 1 1 555 00000 5 333333333333333333 7 6 5 4 444 0 5555 44444 666666666 5 333 22 555 333 2 1 5 1111 66 4 0 444 2 1 0 88 22 444 444 1 0 11 2 1 0 2 5 1111 888888888 888 6 3 2 00000 3 7777 55 0 333333 55 7 7 2 22 8
consensus : CAAAGTATTGTTAATCTCCAATGTGCT--NTGGTCATCCTGTT-ATTAGTTT-----TG---A-TGTCGG-GAGAT--GTT---GA-GACAAATCCCGGTCC--CGACTTTAC-GG--A-TA---CT---GCGAA-CATACTAGGTGCTATTTCAATT--A-TNCATTTAAATATACGGAGC-ATTATC-C---A-CAAACTNGATTNTATT---------NNCCAAA---A-----C--TTT----AC--T-GATNTCGATATAATNTGTTTTACTGAAACTCATCTTAA--CGACNTGATA-CC-CTCTGA-C-GAT---TTAG---TT---A-TTGATA---ACTTTGACGGATGTA---TC--TACAGAGAAGATNGTACTNCTCATTC-GGGAGG----T-CTTTTAACTTATGTTT-----CAA--AGACA-ATTATGTC-G--AAAAG--AC--GTACG--GATCTC-GAAAGCACNNTAGTCGATGCNATATGGGTAG-AGGTTAATT-AC-------AAA-TCGTC---TTCCTTTTTACTTTGTAATGTGTATCGTCCTCCAAATACACCNGT-TTNTTTTTGGGAA-A--ATTTT--AATATTTCTATCGA-ACGTGC----TCTCGAT--A---T-C-AAATTCNAATATTGTTATCGTCGGCGATNTAAACGAAG---ATCNA----TTG--A--GCA--NA-AAANATTGC-CAC-TTACGNAACGTTAT-NNTCA-TNAATAACN---TGACNAATGTNAT-CGACG-AA-CCGACACGAGCGACAG--AT---A---C-CTCANCAAC-CTTACTTGACCCNATTATCATATCCGAC-NATATAC--------TACC--TTTA-ANCTCTGACGTAAT--AGACAT-TGATA--GAC-G-AG-TNAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
Reference ( gi|13319 ) : CAAAGTATTGTCAATCTCCAATGTGCT--TTGGTCATCCTGTA-ATTAGTTT-----TG---A-TGTCAG-GAGAT--GTT---GA-GACAAATCCCGGTCC--CGATTTTAC-GG--A-TA---CT---GTGAA-CGTACTAGGTGCTATTTCAATT--A-TCCTTTTAAATATAAGGAGC-ATTATC-C---A-TAAATTTGATTTTATT---------TCCCAAA---A-----C--TTT----AC--T-GATATTGACATAATGTGCTTTACTGAAACTCATCTTAA--CAACTTGGTA-CC-CTCTGA-C-GAT---TTAG---TT---A-TTGATA---ACTTTGAGGGATGTA---TC--TACAGAGAGGATTGTACTTCTCATTC-CGGAGG----T-CTTTTAGCTTATGTTT-----CAA--AGACA-ATTATGTC-G--AAAAG--AC--CTACG--GATCTC-GAAAGCACAGTAGTCCATGCAATATGGGTAG-AGATTTGTT-AC-------AAA-TCGTC---TTTCTTTTTACTTTGTAATATATATCGTTCTCCAAATACACCAGT-TTGTTTTTGGGAA-A--ATTTT--AATATTTCTATCGA-ACGTGC----TCTCGA---A---T-C-AAATTCCAATATTGCTATTGTCGGTGATCTCAACCAAG---ATTTA----TTG--A--GCA--AA-AGAGACTGC-CAT-TTACGTAACATTAT-CATCA-TAAATAACA---TGAAAAATATAAT-CGATA-AA-CCGACACGAGTGACAG--AT---A---C-CTCAGCAAC-CTTACTTGACCCTATTATCATATCCGAC-TGTATAC--------TACC--TTTA-ACCTCTGACGTAAT--AGACAT-TGATA--GAC-G-AG-TTAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTACAAACAAACATGTTC--AAAGCGAAAAATCT
gi|13320 : CAAAGTATTGTCAATCTCCAATGTACT--TCGGTCATCCTGTT-ATTAGTTT-----CG---A-TGTCAG-GAGAT--GTT---GA-GACAAATCCCGGTCC--CGACTTTAC-GG--A-TA---CT---GTGAA-CATACTAGGTGCTATTTCAATT--A-TCCATTTAAATATAAGGGGC-ATTATC-C---A-TAAATTTGATTTTATT---------TCCCAAA---A-----C--TTT----AC--T-GATATTGACATAATGTGCTTTACTGAAACTCATCTTAA--CAACTTGATA-CC-TTCTGA-C-GAT---TTAG---TT---A-TTGATA---ACATTGACGGATGTA---TC--TACAGAGAGGATTGTACTTCTCATTC-GGGAGG----T-ATTTTAACTTATGTTT-----CAA--AGACA-ATTATGTC-G--AAAAG--AC--GCACG--GATCTC-GAAAGCACAGTAGTCCTAGCAATATGGGTAG-AGGTTAGTT-AC-------AAA-TCGTC---TTTCTTTTTACTTTGTAATATATATCGTTCTCCAAATACACCAGT-TTGTTTTTGGGAA-A--ATTTT--AATATTTCTATCGA-ACGTGCTCGTTCTCGA---A---T-C-AAATTCCAATATTGTTATTGTCGGTGATCTCAACCAAG---ATTTA----TTG--A--GAA--AA-ATAAATTGC-CAC-TTACGTAACATTAT-TATCA-TAAATAACA---TGAAAAATATAAT-CAATA-AA-CCGACACGAGTGACAG--AT---A---C-CTCAG-AA----TAAT--ACCCTATTATCATATCCGAC-AGTATAC--------TACC--TTTA-ATTTCTGACGTAAT--AGACAT-TGATA--AAC-G-AT-AAAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTACAAACGAACATGTTC--AAAGCGAAAAGTCT
gi|13321 : CAAAGTATTGCTAATATCCACTGTGCT--ATGGTCATCATGTT-ATTAGTCT-----TG---A-TGTCAG-GAGAA--GTT---GA-GACAAATCTCGGTCT--CGACTTTAC-GG--A-TA---CT---TCGAA-CATACTAGGTGCAATTTCAATT--A-TCCATTTAAACATACGGAGC-ATTATC-A---A-TAAATATGATGTTATT---------GCCTAAA---A-----C--CTT----AC--T-GATATTGACATAATGTGTTTTACTGAAACTCATATCAA--CAATTTGGTA-CC-TTCTGG-C-GAT---TTAG---TT---A-TTAATA---ACTTTGACGGATGTA---TC--TATAGAGAAGATTGTACTTCTCATTC-GGGAGG----T-CTTTTAACTTACGCTT-----TAA--AGACA-ATTATGTC-A--AAAAG--AC--GCACG--GATCTC-GAAAGCACTATAGTTCATGTAATATGGGTTTCAGATTTGTT-AC-------ATA-TCGTG---TTTCTTTTAACTTCGTAATGTAAATCGTTCTACAAATACACAGGT-TTGTTTTTGGGAA-A--ATTTA--AATATTTCTATCGA-ACGTGC----TTTCGA---A---T-C-TAATTCAAATATTGTTATTGTTGGTGATCTAAACAAAG---ATTAA----TTG--A--GCA--CA-AGAGACTGC-CAA-TTACGTAACATTAT-CATCA-TAAATAACA---TGACAAATGTTAC-CGACA-AA-CCGACACGAGAGACAG--AT---A---C-CTCAGCAAT-CTTACTTGATCCTATTATCATATCCGAC-AGTATAC--------TACT--TTTA-ACCTCTGACGTAAT--ATACAT-TGATA--GAA-G-AG-TTAACGACCACAAAGC--TACACGCTTAACAATAAAGTTTCAC-AATTTCCAACAAATATGTTC--AAAGCGAAAAGTCT
gi|13322 : CAAAGTATTGTTTATATCCACTGTGTT--ATGGTCATCCTGTT-TTTAGTCC-----TG---A-TGTCGG-GAAA--------------CAATTACAGGTCC--CGACTTTAC-GG--A-TA---CC---TCTAA-CATATTAGATGCTAT------------CCATTTAAATTTACGGAGTTATTATC-C---A-TAAATTTAATTATATT---------GTCCGAA---A-----G--TTT----AC--T-GGTATTGATATAATGTACTTCAATGAAACTCATCTTAA--CCATATGGTA-CC-TTCTGG-C-GAT---TTAG---TT---A-TTGATA---TCTATCACGGATGTA---TC--TATAGAGGAGATTTTACT-CTCATTC-GGGAGG----T-CTTTTGACTTACGTGT-----CAA--AGACA-CTTTTGTC-C--AAA-G--AC--GTACG--GATCTC-AAAAGCACTGCAGTCCATGCAATATGGGTAG-AGATTTTTTTAC-------AAA-TCGTC---TTCCTATTTACTTTTTAATGTATATCGTTCTCCAAATACACCAGT-TTGTTTTTGGGGA-A--AAAAT--AATATTTCTATCGT-ACGTGC----TTTCGA---A---T-C-AAATTCAAATATT---ATTGTTGGTGATCTAAACCAAG---ATGTA----TTG--A--GCA--CA-AAATTTTGC-CAT-TTGCGTAACATTAT-CGCCA-TAAAAACCA---TGACAAATGTGTT-CGACA-AA-CCGACACAAGTGACAG--GT---A---A-CTCATCAAC-CTTACTTGACCCTATTATCATATCCGA
gi|13323 : AAAGTATT-TTAAAC----ATAAGAT--TT-ACCAT--TGTA-ATTACTTTGTTAGTGCTCA-TGTCTG-GAGAT--GTA---GA-GTTAAATCCTGGACC--C---TTCCC-AGAAA-TA----------GAC-CACACT--GT-C--TTTCATTT--T-TACATTTAAACATACGTAG----TATC-CGAAA-CAAACTAGAGTATATA---------AAGCAAC---A-----T--TTT----TT--G-GACTTCGATATTATTTGTTTTACAGAATCTCAT-TTAA--CGAC-CGATA-TTACTGGGATT-GAT---TAAG--------A-CGGAT----ACTCTGAACCAT-T----TCG-TAAAGATAACACTGCA-----CACTC-TAGTGG----A-CTTCTAAGTTATATAT-----CTACTAAGC---TTATGTC-G--AAACG--A-----ATGTTAATTTTAGAATGTCCCTTTGTTGATAGTATATGGGTAG-AGGTGAACT-ACGGGCGGGAAA---G--------CTTTTTACTTTGTAATGTGTATCGTCCTCCAAATACGCCTGT-TTTATTTTGGAAC-T--ATTTC--AGTATAAGTATAGA-AAAAGC----ACTTGATCTA---TCC-AAA----AATATTGTCATCGTCGGCGACATAAATGAAG---ATCAA----TTT--A--ATA--TA-AATAATTAT-CAC-TTAAAGAATGTCAT-GCTTA-TCAATAACT---TAACTAATGTTAT-AACTG-AA-CCCACCAGAACAACGC--GT---A---C-CTCATCAACTCTTA-TTGACCCAATTATAATCTCAGAC--ACATA---------TACCAGTTTG-AATTCTGGC----------------ACA--AAC-GAAA-TAAGTGATCATCAAGC--TACA
gi|13324 : AAAGTGCTGTTAATTTA-AAT-TGTTAATTTATTATT-TGTATGTTTGTTT-----TT---A-TGCTGGCGACATAGGTT--------CTAACCCTGGTCC--TGTTAGTGC-AA--A-CAATTCT---GCAAA---TA-TAGGTGCTATATC-TTT--AGTTCATCTGAAAATACGAAGT-ATCAGT-C---A-CAAACTTAAGTTCATT---------TATGGCA---A-----T--TTT----CT--T-GACTTCAATGAAGTATGTTTTACAGAAACATATCTTGA--TGA--TAATA-TC-A-CGAA-T-GAT---TCAA---TTTC-ATTTGAAC---ATTTTAAT---TGTAAACTT--TATAGAAAAGACAGAAGTACTCACTCAGGGAGG----T--TGTTAACTT
gi|13325 : GTATTGTCAATCTCCAATGTGCT--ATGGTCATCCTGTT-ATTAGTCT-----TG---A-TGTCAG-GAGAT--GTT---GA-AACAACTCCCGGTCG--CGACTTTAC-GG--A-TA---CT---GCGAA-CATACTAGGTGCTATTTCAATT--A-TCCATATAAATATAAGGAGC-ATTATC-C---A-TAAATTTGATTTTATA---------TCCCAAA---A-----C--TTT----AC--T-GATATTGACATAATGTGCTTTACTGAAACTCATCTTAA--CAACTTGGTA-CC-TTCTGA-C-GAT---TTAG---TT---C-TTGACA---ACTTTGACGGATGTA---TT--TACAGAGAAGATTGTACTTCTCATTC-GGTAGG----T-CTTTTAACTTATGTTT-----CAA--AGACA-AGTATGTCAA--AAAAG--AC--GTACG--GATCTC-GAAAACACGGTAGTCCATGCAATATGGGTAG-AGATTTGTT-AC-------AAA-TCGTC---TTCCTTTTTACTTTATAATATATATCGTTCTCCAAATACACTATT-TTGTTTTTGGGAA-A--ATTTT--GATATTTCTATCGA-ACGTGC----TTTCGA---A---T-C-AAATTCCAATATTGTTATTGTCGGTGATCTAAACCAAG---ATTTA----TCG-----GCA--AA-ACAGACTGC-CAC-TTACGTAACATTAT-CATCA-TGAATAACA---TGAAAAATATAAT-CGATA-AG-CCGACACGAGTGATAG--AT---A---C-CTCAGCAAC-CTTACATGACCCTACTATCATATCCGAC-AATATAC--------TACC--TTTA-ACCTCTGACGTAAT--AGACAT-TGATA--GAC-G-AG-TTAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCTgccagatgatgaactttgagctcgtcgttttgaccttgaaaacgacaatattaattttatttggactaaactccgttcagttacgtcagttacgtcagcttctgttatgtgacatatatcgttttccgaatactgatgtatctttctgaaatgacttaaacattaatatagaacatgccctggatgtcaaccctaatatagttatcgttcgctatttgaaccaggtcttactgaacacaaatatcacatatctacggaatatcatgtgttttaatactcttttaaatataataataaatccgatacatatttcatatactctcatagacatattttaattacagacggactgacatcactaaatgttgacacaattgacgtagataataacagaagtgactacgaagcaatttgctcatatttaaatttgacagatttcaacaaacatgttcttaaag
gi|13326 : GTTATTATGTT-GTTAGTGC-----TC---T-TGTCTG-GGGAT--ATT---GCCGA-AAATCCAGGTC------TTTTATTAG--A-AA---AT---AAGAG-CACAC--ACTG-TATTTCTATT--C-TACATATTAATATCCGAAGT-ATTCGA-A---A-CAAGTTTAATTACAT--------------AAA---AAATAAT--TTT----AT--G-GATTTTGATATACTTTGTTTTACTGAAACTCA-CTTAA--C
gi|13327 : aatttacaatc-ACTAGTTT-----TG---A-TGTCAG-GCGAT--ATTTCCGA----AAATCCTGG-AC--CG----TAT-GA--A-AA---CTCAAATGAAATATGCAAAG-GCC-TTTCAATA--G-CTCATTTAAATATTAGGAGC-ATTCGCAC---A--AAACTAGATTACAT------------CAAGG---A-----TTATTT----GCT-T-GATTTTGATATTCTATGCTTTACAGAGACCCACCTTA
gi|13328 : ttTTA-TTA-----TA---A-TGTCCG-GTAAC--GTG---GA-ATCAAATCCCGATCC--TCCTTCTAC-GG--AGCA---TT----CGAA-TG-GCTTGTCTTTATTTCA----------TTTTAA-TATTCGCAGC-AT-ATG-A---AACAAATTAGAATTTATTAAAGATAATTTTCAAT---A-----C--TTT----------GATATT----T--TGTGTTTTACCGAAACACATCTTAC--TGAAATGGTA-----TATGA-T-GATATATTAT---AC---A-TTGATAGACATTCT----GATGTA-------TATAGGAAGGATAGCACTGCGCATTC-CGGTTG----G-CTCCTCGTTTATGTTTAATTGCAA--AGAGA------GTT-G--AAAActgacgacatcaagaacaaatctcttttactggacgttttatccggccctttgcgactggataagactgcattctcaagtggactgttgacttatgtttcaaataaattagttggtaaacgattgacatgtttagacaatccatctgttgactcaatctagacagagattaagtacacatgaaccacagtaatattatgcaatgtgtatcgaccacctaattcaaatgtttcattttgggataattttaatatttcaatagaaattgcccttgatattaataaaaatctcgttattgtcggtgacttaaatgttgacattttaaacccttatagtcaaccccttaataatattatgtttttaaataatctacgcaatgttatatccgaacctacccgaattcaaattcaacggccacattgatagatccaattattat
gi|13329 : TACTTT-----TG---AATGT-AG-GAGAC--ATA---GA-AAGCAATCCCAGGCCGACAA----AC-G---A-TA---C--------A-CAT-----GTTCTAT--CGATTTTA-TACTGT--AATATTAGAAGT-ATTAGA-A---A-TAAGATAAGTTTTATT---------GTTGAAA---A-----C--CTTTTAGACCAT-GATATT--C----TTTGTTTTACTGAAAGGCACCTTGA--TAATCAGAAA-CC-AAATGA-C-TCT---TTAATACTT---A-ATGAAA---ACTTT----GATATAT--TT--TATAGAAAAGACCGTTCTAATCAT----GGAGGGGGATACTTAT---TTATGTTT-----CAA--Aactagaaaatcctctttcagactcgatttggattgaaataaaaaatcaaaataaaactattcttatctgtatcctataccgacaaccgaatgaccctgtacagttttgggatgacttaaatattagaatcgataaggcctttgaactttcaaacagtgttattattttaggtgatataaacgaagatcaattggccgcaaataatcatcgtttgaaagacattttgttacttaataatttgaccaatgttataaatgagcccacacgtgtaacagacagaacgtcgacagtaatagaccccatcgttatttcga
gi|13330 : ttattactccTTTCATTT--T-TACATTTAAACATACGTAG----TATC-CGAAA-CAAACTAAAGTATATA---------AAGCAAC---A-----T--TTT----TT--G-GACTTCGATATTATTTGTTTTACAGAATCTTAT-TTAA--AGGCC-GATA-TTACTGGGA-TTGAT---TTAG--------A-CGGATA----CTCTG-------TA---CCATTTCGTAAAG-ATAACACTGCACACTC-TAGTGG----A-CTTCTATGTTATATAT-----CTACTAAGC---TTATGTC-G--AAACG--A-----ATGTTAATTTTAGAATGTCCCTTTGTTGATAGTATATTGGTAG-AGGTGAACT-AC-------GGA-CGGTA---AAGCTTTTTACTTTGTAATGTGTATCGTCCTCCAAATACACCTGT-TTCATTTTGG--A-A--CTTTTTCAGTATAAGTATAGA-AAAAGC----TCTTGATCTA---T-CCAAA----AATGTTGTCATCTTCGGCGACATCAATGAAG---ATCAA----TTA--A--ATA--TA-AATAATTAT-CAC-TTAAAGAATGTCAT-GCTTA-TCAATAACT---TAACTAATGTTGT-AAATG-AA-CCCACCAGAACAACGC--GT---A---C-GTCATCAACTCTTA-TTGACACAATTATAATCTCAGAC--ACATA---------TACCAGTTTG-AATTCTG--GTA-------C-T-T--TA--GA----AA-TCAGTGATCATAAAGC--TACA
gi|13331 : TCTAAATATCCGTAGC-ATAAGG-A---A-TAAGCTCGAGTATGT-------------CAAAGATA-----A--TTT----CC--TTGATTACGATGTTATCTGCTTCTCTGAAACTCAT-TTAACTCAA---GATATTT-CTC-AA-C-CAT---ATA----TTGAAA-TGAACA---ATTTTGAACAAAATA---TT--TACCGTTAAGATAATACCGCCTATT------GA----T-C--------TACGTTT-----CGA--ACTCA-CTTATCTC-A--AAACGTCAT--TTA-G--CA-CTC-GAAACAACGACAATTGATCTTATTTGGATCG-AAGTTAATT-TT-------AAA-GGGGA---ATAAATATTAGTTTGTAATGTTTATCAACCAGGAAATTCACCAGT-TTCCTTCTGGAAA-G--ACTTA--AATATATCTATTGA-AAAAGC----TTTTGA---A---T-A-TAATCCTAAAATTATCATTGTAGGAGATATTTATGAAGACTATTTAAACGTTAGTA--GCA--AA---------C-AAT-TAA---AACATT-T-TATGA-TTAACAACAGCTTTAATAATGTAAT--AACAGAA-GCAACAAGAGTAACTG--AT---AGGTC-CTC
gi|13327 : tcatgcaGATAAGACTGCA-TTCTCA-----AGTGG----A-CTGTTGACTTATGTTT-----CAA--ATA-A-ATTA-GTT-GGTAAACG--AT--TGACA--TGTTTA-GACAATCCATCTGTTGACTCAATCTAGACAG-AGATTAAGT-AC-------ACA-TGAAC---CACAGTAATATTATGCAATGTGTATCGACCACCTAATTCAAATGT-TTCATTTTGGGAT-A--ATTTT--AATATTTCAATAGA-AATTGC----CCTTGAT--A---T-T--AATAAAAATCTCGTTATTGTCGGTGA-CTTAA
gi|13332 : ttactagttttgatgtcaggcgatatttccgaaaatcctggaccgtatgaaaactcaaatgaaatatgcaaaggcctttcaatagctcatttaaatattaggagcattcgcacaaaactagattacatcaaggattatttgcttgattttgatattctatgctttacagagacccaccttactgacgacatcaagaacaaatctcttttactggacgttttatccggccctttgcgactgTTTTAATCTATGTTT-----CAA--AT-CATCTCATTTC-A--AAAAG--AAGATTA----GATTTA-GAATGTCCGTTAGTTGATTCTGTTTGTGTTG-AAATCAAGC-AC-------AAAATGGACCGATTTTTGTGTGCTTTGTA-----TACCGTTCCCCGAACACGCCTGTAGCATTTTTG--AATA--ATTTT--AAAACATGTATTGA-AAAAGC----TCTTGATTTG---T-C-AAA---AAATATAGTTTTAGTAGTCGATATTAACGAGG---ACCAA----TTA--A--ATACTAA-CAATAAT---CATCTTA-GAAATACTAT-ACTAA-TTAACAATC---TGACAAATGTCAT-T-ACAGAA-CCAACCAGAGTAACTG--AA---A---C-TACATCAAC-TCTAATAGATCCAATACTTATATCAGA--TACATA---------TA-------A-ACCTCTatgttgacattttaaacccttatagtcaaccccttaataatattatgtttttaaataatctacgcaatgttatatccgaacctacccgaattcaaattcaacggccacattgatagatccaattattat
gi|13333 : ATATGGGTAG-AGGTGAACT-ACGGGCGGGAAA---G--------CTTTTTACTTTGTAATGTGTATCGTCCTCCAAATACGCCTGT-TTCATTTTGGAAC-T--ATTTC--AGTATAAGTATAGA-AAAAGC----ACTTGATCTA---TCC-AAA----AATATTGTCATCGTCGGCGACGTAAATGAAG---ATCAA----TTT--A--ATA--TA-AATAATTAT-CAC-TTAAAGAATGTCAT-GCTTA-TCAGTAACT---TAACTAATGTTAT-AACTG-AA-CC--CACCAG-AACAAGCGT---A---C-CTCATCAACTCTTA-TTGACCCAATTATAATCTCAGAC--ACATA---------TACCAGTTTG-AATTCTG--GTACT--TTACATGTCCCA--AAC-GAAA-TAAGTGATCATAAAGC--TACAcaattctg
gi|13324 : TTCTGTTATGTGACATATATCGTTTTCCGAAT--ACTGAT-GTATCTTTCTGAA-ATGACTTA--AACATTAATATAGA-ACATGC----CCTGGAT--G---T-C--AACCCTAATATAGTTATCGTTCGCTATTTGAACCAGG---TCTTA----CTG--A--ACA--CA-A-ATATCACATAT-CTACGGAATATCATGTGTT--TTAATACTC---TTTTAAATATAAT--AATA-AATCCGATACATATTTCAT--AT---A---CTCTCA-TAGA-CATATTTTA----ATTA-CAGA-CGGAC-TG-ACAT--------CAC-----TA-AATGTTGACACAAT--TGACGT-AGATAATAACAG-A----AGTGACTACGAAGCAATTTGCTC---ATATTTAAATTTGACAGATTTC-AACAAACATGTTCTTAAAG
gi|13334 : aaagtgctgttaatttaaattgttaatttattatttgtatgtttgtttttatgctggcgacataggttctaaccctggtcctgttagtgcaaacaattctgcaaatataggtgctatatctttagttcatctgaaaatacgaagtatcagtcacaaacttaagttcatttatggcaattttcttgacttcaatgaagtatgttttacagaaacatatcttgatgataatatcacgaatgattcaatttcatttgaacattttaattgtaaactttatagaaaagacagaagtactcactcagggaggttgttaacttgccagatgatgaactttgagctcgtcgttttgaccttgaaaacgacaatattaattttatttggactaaactccgttcagttacgtcagttacgtcagcCAGT-TTATTTTTGGGAA-A--ATGTT--AATATTTCTATCGA-ACGTGC----ATTCGA---A---T-C-TAATTCCAATATTGTTATTGCCGGTGATCTAAACCAAG---ACTTA----TTG--A--GCA--AA-AGAGACTGC-CAC-TTACGTAACATTAT-CATCA-TAAATAACA---TGAAAAATATAAT-CGACA-AA-CCGACACGAGTGACAG--AT---A---C-ATCAGCAAC-CTTACTTGACCCTATTATCATATCCGAC-GGTATAC--------TACC--TTTA-ACCTCTGACGTAAT--AGACAT-TGATA--GAC-A-AG-TAAGCGACCACAAAGC--TACACTCTTAATGAAAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCAAAAATTCT
gi|13328 : TTTTGGGAT-G--ACTTA--AATATTAGAATCGATAAG-GC----CTTTGA---ACTTT-C-AAA---CAGTGTTATTATTTTAGGTGATATAAACGAAG---ATCAA----TTG--GCCGCA--AATA---ATCAT-CGT-TTGAAAGACATT-T-TGTTACTTAATAATT---TGACCAATGTTAT-AAATG-AG-CCCACACGTGTAACAG--ACAGAA---C-GTCGACAG----TAATAGACCCCATCGTTAT-TTCGA
gi|13335 : ttattataatgtccggtaacgtggaatcaaatcccgatcctccttctacggagcattcgaatggcttgtctttatttcattttaatattcgcagcatatgaaacaaattagaatttattaaagataattttcaatactttgatattttgtgttttaccgaaacacatcttactgaaatggtatatgatgatatattatacattgatagacattctgatgtatataggaaggatagcactgcgcattccggttggctcctcgtttatgtttaattgcaaagagagttgaaaaactagaaaatcctctttcagactcgatttggattgaaataaaaaatcaaaataaaactattcttatctgtatcctataccgacaaccgaatgaccctgtacagTCGTCGGCGACATAAATGAAG---ATCAA----TTA--A--ATA--TC-AATAACTAT-CAC-TTAAAGAATGTCAT-GCTTA-TCAATAACT---TAACTAATGTTATACAACAGAA-CCCACCAGAACAACAC--GT---A---C-GTCATCAACTCTTA-TTGACTCAATTATAATCTCAGACACATATAC--------CAG----TTAGAATTCTG--GTACTTTAGATGT-CC-CA--AAC-G-AAATCAGTGATCATAAAGC--TACA
gi|13336 : ATTAT-ATATCCGAC-AATATACAAATGTATTACC--TTTA-ATCTCTGACGTAAA--AGACAT-TGAAA--GAA-G-TG-TTAGTAACCACAAAGC--TACACTATTAATAATAAAGTTTCAC-GATTTCCAGCAAACATGTGC---AAGCG
Alignments
lowQualScore : 1111111111 1111111111 11111 11111 111111 222222222222222222 111111111111 11111 1111 11111111 333333333333333333333333333333 33333 1111 111111111 111111 11111 1 11 111111111111 1
lowQualScore : 5 0 2 777 77 4 1 3 5 3 555 0000000000 3 2 33 55 3 88 7777777777 3 88 2 1 2 88 1 0 1 55 1 33333 444 0 1 0 1 22222 999 7777 1 1 3 1 0 3 555 0 111111 111111111111111111 6 888888888888 3 66 11111 555 4 1 6 1 4 77 1 999999 0 77777 88 3 0000 555 9999 5 00000000 66 44 22 1 55 3 1 0 3 555 888888 0 3 888888888888888888888888888888 3 555 0 2 3 0 1 2 22 2 444 111 1 2 444 6666 2 11111 8 4444 1 0 1 0 1 1 3 6666 8888888 111111111 2 8 1 555 22 0 1 1 0 33 1 777777 2 2 5555 2 444 444 2 1 22222 2 0 2 3 1 0 77 444444444444 3 1 5 55 0 0 444 55 0 1 55 5 4 77
lowQualScore : . . . ... .. . . . . . ... .......... . . .. .. . .. .......... . .. . . . .. . . . .. . ..... ... . . . . ..... ... .... . . . . . . ... . ...... .................. . ............ . .. ..... ... . . . . . .. . ...... . ..... .. . .... ... .... . ........ .. .. .. . .. . . . . ... ...... . . .............................. . ... . . . . . . .. . ... ... . . ... .... . ..... . .... . . . . . . . .... ....... ......... . . . ... .. . . . . .. . ...... . . .... . ... ... . . ..... . . . . . . .. ............ . . . .. . . ... .. . . .. . . ..
lowQualScore : 7 7 5 999 55 0 6 6 5 6 555 7777777777 6 3 44 00 6 66 7777777777 6 66 1 3 5 77 0 7 4 77 7 55555 888 5 0 4 0 99999 000 9999 0 1 0 0 2 5 444 8 888888 888888888888888888 7 555555555555 3 77 77777 888 2 2 5 0 2 99 7 999999 1 77777 55 1 9999 888 5555 1 77777777 99 33 00 6 11 1 0 8 1 444 666666 7 1 888888888888888888888888888888 1 444 8 5 1 2 0 9 22 9 555 333 2 9 999 1111 9 66666 6 9999 9 2 0 3 1 9 1 6666 9999999 666666666 7 3 0 444 00 8 0 0 9 77 0 999999 7 1 7777 3 777 777 7 0 99999 6 1 0 2 4 7 77 999999999999 3 0 7 00 1 4 222 00 9 0 00 7 9 99
consensus : CAAAGTATTGTCAATC-TCCAATGTGCTA--TGGTCATC-CTGT-TATTAGTTTTGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGACTT--TAC-GGA--TA---CT---GCGAA-CATACTAGGTGCTATTTCAATTA-TNCATTTAAATATACGGAGC-ATTATC-C---A-C-AAACTNGATTNTATTNNCNAAAAC--TTT-AC-TGATNTCGATATNATGTGCTTTACTGAAACTCATCTTA---ACGACNT---GATA-C---C-CTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACTTTG-ACGGATGTA---TTTACAGAGAAGATNGTACTNCTCATTC-GGGAGG----T-CTTTTAACTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACG--TACGGATCTC-GAAAGC-ACNNTAGTC-GATNCNATATGGG-T---AGA----GGTTAGTT-AC-------A--AA-T--CG---T----CTTCCTTT-T---TACTTTGTAATGTATATCGTCCTCCAAAT-ACACCNGT-TTNTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGC----TCTCG-A--T--ATCNAATTCNAATATTGTTATCGTCGGCGATNTAAACGAAGATCNATTGAGCA---NAAA-----ANATT----GC---CA-CTTACGNAACG--TTATGNTCATNAATAACNTGAC-NAATGTNAT-CGAC-GAA-CCGAC----ACGAGCGACAGAT---A---C-CTCANCAAC-C---TTACTTGACCCNATTATCATATCCGACACGTATAC--------CACCTTTA-ANTTCTGACGTAA--TAGACAT-TGATA--GACG-AGTNAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
Reference ( family-843 ) : CAAAGTATTGTTAATC-TCCAATGTGCTN--TGGTCATC-CTGT-TATTAGTTTTGA-TGTCGG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGACTT--TAC-GGA--TA---CT---GCGAA-CATACTAGGTGCTATTTCAATTA-TNCATTTAAATATACGGAGC-ATTATC-C---A-C-AAACTNGATTNTATTNNCCAAAAC--TTT-AC-TGATNTCGATATAATNTGTTTTACTGAAACTCATCTTA---ACGACNT---GATA-C---C-CTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACTTTG-ACGGATGTA---TCTACAGAGAAGATNGTACTNCTCATTC-GGGAGG----T-CTTTTAACTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACG--TACGGATCTC-GAAAGC-ACNNTAGTC-GATGCNATATGGG-T---AGA----GGTTAATT-AC-------A--AA-T--CG---T----CTTCCTTT-T---TACTTTGTAATGTGTATCGTCCTCCAAAT-ACACCNGT-TTNTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGC----TCTCG-A--T--ATCAAATTCNAATATTGTTATCGTCGGCGATNTAAACGAAGATCNATTGAGCA---NAAA-----ANATT----GC---CA-CTTACGNAACG--TTATNNTCATNAATAACNTGAC-NAATGTNAT-CGAC-GAA-CCGAC----ACGAGCGACAGAT---A---C-CTCANCAAC-C---TTACTTGACCCNATTATCATATCCGAC-NATATAC--------TACCTTTA-ANCTCTGACGTAA--TAGACAT-TGATA--GACG-AGTNAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
gi|13319 : CAAAGTATTGTCAATC-TCCAATGTGCTT--TGGTCATC-CTGT-AATTAGTTTTGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGATTT--TAC-GGA--TA---CT---GTGAA-CGTACTAGGTGCTATTTCAATTA-TCCTTTTAAATATAAGGAGC-ATTATC-C---A-T-AAATTTGATTTTATTTCCCAAAAC--TTT-AC-TGATATTGACATAATGTGCTTTACTGAAACTCATCTTA---ACAACTT---GGTA-C---C-CTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACTTTG-AGGGATGTA---TCTACAGAGAGGATTGTACTTCTCATTC-CGGAGG----T-CTTTTAGCTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACC--TACGGATCTC-GAAAGC-ACAGTAGTC-CATGCAATATGGG-T---AGA----GATTTGTT-AC-------A--AA-T--CG---T----CTTTCTTT-T---TACTTTGTAATATATATCGTTCTCCAAAT-ACACCAGT-TTGTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGC----TCTCG-A-----ATCAAATTCCAATATTGCTATTGTCGGTGATCTCAACCAAGATTTATTGAGCA---AAAG-----AGACT----GC---CA-TTTACGTAACA--TTATCATCATAAATAACATGAA-AAATATAAT-CGAT-AAA-CCGAC----ACGAGTGACAGAT---A---C-CTCAGCAAC-C---TTACTTGACCCTATTATCATATCCGAC-TGTATAC--------TACCTTTA-ACCTCTGACGTAA--TAGACAT-TGATA--GACG-AGTTAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTACAAACAAACATGTTC--AAAGCGAAAAATCT
gi|13320 : CAAAGTATTGTCAATC-TCCAATGTACTT--CGGTCATC-CTGT-TATTAGTTTCGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGACTT--TAC-GGA--TA---CT---GTGAA-CATACTAGGTGCTATTTCAATTA-TCCATTTAAATATAAGGGGC-ATTATC-C---A-T-AAATTTGATTTTATTTCCCAAAAC--TTT-AC-TGATATTGACATAATGTGCTTTACTGAAACTCATCTTA---ACAACTT---GATA-C---C-TTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACATTG-ACGGATGTA---TCTACAGAGAGGATTGTACTTCTCATTC-GGGAGG----T-ATTTTAACTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACG--CACGGATCTC-GAAAGC-ACAGTAGTC-CTAGCAATATGGG-T---AGA----GGTTAGTT-AC-------A--AA-T--CG---T----CTTTCTTT-T---TACTTTGTAATATATATCGTTCTCCAAAT-ACACCAGT-TTGTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGCTCGTTCTCG-A-----ATCAAATTCCAATATTGTTATTGTCGGTGATCTCAACCAAGATTTATTGAGAA---AAAT-----AAATT----GC---CA-CTTACGTAACA--TTATTATCATAAATAACATGAA-AAATATAAT-CAAT-AAA-CCGAC----ACGAGTGACAGAT---A---C-CTCAG-AA-------TAAT--ACCCTATTATCATATCCGAC-AGTATAC--------TACCTTTA-ATTTCTGACGTAA--TAGACAT-TGATA--AACG-ATAAAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTACAAACGAACATGTTC--AAAGCGAAAAGTCT
gi|13321 : CAAAGTATTGCTAATA-TCCACTGTGCTA--TGGTCATC-ATGT-TATTAGTCTTGA-TGTCAG-GAGAA--GTT---GA-GACAAATCTC-GGTCTCGACTT--TAC-GGA--TA---CT---TCGAA-CATACTAGGTGCAATTTCAATTA-TCCATTTAAACATACGGAGC-ATTATC-A---A-T-AAATATGATGTTATTGCCTAAAAC--CTT-AC-TGATATTGACATAATGTGTTTTACTGAAACTCATATCA---ACAATTT---GGTA-C---C-TTCT-------GGC-GATTTAG---T---T---A-TTAATA-ACTTTG-ACGGATGTA---TCTATAGAGAAGATTGTACTTCTCATTC-GGGAGG----T-CTTTTAACTTACGCTT-----TAA--A-GAC-A-ATTATG---TC-A--AAAAGACG--CACGGATCTC-GAAAGC-ACTATAGTT-CATGTAATATGGG-TTTCAGA------TTTGTT-AC-------A--TA-T--CG---T----GTTTCTTT-T---AACTTCGTAATGTAAATCGTTCTACAAAT-ACACAGGT-TTGTTTTTGGGAA-AATTTA--AATATTTCTATCGA-ACGTGC----TTTCG-A-----ATCTAATTCAAATATTGTTATTGTTGGTGATCTAAACAAAGATTAATTGAGCA---CAAG-----AGACT----GC---CA-ATTACGTAACA--TTATCATCATAAATAACATGAC-AAATGTTAC-CGAC-AAA-CCGAC----ACGAGAGACAGAT---A---C-CTCAGCAAT-C---TTACTTGATCCTATTATCATATCCGAC-AGTATAC--------TACTTTTA-ACCTCTGACGTAA--TATACAT-TGATA--GAAG-AGTTAACGACCACAAAGC--TACACGCTTAACAATAAAGTTTCAC-AATTTCCAACAAATATGTTC--AAAGCGAAAAGTCT
gi|13322 : CAAAGTATTGTTTATA-TCCACTGTGTTA--TGGTCATC-CTGT-TTTTAGTCCTGA-TGTCGG-GAAA--------------CAATTACA-GGTCCCGACTT--TAC-GGA--TA---CC---TCTAA-CATATTAGATGCTAT----------CCATTTAAATTTACGGAGTTATTATC-C---A-T-AAATTTAATTATATTGTCCGAAAG--TTT-AC-TGGTATTGATATAATGTACTTCAATGAAACTCATCTTA---ACCATAT---GGTA-C---C-TTCT-------GGC-GATTTAG---T---T---A-TTGATA-TCTATC-ACGGATGTA---TCTATAGAGGAGATTTTACT-CTCATTC-GGGAGG----T-CTTTTGACTTACGTGT-----CAA--A-GAC-A-CTTTTG---TC-C--AAA-GACG--TACGGATCTC-AAAAGC-ACTGCAGTC-CATGCAATATGGG-T---AGA----GATTTTTTTAC-------A--AA-T--CG---T----CTTCCTAT-T---TACTTTTTAATGTATATCGTTCTCCAAAT-ACACCAGT-TTGTTTTTGGGGA-AAAAAT--AATATTTCTATCGT-ACGTGC----TTTCG-A-----ATCAAATTCAAATATTATT---GTTGGTGATCTAAACCAAGATGTATTGAGCA---CAAA-----ATTTT----GC---CA-TTTGCGTAACA--TTATCGCCATAAAAACCATGAC-AAATGTGTT-CGAC-AAA-CCGAC----ACAAGTGACAGGT---A---A-CTCATCAAC-C---TTACTTGACCCTATTATCATATCCGA
gi|13323 : AAAGTATT-TTAAACATAAGATTTACCA--TTGTAATTACT-T-TGTTAGTGCTCA-TGTCTG-GAGAT--GTA---GA-GTTAAATCCT-GGACCC---TT--CCC-AGAAATA----------GAC-CACACT--GT-CT--TTCATTTT-TACATTTAAACATACGTAG----TATC-CGAAA-C-AAACTAGAGTATATAAAGCAACAT--TTT-TT-GGACTTCGATATTATTTGTTTTACAGAATCTCAT-TTA---ACGACC----GATA-T---TACTGG-------GATTGATTAAG-----------A-CGGATA--CTCTG-A---AC-CA---TTT-CGTA-AAGATAACACTGCACACTC-TAGTGG----A-CTTCTAAGTTATATAT-----CTACTA-AGC----TTATG---TC-G--AAACGA-A--TGTTAATTTTAGAATGT-CCCTTTGTT-GATAGTATATGGG-T---AGA----GGTGAACT-ACGGGCGGGA--AA-----G------------CTTT-T---TACTTTGTAATGTGTATCGTCCTCCAAAT-ACGCCTGT-TTTATTTTGGAAC-TATTTC--AGTATAAGTATAGA-AAAAGC----ACTTG-A--TCTATCCAA---AAATATTGTCATCGTCGGCGACATAAATGAAGATCAATTTAATA---TAAA-----TAATT----AT---CA-CTTAAAGAATG--TCATGCTTATCAATAACTTAAC-TAATGTTAT--AACTGAA-CCCAC----CAGAACAACGCGT---A---C-CTCATCAACTC---TTA-TTGACCCAATTATAATCTCAGACACATATAC--------CA-GTTTG-AATTCTGGC----------------ACA--AACGAAATAAGTGATCATCAAGC--TACA
gi|13324 : AAAGTGCTGTTAATT-TA-AAT-TGTTAATTTATTATT--TGTATGTTTGTTTTTA-TGCTGGCGACATAGGTT--------CTAACCCT-GGTCCTG--TTAGTGC-AAA--CAATTCT---GCAAA-TATA---GGTGCTATATC-TTTAGTTCATCTGAAAATACGAAGT-ATCAGT-C---A-C-AAACTTAAGTTCATTTATGGCAAT--TTT-CT-TGACTTCAATGAAGTATGTTTTACAGAAACATATCTTG---ATGA--T---AATA-T---C-A-CG-------AAT-GATTCAA---T---TTC-ATTTGAAC-ATTTTA-AT---TGTAAACTTTATAGAAAAGACAGAAGTACTCACTCAGGGAGG----T--TGTTAACTTG----C-----CAG--ATGATGA-ACTTTGAGCTC--------GTCG--TTTTGACCTT-GAAAACGACAATA-TT-AATTTTATTTGGACT---AAACTCCGTTCAGTT-AC-------GTCAG-TTACG---T----CAGCTTCTGT---TA---TGTGACATATATCGTTTTCCGAAT-ACTGATGT-ATCTTTCTGAAAT-GACTTA--AACATTAATATAGA-ACATGC----CCTGG-A--T--GTC-AACCCTAATATAGTTATCGTTCGCTATTTGAACCAGGTCTTACTGAACA---C-AA-----ATATC----ACA--TA-TCTACGGAATA--TCATGTGTTTTAATACTCTTTT-AAATATAAT--AAT-AAATCCGAT----ACATATTTCATAT---A---CTCTCATAGAC-A----TATTTTA----ATTA-CAGA-CGGAC-TG-ACAT--------CAC---TA-AATGTTGACACAA--TTGACGT-AGATAATAAC--AG-AAGTGACTACGAAGCAATTTGCTC---ATATTTAAATTTGACAGATTTC-AACAAACATGTTCTTAAAG
gi|13325 : GTATTGTCAATC-TCCAATGTGCTA--TGGTCATC-CTGT-TATTAGTCTTGA-TGTCAG-GAGAT--GTT---GA-AACAACTCCC-GGTCGCGACTT--TAC-GGA--TA---CT---GCGAA-CATACTAGGTGCTATTTCAATTA-TCCATATAAATATAAGGAGC-ATTATC-C---A-T-AAATTTGATTTTATATCCCAAAAC--TTT-AC-TGATATTGACATAATGTGCTTTACTGAAACTCATCTTA---ACAACTT---GGTA-C---C-TTCT-------GAC-GATTTAG---T---T---C-TTGACA-ACTTTG-ACGGATGTA---TTTACAGAGAAGATTGTACTTCTCATTC-GGTAGG----T-CTTTTAACTTATGTTT-----CAA--A-GAC-A-AGTATG---TCAA--AAAAGACG--TACGGATCTC-GAAAAC-ACGGTAGTC-CATGCAATATGGG-T---AGA----GATTTGTT-AC-------A--AA-T--CG---T----CTTCCTTT-T---TACTTTATAATATATATCGTTCTCCAAAT-ACACTATT-TTGTTTTTGGGAA-AATTTT--GATATTTCTATCGA-ACGTGC----TTTCG-A-----ATCAAATTCCAATATTGTTATTGTCGGTGATCTAAACCAAGATTTATCG-GCA---AAAC-----AGACT----GC---CA-CTTACGTAACA--TTATCATCATGAATAACATGAA-AAATATAAT-CGAT-AAG-CCGAC----ACGAGTGATAGAT---A---C-CTCAGCAAC-C---TTACATGACCCTACTATCATATCCGAC-AATATAC--------TACCTTTA-ACCTCTGACGTAA--TAGACAT-TGATA--GACG-AGTTAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
gi|13326 : AATTTACAA--TCGTTATT-ATGT-TGTTAGTGCTCT-TGTCTG-GGGAT--ATT---GCCGA-AAATCCA-GGTCT----TT--TATTAGA--AA---AT---AAGAG-CACAC--ACTG-TATTTCTATTC-TACATATTAATATCCGAAGT-ATTCGA-A---A-C-AAGTTTAATTACATAAAAAATAAT--TTT-AT-GGATTTTGATATACTTTGTTTTACTGAAACTCA-CTTA---AC
gi|13327 : T-TACTAGTTTTGA-TGTCAG-GCGAT--ATTTCCGA----AAATCCT-GG-----ACCG--TAT-GAA--AA---CTCAAATGAAATATGCAAAG-GCC-TTTCAATAG-CTCATTTAAATATTAGGAGC-AT--TCGC---A-CAAAACTAGATTACAT---CAAGGATTATTT-GCTTGATTTTGATATTCTATGCTTTACAGAGACCCACCTTACTGACGACATCAAGA-A-CAAAT-CTCTTTTACTGGAC-G-TT------T---T---A-TCCGGC-CCTTTG--CGACTG-----------GATAAGACTGCA-TTCTCA-----AGTGG----A-CTGTTGACTTATGTTT-----CAA--A-TA--A-ATTA-G---TT-GGTAAACGATT--GACATGTTTA-GACAAT-CCATCTGTT-GACTCAATCTAGA-C---AGA----GATTAAGT-AC-------A--CA-T--GA---A----CCACAGTA-A---TATTATGCAATGTGTATCGACCACCTAAT-TCAAATGT-TTCATTTTGGGAT-AATTTT--AATATTTCAATAGA-AATTGC----CCTTG-A--T--ATT-AATAAAAATCTCGTTATTGTCGGTGACTTAAATG--------TTGA-CATTTTAAACCCTTATAGTCA--AC---CC-CTTA-ATAATA--TTATGTTTTTAAATAATCT-ACGCAATGTTAT-ATCC-GAA-CCTAC----CCGAATT-CAAAT----------TCAACGGC-CACATTGATAGATCCAATTATTAT
gi|13328 : T-TATTA----TAA-TGTCCG-GTAAC--GTG---GA-ATCAAATCCC-GATCCTCCTTC--TAC-GGAG-CA---TT----CGAA-TG-GCT---TG-TCTTT--ATT---TCATTTTAATATTCGCAGC-AT-ATG-A---AAC-AAATTAGAATTTATTAAAGATAAT--TTTCAA-T-ACTTTGATATTTTGTGTTTTACCGAAACACATCTTA---CTGAAAT---GGTA--------TAT-------GAT-GATATAT---TATAC---A-TTGATAGACATT---CTGATGTA---T--ATAGGAAGGATAGCACTGCGCATTC-CGGTTG----G-CTCCTCGTTTATGTTTAATTGCAA--A-GAG-A------G---TT-G--AAAAA------------CTA-GAAAAT-CCTCT-TTCAGACTCGATTTGGA-T---TGA--------AATA-AA-------A--AA-T--CAAAATAAAACT--ATTC-T---TA-TCTGTATCCTATACCGACAACCGAATGAC-CCTGT-ACAGTTTTGGGAT-GACTTA--AATATTAGAATCGATAAG-GC----CTTTG-AACT--TTCAAA---CAGTGTTATTATTTTAGGTGATATAAACGAAGATCAATTGGCCG---CAAA-----TAATC----AT---CG-TTTGAAAGACA--TTTTGTTACTTAATAATTTGAC-CAATGTTAT-AAAT-GAG-CCCAC----ACGTGTAACAGACAGAA---C-GTCGACAG-------TAATAGACCCCATCGTTAT-TTCGA
gi|13329 : TACTTTTGAATGT-AG-GAGAC--ATA---GA-AAGCAATCCCAGG--CCGACAA---AC-G-A--TA---C--------A-CAT-----GTTCTAT--CGATTT-TATACTGTAATATTAGAAGT-ATTAGA-A---A-T-AAGATAAGTTTTATTGTTGAAAACCTTTT-A---GACCATGATATTCTTTGTTTTACTGAAAGGCACCTTG---ATAATCA---GAAA-C---C-AAAT-------GAC-TCTTTAATACT---T---A-ATGAAA-ACTTTG-AT--ATAT----TTTATAGAAAAGACCGTTCTAATCAT----GGAGGGGGATACTT---ATTTATGTTT-----CAA--A-
gi|13330 : ttattactccTTTCATTTT-TACATTTAAACATACGTAG----TATC-CGAAA-C-AAACTAAAGTATATAAAGCAACAT--TTT-TT-GGACTTCGATATTATTTGTTTTACAGAATCTTAT-TTA---AAGGCC----GATA-T---TACTGG-------GATTGATTTAG-----------A-CGGATA--CTCTGTAC-----CA---TTT-CGTA-AAGATAACACTGCACACTC-TAGTGG----A-CTTCTATGTTATATAT-----CTACTA-AGC----TTATG---TC-G--AAACGA-A--TGTTAATTTTAGAATGT-CCCTTTGTT-GATAGTATATTGG-T---AGA----GGTGAACT-AC-------G--GA-C--GG---T----AAAGCTTT-T---TACTTTGTAATGTGTATCGTCCTCCAAAT-ACACCTGT-TTCATTTTGG--A-ACTTTTTCAGTATAAGTATAGA-AAAAGC----TCTTG-A--TCTATCCAA---AAATGTTGTCATCTTCGGCGACATCAATGAAGATCAATTAAATA---TAAA-----TAATT----AT---CA-CTTAAAGAATG--TCATGCTTATCAATAACTTAAC-TAATGTTGT-AAAT-GAA-CCCAC----CAGAACAACGCGT---A---C-GTCATCAACTC---TTA-TTGACACAATTATAATCTCAGACACATATAC--------CA-GTTTG-AATTCTG--GT-------AC-T-T--TA--GA---AATCAGTGATCATAAAGC--TACA
gi|13331 : TCA-TGCATCTAAATATCCGTAGC-ATAAGG-A---A-T-AAGCTCGAGTATGTCAAAGATAAT--TTC-CT-TGATTACGATGTTATCTGCTTCTCTGAAACTCAT-TTA---ACT-CAA---GATATT---T-CTC--------AAC-CATATA----T---TGAAA-TGAACA-ATTTTGAACAAA-ATA---TTTACCGTTAAGATAATACCGCCTATT------GA----T-C--------TACGTTT-----CGA--A-CTC-A-CTTATC---TC-A--AAACGTCA--TTTAGCACTC-GAAACA-ACGACAATT-GATCTTATTTGGA-T---CGA----AGTTAATT-TT-------A--AA-G--GG---G----AATAAATA-T---TAGTTTGTAATGTTTATCAACCAGGAAAT-TCACCAGT-TTCCTTCTGGAAA-GACTTA--AATATATCTATTGA-AAAAGC----TTTTGAA--T--AT--AATCCTAAAATTATCATTGTAGGAGATATTTATGAAGA-CTATTT---------AA-----ACGTTAGTAGCAAACA-ATTA--AAACATTTTATGATTAACAACAGCTTTAA-TAATGTAAT--AACAGAA-GCAAC----AAGAGTAACTGAT---AGGTC-CTC
gi|13332 : TTTTAATCTATGTTT-----CAA--A-T-C-ATCTCATT---TC-A--AAAAGAAGATTA--GATTTA-GAATGT-CCGTTAGTT-GATTCTGTTTGTG-T---TGA----AATCAAGC-AC-------A--AAAT--GG---A----CCGATTTT-TGTGTGCTTTGTA-----TACCGTTCCCCGAAC-ACGCCTGTAGCATTTTTG--AATAATTTT--AAAACATGTATTGA-AAAAGC----TCTTG-A--TTTGTCAAA---AAATATAGTTTTAGTAGTCGATATTAACGAGGACCAATTAAATA---CTAA-----CAATA----AT---CATCTTA-GAAATA--CTATACTAATTAACAATCTGAC-AAATGTCAT-T-ACAGAA-CCAAC----CAGAGTAACTGAA---A---C-TACATCAAC-T---CTAATAGATCCAATACTTATATCAGATACATATAA---------ACCTCTC-AATTCTG
gi|13333 : ATATGGG-T---AGA----GGTGAACT-ACGGGCGGGA--AA-----G------------CTTT-T---TACTTTGTAATGTGTATCGTCCTCCAAAT-ACGCCTGT-TTCATTTTGGAAC-TATTTC--AGTATAAGTATAGA-AAAAGC----ACTTG-ATCT--ATCCAA---AAATATTGTCATCGTCGGCGACGTAAATGAAGATCAATTTAATA---TAAA-----TAATT----AT---CA-CTTAAAGAATG--TCATGCTTATCAGTAACTTAAC-TAATGTTAT--AACTGAA-CCCACCAGAACAAGCG-----T---A---C-CTCATCAACTC---TTA-TTGACCCAATTATAATCTCAGACACATATAC--------CA-GTTTG-AATTCTG--GTAC--TTTACATGTCCCA--AACGAAATAAGTGATCATAAAGC--TACA
gi|13334 : CAGT-TTATTTTTGGGAA-AATGTT--AATATTTCTATCGA-ACGTGC----ATTCG-A-----ATCTAATTCCAATATTGTTATTGCCGGTGATCTAAACCAAGACTTATTGAGCA---AAAG-----AGACT----GC---CA-CTTACGTAACA--TTATCATCATAAATAACATGAA-AAATATAAT-CGAC-AAA-CCGAC----ACGAGTGACAGAT---A---C-ATCAGCAAC-C---TTACTTGACCCTATTATCATATCCGAC-GGTATAC--------TACCTTTA-ACCTCTGACGTAA--TAGACAT-TGATA--GACA-AGTAAGCGACCACAAAGC--TACACTCTTAATGAAAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCAAAAATTCT
gi|13335 : TCGTCGGCGACATAAATGAAGATCAATTAAATA---TCAA-----TAACT----AT---CA-CTTAAAGAATG--TCATGCTTATCAATAACTTAAC-TAATGTTATACAACAGAA-CCCAC----CAGAACAACACGT---A---C-GTCATCAACTC---TTA-TTGACTCAATTATAATCTCAGACACATATAC--------CA--GTTAGAATTCTG--GTACTTTAGATGT-C-CCA--AACGAAATCAGTGATCATAAAGC--TACA
gi|13336 : ATTAT-ATATCCGAC-AATATACAAATGTATTACCTTTA-ATCTCTGACGTAA--AAGACAT-TGAAA--GAAG-TGTTAGTAACCACAAAGC--TACACTATTAATAATAAAGTTTCAC-GATTTCCAGCAAACATGTGC---AAGCG
Alignments
lowQualScore : 1111111111 1111111111 11111 11111 111111 2222222222222222 111111111111 111111 1111 11111111 333333333333333333333333333333 33333 1111 111111111 111111 11111 1 11 111111111111 1
lowQualScore : 0 3 0 2 66 77 4 1 3 0 3 555 0000000000 3 2 33 55 3 88 7777777777 3 88 2 1 2 88 1 0 1 55 1 33333 444 0 1 0 1 11111 999 7777 1 1 1 2 0 3 555 0 111111 2222222222222222 3 3 888888888888 3 3 111111 555 2 1 6 1 4 77 1 999999 0 77777 88 3 0000 555 9999 5 00000000 66 44 22 1 55 1 1 0 3 555 888888 0 0 3 888888888888888888888888888888 3 555 0 3 0 1 2 22 2 2 2 444 111 1 2 444 6666 55555 3 4444 1 0 1 0 1 1 3 6666 8888888 111111111 2 8 1 555 22 0 1 1 0 33 1 777777 2 2 5555 2 444 444 2 1 22222 2 0 2 3 1 0 33 333333333333 3 1 5 55 0 0 444 55 0 1 55 5 4 77
lowQualScore : . . . . .. .. . . . . . ... .......... . . .. .. . .. .......... . .. . . . .. . . . .. . ..... ... . . . . ..... ... .... . . . . . . ... . ...... ................ . . ............ . . ...... ... . . . . . .. . ...... . ..... .. . .... ... .... . ........ .. .. .. . .. . . . . ... ...... . . . .............................. . ... . . . . . .. . . . ... ... . . ... .... ..... . .... . . . . . . . .... ....... ......... . . . ... .. . . . . .. . ...... . . .... . ... ... . . ..... . . . . . . .. ............ . . . .. . . ... .. . . .. . . ..
lowQualScore : 4 0 7 5 99 55 0 6 6 6 6 555 7777777777 6 3 44 00 6 66 7777777777 6 66 1 3 5 77 0 7 4 77 7 55555 888 5 0 4 0 22222 000 9999 0 1 0 1 2 5 444 8 888888 3333333333333333 3 3 555555555555 3 3 777777 888 1 2 5 0 2 99 7 999999 1 77777 55 1 9999 888 5555 1 77777777 99 33 00 6 11 0 0 8 1 444 666666 7 5 1 888888888888888888888888888888 1 444 8 1 2 0 9 22 4 9 9 555 333 2 9 999 1111 11111 8 9999 9 2 0 3 1 9 1 6666 9999999 666666666 7 3 0 444 11 8 0 0 9 77 0 999999 7 1 7777 3 777 777 7 0 99999 6 1 0 2 4 7 99 777777777777 3 0 7 00 1 4 222 00 9 0 00 7 9 99
consensus : CAAAGTATTGTCAATNTCCAATGTGCTA--TGGTCATC-CTGT-TATTAGTTTTGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGACTT--TAC-GGA--TA---CT---GCGAA-CATACTAGGTGCTATTTCAATTA-TNCATTTAAATATACGGAGC-ATTATC-C---A-C-AAACTNGATTNTATTNNCNAAAAC--TTT-AC-TGATNTCGATATNATGTGCTTTACTGAAACTCATCTTA---ACGACNT---GATAC---C-CTCT-------GA-C-GATTTAG---T---T---A-TTGATA-ACTTTG-A-CGGATGTA---TTTACAGAGAAGATNGTACTNCTCATTC-GGGAGG----T-CTTTTAACTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACG--TACGGATCTC-GAAAGC-ACNNTAGTC-GATNCNATATGGG-T---AGA----GGTTAGTT-AC-------A--AA-T--CG---T----CTTCCTTT-T---TACTTTGTAATGTATATCGTCCTCCAAAT-ACACCNGT-TTNTTTTTGGGAA-A-ATTTT--AATATTTCTATCGA-ACGTGC----TCTCGA--T--ATCNAATTCNAATATTGTTATCGTCGGCGATNTAAACGAAGATCNATTGAGCA---NAAA-----ANATT----GC---CA-CTTACGNAACG--TTATGNTCATNAATAACNTGAC-NAATGTNAT-CGAC-GAA-CCGAC----ACGAGCGACAGAT---A---C-CTCANCAAC-C---TTACTTGACCCNATTATCATATCCGACACGTATAC--------CACCTTTA-ANTTCTGACGTAA--TAGACAT-TGATA--GACG-AGTNAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
Reference ( family-843 ) : CAAAGTATTGTCAATCTCCAATGTGCTA--TGGTCATC-CTGT-TATTAGTTTTGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGACTT--TAC-GGA--TA---CT---GCGAA-CATACTAGGTGCTATTTCAATTA-TNCATTTAAATATACGGAGC-ATTATC-C---A-C-AAACTNGATTNTATTNNCNAAAAC--TTT-AC-TGATNTCGATATNATGTGCTTTACTGAAACTCATCTTA---ACGACNT---GATAC---C-CTCT-------GA-C-GATTTAG---T---T---A-TTGATA-ACTTTG-A-CGGATGTA---TTTACAGAGAAGATNGTACTNCTCATTC-GGGAGG----T-CTTTTAACTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACG--TACGGATCTC-GAAAGC-ACNNTAGTC-GATNCNATATGGG-T---AGA----GGTTAGTT-AC-------A--AA-T--CG---T----CTTCCTTT-T---TACTTTGTAATGTATATCGTCCTCCAAAT-ACACCNGT-TTNTTTTTGGGAA-A-ATTTT--AATATTTCTATCGA-ACGTGC----TCTCGA--T--ATCNAATTCNAATATTGTTATCGTCGGCGATNTAAACGAAGATCNATTGAGCA---NAAA-----ANATT----GC---CA-CTTACGNAACG--TTATGNTCATNAATAACNTGAC-NAATGTNAT-CGAC-GAA-CCGAC----ACGAGCGACAGAT---A---C-CTCANCAAC-C---TTACTTGACCCNATTATCATATCCGACACGTATAC--------CACCTTTA-ANTTCTGACGTAA--TAGACAT-TGATA--GACG-AGTNAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
gi|13319 : CAAAGTATTGTCAATCTCCAATGTGCTT--TGGTCATC-CTGT-AATTAGTTTTGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGATTT--TAC-GGA--TA---CT---GTGAA-CGTACTAGGTGCTATTTCAATTA-TCCTTTTAAATATAAGGAGC-ATTATC-C---A-T-AAATTTGATTTTATTTCCCAAAAC--TTT-AC-TGATATTGACATAATGTGCTTTACTGAAACTCATCTTA---ACAACTT---GGTAC---C-CTCT-------GA-C-GATTTAG---T---T---A-TTGATA-ACTTTG-A-GGGATGTA---TCTACAGAGAGGATTGTACTTCTCATTC-CGGAGG----T-CTTTTAGCTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACC--TACGGATCTC-GAAAGC-ACAGTAGTC-CATGCAATATGGG-T---AGA----GATTTGTT-AC-------A--AA-T--CG---T----CTTTCTTT-T---TACTTTGTAATATATATCGTTCTCCAAAT-ACACCAGT-TTGTTTTTGGGAA-A-ATTTT--AATATTTCTATCGA-ACGTGC----TCTCGA-----ATCAAATTCCAATATTGCTATTGTCGGTGATCTCAACCAAGATTTATTGAGCA---AAAG-----AGACT----GC---CA-TTTACGTAACA--TTATCATCATAAATAACATGAA-AAATATAAT-CGAT-AAA-CCGAC----ACGAGTGACAGAT---A---C-CTCAGCAAC-C---TTACTTGACCCTATTATCATATCCGAC-TGTATAC--------TACCTTTA-ACCTCTGACGTAA--TAGACAT-TGATA--GACG-AGTTAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTACAAACAAACATGTTC--AAAGCGAAAAATCT
gi|13320 : CAAAGTATTGTCAATCTCCAATGTACTT--CGGTCATC-CTGT-TATTAGTTTCGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGACTT--TAC-GGA--TA---CT---GTGAA-CATACTAGGTGCTATTTCAATTA-TCCATTTAAATATAAGGGGC-ATTATC-C---A-T-AAATTTGATTTTATTTCCCAAAAC--TTT-AC-TGATATTGACATAATGTGCTTTACTGAAACTCATCTTA---ACAACTT---GATAC---C-TTCT-------GA-C-GATTTAG---T---T---A-TTGATA-ACATTG-A-CGGATGTA---TCTACAGAGAGGATTGTACTTCTCATTC-GGGAGG----T-ATTTTAACTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACG--CACGGATCTC-GAAAGC-ACAGTAGTC-CTAGCAATATGGG-T---AGA----GGTTAGTT-AC-------A--AA-T--CG---T----CTTTCTTT-T---TACTTTGTAATATATATCGTTCTCCAAAT-ACACCAGT-TTGTTTTTGGGAA-A-ATTTT--AATATTTCTATCGA-ACGTGCTCGTTCTCGA-----ATCAAATTCCAATATTGTTATTGTCGGTGATCTCAACCAAGATTTATTGAGAA---AAAT-----AAATT----GC---CA-CTTACGTAACA--TTATTATCATAAATAACATGAA-AAATATAAT-CAAT-AAA-CCGAC----ACGAGTGACAGAT---A---C-CTCAG-AA-------TAAT--ACCCTATTATCATATCCGACA-GTATAC--------TACCTTTA-ATTTCTGACGTAA--TAGACAT-TGATA--AACG-ATAAAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTACAAACGAACATGTTC--AAAGCGAAAAGTCT
gi|13321 : CAAAGTATTGCTAATATCCACTGTGCTA--TGGTCATC-ATGT-TATTAGTCTTGA-TGTCAG-GAGAA--GTT---GA-GACAAATCTC-GGTCTCGACTT--TAC-GGA--TA---CT---TCGAA-CATACTAGGTGCAATTTCAATTA-TCCATTTAAACATACGGAGC-ATTATC-A---A-T-AAATATGATGTTATTGCCTAAAAC--CTT-AC-TGATATTGACATAATGTGTTTTACTGAAACTCATATCA---ACAATTT---GGTAC---C-TTCT-------GG-C-GATTTAG---T---T---A-TTAATA-ACTTTG-A-CGGATGTA---TCTATAGAGAAGATTGTACTTCTCATTC-GGGAGG----T-CTTTTAACTTACGCTT-----TAA--A-GAC-A-ATTATG---TC-A--AAAAGACG--CACGGATCTC-GAAAGC-ACTATAGTT-CATGTAATATGGG-TTTCAGA------TTTGTT-AC-------A--TA-T--CG---T----GTTTCTTT-T---AACTTCGTAATGTAAATCGTTCTACAAAT-ACACAGGT-TTGTTTTTGGGAA-A-ATTTA--AATATTTCTATCGA-ACGTGC----TTTCGA-----ATCTAATTCAAATATTGTTATTGTTGGTGATCTAAACAAAGATTAATTGAGCA---CAAG-----AGACT----GC---CA-ATTACGTAACA--TTATCATCATAAATAACATGAC-AAATGTTAC-CGAC-AAA-CCGAC----ACGAGAGACAGAT---A---C-CTCAGCAAT-C---TTACTTGATCCTATTATCATATCCGACA-GTATAC--------TACTTTTA-ACCTCTGACGTAA--TATACAT-TGATA--GAAG-AGTTAACGACCACAAAGC--TACACGCTTAACAATAAAGTTTCAC-AATTTCCAACAAATATGTTC--AAAGCGAAAAGTCT
gi|13322 : CAAAGTATTGTTTATATCCACTGTGTTA--TGGTCATC-CTGT-TTTTAGTCCTGA-TGTCGG-GAAA--------------CAATTACA-GGTCCCGACTT--TAC-GGA--TA---CC---TCTAA-CATATTAGATGCTAT----------CCATTTAAATTTACGGAGTTATTATC-C---A-T-AAATTTAATTATATTGTCCGAAAG--TTT-AC-TGGTATTGATATAATGTACTTCAATGAAACTCATCTTA---ACCATAT---GGTAC---C-TTCT-------GG-C-GATTTAG---T---T---A-TTGATA-TCTATC-A-CGGATGTA---TCTATAGAGGAGATTTTACT-CTCATTC-GGGAGG----T-CTTTTGACTTACGTGT-----CAA--A-GAC-A-CTTTTG---TC-C--AAA-GACG--TACGGATCTC-AAAAGC-ACTGCAGTC-CATGCAATATGGG-T---AGA----GATTTTTTTAC-------A--AA-T--CG---T----CTTCCTAT-T---TACTTTTTAATGTATATCGTTCTCCAAAT-ACACCAGT-TTGTTTTTGGGGA-A-AAAAT--AATATTTCTATCGT-ACGTGC----TTTCGA-----ATCAAATTCAAATATTATT---GTTGGTGATCTAAACCAAGATGTATTGAGCA---CAAA-----ATTTT----GC---CA-TTTGCGTAACA--TTATCGCCATAAAAACCATGAC-AAATGTGTT-CGAC-AAA-CCGAC----ACAAGTGACAGGT---A---A-CTCATCAAC-C---TTACTTGACCCTATTATCATATCCGA
gi|13323 : AAAGTATTTTAAACATAAGATTTACCA--TTGTAATTACT-T-TGTTAGTGCTCA-TGTCTG-GAGAT--GTA---GA-GTTAAATCCT-GGACCC---TT--CCC-AGAAATA----------GAC-CACACT--GT-CT--TTCATTTT-TACATTTAAACATACGTAG----TATC-CGAAA-C-AAACTAGAGTATATAAAGCAACAT--TTT-TT-GGACTTCGATATTATTTGTTTTACAGAATCTCAT-TTA---ACGACC----GATAT---TACTGG-------GA-TTGATTAAG-----------A-CGGATA--CTCTG-A----AC-CA---TTT-CGTA-AAGATAACACTGCACACTC-TAGTGG----A-CTTCTAAGTTATATAT-----CTACTA-AGC----TTATG---TC-G--AAACGA-A--TGTTAATTTTAGAATGT-CCCTTTGTT-GATAGTATATGGG-T---AGA----GGTGAACT-ACGGGCGGGA--AA-----G------------CTTT-T---TACTTTGTAATGTGTATCGTCCTCCAAAT-ACGCCTGT-TTTATTTTGGAAC-T-ATTTC--AGTATAAGTATAGA-AAAAGC----ACTTGATCT--ATCCAA---AAATATTGTCATCGTCGGCGACATAAATGAAGATCAATTTAATA---TAAA-----TAATT----AT---CA-CTTAAAGAATG--TCATGCTTATCAATAACTTAAC-TAATGTTAT--AACTGAA-CCCAC----CAGAACAACGCGT---A---C-CTCATCAACTC---TTA-TTGACCCAATTATAATCTCAGACACATATAC--------CA-GTTTG-AATTCTGGC----------------ACA--AACGAAATAAGTGATCATCAAGC--TACA
gi|13324 : AAAGTGCTGTTAATTTA-AAT-TGTTAATTTATTATT--TGTATGTTTGTTTTTA-TGCTGGCGACATAGGTT--------CTAACCCT-GGTCCTG--TTAGTGC-AAA--CAATTCT---GCAAA-TATA---GGTGCTATATC-TTTAGTTCATCTGAAAATACGAAGT-ATCAGT-C---A-C-AAACTTAAGTTCATTTATGGCAAT--TTT-CT-TGACTTCAATGAAGTATGTTTTACAGAAACATATCTTG---ATGA--T---AATAT---C-A-CG-------AA-T-GATTCAA---T---TTC-ATTTGAAC-ATTTTA-A-T---TGTAAACTTTATAGAAAAGACAGAAGTACTCACTCAGGGAGG----T--TGTTAACTTG----C-----CAG--ATGATGA-ACTTTGAGCTC--------GTCG--TTTTGACCTT-GAAAACGACAATA-TT-AATTTTATTTGGACT---AAACTCCGTTCAGTT-AC-------GTCAG-TTACG---T----CAGCTTCTGT---TA---TGTGACATATATCGTTTTCCGAAT-ACTGATGT-ATCTTTCTGAAAT-G-ACTTA--AACATTAATATAGA-ACATGC----CCTGGA--T--GTC-AACCCTAATATAGTTATCGTTCGCTATTTGAACCAGGTCTTACTGAACA---C-AA-----ATATC----ACA--TA-TCTACGGAATA--TCATGTGTTTTAATACTCTTTT-AAATATAAT--AAT-AAATCCGAT----ACATATTTCATAT---A---CTCTCATAGAC-A----TATTTTA----ATTA-CAGA-CGGAC-TG-ACAT--------CAC---TA-AATGTTGACACAA--TTGACGT-AGATAATAAC--AG-AAGTGACTACGAAGCAATTTGCTC---ATATTTAAATTTGACAGATTTC-AACAAACATGTTCTTAAAG
gi|13325 : GTATTGTCAATCTCCAATGTGCTA--TGGTCATC-CTGT-TATTAGTCTTGA-TGTCAG-GAGAT--GTT---GA-AACAACTCCC-GGTCGCGACTT--TAC-GGA--TA---CT---GCGAA-CATACTAGGTGCTATTTCAATTA-TCCATATAAATATAAGGAGC-ATTATC-C---A-T-AAATTTGATTTTATATCCCAAAAC--TTT-AC-TGATATTGACATAATGTGCTTTACTGAAACTCATCTTA---ACAACTT---GGTAC---C-TTCT-------GA-C-GATTTAG---T---T---C-TTGACA-ACTTTG-A-CGGATGTA---TTTACAGAGAAGATTGTACTTCTCATTC-GGTAGG----T-CTTTTAACTTATGTTT-----CAA--A-GAC-A-AGTATG---TCAA--AAAAGACG--TACGGATCTC-GAAAAC-ACGGTAGTC-CATGCAATATGGG-T---AGA----GATTTGTT-AC-------A--AA-T--CG---T----CTTCCTTT-T---TACTTTATAATATATATCGTTCTCCAAAT-ACACTATT-TTGTTTTTGGGAA-A-ATTTT--GATATTTCTATCGA-ACGTGC----TTTCGA-----ATCAAATTCCAATATTGTTATTGTCGGTGATCTAAACCAAGATTTATCG-GCA---AAAC-----AGACT----GC---CA-CTTACGTAACA--TTATCATCATGAATAACATGAA-AAATATAAT-CGAT-AAG-CCGAC----ACGAGTGATAGAT---A---C-CTCAGCAAC-C---TTACATGACCCTACTATCATATCCGACA-ATATAC--------TACCTTTA-ACCTCTGACGTAA--TAGACAT-TGATA--GACG-AGTTAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
gi|13326 : AATTTACAA--TCGTTATT-ATGT-TGTTAGTGCTCT-TGTCTG-GGGAT--ATT---GCCGA-AAATCCA-GGTCT----TT--TATTAGA--AA---AT---AAGAG-CACAC--ACTG-TATTTCTATTC-TACATATTAATATCCGAAGT-ATTCGA-A---A-C-AAGTTTAATTACATAAAAAATAAT--TTT-AT-GGATTTTGATATACTTTGTTTTACTGAAACTCA-CTTA---AC
gi|13327 : T-TACTAGTTTTGA-TGTCAG-GCGAT--ATTTCCGA----AAATCCT-GG-----ACCG--TAT-GAA--AA---CTCAAATGAAATATGCAAAG-GCC-TTTCAATAG-CTCATTTAAATATTAGGAGC-AT--TCGC---A-CAAAACTAGATTACAT---CAAGGATTATTT-GCTTGATTTTGATATTCTATGCTTTACAGAGACCCACCTTACTGACGACATCAAGA-ACAAAT-CTCTTTTACTGGA-C-G-TT------T---T---A-TCCGGC-CCTTTG---CGACTG-----------GATAAGACTGCA-TTCTCA-----AGTGG----A-CTGTTGACTTATGTTT-----CAA--A-TA--A-ATTA-G---TT-GGTAAACGATT--GACATGTTTA-GACAAT-CCATCTGTT-GACTCAATCTAGA-C---AGA----GATTAAGT-AC-------A--CA-T--GA---A----CCACAGTA-A---TATTATGCAATGTGTATCGACCACCTAAT-TCAAATGT-TTCATTTTGGGAT-A-ATTTT--AATATTTCAATAGA-AATTGC----CCTTGA--T--AT-TAATAAAAATCTCGTTATTGTCGGTGACTTAAATG--------TTGA-CATTTTAAACCCTTATAGTCA--AC---CC-CTTA-ATAATA--TTATGTTTTTAAATAATCT-ACGCAATGTTAT-ATCC-GAA-CCTAC----CCGAATT-CAAAT----------TCAACGGC-CACATTGATAGATCCAATTATTAT
gi|13328 : T-TATTA----TAA-TGTCCG-GTAAC--GTG---GA-ATCAAATCCC-GATCCTCCTTC--TAC-GGAG-CA---TT----CGAA-TG-GCT---TG-TCTTT--ATT---TCATTTTAATATTCGCAGC-AT-ATG-A---AAC-AAATTAGAATTTATTAAAGATAAT--TTTCAA-T-ACTTTGATATTTTGTGTTTTACCGAAACACATCTTA---CTGAAAT---GGTA-------TAT-------GA-T-GATATAT---TATAC---A-TTGATAGACATT----CTGATGTA---T--ATAGGAAGGATAGCACTGCGCATTC-CGGTTG----G-CTCCTCGTTTATGTTTAATTGCAA--A-GAG-A------G---TT-G--AAAAA------------CTA-GAAAAT-CCTCT-TTCAGACTCGATTTGGA-T---TGA--------AATA-AA-------A--AA-T--CAAAATAAAACT--ATTC-T---TA-TCTGTATCCTATACCGACAACCGAATGAC-CCTGT-ACAGTTTTGGGAT-G-ACTTA--AATATTAGAATCGATAAG-GC----CTTTGAACT--TTCAAA---CAGTGTTATTATTTTAGGTGATATAAACGAAGATCAATTGGCCG---CAAA-----TAATC----AT---CG-TTTGAAAGACA--TTTTGTTACTTAATAATTTGAC-CAATGTTAT-AAAT-GAG-CCCAC----ACGTGTAACAGACAGAA---C-GTCGACAG-------TAATAGACCCCATCGTTAT-TTCGA
gi|13329 : TACTTTTGAATGT-AG-GAGAC--ATA---GA-AAGCAATCCCAGG--CCGACAA---AC-G-A--TA---C--------A-CAT-----GTTCTAT--CGATTT-TATACTGTAATATTAGAAGT-ATTAGA-A---A-T-AAGATAAGTTTTATTGTTGAAAACCTTTT-A---GACCATGATATTCTTTGTTTTACTGAAAGGCACCTTG---ATAATCA---GAAAC---C-AAAT-------GA-C-TCTTTAATACT---T---A-ATGAAA-ACTTTG-A-T--ATAT----TTTATAGAAAAGACCGTTCTAATCAT----GGAGGGGGATACTT---ATTTATGTTT-----CAA--A-
gi|13330 : ttattactccTTTCATTTT-TACATTTAAACATACGTAG----TATC-CGAAA-C-AAACTAAAGTATATAAAGCAACAT--TTT-TT-GGACTTCGATATTATTTGTTTTACAGAATCTTAT-TTA---AAGGCC----GATAT---TACTGG-------GATT-GATTTAG-----------A-CGGAT--ACTCTGTA-C-----CA---TTT-CGTA-AAGATAACACTGCACACTC-TAGTGG----A-CTTCTATGTTATATAT-----CTACTA-AGC----TTATG---TC-G--AAACGA-A--TGTTAATTTTAGAATGT-CCCTTTGTT-GATAGTATATTGG-T---AGA----GGTGAACT-AC-------G--GA-C--GG---T----AAAGCTTT-T---TACTTTGTAATGTGTATCGTCCTCCAAAT-ACACCTGT-TTCATTTTGG--A-A-CTTTTTCAGTATAAGTATAGA-AAAAGC----TCTTGATCT--ATCCAA---AAATGTTGTCATCTTCGGCGACATCAATGAAGATCAATTAAATA---TAAA-----TAATT----AT---CA-CTTAAAGAATG--TCATGCTTATCAATAACTTAAC-TAATGTTGT-AAAT-GAA-CCCAC----CAGAACAACGCGT---A---C-GTCATCAACTC---TTA-TTGACACAATTATAATCTCAGACACATATAC--------CA-GTTTG-AATTCTG--GT-------AC-T-T--TA--GA---AATCAGTGATCATAAAGC--TACA
gi|13331 : TCA-TGCATCTAAATATCCGTAGC-ATAAGG-A---A-T-AAGCTCGAGTATGTCAAAGATAAT--TTC-CT-TGATTACGATGTTATCTGCTTCTCTGAAACTCAT-TTA---ACT-CAA---GATAT---TTCTC--------AA-C-CATATA----T---TGAAA-TGAACA-ATTTTG-AACAAA-ATA---TTTACCGTTAAGATAATACCGCCTATT------GA----T-CT--------ACGTTT-----CGA--A-CTC-A-CTTATC---TC-A--AAACGTCA--TTTAGCACTC-GAAACA-ACGACAATT-GATCTTATTTGGA-T---CGA----AGTTAATT-TT-------A--AA-G--GG---G----AATAAATA-T---TAGTTTGTAATGTTTATCAACCAGGAAAT-TCACCAGT-TTCCTTCTGG-AA-AGACTTA--AATATATCTATTGA-AAAAGC----TTTTGA-----ATATAATCCTAAAATTATCATTGTAGGAGATATTTATGAAGA-CTATTT---------AA-----ACGTTAGTAGCAAACA-ATTA--AAACATTTTATGATTAACAACAGCTTTAA-TAATGTAAT--AACAGAA-GCAAC----AAGAGTAACTGAT---AGGTC-CTC
gi|13332 : TTTTAATCTATGTTT-----CAA--A-T-C-ATCTCATT---TC-A--AAAAGAAGATTA--GATTTA-GAATGT-CCGTTAGTT-GATTCTGTTTGTG-T---TGA----AATCAAGC-AC-------A--AAAT--GG---A----CCGATTTT-TGTGTGCTTTGTA-----TACCGTTCCCCGAAC-ACGCCTGTAGCATTTTTG--AATA-ATTTT--AAAACATGTATTGA-AAAAGC----TCTTGA--TTTGTCAAA---AAATATAGTTTTAGTAGTCGATATTAACGAGGACCAATTAAATA---CTAA-----CAATA----AT---CATCTTA-GAAATA--CTATACTAATTAACAATCTGAC-AAATGTCAT-T-ACAGAA-CCAAC----CAGAGTAACTGAA---A---C-TACATCAAC-T---CTAATAGATCCAATACTTATATCAGATACATATA---------AACCTCTC-AATTCTG
gi|13333 : ATATGGG-T---AGA----GGTGAACT-ACGGGCGGGA--AA-----G------------CTTT-T---TACTTTGTAATGTGTATCGTCCTCCAAAT-ACGCCTGT-TTCATTTTGGAAC-T-ATTTC--AGTATAAGTATAGA-AAAAGC----ACTTGATCT--ATCCAA---AAATATTGTCATCGTCGGCGACGTAAATGAAGATCAATTTAATA---TAAA-----TAATT----AT---CA-CTTAAAGAATG--TCATGCTTATCAGTAACTTAAC-TAATGTTAT--AACTGAA-CCCACCAGAACAAGCG-----T---A---C-CTCATCAACTC---TTA-TTGACCCAATTATAATCTCAGACACATATAC--------CA-GTTTG-AATTCTG--GTAC--TTTACATGTCCCA--AACGAAATAAGTGATCATAAAGC--TACA
gi|13334 : CAGT-TTATTTTTGGGAA-A-ATGTT--AATATTTCTATCGA-ACGTGC----ATTCGA-----ATCTAATTCCAATATTGTTATTGCCGGTGATCTAAACCAAGACTTATTGAGCA---AAAG-----AGACT----GC---CA-CTTACGTAACA--TTATCATCATAAATAACATGAA-AAATATAAT-CGAC-AAA-CCGAC----ACGAGTGACAGAT---A---C-ATCAGCAAC-C---TTACTTGACCCTATTATCATATCCGACG-GTATAC--------TACCTTTA-ACCTCTGACGTAA--TAGACAT-TGATA--GACA-AGTAAGCGACCACAAAGC--TACACTCTTAATGAAAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCAAAAATTCT
gi|13335 : TCGTCGGCGACATAAATGAAGATCAATTAAATA---TCAA-----TAACT----AT---CA-CTTAAAGAATG--TCATGCTTATCAATAACTTAAC-TAATGTTATACAACAGAA-CCCAC----CAGAACAACACGT---A---C-GTCATCAACTC---TTA-TTGACTCAATTATAATCTCAGACACATATAC--------CA--GTTAGAATTCTG--GTACTTTAGATGT-C-CCA--AACGAAATCAGTGATCATAAAGC--TACA
gi|13336 : ATTAT-ATATCCGACA-ATATACAAATGTATTACCTTTA-ATCTCTGACGTAA--AAGACAT-TGAAA--GAAG-TGTTAGTAACCACAAAGC--TACACTATTAATAATAAAGTTTCAC-GATTTCCAGCAAACATGTGC---AAGCG
Alignments
lowQualScore : 1111111111 1111111111 11111 11111 111111 222222222222222222 111111111111 11111 1111 11111111 333333333333333333333333333333 33333 1111 111111111 111111 11111 1 11 111111111111 1
lowQualScore : 0 1 0 2 66 77 4 1 3 0 3 555 0000000000 3 2 33 55 3 88 7777777777 3 88 2 1 2 88 1 0 1 55 1 33333 444 0 1 0 1 11111 999 7777 1 1 1 2 0 3 555 0 111111 111111111111111111 6 888888888888 3 66 11111 555 2 1 6 1 4 77 1 999999 0 77777 88 3 0000 555 9999 5 00000000 66 44 22 1 55 1 1 0 3 555 888888 0 0 3 888888888888888888888888888888 3 555 0 3 0 1 2 22 2 444 111 1 2 444 6666 55555 3 4444 1 0 1 0 1 1 3 6666 8888888 111111111 2 8 1 555 22 0 1 1 0 33 1 777777 2 2 5555 2 444 444 2 1 22222 2 0 2 3 1 0 33 333333333333 3 1 5 55 0 0 444 55 0 1 55 5 4 77
lowQualScore : . . . . .. .. . . . . . ... .......... . . .. .. . .. .......... . .. . . . .. . . . .. . ..... ... . . . . ..... ... .... . . . . . . ... . ...... .................. . ............ . .. ..... ... . . . . . .. . ...... . ..... .. . .... ... .... . ........ .. .. .. . .. . . . . ... ...... . . . .............................. . ... . . . . . .. . ... ... . . ... .... ..... . .... . . . . . . . .... ....... ......... . . . ... .. . . . . .. . ...... . . .... . ... ... . . ..... . . . . . . .. ............ . . . .. . . ... .. . . .. . . ..
lowQualScore : 4 0 7 5 99 55 0 6 6 6 6 555 7777777777 6 3 44 00 6 66 7777777777 6 66 1 3 5 77 0 7 4 77 7 55555 888 5 0 4 0 22222 000 9999 0 1 0 1 2 5 444 8 888888 888888888888888888 7 555555555555 3 77 77777 888 1 2 5 0 2 99 7 999999 1 77777 55 1 9999 888 5555 1 77777777 99 33 00 6 11 0 0 8 1 444 666666 7 5 1 888888888888888888888888888888 1 444 8 1 2 0 9 22 9 555 333 2 9 999 1111 11111 8 9999 9 2 0 3 1 9 1 6666 9999999 666666666 7 3 0 444 11 8 0 0 9 77 0 999999 7 1 7777 3 777 777 7 0 99999 6 1 0 2 4 7 99 777777777777 3 0 7 00 1 4 222 00 9 0 00 7 9 99
consensus : CAAAGTATTGTCAATNTCCAATGTGCTA--TGGTCATC-CTGT-TATTAGTTTTGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGACTT--TAC-GGA--TA---CT---GCGAA-CATACTAGGTGCTATTTCAATTA-TNCATTTAAATATACGGAGC-ATTATC-C---A-C-AAACTNGATTNTATTNNCNAAAAC--TTT-AC-TGATNTCGATATNATGTGCTTTACTGAAACTCATCTTA---ACGACNT---GATA-C---C-CTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACTTTG-ACGGATGTA---TTTACAGAGAAGATNGTACTNCTCATTC-GGGAGG----T-CTTTTAACTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACG--TACGGATCTC-GAAAGC-ACNNTAGTC-GATNCNATATGGG-T---AGA----GGTTAGTT-AC-------A--AA-T--CG---T----CTTCCTTT-T---TACTTTGTAATGTATATCGTCCTCCAAAT-ACACCNGT-TTNTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGC----TCTCGA--T--ATCNAATTCNAATATTGTTATCGTCGGCGATNTAAACGAAGATCNATTGAGCA---NAAA-----ANATT----GC---CA-CTTACGNAACG--TTATGNTCATNAATAACNTGAC-NAATGTNAT-CGAC-GAA-CCGAC----ACGAGCGACAGAT---A---C-CTCANCAAC-C---TTACTTGACCCNATTATCATATCCGACACGTATAC--------CACCTTTA-ANTTCTGACGTAA--TAGACAT-TGATA--GACG-AGTNAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
Reference ( family-843 ) : CAAAGTATTGTCAATNTCCAATGTGCTA--TGGTCATC-CTGT-TATTAGTTTTGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGACTT--TAC-GGA--TA---CT---GCGAA-CATACTAGGTGCTATTTCAATTA-TNCATTTAAATATACGGAGC-ATTATC-C---A-C-AAACTNGATTNTATTNNCNAAAAC--TTT-AC-TGATNTCGATATNATGTGCTTTACTGAAACTCATCTTA---ACGACNT---GATA-C---C-CTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACTTTG-ACGGATGTA---TTTACAGAGAAGATNGTACTNCTCATTC-GGGAGG----T-CTTTTAACTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACG--TACGGATCTC-GAAAGC-ACNNTAGTC-GATNCNATATGGG-T---AGA----GGTTAGTT-AC-------A--AA-T--CG---T----CTTCCTTT-T---TACTTTGTAATGTATATCGTCCTCCAAAT-ACACCNGT-TTNTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGC----TCTCGA--T--ATCNAATTCNAATATTGTTATCGTCGGCGATNTAAACGAAGATCNATTGAGCA---NAAA-----ANATT----GC---CA-CTTACGNAACG--TTATGNTCATNAATAACNTGAC-NAATGTNAT-CGAC-GAA-CCGAC----ACGAGCGACAGAT---A---C-CTCANCAAC-C---TTACTTGACCCNATTATCATATCCGACACGTATAC--------CACCTTTA-ANTTCTGACGTAA--TAGACAT-TGATA--GACG-AGTNAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
gi|13319 : CAAAGTATTGTCAATCTCCAATGTGCTT--TGGTCATC-CTGT-AATTAGTTTTGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGATTT--TAC-GGA--TA---CT---GTGAA-CGTACTAGGTGCTATTTCAATTA-TCCTTTTAAATATAAGGAGC-ATTATC-C---A-T-AAATTTGATTTTATTTCCCAAAAC--TTT-AC-TGATATTGACATAATGTGCTTTACTGAAACTCATCTTA---ACAACTT---GGTA-C---C-CTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACTTTG-AGGGATGTA---TCTACAGAGAGGATTGTACTTCTCATTC-CGGAGG----T-CTTTTAGCTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACC--TACGGATCTC-GAAAGC-ACAGTAGTC-CATGCAATATGGG-T---AGA----GATTTGTT-AC-------A--AA-T--CG---T----CTTTCTTT-T---TACTTTGTAATATATATCGTTCTCCAAAT-ACACCAGT-TTGTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGC----TCTCGA-----ATCAAATTCCAATATTGCTATTGTCGGTGATCTCAACCAAGATTTATTGAGCA---AAAG-----AGACT----GC---CA-TTTACGTAACA--TTATCATCATAAATAACATGAA-AAATATAAT-CGAT-AAA-CCGAC----ACGAGTGACAGAT---A---C-CTCAGCAAC-C---TTACTTGACCCTATTATCATATCCGAC-TGTATAC--------TACCTTTA-ACCTCTGACGTAA--TAGACAT-TGATA--GACG-AGTTAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTACAAACAAACATGTTC--AAAGCGAAAAATCT
gi|13320 : CAAAGTATTGTCAATCTCCAATGTACTT--CGGTCATC-CTGT-TATTAGTTTCGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGACTT--TAC-GGA--TA---CT---GTGAA-CATACTAGGTGCTATTTCAATTA-TCCATTTAAATATAAGGGGC-ATTATC-C---A-T-AAATTTGATTTTATTTCCCAAAAC--TTT-AC-TGATATTGACATAATGTGCTTTACTGAAACTCATCTTA---ACAACTT---GATA-C---C-TTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACATTG-ACGGATGTA---TCTACAGAGAGGATTGTACTTCTCATTC-GGGAGG----T-ATTTTAACTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACG--CACGGATCTC-GAAAGC-ACAGTAGTC-CTAGCAATATGGG-T---AGA----GGTTAGTT-AC-------A--AA-T--CG---T----CTTTCTTT-T---TACTTTGTAATATATATCGTTCTCCAAAT-ACACCAGT-TTGTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGCTCGTTCTCGA-----ATCAAATTCCAATATTGTTATTGTCGGTGATCTCAACCAAGATTTATTGAGAA---AAAT-----AAATT----GC---CA-CTTACGTAACA--TTATTATCATAAATAACATGAA-AAATATAAT-CAAT-AAA-CCGAC----ACGAGTGACAGAT---A---C-CTCAG-AA-------TAAT--ACCCTATTATCATATCCGACA-GTATAC--------TACCTTTA-ATTTCTGACGTAA--TAGACAT-TGATA--AACG-ATAAAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTACAAACGAACATGTTC--AAAGCGAAAAGTCT
gi|13321 : CAAAGTATTGCTAATATCCACTGTGCTA--TGGTCATC-ATGT-TATTAGTCTTGA-TGTCAG-GAGAA--GTT---GA-GACAAATCTC-GGTCTCGACTT--TAC-GGA--TA---CT---TCGAA-CATACTAGGTGCAATTTCAATTA-TCCATTTAAACATACGGAGC-ATTATC-A---A-T-AAATATGATGTTATTGCCTAAAAC--CTT-AC-TGATATTGACATAATGTGTTTTACTGAAACTCATATCA---ACAATTT---GGTA-C---C-TTCT-------GGC-GATTTAG---T---T---A-TTAATA-ACTTTG-ACGGATGTA---TCTATAGAGAAGATTGTACTTCTCATTC-GGGAGG----T-CTTTTAACTTACGCTT-----TAA--A-GAC-A-ATTATG---TC-A--AAAAGACG--CACGGATCTC-GAAAGC-ACTATAGTT-CATGTAATATGGG-TTTCAGA------TTTGTT-AC-------A--TA-T--CG---T----GTTTCTTT-T---AACTTCGTAATGTAAATCGTTCTACAAAT-ACACAGGT-TTGTTTTTGGGAA-AATTTA--AATATTTCTATCGA-ACGTGC----TTTCGA-----ATCTAATTCAAATATTGTTATTGTTGGTGATCTAAACAAAGATTAATTGAGCA---CAAG-----AGACT----GC---CA-ATTACGTAACA--TTATCATCATAAATAACATGAC-AAATGTTAC-CGAC-AAA-CCGAC----ACGAGAGACAGAT---A---C-CTCAGCAAT-C---TTACTTGATCCTATTATCATATCCGACA-GTATAC--------TACTTTTA-ACCTCTGACGTAA--TATACAT-TGATA--GAAG-AGTTAACGACCACAAAGC--TACACGCTTAACAATAAAGTTTCAC-AATTTCCAACAAATATGTTC--AAAGCGAAAAGTCT
gi|13322 : CAAAGTATTGTTTATATCCACTGTGTTA--TGGTCATC-CTGT-TTTTAGTCCTGA-TGTCGG-GAAA--------------CAATTACA-GGTCCCGACTT--TAC-GGA--TA---CC---TCTAA-CATATTAGATGCTAT----------CCATTTAAATTTACGGAGTTATTATC-C---A-T-AAATTTAATTATATTGTCCGAAAG--TTT-AC-TGGTATTGATATAATGTACTTCAATGAAACTCATCTTA---ACCATAT---GGTA-C---C-TTCT-------GGC-GATTTAG---T---T---A-TTGATA-TCTATC-ACGGATGTA---TCTATAGAGGAGATTTTACT-CTCATTC-GGGAGG----T-CTTTTGACTTACGTGT-----CAA--A-GAC-A-CTTTTG---TC-C--AAA-GACG--TACGGATCTC-AAAAGC-ACTGCAGTC-CATGCAATATGGG-T---AGA----GATTTTTTTAC-------A--AA-T--CG---T----CTTCCTAT-T---TACTTTTTAATGTATATCGTTCTCCAAAT-ACACCAGT-TTGTTTTTGGGGA-AAAAAT--AATATTTCTATCGT-ACGTGC----TTTCGA-----ATCAAATTCAAATATTATT---GTTGGTGATCTAAACCAAGATGTATTGAGCA---CAAA-----ATTTT----GC---CA-TTTGCGTAACA--TTATCGCCATAAAAACCATGAC-AAATGTGTT-CGAC-AAA-CCGAC----ACAAGTGACAGGT---A---A-CTCATCAAC-C---TTACTTGACCCTATTATCATATCCGA
gi|13323 : AAAGTATTTTAAACATAAGATTTACCA--TTGTAATTACT-T-TGTTAGTGCTCA-TGTCTG-GAGAT--GTA---GA-GTTAAATCCT-GGACCC---TT--CCC-AGAAATA----------GAC-CACACT--GT-CT--TTCATTTT-TACATTTAAACATACGTAG----TATC-CGAAA-C-AAACTAGAGTATATAAAGCAACAT--TTT-TT-GGACTTCGATATTATTTGTTTTACAGAATCTCAT-TTA---ACGACC----GATA-T---TACTGG-------GATTGATTAAG-----------A-CGGATA--CTCTG-A---AC-CA---TTT-CGTA-AAGATAACACTGCACACTC-TAGTGG----A-CTTCTAAGTTATATAT-----CTACTA-AGC----TTATG---TC-G--AAACGA-A--TGTTAATTTTAGAATGT-CCCTTTGTT-GATAGTATATGGG-T---AGA----GGTGAACT-ACGGGCGGGA--AA-----G------------CTTT-T---TACTTTGTAATGTGTATCGTCCTCCAAAT-ACGCCTGT-TTTATTTTGGAAC-TATTTC--AGTATAAGTATAGA-AAAAGC----ACTTGA--TCTATCCAA---AAATATTGTCATCGTCGGCGACATAAATGAAGATCAATTTAATA---TAAA-----TAATT----AT---CA-CTTAAAGAATG--TCATGCTTATCAATAACTTAAC-TAATGTTAT--AACTGAA-CCCAC----CAGAACAACGCGT---A---C-CTCATCAACTC---TTA-TTGACCCAATTATAATCTCAGACACATATAC--------CA-GTTTG-AATTCTGGC----------------ACA--AACGAAATAAGTGATCATCAAGC--TACA
gi|13324 : AAAGTGCTGTTAATTTA-AAT-TGTTAATTTATTATT--TGTATGTTTGTTTTTA-TGCTGGCGACATAGGTT--------CTAACCCT-GGTCCTG--TTAGTGC-AAA--CAATTCT---GCAAA-TATA---GGTGCTATATC-TTTAGTTCATCTGAAAATACGAAGT-ATCAGT-C---A-C-AAACTTAAGTTCATTTATGGCAAT--TTT-CT-TGACTTCAATGAAGTATGTTTTACAGAAACATATCTTG---ATGA--T---AATA-T---C-A-CG-------AAT-GATTCAA---T---TTC-ATTTGAAC-ATTTTA-AT---TGTAAACTTTATAGAAAAGACAGAAGTACTCACTCAGGGAGG----T--TGTTAACTTG----C-----CAG--ATGATGA-ACTTTGAGCTC--------GTCG--TTTTGACCTT-GAAAACGACAATA-TT-AATTTTATTTGGACT---AAACTCCGTTCAGTT-AC-------GTCAG-TTACG---T----CAGCTTCTGT---TA---TGTGACATATATCGTTTTCCGAAT-ACTGATGT-ATCTTTCTGAAAT-GACTTA--AACATTAATATAGA-ACATGC----CCTGGA--T--GTC-AACCCTAATATAGTTATCGTTCGCTATTTGAACCAGGTCTTACTGAACA---C-AA-----ATATC----ACA--TA-TCTACGGAATA--TCATGTGTTTTAATACTCTTTT-AAATATAAT--AAT-AAATCCGAT----ACATATTTCATAT---A---CTCTCATAGAC-A----TATTTTA----ATTA-CAGA-CGGAC-TG-ACAT--------CAC---TA-AATGTTGACACAA--TTGACGT-AGATAATAAC--AG-AAGTGACTACGAAGCAATTTGCTC---ATATTTAAATTTGACAGATTTC-AACAAACATGTTCTTAAAG
gi|13325 : GTATTGTCAATCTCCAATGTGCTA--TGGTCATC-CTGT-TATTAGTCTTGA-TGTCAG-GAGAT--GTT---GA-AACAACTCCC-GGTCGCGACTT--TAC-GGA--TA---CT---GCGAA-CATACTAGGTGCTATTTCAATTA-TCCATATAAATATAAGGAGC-ATTATC-C---A-T-AAATTTGATTTTATATCCCAAAAC--TTT-AC-TGATATTGACATAATGTGCTTTACTGAAACTCATCTTA---ACAACTT---GGTA-C---C-TTCT-------GAC-GATTTAG---T---T---C-TTGACA-ACTTTG-ACGGATGTA---TTTACAGAGAAGATTGTACTTCTCATTC-GGTAGG----T-CTTTTAACTTATGTTT-----CAA--A-GAC-A-AGTATG---TCAA--AAAAGACG--TACGGATCTC-GAAAAC-ACGGTAGTC-CATGCAATATGGG-T---AGA----GATTTGTT-AC-------A--AA-T--CG---T----CTTCCTTT-T---TACTTTATAATATATATCGTTCTCCAAAT-ACACTATT-TTGTTTTTGGGAA-AATTTT--GATATTTCTATCGA-ACGTGC----TTTCGA-----ATCAAATTCCAATATTGTTATTGTCGGTGATCTAAACCAAGATTTATCG-GCA---AAAC-----AGACT----GC---CA-CTTACGTAACA--TTATCATCATGAATAACATGAA-AAATATAAT-CGAT-AAG-CCGAC----ACGAGTGATAGAT---A---C-CTCAGCAAC-C---TTACATGACCCTACTATCATATCCGACA-ATATAC--------TACCTTTA-ACCTCTGACGTAA--TAGACAT-TGATA--GACG-AGTTAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
gi|13326 : AATTTACAA--TCGTTATT-ATGT-TGTTAGTGCTCT-TGTCTG-GGGAT--ATT---GCCGA-AAATCCA-GGTCT----TT--TATTAGA--AA---AT---AAGAG-CACAC--ACTG-TATTTCTATTC-TACATATTAATATCCGAAGT-ATTCGA-A---A-C-AAGTTTAATTACATAAAAAATAAT--TTT-AT-GGATTTTGATATACTTTGTTTTACTGAAACTCA-CTTA---AC
gi|13327 : T-TACTAGTTTTGA-TGTCAG-GCGAT--ATTTCCGA----AAATCCT-GG-----ACCG--TAT-GAA--AA---CTCAAATGAAATATGCAAAG-GCC-TTTCAATAG-CTCATTTAAATATTAGGAGC-AT--TCGC---A-CAAAACTAGATTACAT---CAAGGATTATTT-GCTTGATTTTGATATTCTATGCTTTACAGAGACCCACCTTACTGACGACATCAAGA-A-CAAAT-CTCTTTTACTGGAC-G-TT------T---T---A-TCCGGC-CCTTTG--CGACTG-----------GATAAGACTGCA-TTCTCA-----AGTGG----A-CTGTTGACTTATGTTT-----CAA--A-TA--A-ATTA-G---TT-GGTAAACGATT--GACATGTTTA-GACAAT-CCATCTGTT-GACTCAATCTAGA-C---AGA----GATTAAGT-AC-------A--CA-T--GA---A----CCACAGTA-A---TATTATGCAATGTGTATCGACCACCTAAT-TCAAATGT-TTCATTTTGGGAT-AATTTT--AATATTTCAATAGA-AATTGC----CCTTGA--T--AT-TAATAAAAATCTCGTTATTGTCGGTGACTTAAATG--------TTGA-CATTTTAAACCCTTATAGTCA--AC---CC-CTTA-ATAATA--TTATGTTTTTAAATAATCT-ACGCAATGTTAT-ATCC-GAA-CCTAC----CCGAATT-CAAAT----------TCAACGGC-CACATTGATAGATCCAATTATTAT
gi|13328 : T-TATTA----TAA-TGTCCG-GTAAC--GTG---GA-ATCAAATCCC-GATCCTCCTTC--TAC-GGAG-CA---TT----CGAA-TG-GCT---TG-TCTTT--ATT---TCATTTTAATATTCGCAGC-AT-ATG-A---AAC-AAATTAGAATTTATTAAAGATAAT--TTTCAA-T-ACTTTGATATTTTGTGTTTTACCGAAACACATCTTA---CTGAAAT---GGTA--------TAT-------GAT-GATATAT---TATAC---A-TTGATAGACATT---CTGATGTA---T--ATAGGAAGGATAGCACTGCGCATTC-CGGTTG----G-CTCCTCGTTTATGTTTAATTGCAA--A-GAG-A------G---TT-G--AAAAA------------CTA-GAAAAT-CCTCT-TTCAGACTCGATTTGGA-T---TGA--------AATA-AA-------A--AA-T--CAAAATAAAACT--ATTC-T---TA-TCTGTATCCTATACCGACAACCGAATGAC-CCTGT-ACAGTTTTGGGAT-GACTTA--AATATTAGAATCGATAAG-GC----CTTTGAACT--TTCAAA---CAGTGTTATTATTTTAGGTGATATAAACGAAGATCAATTGGCCG---CAAA-----TAATC----AT---CG-TTTGAAAGACA--TTTTGTTACTTAATAATTTGAC-CAATGTTAT-AAAT-GAG-CCCAC----ACGTGTAACAGACAGAA---C-GTCGACAG-------TAATAGACCCCATCGTTAT-TTCGA
gi|13329 : TACTTTTGAATGT-AG-GAGAC--ATA---GA-AAGCAATCCCAGG--CCGACAA---AC-G-A--TA---C--------A-CAT-----GTTCTAT--CGATTT-TATACTGTAATATTAGAAGT-ATTAGA-A---A-T-AAGATAAGTTTTATTGTTGAAAACCTTTT-A---GACCATGATATTCTTTGTTTTACTGAAAGGCACCTTG---ATAATCA---GAAA-C---C-AAAT-------GAC-TCTTTAATACT---T---A-ATGAAA-ACTTTG-AT--ATAT----TTTATAGAAAAGACCGTTCTAATCAT----GGAGGGGGATACTT---ATTTATGTTT-----CAA--A-
gi|13330 : ttattactccTTTCATTTT-TACATTTAAACATACGTAG----TATC-CGAAA-C-AAACTAAAGTATATAAAGCAACAT--TTT-TT-GGACTTCGATATTATTTGTTTTACAGAATCTTAT-TTA---AAGGCC----GATA-T---TACTGG-------GATTGATTTAG-----------A-CGGATA--CTCTGTAC-----CA---TTT-CGTA-AAGATAACACTGCACACTC-TAGTGG----A-CTTCTATGTTATATAT-----CTACTA-AGC----TTATG---TC-G--AAACGA-A--TGTTAATTTTAGAATGT-CCCTTTGTT-GATAGTATATTGG-T---AGA----GGTGAACT-AC-------G--GA-C--GG---T----AAAGCTTT-T---TACTTTGTAATGTGTATCGTCCTCCAAAT-ACACCTGT-TTCATTTTGG--A-ACTTTTTCAGTATAAGTATAGA-AAAAGC----TCTTGA--TCTATCCAA---AAATGTTGTCATCTTCGGCGACATCAATGAAGATCAATTAAATA---TAAA-----TAATT----AT---CA-CTTAAAGAATG--TCATGCTTATCAATAACTTAAC-TAATGTTGT-AAAT-GAA-CCCAC----CAGAACAACGCGT---A---C-GTCATCAACTC---TTA-TTGACACAATTATAATCTCAGACACATATAC--------CA-GTTTG-AATTCTG--GT-------AC-T-T--TA--GA---AATCAGTGATCATAAAGC--TACA
gi|13331 : TCA-TGCATCTAAATATCCGTAGC-ATAAGG-A---A-T-AAGCTCGAGTATGTCAAAGATAAT--TTC-CT-TGATTACGATGTTATCTGCTTCTCTGAAACTCAT-TTA---ACT-CAA---GATATT---T-CTC--------AAC-CATATA----T---TGAAA-TGAACA-ATTTTGAACAAA-ATA---TTTACCGTTAAGATAATACCGCCTATT------GA----T-C--------TACGTTT-----CGA--A-CTC-A-CTTATC---TC-A--AAACGTCA--TTTAGCACTC-GAAACA-ACGACAATT-GATCTTATTTGGA-T---CGA----AGTTAATT-TT-------A--AA-G--GG---G----AATAAATA-T---TAGTTTGTAATGTTTATCAACCAGGAAAT-TCACCAGT-TTCCTTCTGGAAA-GACTTA--AATATATCTATTGA-AAAAGC----TTTTGA-----ATATAATCCTAAAATTATCATTGTAGGAGATATTTATGAAGA-CTATTT---------AA-----ACGTTAGTAGCAAACA-ATTA--AAACATTTTATGATTAACAACAGCTTTAA-TAATGTAAT--AACAGAA-GCAAC----AAGAGTAACTGAT---AGGTC-CTC
gi|13332 : TTTTAATCTATGTTT-----CAA--A-T-C-ATCTCATT---TC-A--AAAAGAAGATTA--GATTTA-GAATGT-CCGTTAGTT-GATTCTGTTTGTG-T---TGA----AATCAAGC-AC-------A--AAAT--GG---A----CCGATTTT-TGTGTGCTTTGTA-----TACCGTTCCCCGAAC-ACGCCTGTAGCATTTTTG--AATAATTTT--AAAACATGTATTGA-AAAAGC----TCTTGA--TTTGTCAAA---AAATATAGTTTTAGTAGTCGATATTAACGAGGACCAATTAAATA---CTAA-----CAATA----AT---CATCTTA-GAAATA--CTATACTAATTAACAATCTGAC-AAATGTCAT-T-ACAGAA-CCAAC----CAGAGTAACTGAA---A---C-TACATCAAC-T---CTAATAGATCCAATACTTATATCAGATACATATA---------AACCTCTC-AATTCTG
gi|13333 : ATATGGG-T---AGA----GGTGAACT-ACGGGCGGGA--AA-----G------------CTTT-T---TACTTTGTAATGTGTATCGTCCTCCAAAT-ACGCCTGT-TTCATTTTGGAAC-TATTTC--AGTATAAGTATAGA-AAAAGC----ACTTGA--TCTATCCAA---AAATATTGTCATCGTCGGCGACGTAAATGAAGATCAATTTAATA---TAAA-----TAATT----AT---CA-CTTAAAGAATG--TCATGCTTATCAGTAACTTAAC-TAATGTTAT--AACTGAA-CCCACCAGAACAAGCG-----T---A---C-CTCATCAACTC---TTA-TTGACCCAATTATAATCTCAGACACATATAC--------CA-GTTTG-AATTCTG--GTAC--TTTACATGTCCCA--AACGAAATAAGTGATCATAAAGC--TACA
gi|13334 : CAGT-TTATTTTTGGGAA-AATGTT--AATATTTCTATCGA-ACGTGC----ATTCGA-----ATCTAATTCCAATATTGTTATTGCCGGTGATCTAAACCAAGACTTATTGAGCA---AAAG-----AGACT----GC---CA-CTTACGTAACA--TTATCATCATAAATAACATGAA-AAATATAAT-CGAC-AAA-CCGAC----ACGAGTGACAGAT---A---C-ATCAGCAAC-C---TTACTTGACCCTATTATCATATCCGACG-GTATAC--------TACCTTTA-ACCTCTGACGTAA--TAGACAT-TGATA--GACA-AGTAAGCGACCACAAAGC--TACACTCTTAATGAAAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCAAAAATTCT
gi|13335 : TCGTCGGCGACATAAATGAAGATCAATTAAATA---TCAA-----TAACT----AT---CA-CTTAAAGAATG--TCATGCTTATCAATAACTTAAC-TAATGTTATACAACAGAA-CCCAC----CAGAACAACACGT---A---C-GTCATCAACTC---TTA-TTGACTCAATTATAATCTCAGACACATATAC--------CA--GTTAGAATTCTG--GTACTTTAGATGT-C-CCA--AACGAAATCAGTGATCATAAAGC--TACA
gi|13336 : ATTAT-ATATCCGACA-ATATACAAATGTATTACCTTTA-ATCTCTGACGTAA--AAGACAT-TGAAA--GAAG-TGTTAGTAACCACAAAGC--TACACTATTAATAATAAAGTTTCAC-GATTTCCAGCAAACATGTGC---AAGCG
Alignments
lowQualScore : 1111111111 1111111111 11111 11111 111111 222222222222222222 111111111111 11111 1111 11111111 333333333333333333333333333333 33333 1111 111111111 111111 11111 1 11 111111111111 1
lowQualScore : 0 1 0 2 66 77 4 1 3 0 3 555 0000000000 3 2 33 55 3 88 7777777777 3 88 2 1 2 88 1 0 1 55 1 33333 444 0 1 0 1 11111 999 7777 1 1 1 2 0 3 555 0 111111 111111111111111111 6 888888888888 3 66 11111 555 2 1 6 1 4 77 1 999999 0 77777 88 3 0000 555 9999 5 00000000 66 44 22 1 55 1 1 0 3 555 888888 0 0 3 888888888888888888888888888888 3 555 0 3 0 1 2 22 2 444 111 1 2 444 6666 55555 3 4444 1 0 1 0 1 1 3 6666 8888888 111111111 2 8 1 555 22 0 1 1 0 33 1 777777 2 2 5555 2 444 444 2 1 22222 2 0 2 3 1 0 33 333333333333 3 1 5 55 0 0 444 55 0 1 55 5 4 77
lowQualScore : . . . . .. .. . . . . . ... .......... . . .. .. . .. .......... . .. . . . .. . . . .. . ..... ... . . . . ..... ... .... . . . . . . ... . ...... .................. . ............ . .. ..... ... . . . . . .. . ...... . ..... .. . .... ... .... . ........ .. .. .. . .. . . . . ... ...... . . . .............................. . ... . . . . . .. . ... ... . . ... .... ..... . .... . . . . . . . .... ....... ......... . . . ... .. . . . . .. . ...... . . .... . ... ... . . ..... . . . . . . .. ............ . . . .. . . ... .. . . .. . . ..
lowQualScore : 4 0 7 5 99 55 0 6 6 6 6 555 7777777777 6 3 44 00 6 66 7777777777 6 66 1 3 5 77 0 7 4 77 7 55555 888 5 0 4 0 22222 000 9999 0 1 0 1 2 5 444 8 888888 888888888888888888 7 555555555555 3 77 77777 888 1 2 5 0 2 99 7 999999 1 77777 55 1 9999 888 5555 1 77777777 99 33 00 6 11 0 0 8 1 444 666666 7 5 1 888888888888888888888888888888 1 444 8 1 2 0 9 22 9 555 333 2 9 999 1111 11111 8 9999 9 2 0 3 1 9 1 6666 9999999 666666666 7 3 0 444 11 8 0 0 9 77 0 999999 7 1 7777 3 777 777 7 0 99999 6 1 0 2 4 7 99 777777777777 3 0 7 00 1 4 222 00 9 0 00 7 9 99
consensus : CAAAGTATTGTCAATNTCCAATGTGCTA--TGGTCATC-CTGT-TATTAGTTTTGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGACTT--TAC-GGA--TA---CT---GCGAA-CATACTAGGTGCTATTTCAATTA-TNCATTTAAATATACGGAGC-ATTATC-C---A-C-AAACTNGATTNTATTNNCNAAAAC--TTT-AC-TGATNTCGATATNATGTGCTTTACTGAAACTCATCTTA---ACGACNT---GATA-C---C-CTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACTTTG-ACGGATGTA---TTTACAGAGAAGATNGTACTNCTCATTC-GGGAGG----T-CTTTTAACTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACG--TACGGATCTC-GAAAGC-ACNNTAGTC-GATNCNATATGGG-T---AGA----GGTTAGTT-AC-------A--AA-T--CG---T----CTTCCTTT-T---TACTTTGTAATGTATATCGTCCTCCAAAT-ACACCNGT-TTNTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGC----TCTCGA--T--ATCNAATTCNAATATTGTTATCGTCGGCGATNTAAACGAAGATCNATTGAGCA---NAAA-----ANATT----GC---CA-CTTACGNAACG--TTATGNTCATNAATAACNTGAC-NAATGTNAT-CGAC-GAA-CCGAC----ACGAGCGACAGAT---A---C-CTCANCAAC-C---TTACTTGACCCNATTATCATATCCGACACGTATAC--------CACCTTTA-ANTTCTGACGTAA--TAGACAT-TGATA--GACG-AGTNAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
Reference ( family-843 ) : CAAAGTATTGTCAATNTCCAATGTGCTA--TGGTCATC-CTGT-TATTAGTTTTGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGACTT--TAC-GGA--TA---CT---GCGAA-CATACTAGGTGCTATTTCAATTA-TNCATTTAAATATACGGAGC-ATTATC-C---A-C-AAACTNGATTNTATTNNCNAAAAC--TTT-AC-TGATNTCGATATNATGTGCTTTACTGAAACTCATCTTA---ACGACNT---GATA-C---C-CTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACTTTG-ACGGATGTA---TTTACAGAGAAGATNGTACTNCTCATTC-GGGAGG----T-CTTTTAACTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACG--TACGGATCTC-GAAAGC-ACNNTAGTC-GATNCNATATGGG-T---AGA----GGTTAGTT-AC-------A--AA-T--CG---T----CTTCCTTT-T---TACTTTGTAATGTATATCGTCCTCCAAAT-ACACCNGT-TTNTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGC----TCTCGA--T--ATCNAATTCNAATATTGTTATCGTCGGCGATNTAAACGAAGATCNATTGAGCA---NAAA-----ANATT----GC---CA-CTTACGNAACG--TTATGNTCATNAATAACNTGAC-NAATGTNAT-CGAC-GAA-CCGAC----ACGAGCGACAGAT---A---C-CTCANCAAC-C---TTACTTGACCCNATTATCATATCCGACACGTATAC--------CACCTTTA-ANTTCTGACGTAA--TAGACAT-TGATA--GACG-AGTNAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
gi|13319 : CAAAGTATTGTCAATCTCCAATGTGCTT--TGGTCATC-CTGT-AATTAGTTTTGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGATTT--TAC-GGA--TA---CT---GTGAA-CGTACTAGGTGCTATTTCAATTA-TCCTTTTAAATATAAGGAGC-ATTATC-C---A-T-AAATTTGATTTTATTTCCCAAAAC--TTT-AC-TGATATTGACATAATGTGCTTTACTGAAACTCATCTTA---ACAACTT---GGTA-C---C-CTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACTTTG-AGGGATGTA---TCTACAGAGAGGATTGTACTTCTCATTC-CGGAGG----T-CTTTTAGCTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACC--TACGGATCTC-GAAAGC-ACAGTAGTC-CATGCAATATGGG-T---AGA----GATTTGTT-AC-------A--AA-T--CG---T----CTTTCTTT-T---TACTTTGTAATATATATCGTTCTCCAAAT-ACACCAGT-TTGTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGC----TCTCGA-----ATCAAATTCCAATATTGCTATTGTCGGTGATCTCAACCAAGATTTATTGAGCA---AAAG-----AGACT----GC---CA-TTTACGTAACA--TTATCATCATAAATAACATGAA-AAATATAAT-CGAT-AAA-CCGAC----ACGAGTGACAGAT---A---C-CTCAGCAAC-C---TTACTTGACCCTATTATCATATCCGAC-TGTATAC--------TACCTTTA-ACCTCTGACGTAA--TAGACAT-TGATA--GACG-AGTTAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTACAAACAAACATGTTC--AAAGCGAAAAATCT
gi|13320 : CAAAGTATTGTCAATCTCCAATGTACTT--CGGTCATC-CTGT-TATTAGTTTCGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGACTT--TAC-GGA--TA---CT---GTGAA-CATACTAGGTGCTATTTCAATTA-TCCATTTAAATATAAGGGGC-ATTATC-C---A-T-AAATTTGATTTTATTTCCCAAAAC--TTT-AC-TGATATTGACATAATGTGCTTTACTGAAACTCATCTTA---ACAACTT---GATA-C---C-TTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACATTG-ACGGATGTA---TCTACAGAGAGGATTGTACTTCTCATTC-GGGAGG----T-ATTTTAACTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACG--CACGGATCTC-GAAAGC-ACAGTAGTC-CTAGCAATATGGG-T---AGA----GGTTAGTT-AC-------A--AA-T--CG---T----CTTTCTTT-T---TACTTTGTAATATATATCGTTCTCCAAAT-ACACCAGT-TTGTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGCTCGTTCTCGA-----ATCAAATTCCAATATTGTTATTGTCGGTGATCTCAACCAAGATTTATTGAGAA---AAAT-----AAATT----GC---CA-CTTACGTAACA--TTATTATCATAAATAACATGAA-AAATATAAT-CAAT-AAA-CCGAC----ACGAGTGACAGAT---A---C-CTCAG-AA-------TAAT--ACCCTATTATCATATCCGACA-GTATAC--------TACCTTTA-ATTTCTGACGTAA--TAGACAT-TGATA--AACG-ATAAAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTACAAACGAACATGTTC--AAAGCGAAAAGTCT
gi|13321 : CAAAGTATTGCTAATATCCACTGTGCTA--TGGTCATC-ATGT-TATTAGTCTTGA-TGTCAG-GAGAA--GTT---GA-GACAAATCTC-GGTCTCGACTT--TAC-GGA--TA---CT---TCGAA-CATACTAGGTGCAATTTCAATTA-TCCATTTAAACATACGGAGC-ATTATC-A---A-T-AAATATGATGTTATTGCCTAAAAC--CTT-AC-TGATATTGACATAATGTGTTTTACTGAAACTCATATCA---ACAATTT---GGTA-C---C-TTCT-------GGC-GATTTAG---T---T---A-TTAATA-ACTTTG-ACGGATGTA---TCTATAGAGAAGATTGTACTTCTCATTC-GGGAGG----T-CTTTTAACTTACGCTT-----TAA--A-GAC-A-ATTATG---TC-A--AAAAGACG--CACGGATCTC-GAAAGC-ACTATAGTT-CATGTAATATGGG-TTTCAGA------TTTGTT-AC-------A--TA-T--CG---T----GTTTCTTT-T---AACTTCGTAATGTAAATCGTTCTACAAAT-ACACAGGT-TTGTTTTTGGGAA-AATTTA--AATATTTCTATCGA-ACGTGC----TTTCGA-----ATCTAATTCAAATATTGTTATTGTTGGTGATCTAAACAAAGATTAATTGAGCA---CAAG-----AGACT----GC---CA-ATTACGTAACA--TTATCATCATAAATAACATGAC-AAATGTTAC-CGAC-AAA-CCGAC----ACGAGAGACAGAT---A---C-CTCAGCAAT-C---TTACTTGATCCTATTATCATATCCGACA-GTATAC--------TACTTTTA-ACCTCTGACGTAA--TATACAT-TGATA--GAAG-AGTTAACGACCACAAAGC--TACACGCTTAACAATAAAGTTTCAC-AATTTCCAACAAATATGTTC--AAAGCGAAAAGTCT
gi|13322 : CAAAGTATTGTTTATATCCACTGTGTTA--TGGTCATC-CTGT-TTTTAGTCCTGA-TGTCGG-GAAA--------------CAATTACA-GGTCCCGACTT--TAC-GGA--TA---CC---TCTAA-CATATTAGATGCTAT----------CCATTTAAATTTACGGAGTTATTATC-C---A-T-AAATTTAATTATATTGTCCGAAAG--TTT-AC-TGGTATTGATATAATGTACTTCAATGAAACTCATCTTA---ACCATAT---GGTA-C---C-TTCT-------GGC-GATTTAG---T---T---A-TTGATA-TCTATC-ACGGATGTA---TCTATAGAGGAGATTTTACT-CTCATTC-GGGAGG----T-CTTTTGACTTACGTGT-----CAA--A-GAC-A-CTTTTG---TC-C--AAA-GACG--TACGGATCTC-AAAAGC-ACTGCAGTC-CATGCAATATGGG-T---AGA----GATTTTTTTAC-------A--AA-T--CG---T----CTTCCTAT-T---TACTTTTTAATGTATATCGTTCTCCAAAT-ACACCAGT-TTGTTTTTGGGGA-AAAAAT--AATATTTCTATCGT-ACGTGC----TTTCGA-----ATCAAATTCAAATATTATT---GTTGGTGATCTAAACCAAGATGTATTGAGCA---CAAA-----ATTTT----GC---CA-TTTGCGTAACA--TTATCGCCATAAAAACCATGAC-AAATGTGTT-CGAC-AAA-CCGAC----ACAAGTGACAGGT---A---A-CTCATCAAC-C---TTACTTGACCCTATTATCATATCCGA
gi|13323 : AAAGTATTTTAAACATAAGATTTACCA--TTGTAATTACT-T-TGTTAGTGCTCA-TGTCTG-GAGAT--GTA---GA-GTTAAATCCT-GGACCC---TT--CCC-AGAAATA----------GAC-CACACT--GT-CT--TTCATTTT-TACATTTAAACATACGTAG----TATC-CGAAA-C-AAACTAGAGTATATAAAGCAACAT--TTT-TT-GGACTTCGATATTATTTGTTTTACAGAATCTCAT-TTA---ACGACC----GATA-T---TACTGG-------GATTGATTAAG-----------A-CGGATA--CTCTG-A---AC-CA---TTT-CGTA-AAGATAACACTGCACACTC-TAGTGG----A-CTTCTAAGTTATATAT-----CTACTA-AGC----TTATG---TC-G--AAACGA-A--TGTTAATTTTAGAATGT-CCCTTTGTT-GATAGTATATGGG-T---AGA----GGTGAACT-ACGGGCGGGA--AA-----G------------CTTT-T---TACTTTGTAATGTGTATCGTCCTCCAAAT-ACGCCTGT-TTTATTTTGGAAC-TATTTC--AGTATAAGTATAGA-AAAAGC----ACTTGA--TCTATCCAA---AAATATTGTCATCGTCGGCGACATAAATGAAGATCAATTTAATA---TAAA-----TAATT----AT---CA-CTTAAAGAATG--TCATGCTTATCAATAACTTAAC-TAATGTTAT--AACTGAA-CCCAC----CAGAACAACGCGT---A---C-CTCATCAACTC---TTA-TTGACCCAATTATAATCTCAGACACATATAC--------CA-GTTTG-AATTCTGGC----------------ACA--AACGAAATAAGTGATCATCAAGC--TACA
gi|13324 : AAAGTGCTGTTAATTTA-AAT-TGTTAATTTATTATT--TGTATGTTTGTTTTTA-TGCTGGCGACATAGGTT--------CTAACCCT-GGTCCTG--TTAGTGC-AAA--CAATTCT---GCAAA-TATA---GGTGCTATATC-TTTAGTTCATCTGAAAATACGAAGT-ATCAGT-C---A-C-AAACTTAAGTTCATTTATGGCAAT--TTT-CT-TGACTTCAATGAAGTATGTTTTACAGAAACATATCTTG---ATGA--T---AATA-T---C-A-CG-------AAT-GATTCAA---T---TTC-ATTTGAAC-ATTTTA-AT---TGTAAACTTTATAGAAAAGACAGAAGTACTCACTCAGGGAGG----T--TGTTAACTTG----C-----CAG--ATGATGA-ACTTTGAGCTC--------GTCG--TTTTGACCTT-GAAAACGACAATA-TT-AATTTTATTTGGACT---AAACTCCGTTCAGTT-AC-------GTCAG-TTACG---T----CAGCTTCTGT---TA---TGTGACATATATCGTTTTCCGAAT-ACTGATGT-ATCTTTCTGAAAT-GACTTA--AACATTAATATAGA-ACATGC----CCTGGA--T--GTC-AACCCTAATATAGTTATCGTTCGCTATTTGAACCAGGTCTTACTGAACA---C-AA-----ATATC----ACA--TA-TCTACGGAATA--TCATGTGTTTTAATACTCTTTT-AAATATAAT--AAT-AAATCCGAT----ACATATTTCATAT---A---CTCTCATAGAC-A----TATTTTA----ATTA-CAGA-CGGAC-TG-ACAT--------CAC---TA-AATGTTGACACAA--TTGACGT-AGATAATAAC--AG-AAGTGACTACGAAGCAATTTGCTC---ATATTTAAATTTGACAGATTTC-AACAAACATGTTCTTAAAG
gi|13325 : GTATTGTCAATCTCCAATGTGCTA--TGGTCATC-CTGT-TATTAGTCTTGA-TGTCAG-GAGAT--GTT---GA-AACAACTCCC-GGTCGCGACTT--TAC-GGA--TA---CT---GCGAA-CATACTAGGTGCTATTTCAATTA-TCCATATAAATATAAGGAGC-ATTATC-C---A-T-AAATTTGATTTTATATCCCAAAAC--TTT-AC-TGATATTGACATAATGTGCTTTACTGAAACTCATCTTA---ACAACTT---GGTA-C---C-TTCT-------GAC-GATTTAG---T---T---C-TTGACA-ACTTTG-ACGGATGTA---TTTACAGAGAAGATTGTACTTCTCATTC-GGTAGG----T-CTTTTAACTTATGTTT-----CAA--A-GAC-A-AGTATG---TCAA--AAAAGACG--TACGGATCTC-GAAAAC-ACGGTAGTC-CATGCAATATGGG-T---AGA----GATTTGTT-AC-------A--AA-T--CG---T----CTTCCTTT-T---TACTTTATAATATATATCGTTCTCCAAAT-ACACTATT-TTGTTTTTGGGAA-AATTTT--GATATTTCTATCGA-ACGTGC----TTTCGA-----ATCAAATTCCAATATTGTTATTGTCGGTGATCTAAACCAAGATTTATCG-GCA---AAAC-----AGACT----GC---CA-CTTACGTAACA--TTATCATCATGAATAACATGAA-AAATATAAT-CGAT-AAG-CCGAC----ACGAGTGATAGAT---A---C-CTCAGCAAC-C---TTACATGACCCTACTATCATATCCGACA-ATATAC--------TACCTTTA-ACCTCTGACGTAA--TAGACAT-TGATA--GACG-AGTTAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
gi|13326 : AATTTACAA--TCGTTATT-ATGT-TGTTAGTGCTCT-TGTCTG-GGGAT--ATT---GCCGA-AAATCCA-GGTCT----TT--TATTAGA--AA---AT---AAGAG-CACAC--ACTG-TATTTCTATTC-TACATATTAATATCCGAAGT-ATTCGA-A---A-C-AAGTTTAATTACATAAAAAATAAT--TTT-AT-GGATTTTGATATACTTTGTTTTACTGAAACTCA-CTTA---AC
gi|13327 : T-TACTAGTTTTGA-TGTCAG-GCGAT--ATTTCCGA----AAATCCT-GG-----ACCG--TAT-GAA--AA---CTCAAATGAAATATGCAAAG-GCC-TTTCAATAG-CTCATTTAAATATTAGGAGC-AT--TCGC---A-CAAAACTAGATTACAT---CAAGGATTATTT-GCTTGATTTTGATATTCTATGCTTTACAGAGACCCACCTTACTGACGACATCAAGA-A-CAAAT-CTCTTTTACTGGAC-G-TT------T---T---A-TCCGGC-CCTTTG--CGACTG-----------GATAAGACTGCA-TTCTCA-----AGTGG----A-CTGTTGACTTATGTTT-----CAA--A-TA--A-ATTA-G---TT-GGTAAACGATT--GACATGTTTA-GACAAT-CCATCTGTT-GACTCAATCTAGA-C---AGA----GATTAAGT-AC-------A--CA-T--GA---A----CCACAGTA-A---TATTATGCAATGTGTATCGACCACCTAAT-TCAAATGT-TTCATTTTGGGAT-AATTTT--AATATTTCAATAGA-AATTGC----CCTTGA--T--AT-TAATAAAAATCTCGTTATTGTCGGTGACTTAAATG--------TTGA-CATTTTAAACCCTTATAGTCA--AC---CC-CTTA-ATAATA--TTATGTTTTTAAATAATCT-ACGCAATGTTAT-ATCC-GAA-CCTAC----CCGAATT-CAAAT----------TCAACGGC-CACATTGATAGATCCAATTATTAT
gi|13328 : T-TATTA----TAA-TGTCCG-GTAAC--GTG---GA-ATCAAATCCC-GATCCTCCTTC--TAC-GGAG-CA---TT----CGAA-TG-GCT---TG-TCTTT--ATT---TCATTTTAATATTCGCAGC-AT-ATG-A---AAC-AAATTAGAATTTATTAAAGATAAT--TTTCAA-T-ACTTTGATATTTTGTGTTTTACCGAAACACATCTTA---CTGAAAT---GGTA--------TAT-------GAT-GATATAT---TATAC---A-TTGATAGACATT---CTGATGTA---T--ATAGGAAGGATAGCACTGCGCATTC-CGGTTG----G-CTCCTCGTTTATGTTTAATTGCAA--A-GAG-A------G---TT-G--AAAAA------------CTA-GAAAAT-CCTCT-TTCAGACTCGATTTGGA-T---TGA--------AATA-AA-------A--AA-T--CAAAATAAAACT--ATTC-T---TA-TCTGTATCCTATACCGACAACCGAATGAC-CCTGT-ACAGTTTTGGGAT-GACTTA--AATATTAGAATCGATAAG-GC----CTTTGAACT--TTCAAA---CAGTGTTATTATTTTAGGTGATATAAACGAAGATCAATTGGCCG---CAAA-----TAATC----AT---CG-TTTGAAAGACA--TTTTGTTACTTAATAATTTGAC-CAATGTTAT-AAAT-GAG-CCCAC----ACGTGTAACAGACAGAA---C-GTCGACAG-------TAATAGACCCCATCGTTAT-TTCGA
gi|13329 : TACTTTTGAATGT-AG-GAGAC--ATA---GA-AAGCAATCCCAGG--CCGACAA---AC-G-A--TA---C--------A-CAT-----GTTCTAT--CGATTT-TATACTGTAATATTAGAAGT-ATTAGA-A---A-T-AAGATAAGTTTTATTGTTGAAAACCTTTT-A---GACCATGATATTCTTTGTTTTACTGAAAGGCACCTTG---ATAATCA---GAAA-C---C-AAAT-------GAC-TCTTTAATACT---T---A-ATGAAA-ACTTTG-AT--ATAT----TTTATAGAAAAGACCGTTCTAATCAT----GGAGGGGGATACTT---ATTTATGTTT-----CAA--A-
gi|13330 : ttattactccTTTCATTTT-TACATTTAAACATACGTAG----TATC-CGAAA-C-AAACTAAAGTATATAAAGCAACAT--TTT-TT-GGACTTCGATATTATTTGTTTTACAGAATCTTAT-TTA---AAGGCC----GATA-T---TACTGG-------GATTGATTTAG-----------A-CGGATA--CTCTGTAC-----CA---TTT-CGTA-AAGATAACACTGCACACTC-TAGTGG----A-CTTCTATGTTATATAT-----CTACTA-AGC----TTATG---TC-G--AAACGA-A--TGTTAATTTTAGAATGT-CCCTTTGTT-GATAGTATATTGG-T---AGA----GGTGAACT-AC-------G--GA-C--GG---T----AAAGCTTT-T---TACTTTGTAATGTGTATCGTCCTCCAAAT-ACACCTGT-TTCATTTTGG--A-ACTTTTTCAGTATAAGTATAGA-AAAAGC----TCTTGA--TCTATCCAA---AAATGTTGTCATCTTCGGCGACATCAATGAAGATCAATTAAATA---TAAA-----TAATT----AT---CA-CTTAAAGAATG--TCATGCTTATCAATAACTTAAC-TAATGTTGT-AAAT-GAA-CCCAC----CAGAACAACGCGT---A---C-GTCATCAACTC---TTA-TTGACACAATTATAATCTCAGACACATATAC--------CA-GTTTG-AATTCTG--GT-------AC-T-T--TA--GA---AATCAGTGATCATAAAGC--TACA
gi|13331 : TCA-TGCATCTAAATATCCGTAGC-ATAAGG-A---A-T-AAGCTCGAGTATGTCAAAGATAAT--TTC-CT-TGATTACGATGTTATCTGCTTCTCTGAAACTCAT-TTA---ACT-CAA---GATATT---T-CTC--------AAC-CATATA----T---TGAAA-TGAACA-ATTTTGAACAAA-ATA---TTTACCGTTAAGATAATACCGCCTATT------GA----T-C--------TACGTTT-----CGA--A-CTC-A-CTTATC---TC-A--AAACGTCA--TTTAGCACTC-GAAACA-ACGACAATT-GATCTTATTTGGA-T---CGA----AGTTAATT-TT-------A--AA-G--GG---G----AATAAATA-T---TAGTTTGTAATGTTTATCAACCAGGAAAT-TCACCAGT-TTCCTTCTGGAAA-GACTTA--AATATATCTATTGA-AAAAGC----TTTTGA-----ATATAATCCTAAAATTATCATTGTAGGAGATATTTATGAAGA-CTATTT---------AA-----ACGTTAGTAGCAAACA-ATTA--AAACATTTTATGATTAACAACAGCTTTAA-TAATGTAAT--AACAGAA-GCAAC----AAGAGTAACTGAT---AGGTC-CTC
gi|13332 : TTTTAATCTATGTTT-----CAA--A-T-C-ATCTCATT---TC-A--AAAAGAAGATTA--GATTTA-GAATGT-CCGTTAGTT-GATTCTGTTTGTG-T---TGA----AATCAAGC-AC-------A--AAAT--GG---A----CCGATTTT-TGTGTGCTTTGTA-----TACCGTTCCCCGAAC-ACGCCTGTAGCATTTTTG--AATAATTTT--AAAACATGTATTGA-AAAAGC----TCTTGA--TTTGTCAAA---AAATATAGTTTTAGTAGTCGATATTAACGAGGACCAATTAAATA---CTAA-----CAATA----AT---CATCTTA-GAAATA--CTATACTAATTAACAATCTGAC-AAATGTCAT-T-ACAGAA-CCAAC----CAGAGTAACTGAA---A---C-TACATCAAC-T---CTAATAGATCCAATACTTATATCAGATACATATA---------AACCTCTC-AATTCTG
gi|13333 : ATATGGG-T---AGA----GGTGAACT-ACGGGCGGGA--AA-----G------------CTTT-T---TACTTTGTAATGTGTATCGTCCTCCAAAT-ACGCCTGT-TTCATTTTGGAAC-TATTTC--AGTATAAGTATAGA-AAAAGC----ACTTGA--TCTATCCAA---AAATATTGTCATCGTCGGCGACGTAAATGAAGATCAATTTAATA---TAAA-----TAATT----AT---CA-CTTAAAGAATG--TCATGCTTATCAGTAACTTAAC-TAATGTTAT--AACTGAA-CCCACCAGAACAAGCG-----T---A---C-CTCATCAACTC---TTA-TTGACCCAATTATAATCTCAGACACATATAC--------CA-GTTTG-AATTCTG--GTAC--TTTACATGTCCCA--AACGAAATAAGTGATCATAAAGC--TACA
gi|13334 : CAGT-TTATTTTTGGGAA-AATGTT--AATATTTCTATCGA-ACGTGC----ATTCGA-----ATCTAATTCCAATATTGTTATTGCCGGTGATCTAAACCAAGACTTATTGAGCA---AAAG-----AGACT----GC---CA-CTTACGTAACA--TTATCATCATAAATAACATGAA-AAATATAAT-CGAC-AAA-CCGAC----ACGAGTGACAGAT---A---C-ATCAGCAAC-C---TTACTTGACCCTATTATCATATCCGACG-GTATAC--------TACCTTTA-ACCTCTGACGTAA--TAGACAT-TGATA--GACA-AGTAAGCGACCACAAAGC--TACACTCTTAATGAAAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCAAAAATTCT
gi|13335 : TCGTCGGCGACATAAATGAAGATCAATTAAATA---TCAA-----TAACT----AT---CA-CTTAAAGAATG--TCATGCTTATCAATAACTTAAC-TAATGTTATACAACAGAA-CCCAC----CAGAACAACACGT---A---C-GTCATCAACTC---TTA-TTGACTCAATTATAATCTCAGACACATATAC--------CA--GTTAGAATTCTG--GTACTTTAGATGT-C-CCA--AACGAAATCAGTGATCATAAAGC--TACA
gi|13336 : ATTAT-ATATCCGACA-ATATACAAATGTATTACCTTTA-ATCTCTGACGTAA--AAGACAT-TGAAA--GAAG-TGTTAGTAACCACAAAGC--TACACTATTAATAATAAAGTTTCAC-GATTTCCAGCAAACATGTGC---AAGCG
blockSeqs : C G AT AC A T A C TAG TGAGAC A T GA AG T AA ATTCTGC A TA A T A AG C G TT T CGAA CA T T TTCCC TTA GCT A T A G C CTG CATCAA CAAATCTCTTTTACTG T TTATAC T GA AACAA AAC C A G T T AG A GGGATA AATTG CT T GAA AGC GGT A CGCACG TA GA AG A AG G A C TTC CTCCGT T AAATCAAAATAAAACT G GTG G A A GT T TTC TTC C T CGT TCGT TCT A TTCC T C C T G TTTT CCCTTAT AGTAGCAAA T C T ATT TA A A GC A ACAACA T G CAGA T AGA GGT T G CACA A T C A AC AAATGTATTACC G T A TT GTC AT A A AA A A TT
blockSeqs : A G . C . C . . T TGAGAC . T GA . . G CTCAAAT . TA A T A A C G C T CGAA AC T T TGCCT CCT CAA A T A G A . CTT TTACTGG T ATACTT . A ACGG . C A G T T G A T . CT . ATC . AA A CGCACG TA A TA A C G A . . GG . GTCAGTTACGTCAGC . . . G . GT . T TTC C . CGT . ACT T TTCA T C A A G A AA CAAC . C T A CA A A A T CAAT . G . A . . . G TC C T C A AC TACC . C A . TG . A T . . C .
blockSeqs : A G . A . C . . A AGAGTT . T GA . . . CTGT . TA A T A A C G C T GC T T A TGTCC C AC A T A G C . TTT TTACTGG . ATTTC . A ACGG . C A G T G G A T . . . AA . G C CGTACG C A TG A C G A . . GA . AAAATGGACCGA . . . A . GT . A TTC C . CGT . TCT A TTCA C C C T G C AG ACA . C T A CG A A A G CGAC . G . T . . . T TC C T C A AC TACT . A G . TG . A A . . A .
blockSeqs : A T . C . G . . T TGAAAC . A GA . . . CTTC . TA A A A T A T T T C T A A AAAGC C AC T C T T C . TAT CCTTCT . TTGAA . T ACGG . T A A A A G T T . . . AA . A A CGTTTT C A CT T C A T . . GG . AAATCGTCTTT . . . T . TA . T AAG A . AAA . TTT C CCCT C A G A A C AT GC . A G A GC C T A T CGAC . C . C . . . T TC T A A C AC TACC . A A . AG . . A . . A .
blockSeqs : T G . C . T . . T TGCCGA . T CC . . . CCTC . AA A T T A T A C C A T T T TTATG G AC T C A A C . CTT CCTTCT . GTT . A ACGG . T A G A T T A A . . . AC . C C CGTACG C C AA A G T T . . GA . ATATCGTGTTT . . . T . CT . C TAA A . CAT . TCT A TTCC T T C T A T TA GC . C G G GT T C T A AACT . G . T . . . T TC C T C A AC AACC . C A . TG . . T . . C .
blockSeqs : C T . A . C . . T TTCCGA . T GA . . . CTGC . T A T A C C G T T C C T T ATCCC T TT A T A G C . AAT CCTTCT . GTT . A CGA . T A T T T G A T . . . AA . G A TTGACA T A GG A A G A . . GA . AAATCGTCTTC . . . A . GT . A TTC C . CGT . T T TAAA T C C T G C AT GC . C T A CA G A A A CGAT . G . T . . . G C A A C A A TACC . A A . TG . . C . . . .
blockSeqs : . . . . G . . T GGAATC . T G . . . ATAA . T C T G G A A C T C C T A AAAAA T CT T T A T C . TCA CCTTCT . GTT . C CTG . T A A T G C T T . . . AA . G C CATTTA C C AT T C T A . . GG . GGGCGGGAAAG . . . T . CA . T TTC A . ATT . T A TCCT T T G A C A AG AT . A T A GT A C A T ATCC . T . T . . . A C A C T C A CAG . A A . TG . . A .
blockSeqs : . T . . C AGAAAG . T A . . . TTC . . A T A T T G C T C T A A TAAAG C AC T T T A C . CAA CCAAAT . GTT . A TAC . T A A A A T T A . . . AC . G C AGATTA A C TC T G T G . . AG . AAATCGTCTTC . . . T . AG . T TAG C . AAA . . C TTCC C A G A A C TA GC . A A A GT T T C T AAAT . C . T . . . A A A A T A T CAC . A . . T . . A .
blockSeqs : . T . . C TC . . . . . . C . . . T . T T C T T A C A T TGTTG T AT T T T G C . CC TTTCTC . TT . A AT . T . T C G . A G . . . A . A A ATGTT A C CT A G A T . . AA . ACATGAACCAC . . . T . CA . A AAG A . AAA . . T A T A G T A T TA AT . A G A GC C T T T AAAT . C . C . . . T C C A A C A CAG . C . . C . . C .
blockSeqs : . . . . C . . . . . . . . . . . . A A A C A A T A T AAAGC T TT C T T T . . CC TCACG . G . . AT . . . . A G . T A . . . . . A . ATGTT C A GA A G C T . . GG . GGACGGTAAAG . . . A . CC . A ATC T . AAA . . A C A A G A A C AC AT . C A G GA C T T A AACA . A . T . . . T T . A T A G CAG . A . . . . . T .
blockSeqs : . . . A T . . A C A A CAAAG T CT T C T T . . T TAT . G . . A . . . . A . . . T . . . . . . . . A C GT . G T T . . . . AAAGGGGAATA . . . T . AT . T ATG T . AAA . . C A C A G A G T CA AT . A A A AC T C A C TACA . A . T . . . T C . T A C A CA . T
blockSeqs : . G T . . A T C A CA T A T C T C . . . . . . . . . GGGCGGGAAAG . . . T . CA . C AAG A . CGT . . T A T G G T A A TA AT . . G G GC C T T T AACT . C . C . . . G . . A C A
blockSeqs : A . AT . T TTC C . AG . . . A C C C A . T AG GC . . T A CA A A A A CGAC . G . T . . . T . . . A .
blockSeqs : . A G . . . TA AT . . G G GC C T T T AAT . C . C . . . .
blockSeqCons :
originalCons : CAAAGTATTGTCAATNTCCAATGTGCTA--TGGTCATC-CTGT-TATTAGTTTTGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGACTT--TAC-GGA--TA---CT---GCGAA-CATACTAGGTGCTATTTCAATTA-TNCATTTAAATATACGGAGC-ATTATC-C---A-C-AAACTNGATTNTATTNNCNAAAAC--TTT-AC-TGATNTCGATATNATGTGCTTTACTGAAACTCATCTTA---ACGACNT---GATA-C---C-CTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACTTTG-ACGGATGTA---TTTACAGAGAAGATNGTACTNCTCATTC-GGGAGG----T-CTTTTAACTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACG--TACGGATCTC-GAAAGC-ACNNTAGTC-GATNCNATATGGG-T---AGA----GGTTAGTT-AC-------A--AA-T--CG---T----CTTCCTTT-T---TACTTTGTAATGTATATCGTCCTCCAAAT-ACACCNGT-TTNTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGC----TCTCGA--T--ATCNAATTCNAATATTGTTATCGTCGGCGATNTAAACGAAGATCNATTGAGCA---NAAA-----ANATT----GC---CA-CTTACGNAACG--TTATGNTCATNAATAACNTGAC-NAATGTNAT-CGAC-GAA-CCGAC----ACGAGCGACAGAT---A---C-CTCANCAAC-C---TTACTTGACCCNATTATCATATCCGACACGTATAC--------CACCTTTA-ANTTCTGACGTAA--TAGACAT-TGATA--GACG-AGTNAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
finalCons : CAAAGTATTGTCAATNTCCAATGTGCTA--TGGTCATC-CTGT-TATTAGTTTTGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGACTT--TAC-GGA--TA---CT---GCGAA-CATACTAGGTGCTATTTCAATTA-TNCATTTAAATATACGGAGC-ATTATC-C---A-C-AAACTNGATTNTATTNNCNAAAAC--TTT-AC-TGATNTCGATATNATGTGCTTTACTGAAACTCATCTTA---ACGACNT---GATA-C---C-CTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACTTTG-ACGGATGTA---TTTACAGAGAAGATNGTACTNCTCATTC-GGGAGG----T-CTTTTAACTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACG--TACGGATCTC-GAAAGC-ACNNTAGTC-GATNCNATATGGG-T---AGA----GGTTAGTT-AC-------A--AA-T--CG---T----CTTCCTTT-T---TACTTTGTAATGTATATCGTCCTCCAAAT-ACACCNGT-TTNTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGC----TCTCGA--T--ATCNAATTCNAATATTGTTATCGTCGGCGATNTAAACGAAGATCNATTGAGCA---NAAA-----ANATT----GC---CA-CTTACGNAACG--TTATGNTCATNAATAACNTGAC-NAATGTNAT-CGAC-GAA-CCGAC----ACGAGCGACAGAT---A---C-CTCANCAAC-C---TTACTTGACCCNATTATCATATCCGACACGTATAC--------CACCTTTA-ANTTCTGACGTAA--TAGACAT-TGATA--GACG-AGTNAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
Alignments
lowQualScore : 1111111111 1111111111 11111 11111 111111 222222222222222222 111111111111 11111 1111 11111111 333333333333333333333333333333 33333 1111 111111111 111111 11111 1 11 111111111111 1
lowQualScore : 0 1 0 2 66 77 4 1 3 0 3 555 0000000000 3 2 33 55 3 88 7777777777 3 88 2 1 2 88 1 0 1 55 1 33333 444 0 1 0 1 11111 999 7777 1 1 1 2 0 3 555 0 111111 111111111111111111 6 888888888888 3 66 11111 555 2 1 6 1 4 77 1 999999 0 77777 88 3 0000 555 9999 5 00000000 66 44 22 1 55 1 1 0 3 555 888888 0 0 3 888888888888888888888888888888 3 555 0 3 0 1 2 22 2 444 111 1 2 444 6666 55555 3 4444 1 0 1 0 1 1 3 6666 8888888 111111111 2 8 1 555 22 0 1 1 0 33 1 777777 2 2 5555 2 444 444 2 1 22222 2 0 2 3 1 0 33 333333333333 3 1 5 55 0 0 444 55 0 1 55 5 4 77
lowQualScore : . . . . .. .. . . . . . ... .......... . . .. .. . .. .......... . .. . . . .. . . . .. . ..... ... . . . . ..... ... .... . . . . . . ... . ...... .................. . ............ . .. ..... ... . . . . . .. . ...... . ..... .. . .... ... .... . ........ .. .. .. . .. . . . . ... ...... . . . .............................. . ... . . . . . .. . ... ... . . ... .... ..... . .... . . . . . . . .... ....... ......... . . . ... .. . . . . .. . ...... . . .... . ... ... . . ..... . . . . . . .. ............ . . . .. . . ... .. . . .. . . ..
lowQualScore : 4 0 7 5 99 55 0 6 6 6 6 555 7777777777 6 3 44 00 6 66 7777777777 6 66 1 3 5 77 0 7 4 77 7 55555 888 5 0 4 0 22222 000 9999 0 1 0 1 2 5 444 8 888888 888888888888888888 7 555555555555 3 77 77777 888 1 2 5 0 2 99 7 999999 1 77777 55 1 9999 888 5555 1 77777777 99 33 00 6 11 0 0 8 1 444 666666 7 5 1 888888888888888888888888888888 1 444 8 1 2 0 9 22 9 555 333 2 9 999 1111 11111 8 9999 9 2 0 3 1 9 1 6666 9999999 666666666 7 3 0 444 11 8 0 0 9 77 0 999999 7 1 7777 3 777 777 7 0 99999 6 1 0 2 4 7 99 777777777777 3 0 7 00 1 4 222 00 9 0 00 7 9 99
consensus : CAAAGTATTGTCAATNTCCAATGTGCTA--TGGTCATC-CTGT-TATTAGTTTTGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGACTT--TAC-GGA--TA---CT---GCGAA-CATACTAGGTGCTATTTCAATTA-TNCATTTAAATATACGGAGC-ATTATC-C---A-C-AAACTNGATTNTATTNNCNAAAAC--TTT-AC-TGATNTCGATATNATGTGCTTTACTGAAACTCATCTTA---ACGACNT---GATA-C---C-CTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACTTTG-ACGGATGTA---TTTACAGAGAAGATNGTACTNCTCATTC-GGGAGG----T-CTTTTAACTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACG--TACGGATCTC-GAAAGC-ACNNTAGTC-GATNCNATATGGG-T---AGA----GGTTAGTT-AC-------A--AA-T--CG---T----CTTCCTTT-T---TACTTTGTAATGTATATCGTCCTCCAAAT-ACACCNGT-TTNTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGC----TCTCGA--T--ATCNAATTCNAATATTGTTATCGTCGGCGATNTAAACGAAGATCNATTGAGCA---NAAA-----ANATT----GC---CA-CTTACGNAACG--TTATGNTCATNAATAACNTGAC-NAATGTNAT-CGAC-GAA-CCGAC----ACGAGCGACAGAT---A---C-CTCANCAAC-C---TTACTTGACCCNATTATCATATCCGACACGTATAC--------CACCTTTA-ANTTCTGACGTAA--TAGACAT-TGATA--GACG-AGTNAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
Reference ( family-843 ) : CAAAGTATTGTCAATNTCCAATGTGCTA--TGGTCATC-CTGT-TATTAGTTTTGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGACTT--TAC-GGA--TA---CT---GCGAA-CATACTAGGTGCTATTTCAATTA-TNCATTTAAATATACGGAGC-ATTATC-C---A-C-AAACTNGATTNTATTNNCNAAAAC--TTT-AC-TGATNTCGATATNATGTGCTTTACTGAAACTCATCTTA---ACGACNT---GATA-C---C-CTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACTTTG-ACGGATGTA---TTTACAGAGAAGATNGTACTNCTCATTC-GGGAGG----T-CTTTTAACTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACG--TACGGATCTC-GAAAGC-ACNNTAGTC-GATNCNATATGGG-T---AGA----GGTTAGTT-AC-------A--AA-T--CG---T----CTTCCTTT-T---TACTTTGTAATGTATATCGTCCTCCAAAT-ACACCNGT-TTNTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGC----TCTCGA--T--ATCNAATTCNAATATTGTTATCGTCGGCGATNTAAACGAAGATCNATTGAGCA---NAAA-----ANATT----GC---CA-CTTACGNAACG--TTATGNTCATNAATAACNTGAC-NAATGTNAT-CGAC-GAA-CCGAC----ACGAGCGACAGAT---A---C-CTCANCAAC-C---TTACTTGACCCNATTATCATATCCGACACGTATAC--------CACCTTTA-ANTTCTGACGTAA--TAGACAT-TGATA--GACG-AGTNAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
gi|13319 : CAAAGTATTGTCAATCTCCAATGTGCTT--TGGTCATC-CTGT-AATTAGTTTTGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGATTT--TAC-GGA--TA---CT---GTGAA-CGTACTAGGTGCTATTTCAATTA-TCCTTTTAAATATAAGGAGC-ATTATC-C---A-T-AAATTTGATTTTATTTCCCAAAAC--TTT-AC-TGATATTGACATAATGTGCTTTACTGAAACTCATCTTA---ACAACTT---GGTA-C---C-CTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACTTTG-AGGGATGTA---TCTACAGAGAGGATTGTACTTCTCATTC-CGGAGG----T-CTTTTAGCTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACC--TACGGATCTC-GAAAGC-ACAGTAGTC-CATGCAATATGGG-T---AGA----GATTTGTT-AC-------A--AA-T--CG---T----CTTTCTTT-T---TACTTTGTAATATATATCGTTCTCCAAAT-ACACCAGT-TTGTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGC----TCTCGA-----ATCAAATTCCAATATTGCTATTGTCGGTGATCTCAACCAAGATTTATTGAGCA---AAAG-----AGACT----GC---CA-TTTACGTAACA--TTATCATCATAAATAACATGAA-AAATATAAT-CGAT-AAA-CCGAC----ACGAGTGACAGAT---A---C-CTCAGCAAC-C---TTACTTGACCCTATTATCATATCCGAC-TGTATAC--------TACCTTTA-ACCTCTGACGTAA--TAGACAT-TGATA--GACG-AGTTAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTACAAACAAACATGTTC--AAAGCGAAAAATCT
gi|13320 : CAAAGTATTGTCAATCTCCAATGTACTT--CGGTCATC-CTGT-TATTAGTTTCGA-TGTCAG-GAGAT--GTT---GA-GACAAATCCC-GGTCCCGACTT--TAC-GGA--TA---CT---GTGAA-CATACTAGGTGCTATTTCAATTA-TCCATTTAAATATAAGGGGC-ATTATC-C---A-T-AAATTTGATTTTATTTCCCAAAAC--TTT-AC-TGATATTGACATAATGTGCTTTACTGAAACTCATCTTA---ACAACTT---GATA-C---C-TTCT-------GAC-GATTTAG---T---T---A-TTGATA-ACATTG-ACGGATGTA---TCTACAGAGAGGATTGTACTTCTCATTC-GGGAGG----T-ATTTTAACTTATGTTT-----CAA--A-GAC-A-ATTATG---TC-G--AAAAGACG--CACGGATCTC-GAAAGC-ACAGTAGTC-CTAGCAATATGGG-T---AGA----GGTTAGTT-AC-------A--AA-T--CG---T----CTTTCTTT-T---TACTTTGTAATATATATCGTTCTCCAAAT-ACACCAGT-TTGTTTTTGGGAA-AATTTT--AATATTTCTATCGA-ACGTGCTCGTTCTCGA-----ATCAAATTCCAATATTGTTATTGTCGGTGATCTCAACCAAGATTTATTGAGAA---AAAT-----AAATT----GC---CA-CTTACGTAACA--TTATTATCATAAATAACATGAA-AAATATAAT-CAAT-AAA-CCGAC----ACGAGTGACAGAT---A---C-CTCAG-AA-------TAAT--ACCCTATTATCATATCCGACA-GTATAC--------TACCTTTA-ATTTCTGACGTAA--TAGACAT-TGATA--AACG-ATAAAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTACAAACGAACATGTTC--AAAGCGAAAAGTCT
gi|13321 : CAAAGTATTGCTAATATCCACTGTGCTA--TGGTCATC-ATGT-TATTAGTCTTGA-TGTCAG-GAGAA--GTT---GA-GACAAATCTC-GGTCTCGACTT--TAC-GGA--TA---CT---TCGAA-CATACTAGGTGCAATTTCAATTA-TCCATTTAAACATACGGAGC-ATTATC-A---A-T-AAATATGATGTTATTGCCTAAAAC--CTT-AC-TGATATTGACATAATGTGTTTTACTGAAACTCATATCA---ACAATTT---GGTA-C---C-TTCT-------GGC-GATTTAG---T---T---A-TTAATA-ACTTTG-ACGGATGTA---TCTATAGAGAAGATTGTACTTCTCATTC-GGGAGG----T-CTTTTAACTTACGCTT-----TAA--A-GAC-A-ATTATG---TC-A--AAAAGACG--CACGGATCTC-GAAAGC-ACTATAGTT-CATGTAATATGGG-TTTCAGA------TTTGTT-AC-------A--TA-T--CG---T----GTTTCTTT-T---AACTTCGTAATGTAAATCGTTCTACAAAT-ACACAGGT-TTGTTTTTGGGAA-AATTTA--AATATTTCTATCGA-ACGTGC----TTTCGA-----ATCTAATTCAAATATTGTTATTGTTGGTGATCTAAACAAAGATTAATTGAGCA---CAAG-----AGACT----GC---CA-ATTACGTAACA--TTATCATCATAAATAACATGAC-AAATGTTAC-CGAC-AAA-CCGAC----ACGAGAGACAGAT---A---C-CTCAGCAAT-C---TTACTTGATCCTATTATCATATCCGACA-GTATAC--------TACTTTTA-ACCTCTGACGTAA--TATACAT-TGATA--GAAG-AGTTAACGACCACAAAGC--TACACGCTTAACAATAAAGTTTCAC-AATTTCCAACAAATATGTTC--AAAGCGAAAAGTCT
gi|13322 : CAAAGTATTGTTTATATCCACTGTGTTA--TGGTCATC-CTGT-TTTTAGTCCTGA-TGTCGG-GAAA--------------CAATTACA-GGTCCCGACTT--TAC-GGA--TA---CC---TCTAA-CATATTAGATGCTAT----------CCATTTAAATTTACGGAGTTATTATC-C---A-T-AAATTTAATTATATTGTCCGAAAG--TTT-AC-TGGTATTGATATAATGTACTTCAATGAAACTCATCTTA---ACCATAT---GGTA-C---C-TTCT-------GGC-GATTTAG---T---T---A-TTGATA-TCTATC-ACGGATGTA---TCTATAGAGGAGATTTTACT-CTCATTC-GGGAGG----T-CTTTTGACTTACGTGT-----CAA--A-GAC-A-CTTTTG---TC-C--AAA-GACG--TACGGATCTC-AAAAGC-ACTGCAGTC-CATGCAATATGGG-T---AGA----GATTTTTTTAC-------A--AA-T--CG---T----CTTCCTAT-T---TACTTTTTAATGTATATCGTTCTCCAAAT-ACACCAGT-TTGTTTTTGGGGA-AAAAAT--AATATTTCTATCGT-ACGTGC----TTTCGA-----ATCAAATTCAAATATTATT---GTTGGTGATCTAAACCAAGATGTATTGAGCA---CAAA-----ATTTT----GC---CA-TTTGCGTAACA--TTATCGCCATAAAAACCATGAC-AAATGTGTT-CGAC-AAA-CCGAC----ACAAGTGACAGGT---A---A-CTCATCAAC-C---TTACTTGACCCTATTATCATATCCGA
gi|13323 : AAAGTATTTTAAACATAAGATTTACCA--TTGTAATTACT-T-TGTTAGTGCTCA-TGTCTG-GAGAT--GTA---GA-GTTAAATCCT-GGACCC---TT--CCC-AGAAATA----------GAC-CACACT--GT-CT--TTCATTTT-TACATTTAAACATACGTAG----TATC-CGAAA-C-AAACTAGAGTATATAAAGCAACAT--TTT-TT-GGACTTCGATATTATTTGTTTTACAGAATCTCAT-TTA---ACGACC----GATA-T---TACTGG-------GATTGATTAAG-----------A-CGGATA--CTCTG-A---AC-CA---TTT-CGTA-AAGATAACACTGCACACTC-TAGTGG----A-CTTCTAAGTTATATAT-----CTACTA-AGC----TTATG---TC-G--AAACGA-A--TGTTAATTTTAGAATGT-CCCTTTGTT-GATAGTATATGGG-T---AGA----GGTGAACT-ACGGGCGGGA--AA-----G------------CTTT-T---TACTTTGTAATGTGTATCGTCCTCCAAAT-ACGCCTGT-TTTATTTTGGAAC-TATTTC--AGTATAAGTATAGA-AAAAGC----ACTTGA--TCTATCCAA---AAATATTGTCATCGTCGGCGACATAAATGAAGATCAATTTAATA---TAAA-----TAATT----AT---CA-CTTAAAGAATG--TCATGCTTATCAATAACTTAAC-TAATGTTAT--AACTGAA-CCCAC----CAGAACAACGCGT---A---C-CTCATCAACTC---TTA-TTGACCCAATTATAATCTCAGACACATATAC--------CA-GTTTG-AATTCTGGC----------------ACA--AACGAAATAAGTGATCATCAAGC--TACA
gi|13324 : AAAGTGCTGTTAATTTA-AAT-TGTTAATTTATTATT--TGTATGTTTGTTTTTA-TGCTGGCGACATAGGTT--------CTAACCCT-GGTCCTG--TTAGTGC-AAA--CAATTCT---GCAAA-TATA---GGTGCTATATC-TTTAGTTCATCTGAAAATACGAAGT-ATCAGT-C---A-C-AAACTTAAGTTCATTTATGGCAAT--TTT-CT-TGACTTCAATGAAGTATGTTTTACAGAAACATATCTTG---ATGA--T---AATA-T---C-A-CG-------AAT-GATTCAA---T---TTC-ATTTGAAC-ATTTTA-AT---TGTAAACTTTATAGAAAAGACAGAAGTACTCACTCAGGGAGG----T--TGTTAACTTG----C-----CAG--ATGATGA-ACTTTGAGCTC--------GTCG--TTTTGACCTT-GAAAACGACAATA-TT-AATTTTATTTGGACT---AAACTCCGTTCAGTT-AC-------GTCAG-TTACG---T----CAGCTTCTGT---TA---TGTGACATATATCGTTTTCCGAAT-ACTGATGT-ATCTTTCTGAAAT-GACTTA--AACATTAATATAGA-ACATGC----CCTGGA--T--GTC-AACCCTAATATAGTTATCGTTCGCTATTTGAACCAGGTCTTACTGAACA---C-AA-----ATATC----ACA--TA-TCTACGGAATA--TCATGTGTTTTAATACTCTTTT-AAATATAAT--AAT-AAATCCGAT----ACATATTTCATAT---A---CTCTCATAGAC-A----TATTTTA----ATTA-CAGA-CGGAC-TG-ACAT--------CAC---TA-AATGTTGACACAA--TTGACGT-AGATAATAAC--AG-AAGTGACTACGAAGCAATTTGCTC---ATATTTAAATTTGACAGATTTC-AACAAACATGTTCTTAAAG
gi|13325 : GTATTGTCAATCTCCAATGTGCTA--TGGTCATC-CTGT-TATTAGTCTTGA-TGTCAG-GAGAT--GTT---GA-AACAACTCCC-GGTCGCGACTT--TAC-GGA--TA---CT---GCGAA-CATACTAGGTGCTATTTCAATTA-TCCATATAAATATAAGGAGC-ATTATC-C---A-T-AAATTTGATTTTATATCCCAAAAC--TTT-AC-TGATATTGACATAATGTGCTTTACTGAAACTCATCTTA---ACAACTT---GGTA-C---C-TTCT-------GAC-GATTTAG---T---T---C-TTGACA-ACTTTG-ACGGATGTA---TTTACAGAGAAGATTGTACTTCTCATTC-GGTAGG----T-CTTTTAACTTATGTTT-----CAA--A-GAC-A-AGTATG---TCAA--AAAAGACG--TACGGATCTC-GAAAAC-ACGGTAGTC-CATGCAATATGGG-T---AGA----GATTTGTT-AC-------A--AA-T--CG---T----CTTCCTTT-T---TACTTTATAATATATATCGTTCTCCAAAT-ACACTATT-TTGTTTTTGGGAA-AATTTT--GATATTTCTATCGA-ACGTGC----TTTCGA-----ATCAAATTCCAATATTGTTATTGTCGGTGATCTAAACCAAGATTTATCG-GCA---AAAC-----AGACT----GC---CA-CTTACGTAACA--TTATCATCATGAATAACATGAA-AAATATAAT-CGAT-AAG-CCGAC----ACGAGTGATAGAT---A---C-CTCAGCAAC-C---TTACATGACCCTACTATCATATCCGACA-ATATAC--------TACCTTTA-ACCTCTGACGTAA--TAGACAT-TGATA--GACG-AGTTAGCGACCACAAAGC--TACACTCTTAATAATAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCGAAAAGTCT
gi|13326 : AATTTACAA--TCGTTATT-ATGT-TGTTAGTGCTCT-TGTCTG-GGGAT--ATT---GCCGA-AAATCCA-GGTCT----TT--TATTAGA--AA---AT---AAGAG-CACAC--ACTG-TATTTCTATTC-TACATATTAATATCCGAAGT-ATTCGA-A---A-C-AAGTTTAATTACATAAAAAATAAT--TTT-AT-GGATTTTGATATACTTTGTTTTACTGAAACTCA-CTTA---AC
gi|13327 : T-TACTAGTTTTGA-TGTCAG-GCGAT--ATTTCCGA----AAATCCT-GG-----ACCG--TAT-GAA--AA---CTCAAATGAAATATGCAAAG-GCC-TTTCAATAG-CTCATTTAAATATTAGGAGC-AT--TCGC---A-CAAAACTAGATTACAT---CAAGGATTATTT-GCTTGATTTTGATATTCTATGCTTTACAGAGACCCACCTTACTGACGACATCAAGA-A-CAAAT-CTCTTTTACTGGAC-G-TT------T---T---A-TCCGGC-CCTTTG--CGACTG-----------GATAAGACTGCA-TTCTCA-----AGTGG----A-CTGTTGACTTATGTTT-----CAA--A-TA--A-ATTA-G---TT-GGTAAACGATT--GACATGTTTA-GACAAT-CCATCTGTT-GACTCAATCTAGA-C---AGA----GATTAAGT-AC-------A--CA-T--GA---A----CCACAGTA-A---TATTATGCAATGTGTATCGACCACCTAAT-TCAAATGT-TTCATTTTGGGAT-AATTTT--AATATTTCAATAGA-AATTGC----CCTTGA--T--AT-TAATAAAAATCTCGTTATTGTCGGTGACTTAAATG--------TTGA-CATTTTAAACCCTTATAGTCA--AC---CC-CTTA-ATAATA--TTATGTTTTTAAATAATCT-ACGCAATGTTAT-ATCC-GAA-CCTAC----CCGAATT-CAAAT----------TCAACGGC-CACATTGATAGATCCAATTATTAT
gi|13328 : T-TATTA----TAA-TGTCCG-GTAAC--GTG---GA-ATCAAATCCC-GATCCTCCTTC--TAC-GGAG-CA---TT----CGAA-TG-GCT---TG-TCTTT--ATT---TCATTTTAATATTCGCAGC-AT-ATG-A---AAC-AAATTAGAATTTATTAAAGATAAT--TTTCAA-T-ACTTTGATATTTTGTGTTTTACCGAAACACATCTTA---CTGAAAT---GGTA--------TAT-------GAT-GATATAT---TATAC---A-TTGATAGACATT---CTGATGTA---T--ATAGGAAGGATAGCACTGCGCATTC-CGGTTG----G-CTCCTCGTTTATGTTTAATTGCAA--A-GAG-A------G---TT-G--AAAAA------------CTA-GAAAAT-CCTCT-TTCAGACTCGATTTGGA-T---TGA--------AATA-AA-------A--AA-T--CAAAATAAAACT--ATTC-T---TA-TCTGTATCCTATACCGACAACCGAATGAC-CCTGT-ACAGTTTTGGGAT-GACTTA--AATATTAGAATCGATAAG-GC----CTTTGAACT--TTCAAA---CAGTGTTATTATTTTAGGTGATATAAACGAAGATCAATTGGCCG---CAAA-----TAATC----AT---CG-TTTGAAAGACA--TTTTGTTACTTAATAATTTGAC-CAATGTTAT-AAAT-GAG-CCCAC----ACGTGTAACAGACAGAA---C-GTCGACAG-------TAATAGACCCCATCGTTAT-TTCGA
gi|13329 : TACTTTTGAATGT-AG-GAGAC--ATA---GA-AAGCAATCCCAGG--CCGACAA---AC-G-A--TA---C--------A-CAT-----GTTCTAT--CGATTT-TATACTGTAATATTAGAAGT-ATTAGA-A---A-T-AAGATAAGTTTTATTGTTGAAAACCTTTT-A---GACCATGATATTCTTTGTTTTACTGAAAGGCACCTTG---ATAATCA---GAAA-C---C-AAAT-------GAC-TCTTTAATACT---T---A-ATGAAA-ACTTTG-AT--ATAT----TTTATAGAAAAGACCGTTCTAATCAT----GGAGGGGGATACTT---ATTTATGTTT-----CAA--A-
gi|13330 : ttattactccTTTCATTTT-TACATTTAAACATACGTAG----TATC-CGAAA-C-AAACTAAAGTATATAAAGCAACAT--TTT-TT-GGACTTCGATATTATTTGTTTTACAGAATCTTAT-TTA---AAGGCC----GATA-T---TACTGG-------GATTGATTTAG-----------A-CGGATA--CTCTGTAC-----CA---TTT-CGTA-AAGATAACACTGCACACTC-TAGTGG----A-CTTCTATGTTATATAT-----CTACTA-AGC----TTATG---TC-G--AAACGA-A--TGTTAATTTTAGAATGT-CCCTTTGTT-GATAGTATATTGG-T---AGA----GGTGAACT-AC-------G--GA-C--GG---T----AAAGCTTT-T---TACTTTGTAATGTGTATCGTCCTCCAAAT-ACACCTGT-TTCATTTTGG--A-ACTTTTTCAGTATAAGTATAGA-AAAAGC----TCTTGA--TCTATCCAA---AAATGTTGTCATCTTCGGCGACATCAATGAAGATCAATTAAATA---TAAA-----TAATT----AT---CA-CTTAAAGAATG--TCATGCTTATCAATAACTTAAC-TAATGTTGT-AAAT-GAA-CCCAC----CAGAACAACGCGT---A---C-GTCATCAACTC---TTA-TTGACACAATTATAATCTCAGACACATATAC--------CA-GTTTG-AATTCTG--GT-------AC-T-T--TA--GA---AATCAGTGATCATAAAGC--TACA
gi|13331 : TCA-TGCATCTAAATATCCGTAGC-ATAAGG-A---A-T-AAGCTCGAGTATGTCAAAGATAAT--TTC-CT-TGATTACGATGTTATCTGCTTCTCTGAAACTCAT-TTA---ACT-CAA---GATATT---T-CTC--------AAC-CATATA----T---TGAAA-TGAACA-ATTTTGAACAAA-ATA---TTTACCGTTAAGATAATACCGCCTATT------GA----T-C--------TACGTTT-----CGA--A-CTC-A-CTTATC---TC-A--AAACGTCA--TTTAGCACTC-GAAACA-ACGACAATT-GATCTTATTTGGA-T---CGA----AGTTAATT-TT-------A--AA-G--GG---G----AATAAATA-T---TAGTTTGTAATGTTTATCAACCAGGAAAT-TCACCAGT-TTCCTTCTGGAAA-GACTTA--AATATATCTATTGA-AAAAGC----TTTTGA-----ATATAATCCTAAAATTATCATTGTAGGAGATATTTATGAAGA-CTATTT---------AA-----ACGTTAGTAGCAAACA-ATTA--AAACATTTTATGATTAACAACAGCTTTAA-TAATGTAAT--AACAGAA-GCAAC----AAGAGTAACTGAT---AGGTC-CTC
gi|13332 : TTTTAATCTATGTTT-----CAA--A-T-C-ATCTCATT---TC-A--AAAAGAAGATTA--GATTTA-GAATGT-CCGTTAGTT-GATTCTGTTTGTG-T---TGA----AATCAAGC-AC-------A--AAAT--GG---A----CCGATTTT-TGTGTGCTTTGTA-----TACCGTTCCCCGAAC-ACGCCTGTAGCATTTTTG--AATAATTTT--AAAACATGTATTGA-AAAAGC----TCTTGA--TTTGTCAAA---AAATATAGTTTTAGTAGTCGATATTAACGAGGACCAATTAAATA---CTAA-----CAATA----AT---CATCTTA-GAAATA--CTATACTAATTAACAATCTGAC-AAATGTCAT-T-ACAGAA-CCAAC----CAGAGTAACTGAA---A---C-TACATCAAC-T---CTAATAGATCCAATACTTATATCAGATACATATA---------AACCTCTC-AATTCTG
gi|13333 : ATATGGG-T---AGA----GGTGAACT-ACGGGCGGGA--AA-----G------------CTTT-T---TACTTTGTAATGTGTATCGTCCTCCAAAT-ACGCCTGT-TTCATTTTGGAAC-TATTTC--AGTATAAGTATAGA-AAAAGC----ACTTGA--TCTATCCAA---AAATATTGTCATCGTCGGCGACGTAAATGAAGATCAATTTAATA---TAAA-----TAATT----AT---CA-CTTAAAGAATG--TCATGCTTATCAGTAACTTAAC-TAATGTTAT--AACTGAA-CCCACCAGAACAAGCG-----T---A---C-CTCATCAACTC---TTA-TTGACCCAATTATAATCTCAGACACATATAC--------CA-GTTTG-AATTCTG--GTAC--TTTACATGTCCCA--AACGAAATAAGTGATCATAAAGC--TACA
gi|13334 : CAGT-TTATTTTTGGGAA-AATGTT--AATATTTCTATCGA-ACGTGC----ATTCGA-----ATCTAATTCCAATATTGTTATTGCCGGTGATCTAAACCAAGACTTATTGAGCA---AAAG-----AGACT----GC---CA-CTTACGTAACA--TTATCATCATAAATAACATGAA-AAATATAAT-CGAC-AAA-CCGAC----ACGAGTGACAGAT---A---C-ATCAGCAAC-C---TTACTTGACCCTATTATCATATCCGACG-GTATAC--------TACCTTTA-ACCTCTGACGTAA--TAGACAT-TGATA--GACA-AGTAAGCGACCACAAAGC--TACACTCTTAATGAAAAAGTTTCAC-GATTTCAAACAAACATGTTC--AAAGCAAAAATTCT
gi|13335 : TCGTCGGCGACATAAATGAAGATCAATTAAATA---TCAA-----TAACT----AT---CA-CTTAAAGAATG--TCATGCTTATCAATAACTTAAC-TAATGTTATACAACAGAA-CCCAC----CAGAACAACACGT---A---C-GTCATCAACTC---TTA-TTGACTCAATTATAATCTCAGACACATATAC--------CA--GTTAGAATTCTG--GTACTTTAGATGT-C-CCA--AACGAAATCAGTGATCATAAAGC--TACA
gi|13336 : ATTAT-ATATCCGACA-ATATACAAATGTATTACCTTTA-ATCTCTGACGTAA--AAGACAT-TGAAA--GAAG-TGTTAGTAACCACAAAGC--TACACTATTAATAATAAAGTTTCAC-GATTTCCAGCAAACATGTGC---AAGCG