lowQualScore : 222222 111111 1111 1111111 1 111 1 111 1 1 11111111111111111 11 11 111111111111 111111
lowQualScore : 7 2 000000 444 444 2 555555 22 2222 44 6666666 7 2 8 1 44 4 9999 7 3 1 2 444 1 1 333 0 8 2 0 0 88888888888888888 55 55 77 55 22 55 555555555555 4 222222 5 666666 0 33 2 88 3 444
lowQualScore : . . ...... ... ... . ...... .. .... .. ....... . . . . .. . .... . . . . ... . . ... . . . . . ................. .. .. .. .. .. .. ............ . ...... . ...... . .. . .. . ...
lowQualScore : 2 4 888888 111 666 4 999999 44 4444 55 3333333 0 4 9 7 88 1 6666 1 1 5 4 222 9 8 888 2 5 4 1 7 77777777777777777 88 66 77 22 99 66 999999999999 9 000000 2 888888 8 22 4 99 5 111
consensus : ACTATAAAGANAAA-A--TAA-AAA---AATTA-AA-AANCT--AAT-CA----AACTNTGG-AAA-C-GNA-GATNTCT-GACNCCA-NTNGGNAAAATAACTGTCATCAA-AACNTTATTATTACCAAC-N-TTAAACCATCTNTTTATTTC-ACTNCCAAATCCA---AA--NGA--CA-A-TATA-ATT--AAA-NANNTAA--AT--A-TGA----TT--TTNTA--CGANTTTNTAT------GGAA--A-GGN-CCCGCAAAAA---TAAAAA
Reference ( gi|154652 ) : ACTATAAAGACAAA-A--TAATAAA---AATTA-AA-AAGCT--AAT-CA----AACTCTGG-CAA-T-GCA-GATGTAT-GACACCA-CTGGGTAAAATAACTGTCATCAA-ATCTTTATTAATACCAAT-A-TTAAACCATCTATTTATTTC-ACTACCTAATCCA---AA--TGA--TA-A-TATA-ATT--AAA-GATTTAA--AT--A-TGA----TT--TTCTA--TGATTTTTTAT------GGAA--A-GGC-CCCGCAAAAA---TAAAAA
gi|154653 : ACTATAAAGACAAA-A--TAATAAA---AATTA-AA-AAGCT--AAT-AA----AACGCTGG-CAA-T-GCA-GATGTAT-GACACCA-CTTGGTAAAATAACTGTCATCAA-ATTTTTATTACTATCAAT-G-TTAAACCATCTATTCATTTC-ACTACCTAATCCA---AA--TGA--TA-A-TATA-ATT--AAA-GATTTAA--AT--A-TGA----TT--TTCTA--TGAATTTCTAT------GGAA--A-GGC-CCTGCAAAAA---TAAAAA
gi|154654 : ACTATAAAGACAAA-A------------AATTA-AA-AAGCT--AAT-CA----AACTCTGG-TAA-T-GCA-GATGTAT-GACACAA-CTTGGTAAAATAACTGTCATCAA-ATCTTTACTACTACCAAT-A-TTAAACCATCTATTCATTTC-ACTACCTAATCCA---AA--CGG--TA-A-TATA-ATT--AAA-GATTTAA--AT--A-TGA----TT--TTCTA--AGAATTTTTAT------GGAA--A-GGT-CCCGCAAAAAAACCAAAAA
gi|154655 : ATTATAAAAAGAAA-A----A-AAA---AATT-------TTT--TTT-TA----AACTCTGG-CTA-T-GCA-GATATAC-GACGCCA-CTTGGTAAAATAACTGTCATCAG-ATCTTTATTACTACAAAT-G-TTAAACAATCTATTCAGTTT-ACTACCTAATCCA---AA--TGA--TG-A-TATA-ATT--AAA-TATTTAA--AT--A-CGA----TT--TTCTA----A--------------GGAA--A-GGC-ACTGCAAAAA---TGAAAA
gi|154656 : ACTATAAAGACAAA-A--TATCAAA---AATTC-AA-AACCT--TAT-TA----AACTATGG-AAA-C-GTA-GATTTTT-AACTCCA-CTAGGTAAAATAACTGTCATCAA-AACATTATTGTTACCAAC-C-CTTAACCATTTGTTTATTTC-AATTCCAAACCCA---TG--TGAGTTA----ACC-ATTA-AAA-AAATTAATGAT--A-TG---------TTTTA--TGATTTTTTAT------GGGC--A-GGA-CCAGCAAAAA---TAAAAA
gi|154657 : ACTATAAAGACAAA-A--TAGCAAA---AATTT-AA-AACCT--TAT-TA----GACTATTG-AAA-C-GTA-GATTTTT-AACTCCA-CTAGGTAAAATAACTGTCATCAA-AACATTATTGTTACCAATCC-TTAAA-CATTTGTTTAATTC-AATTCTAAACCCATGTAAGTTGA--CC-A-T-TA-A----AAA-AA-TTAATGAT--A-TG---------TTTTA--TGATATTTTAT------GGGC--A-GGA-CCAGCAAAAA---TAAAAA
gi|154658 : ACTACACAGAGAAG-A--TAAGGAA---AATAC-AA-AACTT--AAT-AA----CACTATGG-AAA-T-GAA-GATATTT-AATACCAGTTGGGAAAAATA-CAGTTATAAA-ATTATTGCTTTTACCAGT-T-TTAAATCATCTATTTATCTC-ATTTCCTAATCCA---AA--AGA--CG-A-AGTA-ATC--AAA-GATATAG--AT--A---A----TCTATTTTA--TAACTTTCTCT------GGAATGATGGC-CCTGCAAAAA---TCAAA
gi|154660 : ATTATAAAGA-AAA-----AATAAA---TATTATAA-AATCTAAAAT-TA----AAGAATGGTCAA---GAA-GATATCT-GACTCCA-TTAGGAAAAATCACTGTTATAAA-AAGTTTGCTATTGCCTAT-T-TTGAATCATATATTTGTAGC-ATTACCAAATCCT---AA--TGA--AA-A-TGTA-ATC--AAA-GAAATAA--AT--T-CAA----TT--TTTTA--CGATTTCATAT------GG----G-GGCGACAGCCAAAA---TAAAA
gi|154661 : ATTACAAACAAAAG-A--TAG-AAA---AATTA-AAGAAATC--AAT-CA----GTCATTGG-AAAAG-GCA--ACATTT-AACTCCA-CTAGGGAGAATAACTGTAATCAA-AACATTGCTAATACCAGC-T-TTTAACCATCT-TTTATATC-ACTACC-AAACCA--------GA--CA-T-TA-A-ATTTGAAA-GATATAA--ACAAA-TAA--------CTGTA--TGATTTTTTTT------TGCA--A-GGG-CCAGCAAAAA---TTAAAA
gi|154659 : ATTACAGTGAGAAA-A--TAACAAATATAGTTA-AA----CT--GAT-AA----AACTTTGG-AAG-A-GAA-GATATCG-GACTCCA-TAAGGGAAAATCACAGTTATAAT-ATCACTGCTTCTATCAAT-G-TTAAATCATCTCTTTATTTC-TCTTCCAAATCCA---AA--TGA--AA-C-CATT-ATT--AAA-AA-CTAA--AT--A-GCA----TA--TGTTA--TGAGTTTCTTT------GCGA--A-GGT-CCAGCAAAAA---TAAAGA
gi|154662 : ATTATAATGAAAAA-A--TAGAAAA---AATCA-AA-AACTC--AAT-CG----GATTTTGG--AA-T-GGAAGATTTTTTAACTCCA-ACAGGAAAAATAACTGTAATAAA-AAGTTTATTAATTCCGTC-A-CTTAACCATCTTTTTTTTCT-ATT-CCAAGTCCA---GA--GGA--CA-ATTAT--ATC--AAG-CAAATAA--AT--A-ACA----TT--TTATA--CAAATTTCTTT------GGCA--T-GGA-CCTGCAAAAA---TTAAAA
gi|154663 : CTATAAAGACAAA-A--TATCAAA---ATTTC-AA-AACCT--TAT-TT----AACTAGGG-AAA-C-GTA-GATTTTT-AACTCCA-ATAGGTAAAATAACTGTCATCAA-AACACTATTGTTAACAAC-C-CTTAACCATATGTTTATTTC-AATTCCAAACCCA---TG--TGGGTTA----ACC-ATT--AAA-AACATGA--ATG-A-T-A----CG--TTTTA--TGA-TTTTTAT------GGAC--A-GGA-CCAGCAAAAA---TAAAAA
gi|154664 : TAAAGACAAATA--TAAAAAC---AAT-G-AA-AAGCT--TAT-CA----AACTCTGG-CAG-T-GAA-GATATTT-GACACCA-GTTGTTAAAAAAAC-----TTAC-ATATTTAGTTTTACC-AC-A-TTAAACCATCTACTCATTTC-ACTAGTTAATCC----AA--TGA--TA-G-TATA-TTT--AAA-GATTTAA--GA--A-TAA----TT--ATCTATTTTATTTTCTATTCTTAAAGAA--T-GGC-CCCG--AAAA---TGAAA
gi|154665 : TAAGGAAAAA-AC-TGA-AAA---AATCA-AA-AA------AT-CATTGCAATACTGG-AAC-A-GAA-GGTTTCT-TACACCA-ATTGGGAAAATCACAGTCATTAA-AAGCTTATTATTACCATC-C-TTAAACCATATTTTTATTTC-TCTCCCAAACCCG---CC--AGA--CA-CCTATA--TT--AAACAAATTAATGAC--A-TG-----TT--TTATA--CG--TTCATAT------GGAA--A-GGA-TCCGCAAAGA---TAAAAA
gi|154667 : TAAGGAAAAA-AC-TGA-AAA---AATCA-AA-AAGTC--ATTGCA----A--TATAG-GAA-CAGAA-GGTTTCT-TACACCA-ATTGGGAAAATCACAGTCATTAA-AAGCTTATTATTAC-AAT-CCTTAAACCATAGTTTTATTTC-TCTCCCAAAACCG---CC--AGA--CA-CCTATA--TT--AAA-CA---AA--AT--AATGACATGTT--TTATA--CG--TTCATAT------GGAA--A-GGA-TCCGCAAAGA---TAAAAA
gi|154668 : TAAGGAAAAA-AACTGA-AAA---AATCA-AA-AA------AT-CATTGCAATATTGG--AA-TAGAA-GATTTCT-TACAACA-ATTCGGAAAATCACAGTCAATAA-AAGCTTATTATTACCATC-C-TTAAACCATATTTTTATTTC-TCTCCCAAGCCCA-------CCA--TACA-CCTATATT--AAA-CAAATAA--AT--G-ACA----TG--TTTTA--TACCTTCATAT------GGAA--A-GGA-TCCGCAAAGA---TAAAAA
gi|154666 : AAAAAAAAA-A--AAATAAA---AA-------AAGC----AT-TGC---AATATTGG-AAC-A-GTA-GGTTTCT-TACACCA-ATTGG-AAAATCGCAGTCATTAACAGCTT-ATTATTACCA-T-ACTTAAACCAATT-TTTATTTC-TCTCCCAAACCCG---CC--AGA--CA-C-T-TATATT--AAACAAATTAATGAT--A-TG-----TT--TTACA--CG--TTCGTAT------GGAA--A-GGA-TCCGCAAAGA---TAAAAA
gi|154669 : taaaA-A--TGA-AAA---AGTTA-AA-AACTC--AAT-CG----GCTTTTGG--AA-TAGAA-GATTTTT-AACTCCA-ATAGGAAAAATAACTGTAATTAA-AAAATTATTAATTCCGTC-A-CTTAACCATCTTTTTATTTCTATT-CCAAGTCCA---GA--GGA--CA-ATTAT--ATC--AAG-CAAATAA--AT--G-ACA----TT--TTTAA--CAAATTTCTTT------GGCA--T-GGA-CCTGCAAAAA---TTAAAA
Alignments
lowQualScore : 1111111 11111111 11111 222222222
lowQualScore : 1 2 5555555 333 555 2 1 33 6 2 3 0 99 1 1 2 44 1 1 1 3 0 2 444 0 444 3 0 3 1 1 0 11111111 22222 666 33 55 22 2 99 222222222 1 777777 1 666666 0 33 2 1 33 2 333
lowQualScore : . . ....... ... ... . . .. . . . . .. . . . .. . . . . . . ... . ... . . . . . . ........ ..... ... .. .. .. . .. ......... . ...... . ...... . .. . . .. . ...
lowQualScore : 0 2 1111111 999 333 2 8 11 7 2 2 9 55 0 0 7 00 0 0 0 2 4 8 999 1 333 2 1 2 1 0 2 77777777 11111 111 11 44 00 2 22 333333333 8 777777 0 444444 2 11 2 0 11 8 999
consensus : ACTATAAAGANAAA-A--TA-A-AAA---AATT-A-AA-AANCTAA--T-CAA-ACTNTGGAAAN-GNAGATNTCT-GACNCCANTNGGNAAAATAACTGTCATCAAAACNTTATTATTACCA-A-CNTTAAACCATCTNTTTATTTCACTNCCAAATCCA---AA--NGACA-AT--ATA-ATT--AAA-GANAT-AA--AT---A--TGATTTTNTA--CGANTTTCTAT------GGAA--A-GGNC--CCGCAAAAA---TAAAAA
Reference ( family-841 ) : ACTATAAAGANAAA-A--TA-A-AAA---AATT-A-AA-AANCTAA--T-CAA-ACTNTGGAAAC-GNAGATNTCT-GACNCCANTNGGNAAAATAACTGTCATCAAAACNTTATTATTACCA-A-CNTTAAACCATCTNTTTATTTCACTNCCAAATCCA---AA--NGACA-AT--ATA-ATT--AAA-NANNT-AA--AT---A--TGATTTTNTA--CGANTTTNTAT------GGAA--A-GGNC--CCGCAAAAA---TAAAAA
gi|154652 : ACTATAAAGACAAA-A--TA-ATAAA---AATT-A-AA-AAGCTAA--T-CAA-ACTCTGGCAAT-GCAGATGTAT-GACACCACTGGGTAAAATAACTGTCATCAAATCTTTATTAATACCA-A-TATTAAACCATCTATTTATTTCACTACCTAATCCA---AA--TGATA-AT--ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--TGATTTTTTAT------GGAA--A-GGCC--CCGCAAAAA---TAAAAA
gi|154653 : ACTATAAAGACAAA-A--TA-ATAAA---AATT-A-AA-AAGCTAA--T-AAA-ACGCTGGCAAT-GCAGATGTAT-GACACCACTTGGTAAAATAACTGTCATCAAATTTTTATTACTATCA-A-TGTTAAACCATCTATTCATTTCACTACCTAATCCA---AA--TGATA-AT--ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--TGAATTTCTAT------GGAA--A-GGCC--CTGCAAAAA---TAAAAA
gi|154654 : ACTATAAAGACAAA-A-------------AATT-A-AA-AAGCTAA--T-CAA-ACTCTGGTAAT-GCAGATGTAT-GACACAACTTGGTAAAATAACTGTCATCAAATCTTTACTACTACCA-A-TATTAAACCATCTATTCATTTCACTACCTAATCCA---AA--CGGTA-AT--ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--AGAATTTTTAT------GGAA--A-GGTC--CCGCAAAAAAACCAAAAA
gi|154655 : ATTATAAAAAGAAA-A-----A-AAA---AATT--------TTTTT--T-TAA-ACTCTGGCTAT-GCAGATATAC-GACGCCACTTGGTAAAATAACTGTCATCAGATCTTTATTACTACAA-A-TGTTAAACAATCTATTCAGTTTACTACCTAATCCA---AA--TGATG-AT--ATA-ATT--AAA-TATTT-AA--A---------------TA--CGATTTTCTAA------GGAA--A-GGCA--CTGCAAAAA---TGAAAA
gi|154656 : ACTATAAAGACAAA-A--TATC-AAA---AATT-C-AA-AACCTTA--T-TAA-ACTATGGAAAC-GTAGATTTTT-AACTCCACTAGGTAAAATAACTGTCATCAAAACATTATTGTTACCA-A-CCCTTAACCATTTGTTTATTTCAATTCCAAACCCA---TG--TG--A-GTTAACC-ATT--AAA-AAAAT-TA--ATG--A--T-ATGTTTTA--TGATTTTTTAT------GGGC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154657 : ACTATAAAGACAAA-A--TA-GCAAA---AATT-T-AA-AACCTTA--T-TAG-ACTATTGAAAC-GTAGATTTTT-AACTCCACTAGGTAAAATAACTGTCATCAAAACATTATTGTTACCA-ATCCTTAAA-CATTTGTTTAATTCAATTCTAAACCCATGTAAGTTGACC-AT---TA------AAA-AAATT-AATGAT---A--TG---TTTTA--TGATATTTTAT------GGGC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154658 : ACTACACAGAGAAG-A--TA-A-GGA---AAAT-ACAA-AACTTAA--T-AAC-ACTATGGAAAT-GAAGATATTT-AATACCAGTTGGGAAAAATACAGTTATAAAATTATTGCTTTTACCA-G-TTTTAAATCATCTATTTATCTCATTTCCTAATCCA---AA--AGACG-AA--GTA-ATC--AAA-GATAT-AG--AT---AATCTATTTTATA----ACTTTCTCT------GGAATGATGGCC--CTGCAAAAA---TCAAA
gi|154659 : ATTACAGTGAGAAA-A--TA-ACAAATATAGTT-A-AA----CTGA--T-AAA-ACTTTGGAAGA-GAAGATATCG-GACTCCATAAGGGAAAATCACAGTTATAATATCACTGCTTCTATCA-A-TGTTAAATCATCTCTTTATTTCTCTTCCAAATCCA---AA--TGAAA-CC--ATT-ATT--AAA--AACT-AA--AT---A--GCATATGTTA--TGAGTTTCTTT------GCGA--A-GGTC--CAGCAAAAA---TAAAGA
gi|154660 : ATTATAAAGAAAAA-A--TA-A-ATA-----TT-ATAA-AATCTAAAAT-TAA-AGAATGGTCAA-GAAGATATCT-GACTCCATTAGGAAAAATCACTGTTATAAAAAGTTTGCTATTGCCT-A-TTTTGAATCATATATTTGTAGCATTACCAAATCCT---AA--TGAAA-AT--GTA-ATC--AAA-GAAAT-AA--AT---T--CAATTTTTTA--CGATTTCATAT------GG------GGGCGACAGCCAAAA---TAAAA
gi|154661 : ATTACAAACAAAAG-A--TA-G-AAA---AATT-A-AAGAAATCAA--T-CAG-TCATTGGAAAA-GGCAACATTT-AACTCCACTAGGGAGAATAACTGTAATCAAAACATTGCTAATACCA-G-CTTTTAACCATCT-TTTATATCACTACCAAA-CCA--------GACA-TT--A-A-ATTTGAAA-GATAT-AA--ACAA-A--TAA--CTGTA--TGATTTTTTTT------TGCA--A-GGGC--CAGCAAAAA---TTAAAA
gi|154662 : ATTATAATGAAAAA-A--TAGA-AAA---AATC-A-AA-AACTCAA--T-CGG-ATTTTGGAATG-GAAGATTTTTTAACTCCAACAGGAAAAATAACTGTAATAAAAAGTTTATTAATTCCG-T-CACTTAACCATCTTTTT-TTTCTATTCCAAGTCCA---GA--GGACA-ATT-ATA--TC--AAG-CAAAT-AA--AT---A--ACATTTTATA--CAAATTTCTTT------GGCA--T-GGAC--CTGCAAAAA---TTAAAA
gi|154663 : CTATAAAGACAAA-A--TA-T-CAA---AATTTC-AA-AACCTTA--T-TTA-ACTAGGGAAAC-GTAGATTTTT-AACTCCAATAGGTAAAATAACTGTCATCAAAACACTATTGTTAACA-A-CCCTTAACCATATGTTTATTTCAATTCCAAACCCA---TG--TG--G-GTTAACC-ATT--AAA-AACAT-GA--ATG--A--T-ACGTTTTA--TGA-TTTTTAT------GGAC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154664 : TAAAGACAAATA--TA-A-AAA---CAAT-G-AA-AAGCTTA--T-CAA-ACTCTGGCAGT-GAAGATATTT-GACACCAGTTGTTAAAAAAACTTACAT-A----TTTAGTTTTACC--A-CATTAAACCATCTACTCATTTCACTAGTTAATCC----AA--TGATA-GT--ATA-TTT--AAA-GATTT-AA--GA---A--TAATTATCTATTTTATTTTCTATTCTTAAAGAA--T-GGCC--CCG--AAAA---TGAAA
gi|154665 : TAAGGAAAAA-AC-TG-A-AAA---AATC-A-AA-AAATCAT--TGCAATACT--GGAACA-GAAGGTTTCT-TACACCAATTGGGAAAATCACAGTCATTAAAAGCTTATTATTACCA-T-CCTTAAACCATATTTTTATTTCTCTCCCAAACCCG---CC--AGACACCT--AT--ATT--AAA-CAAAT-TA--ATGACA--TG-TTTTATA--CG--TTCATAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154666 : TAAAAAAAAA-A-----A-AAA---AATA-A-AA-AAAGCAT--TGCAA---TATTGGAACAGTAGGTTTCT-TACACCAATTGG-AAAATCGCAGTCATTAACAGCTTATTATTACCATA-C-TTAAACCA-ATTTTTATTTCTCTCCCAAACCCG---CC--AGACA-CTT-ATA--TT--AAA-CAAATTAATGAT---A--TG-TTTTACA--CG--TTCGTAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154667 : TAAGGAAAAA-AC-TG-A-AAA---AATC-A-AA-AAGTCAT--TGCAA---TATAGGAACAGAAGGTTTCT-TACACCAATTGGGAAAATCACAGTCATTAAAAGCTTATTATTACAA-T-CCTTAAACCATAGTTTTATTTCTCTCCCAAAACCG---CC--AGACACCT--AT--ATT--AAACAAAAT-AATGAC---A--TG-TTTTATA--CG--TTCATAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154668 : TAAGGAAAAA-AACTG-A-AAA---AATC-A-AA-AAATCAT--T-GCA-ATATTGGAATA-GAAGATTTCT-TACAACAATTCGGAAAATCACAGTCAATAAAAGCTTATTATTACCA-T-CCTTAAACCATATTTTTATTTCTCTCCCAAGCCCA---CC--ATACACCT--AT--ATT--AAA-CAAAT-AA--ATGACA--TG-TTTTATA--C--CTTCATAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154669 : A-A--TG-A-AAA---AGTT-A-AA-AACTCAA--T-CGG-CTTTTGGAATA-GAAGATTTTT-AACTCCAATAGGAAAAATAACTGTAATTAAAAAATTATTAATTCCG-T-CACTTAACCATCTTTTTATTTCTATTCCAAGTCCA---GA--GGACA-AT---TATATC--AAG-CAAAT-AA--AT---G--ACATTTTTAA--CAAATTTCTTT------GGCA--T-GGAC--CTGCAAAAA---TTAAAA
Alignments
lowQualScore : 1111111 11111111 111111111 222222222
lowQualScore : 1 2 5555555 333 555 2 1 33 55 2 3 2 22 1 1 2 44 1 1 1 3 0 2 444 0 444 3 0 3 1 1 0 11111111 777777777 33 55 11 2 66 444444444 1 555555 6 666666 0 33 2 1 33 2 333
lowQualScore : . . ....... ... ... . . .. .. . . . .. . . . .. . . . . . . ... . ... . . . . . . ........ ......... .. .. .. . .. ......... . ...... . ...... . .. . . .. . ...
lowQualScore : 0 2 1111111 999 333 2 8 11 88 2 2 2 00 0 0 7 00 0 0 0 2 4 8 999 1 333 2 1 2 1 0 2 77777777 888888888 11 00 99 2 11 666666666 8 555555 7 444444 2 11 2 0 11 8 999
consensus : ACTATAAAGANAAA-A--TA-A-AAA---AATT-A-AA-AANCTAA--T-CAA-ACTNT-GGAAANGNAGATNTCT-GACNCCANTNGGNAAAATAACTGTCATCAAAACNTTATTATTACCA-A-CNTTAAACCATCTNTTTATTTCACTNCCAAATCCA---AA--NGACA-NT--ATA-ATT--AAA-GANAT-AA--AT---A--TGATTTTNTA--CGATTTTC-TAT------GGAA--A-GGNC--CCGCAAAAA---TAAAAA
Reference ( family-841 ) : ACTATAAAGANAAA-A--TA-A-AAA---AATT-A-AA-AANCTAA--T-CAA-ACTNT-GGAAANGNAGATNTCT-GACNCCANTNGGNAAAATAACTGTCATCAAAACNTTATTATTACCA-A-CNTTAAACCATCTNTTTATTTCACTNCCAAATCCA---AA--NGACA-AT--ATA-ATT--AAA-GANAT-AA--AT---A--TGATTTTNTA--CGANTTTC-TAT------GGAA--A-GGNC--CCGCAAAAA---TAAAAA
gi|154652 : ACTATAAAGACAAA-A--TA-ATAAA---AATT-A-AA-AAGCTAA--T-CAA-ACTCT-GGCAATGCAGATGTAT-GACACCACTGGGTAAAATAACTGTCATCAAATCTTTATTAATACCA-A-TATTAAACCATCTATTTATTTCACTACCTAATCCA---AA--TGATA-AT--ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--TGATTTTT-TAT------GGAA--A-GGCC--CCGCAAAAA---TAAAAA
gi|154653 : ACTATAAAGACAAA-A--TA-ATAAA---AATT-A-AA-AAGCTAA--T-AAA-ACGCT-GGCAATGCAGATGTAT-GACACCACTTGGTAAAATAACTGTCATCAAATTTTTATTACTATCA-A-TGTTAAACCATCTATTCATTTCACTACCTAATCCA---AA--TGATA-AT--ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--TGAATTTC-TAT------GGAA--A-GGCC--CTGCAAAAA---TAAAAA
gi|154654 : ACTATAAAGACAAA-A-------------AATT-A-AA-AAGCTAA--T-CAA-ACTCT-GGTAATGCAGATGTAT-GACACAACTTGGTAAAATAACTGTCATCAAATCTTTACTACTACCA-A-TATTAAACCATCTATTCATTTCACTACCTAATCCA---AA--CGGTA-AT--ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--AGAATTTT-TAT------GGAA--A-GGTC--CCGCAAAAAAACCAAAAA
gi|154655 : ATTATAAAAAGAAA-A-----A-AAA---AATT--------TTTTT--T-TAA-ACTCT-GGCTATGCAGATATAC-GACGCCACTTGGTAAAATAACTGTCATCAGATCTTTATTACTACAA-A-TGTTAAACAATCTATTCAGTTTACTACCTAATCCA---AA--TGATG-AT--ATA-ATT--AAA-TATTT-AA--A---------------TA--CGATTTTC-TAA------GGAA--A-GGCA--CTGCAAAAA---TGAAAA
gi|154656 : ACTATAAAGACAAA-A--TATC-AAA---AATT-C-AA-AACCTTA--T-TAA-ACTAT-GGAAACGTAGATTTTT-AACTCCACTAGGTAAAATAACTGTCATCAAAACATTATTGTTACCA-A-CCCTTAACCATTTGTTTATTTCAATTCCAAACCCA---TG--TG--A-GTTAACC-ATT--AAA-AAAAT-TA--ATG--A--T-ATGTTTTA--TGATTTTT-TAT------GGGC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154657 : ACTATAAAGACAAA-A--TA-GCAAA---AATT-T-AA-AACCTTA--T-TAG-ACTAT-TGAAACGTAGATTTTT-AACTCCACTAGGTAAAATAACTGTCATCAAAACATTATTGTTACCA-ATCCTTAAA-CATTTGTTTAATTCAATTCTAAACCCATGTAAGTTGAC--------C-ATT--AAA-AAAAT-TA--ATG--A--T-ATGTTTTA--TGATATTT-TAT------GGGC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154658 : ACTACACAGAGAAG-A--TA-A-GGA---AAAT-ACAA-AACTTAA--T-AAC-ACTAT-GGAAATGAAGATATTT-AATACCAGTTGGGAAAAATACAGTTATAAAATTATTGCTTTTACCA-G-TTTTAAATCATCTATTTATCTCATTTCCTAATCCA---AA--AGACG-AA--GTA-ATC--AAA-GATAT-AG--AT---AATCTATTTTATA----ACTTTC-TCT------GGAATGATGGCC--CTGCAAAAA---TCAAA
gi|154659 : ATTACAGTGAGAAA-A--TA-ACAAATATAGTT-A-AA----CTGA--T-AAA-ACTTT-GGAAGAGAAGATATCG-GACTCCATAAGGGAAAATCACAGTTATAATATCACTGCTTCTATCA-A-TGTTAAATCATCTCTTTATTTCTCTTCCAAATCCA---AA--TGAAA-CC--ATT-ATT--AAA-AAC-T-AA--AT---A--GCATATGTTA--TGAGTTTC-TTT------GCGA--A-GGTC--CAGCAAAAA---TAAAGA
gi|154660 : ATTATAAAGAAAAA-A--TA-A-ATA-----TT-ATAA-AATCTAAAAT-TAA-AGAAT-GGTCAAGAAGATATCT-GACTCCATTAGGAAAAATCACTGTTATAAAAAGTTTGCTATTGCCT-A-TTTTGAATCATATATTTGTAGCATTACCAAATCCT---AA--TGAAA-AT--GTA-ATC--AAA-GAAAT-AA--AT---T--CAATTTTTTA--CGATTTCA-TAT------GG------GGGCGACAGCCAAAA---TAAAA
gi|154661 : ATTACAAACAAAAG-A--TA-G-AAA---AATT-A-AAGAAATCAA--T-CAG-TCATT-GGAAAAGGCAACATTT-AACTCCACTAGGGAGAATAACTGTAATCAAAACATTGCTAATACCA-G-CTTTTAACCATCT-TTTATATCACTACCAAA-CCA--------GACA-TT--A-A-ATTTGAAA-GATAT-AA--ACAA-A--TAA--CTGTA--TGATTTTT-TTT------TGCA--A-GGGC--CAGCAAAAA---TTAAAA
gi|154662 : ATTATAATGAAAAA-A--TAGA-AAA---AATC-A-AA-AACTCAA--T-CGG-ATTTT-GGAATGGAAGATTTTTTAACTCCAACAGGAAAAATAACTGTAATAAAAAGTTTATTAATTCCG-T-CACTTAACCATCTTTTT-TTTCTATTCCAAGTCCA---GA--GGACA-AT---TATATC--AAG-CAAAT-AA--AT---A--ACATTTTATA--CAAATTTC-TTT------GGCA--T-GGAC--CTGCAAAAA---TTAAAA
gi|154663 : CTATAAAGACAAA-A--TA-T-CAA---AATTTC-AA-AACCTTA--T-TTA-ACTAG-GGAAACGTAGATTTTT-AACTCCAATAGGTAAAATAACTGTCATCAAAACACTATTGTTAACA-A-CCCTTAACCATATGTTTATTTCAATTCCAAACCCA---TG--TG--G-GTTAACC-ATT--AAA-AACAT-GA--ATG--A--T-ACGTTTTA--TGATTTT--TAT------GGAC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154664 : TAAAGACAAATA--TA-A-AAA---CAAT-G-AA-AAGCTTA--T-CAA-ACTCT-GGCAGTGAAGATATTT-GACACCAGTTGTTAAAAAAACTTACAT-A----TTTAGTTTTACC--A-CATTAAACCATCTACTCATTTCACTAGTTAATCC----AA--TGATA-GT--ATA-TTT--AAA-GATTT-AA--GA---A--TAATTATCTATTTTATTTTC-TATTCTTAAAGAA--T-GGCC--CCG--AAAA---TGAAA
gi|154665 : TAAGGAAAAA-AC-TG-A-AAA---AATC-A-AA-AAATCAT--TGCAATACT---GGAACAGAAGGTTTCT-TACACCAATTGGGAAAATCACAGTCATTAAAAGCTTATTATTACCA-T-CCTTAAACCATATTTTTATTTCTCTCCCAAACCCG---CC--AGACACCT--AT--ATT--AAA-CAAAT-TA--ATGACA--TG-TTTTATA--CG---TTCATAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154666 : TAAAAAAAAA-A-----A-AAA---AATA-A-AA-AAAGCAT--T-GCA-ATATT-GGAACAGTAGGTTTCT-TACACCAATTGG-AAAATCGCAGTCATTAACAGCTTATTATTACCATA-C-TTAAACCA-ATTTTTATTTCTCTCCCAAACCCG---CC--AGACA-CTT-ATA--TT--AAA-CAAATTAATGAT---A--TG-TTTTACA--CG---TTCGTAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154667 : TAAGGAAAAA-AC-TG-A-AAA---AATC-A-AA-AAGTCAT--TGCAA---TATAGGAACAGAAGGTTTCT-TACACCAATTGGGAAAATCACAGTCATTAAAAGCTTATTATTACAA-T-CCTTAAACCATAGTTTTATTTCTCTCCCAAAACCG---CC--AGACACCT--AT--ATT--AAACAAAAT-AATGAC---A--TG-TTTTATA--CG---TTCATAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154668 : TAAGGAAAAA-AACTG-A-AAA---AATC-A-AA-AAATCAT--T-GCA-ATATT-GGAATAGAAGATTTCT-TACAACAATTCGGAAAATCACAGTCAATAAAAGCTTATTATTACCA-T-CCTTAAACCATATTTTTATTTCTCTCCCAAGCCCA---CC--ATACACCT--AT--ATT--AAA-CAAAT-AA--ATGACA--TG-TTTTATA--C--CTTCA-TAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154669 : A-A--TG-A-AAA---AGTT-A-AA-AACTCAA--T-CGG-CTTTT-GGAATAGAAGATTTTT-AACTCCAATAGGAAAAATAACTGTAATTAAAAAATTATTAATTCCG-T-CACTTAACCATCTTTTTATTTCTATTCCAAGTCCA---GA--GGACA-AT---TATATC--AAG-CAAAT-AA--AT---G--ACATTTTTAA--CAAATTTC-TTT------GGCA--T-GGAC--CTGCAAAAA---TTAAAA
Alignments
lowQualScore : 1111111 111111111 222222222
lowQualScore : 1 2 5555555 333 555 2 1 33 55 2 3 2 22 1 1 2 44 1 1 1 3 0 2 444 0 444 3 0 3 1 1 0 6666 4 444444444 33 55 11 2 66 444444444 1 666666 8 666666 0 33 2 1 33 2 333
lowQualScore : . . ....... ... ... . . .. .. . . . .. . . . .. . . . . . . ... . ... . . . . . . .... . ......... .. .. .. . .. ......... . ...... . ...... . .. . . .. . ...
lowQualScore : 0 2 1111111 999 333 2 8 11 88 2 2 2 00 0 0 7 00 0 0 0 2 4 8 999 1 333 2 1 2 1 0 2 4444 2 111111111 11 00 99 2 11 666666666 8 444444 9 444444 2 11 2 0 11 8 999
consensus : ACTATAAAGANAAA-A--TA-A-AAA---AATT-A-AA-AANCTAA--T-CAA-ACTNT-GGAAANGNAGATNTCT-GACNCCANTNGGNAAAATAACTGTCATCAAAACNTTATTATTACCA-A-CNTTAAACCATCTNTTTATTTCACTNCCAAATCCANANGACA-NT--ATA-ATT--AAA-GANAT-AA--AT---A--TGATTTTNTA--CGATTTTC-TAT------GGAA--A-GGNC--CCGCAAAAA---TAAAAA
Reference ( family-841 ) : ACTATAAAGANAAA-A--TA-A-AAA---AATT-A-AA-AANCTAA--T-CAA-ACTNT-GGAAANGNAGATNTCT-GACNCCANTNGGNAAAATAACTGTCATCAAAACNTTATTATTACCA-A-CNTTAAACCATCTNTTTATTTCACTNCCAAATCCAAANGACA-NT--ATA-ATT--AAA-GANAT-AA--AT---A--TGATTTTNTA--CGATTTTC-TAT------GGAA--A-GGNC--CCGCAAAAA---TAAAAA
gi|154652 : ACTATAAAGACAAA-A--TA-ATAAA---AATT-A-AA-AAGCTAA--T-CAA-ACTCT-GGCAATGCAGATGTAT-GACACCACTGGGTAAAATAACTGTCATCAAATCTTTATTAATACCA-A-TATTAAACCATCTATTTATTTCACTACCTAATCCAAATGATA-AT--ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--TGATTTTT-TAT------GGAA--A-GGCC--CCGCAAAAA---TAAAAA
gi|154653 : ACTATAAAGACAAA-A--TA-ATAAA---AATT-A-AA-AAGCTAA--T-AAA-ACGCT-GGCAATGCAGATGTAT-GACACCACTTGGTAAAATAACTGTCATCAAATTTTTATTACTATCA-A-TGTTAAACCATCTATTCATTTCACTACCTAATCCAAATGATA-AT--ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--TGAATTTC-TAT------GGAA--A-GGCC--CTGCAAAAA---TAAAAA
gi|154654 : ACTATAAAGACAAA-A-------------AATT-A-AA-AAGCTAA--T-CAA-ACTCT-GGTAATGCAGATGTAT-GACACAACTTGGTAAAATAACTGTCATCAAATCTTTACTACTACCA-A-TATTAAACCATCTATTCATTTCACTACCTAATCCAAACGGTA-AT--ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--AGAATTTT-TAT------GGAA--A-GGTC--CCGCAAAAAAACCAAAAA
gi|154655 : ATTATAAAAAGAAA-A-----A-AAA---AATT--------TTTTT--T-TAA-ACTCT-GGCTATGCAGATATAC-GACGCCACTTGGTAAAATAACTGTCATCAGATCTTTATTACTACAA-A-TGTTAAACAATCTATTCAGTTTACTACCTAATCCAAATGATG-AT--ATA-ATT--AAA-TATTT-AA--A---------------TA--CGATTTTC-TAA------GGAA--A-GGCA--CTGCAAAAA---TGAAAA
gi|154656 : ACTATAAAGACAAA-A--TATC-AAA---AATT-C-AA-AACCTTA--T-TAA-ACTAT-GGAAACGTAGATTTTT-AACTCCACTAGGTAAAATAACTGTCATCAAAACATTATTGTTACCA-A-CCCTTAACCATTTGTTTATTTCAATTCCAAACCCATGTGA-G-TTA-ACC-ATT--AAA-AAAAT-TA--ATG--A--T-ATGTTTTA--TGATTTTT-TAT------GGGC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154657 : ACTATAAAGACAAA-A--TA-GCAAA---AATT-T-AA-AACCTTA--T-TAG-ACTAT-TGAAACGTAGATTTTT-AACTCCACTAGGTAAAATAACTGTCATCAAAACATTATTGTTACCA-ATCCTTAAA-CATTTGTTTAATTCAATTCTAAACCC--ATGTAA-GTTGACC-ATT--AAA-AAAAT-TA--ATG--A--T-ATGTTTTA--TGATATTT-TAT------GGGC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154658 : ACTACACAGAGAAG-A--TA-A-GGA---AAAT-ACAA-AACTTAA--T-AAC-ACTAT-GGAAATGAAGATATTT-AATACCAGTTGGGAAAAATACAGTTATAAAATTATTGCTTTTACCA-G-TTTTAAATCATCTATTTATCTCATTTCCTAATCCAAAAGACG-AA--GTA-ATC--AAA-GATAT-AG--AT---AATCTATTTTATA----ACTTTC-TCT------GGAATGATGGCC--CTGCAAAAA---TCAAA
gi|154659 : ATTACAGTGAGAAA-A--TA-ACAAATATAGTT-A-AA----CTGA--T-AAA-ACTTT-GGAAGAGAAGATATCG-GACTCCATAAGGGAAAATCACAGTTATAATATCACTGCTTCTATCA-A-TGTTAAATCATCTCTTTATTTCTCTTCCAAATCCAAATGAAA-CC--ATT-ATT--AAA-AAC-T-AA--AT---A--GCATATGTTA--TGAGTTTC-TTT------GCGA--A-GGTC--CAGCAAAAA---TAAAGA
gi|154660 : ATTATAAAGAAAAA-A--TA-A-ATA-----TT-ATAA-AATCTAAAAT-TAA-AGAAT-GGTCAAGAAGATATCT-GACTCCATTAGGAAAAATCACTGTTATAAAAAGTTTGCTATTGCCT-A-TTTTGAATCATATATTTGTAGCATTACCAAATCCTAATGAAA-AT--GTA-ATC--AAA-GAAAT-AA--AT---T--CAATTTTTTA--CGATTTCA-TAT------GG------GGGCGACAGCCAAAA---TAAAA
gi|154661 : ATTACAAACAAAAG-A--TA-G-AAA---AATT-A-AAGAAATCAA--T-CAG-TCATT-GGAAAAGGCAACATTT-AACTCCACTAGGGAGAATAACTGTAATCAAAACATTGCTAATACCA-G-CTTTTAACCATCT-TTTATATCACTACCAAA-CCA---GACA-TT--A-A-ATTTGAAA-GATAT-AA--ACAA-A--TAA--CTGTA--TGATTTTT-TTT------TGCA--A-GGGC--CAGCAAAAA---TTAAAA
gi|154662 : ATTATAATGAAAAA-A--TAGA-AAA---AATC-A-AA-AACTCAA--T-CGG-ATTTT-GGAATGGAAGATTTTTTAACTCCAACAGGAAAAATAACTGTAATAAAAAGTTTATTAATTCCG-T-CACTTAACCATCTTTTT-TTTCTATTCCAAGTCCAGAGGACA-AT---TATATC--AAG-CAAAT-AA--AT---A--ACATTTTATA--CAAATTTC-TTT------GGCA--T-GGAC--CTGCAAAAA---TTAAAA
gi|154663 : CTATAAAGACAAA-A--TA-T-CAA---AATTTC-AA-AACCTTA--T-TTA-ACTAG-GGAAACGTAGATTTTT-AACTCCAATAGGTAAAATAACTGTCATCAAAACACTATTGTTAACA-A-CCCTTAACCATATGTTTATTTCAATTCCAAACCCATGTGG-G-TTA-ACC-ATT--AAA-AACAT-GA--ATG--A--T-ACGTTTTA--TGATTTT--TAT------GGAC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154664 : TAAAGACAAATA--TA-A-AAA---CAAT-G-AA-AAGCTTA--T-CAA-ACTCT-GGCAGTGAAGATATTT-GACACCAGTTGTTAAAAAAACTTACAT-A----TTTAGTTTTACC--A-CATTAAACCATCTACTCATTTCACTAGTTAATCC-AATGATA-GT--ATA-TTT--AAA-GATTT-AA--GA---A--TAATTATCTATTTTATTTTC-TATTCTTAAAGAA--T-GGCC--CCG--AAAA---TGAAA
gi|154665 : TAAGGAAAAA-AC-TG-A-AAA---AATC-A-AA-AAATCAT--TGCAATACT---GGAACAGAAGGTTTCT-TACACCAATTGGGAAAATCACAGTCATTAAAAGCTTATTATTACCA-T-CCTTAAACCATATTTTTATTTCTCTCCCAAACCCGCCAGACACCT--AT--ATT--AAA-CAAAT-TA--ATGACA--TG-TTTTATA--CG---TTCATAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154666 : TAAAAAAAAA-A-----A-AAA---AATA-A-AA-AAAGCAT--T-GCA-ATATT-GGAACAGTAGGTTTCT-TACACCAATTGG-AAAATCGCAGTCATTAACAGCTTATTATTACCATA-C-TTAAACCA-ATTTTTATTTCTCTCCCAAACCCGCCAGACA-CTT-ATA--TT--AAA-CAAATTAATGAT---A--TG-TTTTACA--CG---TTCGTAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154667 : TAAGGAAAAA-AC-TG-A-AAA---AATC-A-AA-AAGTCAT--TGCAA---TATAGGAACAGAAGGTTTCT-TACACCAATTGGGAAAATCACAGTCATTAAAAGCTTATTATTACAA-T-CCTTAAACCATAGTTTTATTTCTCTCCCAAAACCGCCAGACACCT--AT--ATT--AAACAAAAT-AATGAC---A--TG-TTTTATA--CG---TTCATAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154668 : TAAGGAAAAA-AACTG-A-AAA---AATC-A-AA-AAATCAT--T-GCA-ATATT-GGAATAGAAGATTTCT-TACAACAATTCGGAAAATCACAGTCAATAAAAGCTTATTATTACCA-T-CCTTAAACCATATTTTTATTTCTCTCCCAAGCCCACCATACACCT--AT--ATT--AAA-CAAAT-AA--ATGACA--TG-TTTTATA--C---CTTCATAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154669 : A-A--TG-A-AAA---AGTT-A-AA-AACTCAA--T-CGG-CTTTT-GGAATAGAAGATTTTT-AACTCCAATAGGAAAAATAACTGTAATTAAAAAATTATTAATTCCG-T-CACTTAACCATCTTTTTATTTCTATTCCAAGTCCAGAGGACA-AT---TATATC--AAG-CAAAT-AA--AT---G--ACATTTTTAA--CAAATTTC-TTT------GGCA--T-GGAC--CTGCAAAAA---TTAAAA
Alignments
lowQualScore : 1111111 11111111 222222222
lowQualScore : 1 2 5555555 333 555 2 1 33 55 2 3 2 22 1 1 2 44 1 1 1 3 0 2 444 0 444 3 0 3 1 1 0 777 4 22222222 33 55 11 2 66 444444444 1 666666 8 666666 0 33 2 1 33 2 333
lowQualScore : . . ....... ... ... . . .. .. . . . .. . . . .. . . . . . . ... . ... . . . . . . ... . ........ .. .. .. . .. ......... . ...... . ...... . .. . . .. . ...
lowQualScore : 0 2 1111111 999 333 2 8 11 88 2 2 2 00 0 0 7 00 0 0 0 2 4 8 999 1 333 2 1 2 1 0 2 333 2 33333333 11 00 99 2 11 666666666 8 444444 9 444444 2 11 2 0 11 8 999
consensus : ACTATAAAGANAAA-A--TA-A-AAA---AATT-A-AA-AANCTAA--T-CAA-ACTNT-GGAAANGNAGATNTCT-GACNCCANTNGGNAAAATAACTGTCATCAAAACNTTATTATTACCA-A-CNTTAAACCATCTNTTTATTTCACTNCCAAATCCANANGACA-NT-ATA-ATT--AAA-GANAT-AA--AT---A--TGATTTTNTA--CGATTTTC-TAT------GGAA--A-GGNC--CCGCAAAAA---TAAAAA
Reference ( family-841 ) : ACTATAAAGANAAA-A--TA-A-AAA---AATT-A-AA-AANCTAA--T-CAA-ACTNT-GGAAANGNAGATNTCT-GACNCCANTNGGNAAAATAACTGTCATCAAAACNTTATTATTACCA-A-CNTTAAACCATCTNTTTATTTCACTNCCAAATCCANANGACA-NT-ATA-ATT--AAA-GANAT-AA--AT---A--TGATTTTNTA--CGATTTTC-TAT------GGAA--A-GGNC--CCGCAAAAA---TAAAAA
gi|154652 : ACTATAAAGACAAA-A--TA-ATAAA---AATT-A-AA-AAGCTAA--T-CAA-ACTCT-GGCAATGCAGATGTAT-GACACCACTGGGTAAAATAACTGTCATCAAATCTTTATTAATACCA-A-TATTAAACCATCTATTTATTTCACTACCTAATCCAAATGATA-AT-ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--TGATTTTT-TAT------GGAA--A-GGCC--CCGCAAAAA---TAAAAA
gi|154653 : ACTATAAAGACAAA-A--TA-ATAAA---AATT-A-AA-AAGCTAA--T-AAA-ACGCT-GGCAATGCAGATGTAT-GACACCACTTGGTAAAATAACTGTCATCAAATTTTTATTACTATCA-A-TGTTAAACCATCTATTCATTTCACTACCTAATCCAAATGATA-AT-ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--TGAATTTC-TAT------GGAA--A-GGCC--CTGCAAAAA---TAAAAA
gi|154654 : ACTATAAAGACAAA-A-------------AATT-A-AA-AAGCTAA--T-CAA-ACTCT-GGTAATGCAGATGTAT-GACACAACTTGGTAAAATAACTGTCATCAAATCTTTACTACTACCA-A-TATTAAACCATCTATTCATTTCACTACCTAATCCAAACGGTA-AT-ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--AGAATTTT-TAT------GGAA--A-GGTC--CCGCAAAAAAACCAAAAA
gi|154655 : ATTATAAAAAGAAA-A-----A-AAA---AATT--------TTTTT--T-TAA-ACTCT-GGCTATGCAGATATAC-GACGCCACTTGGTAAAATAACTGTCATCAGATCTTTATTACTACAA-A-TGTTAAACAATCTATTCAGTTTACTACCTAATCCAAATGATG-AT-ATA-ATT--AAA-TATTT-AA--A---------------TA--CGATTTTC-TAA------GGAA--A-GGCA--CTGCAAAAA---TGAAAA
gi|154656 : ACTATAAAGACAAA-A--TATC-AAA---AATT-C-AA-AACCTTA--T-TAA-ACTAT-GGAAACGTAGATTTTT-AACTCCACTAGGTAAAATAACTGTCATCAAAACATTATTGTTACCA-A-CCCTTAACCATTTGTTTATTTCAATTCCAAACCCATGTGA-G-TTAACC-ATT--AAA-AAAAT-TA--ATG--A--T-ATGTTTTA--TGATTTTT-TAT------GGGC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154657 : ACTATAAAGACAAA-A--TA-GCAAA---AATT-T-AA-AACCTTA--T-TAG-ACTAT-TGAAACGTAGATTTTT-AACTCCACTAGGTAAAATAACTGTCATCAAAACATTATTGTTACCA-ATCCTTAAA-CATTTGTTTAATTCAATTCTAAACCCATGTAAGT-TG-ACC-ATT--AAA-AAAAT-TA--ATG--A--T-ATGTTTTA--TGATATTT-TAT------GGGC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154658 : ACTACACAGAGAAG-A--TA-A-GGA---AAAT-ACAA-AACTTAA--T-AAC-ACTAT-GGAAATGAAGATATTT-AATACCAGTTGGGAAAAATACAGTTATAAAATTATTGCTTTTACCA-G-TTTTAAATCATCTATTTATCTCATTTCCTAATCCAAAAGACG-AA-GTA-ATC--AAA-GATAT-AG--AT---AATCTATTTTATA----ACTTTC-TCT------GGAATGATGGCC--CTGCAAAAA---TCAAA
gi|154659 : ATTACAGTGAGAAA-A--TA-ACAAATATAGTT-A-AA----CTGA--T-AAA-ACTTT-GGAAGAGAAGATATCG-GACTCCATAAGGGAAAATCACAGTTATAATATCACTGCTTCTATCA-A-TGTTAAATCATCTCTTTATTTCTCTTCCAAATCCAAATGAAA-CC-ATT-ATT--AAA-AAC-T-AA--AT---A--GCATATGTTA--TGAGTTTC-TTT------GCGA--A-GGTC--CAGCAAAAA---TAAAGA
gi|154660 : ATTATAAAGAAAAA-A--TA-A-ATA-----TT-ATAA-AATCTAAAAT-TAA-AGAAT-GGTCAAGAAGATATCT-GACTCCATTAGGAAAAATCACTGTTATAAAAAGTTTGCTATTGCCT-A-TTTTGAATCATATATTTGTAGCATTACCAAATCCTAATGAAA-AT-GTA-ATC--AAA-GAAAT-AA--AT---T--CAATTTTTTA--CGATTTCA-TAT------GG------GGGCGACAGCCAAAA---TAAAA
gi|154661 : ATTACAAACAAAAG-A--TA-G-AAA---AATT-A-AAGAAATCAA--T-CAG-TCATT-GGAAAAGGCAACATTT-AACTCCACTAGGGAGAATAACTGTAATCAAAACATTGCTAATACCA-G-CTTTTAACCATCT-TTTATATCACTACCAAA-CCA---GACA-TT-A-A-ATTTGAAA-GATAT-AA--ACAA-A--TAA--CTGTA--TGATTTTT-TTT------TGCA--A-GGGC--CAGCAAAAA---TTAAAA
gi|154662 : ATTATAATGAAAAA-A--TAGA-AAA---AATC-A-AA-AACTCAA--T-CGG-ATTTT-GGAATGGAAGATTTTTTAACTCCAACAGGAAAAATAACTGTAATAAAAAGTTTATTAATTCCG-T-CACTTAACCATCTTTTT-TTTCTATTCCAAGTCCAGAGGACA-AT--TATATC--AAG-CAAAT-AA--AT---A--ACATTTTATA--CAAATTTC-TTT------GGCA--T-GGAC--CTGCAAAAA---TTAAAA
gi|154663 : CTATAAAGACAAA-A--TA-T-CAA---AATTTC-AA-AACCTTA--T-TTA-ACTAG-GGAAACGTAGATTTTT-AACTCCAATAGGTAAAATAACTGTCATCAAAACACTATTGTTAACA-A-CCCTTAACCATATGTTTATTTCAATTCCAAACCCATGTGG-G-TTAACC-ATT--AAA-AACAT-GA--ATG--A--T-ACGTTTTA--TGATTTT--TAT------GGAC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154664 : TAAAGACAAATA--TA-A-AAA---CAAT-G-AA-AAGCTTA--T-CAA-ACTCT-GGCAGTGAAGATATTT-GACACCAGTTGTTAAAAAAACTTACAT-A----TTTAGTTTTACC--A-CATTAAACCATCTACTCATTTCACTAGTTAATCCA-ATGATA-GT-ATA-TTT--AAA-GATTT-AA--GA---A--TAATTATCTATTTTATTTTC-TATTCTTAAAGAA--T-GGCC--CCG--AAAA---TGAAA
gi|154665 : TAAGGAAAAA-AC-TG-A-AAA---AATC-A-AA-AAATCAT--TGCAATACT---GGAACAGAAGGTTTCT-TACACCAATTGGGAAAATCACAGTCATTAAAAGCTTATTATTACCA-T-CCTTAAACCATATTTTTATTTCTCTCCCAAACCCGCCAGACACCT-AT--ATT--AAA-CAAAT-TA--ATGACA--TG-TTTTATA--CG---TTCATAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154666 : TAAAAAAAAA-A-----A-AAA---AATA-A-AA-AAAGCAT--T-GCA-ATATT-GGAACAGTAGGTTTCT-TACACCAATTGG-AAAATCGCAGTCATTAACAGCTTATTATTACCATA-C-TTAAACCA-ATTTTTATTTCTCTCCCAAACCCGCCAGACA-CTTATA--TT--AAA-CAAATTAATGAT---A--TG-TTTTACA--CG---TTCGTAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154667 : TAAGGAAAAA-AC-TG-A-AAA---AATC-A-AA-AAGTCAT--TGCAA---TATAGGAACAGAAGGTTTCT-TACACCAATTGGGAAAATCACAGTCATTAAAAGCTTATTATTACAA-T-CCTTAAACCATAGTTTTATTTCTCTCCCAAAACCGCCAGACACCT-AT--ATT--AAACAAAAT-AATGAC---A--TG-TTTTATA--CG---TTCATAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154668 : TAAGGAAAAA-AACTG-A-AAA---AATC-A-AA-AAATCAT--T-GCA-ATATT-GGAATAGAAGATTTCT-TACAACAATTCGGAAAATCACAGTCAATAAAAGCTTATTATTACCA-T-CCTTAAACCATATTTTTATTTCTCTCCCAAGCCCACCATACACCT-AT--ATT--AAA-CAAAT-AA--ATGACA--TG-TTTTATA--C---CTTCATAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154669 : A-A--TG-A-AAA---AGTT-A-AA-AACTCAA--T-CGG-CTTTT-GGAATAGAAGATTTTT-AACTCCAATAGGAAAAATAACTGTAATTAAAAAATTATTAATTCCG-T-CACTTAACCATCTTTTTATTTCTATTCCAAGTCCAGAGGACA-AT--TATATC--AAG-CAAAT-AA--AT---G--ACATTTTTAA--CAAATTTC-TTT------GGCA--T-GGAC--CTGCAAAAA---TTAAAA
Alignments
lowQualScore : 1111111 11111111 222222222
lowQualScore : 1 2 5555555 333 555 2 1 33 55 2 3 2 22 1 1 2 44 1 1 1 3 0 2 444 0 444 3 0 3 1 1 0 777 4 22222222 33 55 11 2 66 444444444 1 666666 8 666666 0 33 2 1 33 2 333
lowQualScore : . . ....... ... ... . . .. .. . . . .. . . . .. . . . . . . ... . ... . . . . . . ... . ........ .. .. .. . .. ......... . ...... . ...... . .. . . .. . ...
lowQualScore : 0 2 1111111 999 333 2 8 11 88 2 2 2 00 0 0 7 00 0 0 0 2 4 8 999 1 333 2 1 2 1 0 2 333 2 33333333 11 00 99 2 11 666666666 8 444444 9 444444 2 11 2 0 11 8 999
consensus : ACTATAAAGANAAA-A--TA-A-AAA---AATT-A-AA-AANCTAA--T-CAA-ACTNT-GGAAANGNAGATNTCT-GACNCCANTNGGNAAAATAACTGTCATCAAAACNTTATTATTACCA-A-CNTTAAACCATCTNTTTATTTCACTNCCAAATCCANANGACA-NT-ATA-ATT--AAA-GANAT-AA--AT---A--TGATTTTNTA--CGATTTTC-TAT------GGAA--A-GGNC--CCGCAAAAA---TAAAAA
Reference ( family-841 ) : ACTATAAAGANAAA-A--TA-A-AAA---AATT-A-AA-AANCTAA--T-CAA-ACTNT-GGAAANGNAGATNTCT-GACNCCANTNGGNAAAATAACTGTCATCAAAACNTTATTATTACCA-A-CNTTAAACCATCTNTTTATTTCACTNCCAAATCCANANGACA-NT-ATA-ATT--AAA-GANAT-AA--AT---A--TGATTTTNTA--CGATTTTC-TAT------GGAA--A-GGNC--CCGCAAAAA---TAAAAA
gi|154652 : ACTATAAAGACAAA-A--TA-ATAAA---AATT-A-AA-AAGCTAA--T-CAA-ACTCT-GGCAATGCAGATGTAT-GACACCACTGGGTAAAATAACTGTCATCAAATCTTTATTAATACCA-A-TATTAAACCATCTATTTATTTCACTACCTAATCCAAATGATA-AT-ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--TGATTTTT-TAT------GGAA--A-GGCC--CCGCAAAAA---TAAAAA
gi|154653 : ACTATAAAGACAAA-A--TA-ATAAA---AATT-A-AA-AAGCTAA--T-AAA-ACGCT-GGCAATGCAGATGTAT-GACACCACTTGGTAAAATAACTGTCATCAAATTTTTATTACTATCA-A-TGTTAAACCATCTATTCATTTCACTACCTAATCCAAATGATA-AT-ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--TGAATTTC-TAT------GGAA--A-GGCC--CTGCAAAAA---TAAAAA
gi|154654 : ACTATAAAGACAAA-A-------------AATT-A-AA-AAGCTAA--T-CAA-ACTCT-GGTAATGCAGATGTAT-GACACAACTTGGTAAAATAACTGTCATCAAATCTTTACTACTACCA-A-TATTAAACCATCTATTCATTTCACTACCTAATCCAAACGGTA-AT-ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--AGAATTTT-TAT------GGAA--A-GGTC--CCGCAAAAAAACCAAAAA
gi|154655 : ATTATAAAAAGAAA-A-----A-AAA---AATT--------TTTTT--T-TAA-ACTCT-GGCTATGCAGATATAC-GACGCCACTTGGTAAAATAACTGTCATCAGATCTTTATTACTACAA-A-TGTTAAACAATCTATTCAGTTTACTACCTAATCCAAATGATG-AT-ATA-ATT--AAA-TATTT-AA--A---------------TA--CGATTTTC-TAA------GGAA--A-GGCA--CTGCAAAAA---TGAAAA
gi|154656 : ACTATAAAGACAAA-A--TATC-AAA---AATT-C-AA-AACCTTA--T-TAA-ACTAT-GGAAACGTAGATTTTT-AACTCCACTAGGTAAAATAACTGTCATCAAAACATTATTGTTACCA-A-CCCTTAACCATTTGTTTATTTCAATTCCAAACCCATGTGA-G-TTAACC-ATT--AAA-AAAAT-TA--ATG--A--T-ATGTTTTA--TGATTTTT-TAT------GGGC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154657 : ACTATAAAGACAAA-A--TA-GCAAA---AATT-T-AA-AACCTTA--T-TAG-ACTAT-TGAAACGTAGATTTTT-AACTCCACTAGGTAAAATAACTGTCATCAAAACATTATTGTTACCA-ATCCTTAAA-CATTTGTTTAATTCAATTCTAAACCCATGTAAGT-TG-ACC-ATT--AAA-AAAAT-TA--ATG--A--T-ATGTTTTA--TGATATTT-TAT------GGGC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154658 : ACTACACAGAGAAG-A--TA-A-GGA---AAAT-ACAA-AACTTAA--T-AAC-ACTAT-GGAAATGAAGATATTT-AATACCAGTTGGGAAAAATACAGTTATAAAATTATTGCTTTTACCA-G-TTTTAAATCATCTATTTATCTCATTTCCTAATCCAAAAGACG-AA-GTA-ATC--AAA-GATAT-AG--AT---AATCTATTTTATA----ACTTTC-TCT------GGAATGATGGCC--CTGCAAAAA---TCAAA
gi|154659 : ATTACAGTGAGAAA-A--TA-ACAAATATAGTT-A-AA----CTGA--T-AAA-ACTTT-GGAAGAGAAGATATCG-GACTCCATAAGGGAAAATCACAGTTATAATATCACTGCTTCTATCA-A-TGTTAAATCATCTCTTTATTTCTCTTCCAAATCCAAATGAAA-CC-ATT-ATT--AAA-AAC-T-AA--AT---A--GCATATGTTA--TGAGTTTC-TTT------GCGA--A-GGTC--CAGCAAAAA---TAAAGA
gi|154660 : ATTATAAAGAAAAA-A--TA-A-ATA-----TT-ATAA-AATCTAAAAT-TAA-AGAAT-GGTCAAGAAGATATCT-GACTCCATTAGGAAAAATCACTGTTATAAAAAGTTTGCTATTGCCT-A-TTTTGAATCATATATTTGTAGCATTACCAAATCCTAATGAAA-AT-GTA-ATC--AAA-GAAAT-AA--AT---T--CAATTTTTTA--CGATTTCA-TAT------GG------GGGCGACAGCCAAAA---TAAAA
gi|154661 : ATTACAAACAAAAG-A--TA-G-AAA---AATT-A-AAGAAATCAA--T-CAG-TCATT-GGAAAAGGCAACATTT-AACTCCACTAGGGAGAATAACTGTAATCAAAACATTGCTAATACCA-G-CTTTTAACCATCT-TTTATATCACTACCAAA-CCA---GACA-TT-A-A-ATTTGAAA-GATAT-AA--ACAA-A--TAA--CTGTA--TGATTTTT-TTT------TGCA--A-GGGC--CAGCAAAAA---TTAAAA
gi|154662 : ATTATAATGAAAAA-A--TAGA-AAA---AATC-A-AA-AACTCAA--T-CGG-ATTTT-GGAATGGAAGATTTTTTAACTCCAACAGGAAAAATAACTGTAATAAAAAGTTTATTAATTCCG-T-CACTTAACCATCTTTTT-TTTCTATTCCAAGTCCAGAGGACA-AT--TATATC--AAG-CAAAT-AA--AT---A--ACATTTTATA--CAAATTTC-TTT------GGCA--T-GGAC--CTGCAAAAA---TTAAAA
gi|154663 : CTATAAAGACAAA-A--TA-T-CAA---AATTTC-AA-AACCTTA--T-TTA-ACTAG-GGAAACGTAGATTTTT-AACTCCAATAGGTAAAATAACTGTCATCAAAACACTATTGTTAACA-A-CCCTTAACCATATGTTTATTTCAATTCCAAACCCATGTGG-G-TTAACC-ATT--AAA-AACAT-GA--ATG--A--T-ACGTTTTA--TGATTTT--TAT------GGAC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154664 : TAAAGACAAATA--TA-A-AAA---CAAT-G-AA-AAGCTTA--T-CAA-ACTCT-GGCAGTGAAGATATTT-GACACCAGTTGTTAAAAAAACTTACAT-A----TTTAGTTTTACC--A-CATTAAACCATCTACTCATTTCACTAGTTAATCCA-ATGATA-GT-ATA-TTT--AAA-GATTT-AA--GA---A--TAATTATCTATTTTATTTTC-TATTCTTAAAGAA--T-GGCC--CCG--AAAA---TGAAA
gi|154665 : TAAGGAAAAA-AC-TG-A-AAA---AATC-A-AA-AAATCAT--TGCAATACT---GGAACAGAAGGTTTCT-TACACCAATTGGGAAAATCACAGTCATTAAAAGCTTATTATTACCA-T-CCTTAAACCATATTTTTATTTCTCTCCCAAACCCGCCAGACACCT-AT--ATT--AAA-CAAAT-TA--ATGACA--TG-TTTTATA--CG---TTCATAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154666 : TAAAAAAAAA-A-----A-AAA---AATA-A-AA-AAAGCAT--T-GCA-ATATT-GGAACAGTAGGTTTCT-TACACCAATTGG-AAAATCGCAGTCATTAACAGCTTATTATTACCATA-C-TTAAACCA-ATTTTTATTTCTCTCCCAAACCCGCCAGACA-CTTATA--TT--AAA-CAAATTAATGAT---A--TG-TTTTACA--CG---TTCGTAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154667 : TAAGGAAAAA-AC-TG-A-AAA---AATC-A-AA-AAGTCAT--TGCAA---TATAGGAACAGAAGGTTTCT-TACACCAATTGGGAAAATCACAGTCATTAAAAGCTTATTATTACAA-T-CCTTAAACCATAGTTTTATTTCTCTCCCAAAACCGCCAGACACCT-AT--ATT--AAACAAAAT-AATGAC---A--TG-TTTTATA--CG---TTCATAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154668 : TAAGGAAAAA-AACTG-A-AAA---AATC-A-AA-AAATCAT--T-GCA-ATATT-GGAATAGAAGATTTCT-TACAACAATTCGGAAAATCACAGTCAATAAAAGCTTATTATTACCA-T-CCTTAAACCATATTTTTATTTCTCTCCCAAGCCCACCATACACCT-AT--ATT--AAA-CAAAT-AA--ATGACA--TG-TTTTATA--C---CTTCATAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154669 : A-A--TG-A-AAA---AGTT-A-AA-AACTCAA--T-CGG-CTTTT-GGAATAGAAGATTTTT-AACTCCAATAGGAAAAATAACTGTAATTAAAAAATTATTAATTCCG-T-CACTTAACCATCTTTTTATTTCTATTCCAAGTCCAGAGGACA-AT--TATATC--AAG-CAAAT-AA--AT---G--ACATTTTTAA--CAAATTTC-TTT------GGCA--T-GGAC--CTGCAAAAA---TTAAAA
blockSeqs : C T ACTGA TAT AC G G AA GC T C A AT C G A TA A C T T C TTT AT G A A A AAT T TTAACC TG CA TT T TG AATCTA C TTTTAT A TCTTAA TG T C GA T AAC
blockSeqs : C . TAAT . AT . G . GC . C . AT C G A G A C T T C TCT TA A A A A AAC T TTAACC . G TT . TG AAATAA C TGAA G . . . T . C .
blockSeqs : G . TATC . TC . T . A . C . AT C A A G G C T T C TCT A G A A A AAT T CTTATA . G TT . . GACATG T AGAA A . . . C . T .
blockSeqs : C . TAGC . A . C . C . A . AC T T T G T C A T C ACA A C G A T TGT G ATATA . T AA . . GACATG T CGAT A . . . A . A .
blockSeqs : C . TAAC . A . C . T . A . AC T T T A T C A T C ACA A C G A T TGT C ATATA . A AA . . ATGA A TGAT . . . . A . A .
blockSeqs : G . TAGA . C . C . T . A . AT A A T A A G T G A TTA A T A A T AAA A ATATA . A TA . . ATGA T TGAT . . . . C . T .
blockSeqs : G . CTGA . T . T . T . T . GA A A C A T T A G A TCA G G C T T AAT A TGACC . G AA . . GATA T TGAG . . . . T . A .
blockSeqs : A . CTGA . A . A . A . A . AA A A C G T T A A A AGT A T A A A AAT C AAGTA . A TA . . GATA G CGAT . . . . G . A .
blockSeqs : A . TAA . A . C . A . T . AA G A T G T C A G C ACA A T T A A GAG C CCATT . G AA . . AGCA A TGAT . . . . G . A .
blockSeqs : A . TAA . A . C . T . T . TG A T T A T A A A A AGT G A G T T TGT T ATGTA . G CA . . TCAA T CAAA . . . . A . T .
blockSeqs : C . TAG . G . G . C . A . AC T T T A T A A T C ACA T C A A T CCA C ATTAT . C TT . . AACA C TGAT . . . . A . A .
blockSeqs : C . TAT . A . A . C . C . GT A A T G A G T T T AGC A A T A A CCA C GTATA . A AA . . GATA A CAAA . . . . C . C .
blockSeqs : A . TAA . A . A . T . T . CA A T C T A A T G T AGC A C T T C CCA C CCTAT . G AA . . ATAA A AC . . . . A . C .
blockSeqs : A . TGA . A . G . C . A . CA T T C T A A T G T AGC T C T T C CCA C CCTAT . C AA . . GACA A CG . . . . A . C .
blockSeqs : A . A . A . A . G . T . CA A T C T A A T G T AGC T C T T C GAG C CCTAT . C AA . . ATG A CG . . . . A . C .
blockSeqs : A . A . A . C . G . T . TA A T C T A A T A T AAA T A T T C AT . ATTAT . C AA . . ATG T CG . . . . A . C .
blockSeqs : . . . . . . . C . . . TA A T T A T A A . . T T . . T T . . TTAA . C C . . . . C . . . . A . T .
blockSeqCons :
originalCons : ACTATAAAGANAAA-A--TA-A-AAA---AATT-A-AA-AANCTAA--T-CAA-ACTNT-GGAAANGNAGATNTCT-GACNCCANTNGGNAAAATAACTGTCATCAAAACNTTATTATTACCA-A-CNTTAAACCATCTNTTTATTTCACTNCCAAATCCANANGACA-NT-ATA-ATT--AAA-GANAT-AA--AT---A--TGATTTTNTA--CGATTTTC-TAT------GGAA--A-GGNC--CCGCAAAAA---TAAAAA
finalCons : ACTATAAAGANAAA-A--TA-A-AAA---AATT-A-AA-AANCTAA--T-CAA-ACTNT-GGAAANGNAGATNTCT-GACNCCANTNGGNAAAATAACTGTCATCAAAACNTTATTATTACCA-A-CNTTAAACCATCTNTTTATTTCACTNCCAAATCCANANGACA-NT-ATA-ATT--AAA-GANAT-AA--AT---A--TGATTTTNTA--CGATTTTC-TAT------GGAA--A-GGNC--CCGCAAAAA---TAAAAA
Alignments
lowQualScore : 1111111 11111111 222222222
lowQualScore : 1 2 5555555 333 555 2 1 33 55 2 3 2 22 1 1 2 44 1 1 1 3 0 2 444 0 444 3 0 3 1 1 0 777 4 22222222 33 55 11 2 66 444444444 1 666666 8 666666 0 33 2 1 33 2 333
lowQualScore : . . ....... ... ... . . .. .. . . . .. . . . .. . . . . . . ... . ... . . . . . . ... . ........ .. .. .. . .. ......... . ...... . ...... . .. . . .. . ...
lowQualScore : 0 2 1111111 999 333 2 8 11 88 2 2 2 00 0 0 7 00 0 0 0 2 4 8 999 1 333 2 1 2 1 0 2 333 2 33333333 11 00 99 2 11 666666666 8 444444 9 444444 2 11 2 0 11 8 999
consensus : ACTATAAAGANAAA-A--TA-A-AAA---AATT-A-AA-AANCTAA--T-CAA-ACTNT-GGAAANGNAGATNTCT-GACNCCANTNGGNAAAATAACTGTCATCAAAACNTTATTATTACCA-A-CNTTAAACCATCTNTTTATTTCACTNCCAAATCCANANGACA-NT-ATA-ATT--AAA-GANAT-AA--AT---A--TGATTTTNTA--CGATTTTC-TAT------GGAA--A-GGNC--CCGCAAAAA---TAAAAA
Reference ( family-841 ) : ACTATAAAGANAAA-A--TA-A-AAA---AATT-A-AA-AANCTAA--T-CAA-ACTNT-GGAAANGNAGATNTCT-GACNCCANTNGGNAAAATAACTGTCATCAAAACNTTATTATTACCA-A-CNTTAAACCATCTNTTTATTTCACTNCCAAATCCANANGACA-NT-ATA-ATT--AAA-GANAT-AA--AT---A--TGATTTTNTA--CGATTTTC-TAT------GGAA--A-GGNC--CCGCAAAAA---TAAAAA
gi|154652 : ACTATAAAGACAAA-A--TA-ATAAA---AATT-A-AA-AAGCTAA--T-CAA-ACTCT-GGCAATGCAGATGTAT-GACACCACTGGGTAAAATAACTGTCATCAAATCTTTATTAATACCA-A-TATTAAACCATCTATTTATTTCACTACCTAATCCAAATGATA-AT-ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--TGATTTTT-TAT------GGAA--A-GGCC--CCGCAAAAA---TAAAAA
gi|154653 : ACTATAAAGACAAA-A--TA-ATAAA---AATT-A-AA-AAGCTAA--T-AAA-ACGCT-GGCAATGCAGATGTAT-GACACCACTTGGTAAAATAACTGTCATCAAATTTTTATTACTATCA-A-TGTTAAACCATCTATTCATTTCACTACCTAATCCAAATGATA-AT-ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--TGAATTTC-TAT------GGAA--A-GGCC--CTGCAAAAA---TAAAAA
gi|154654 : ACTATAAAGACAAA-A-------------AATT-A-AA-AAGCTAA--T-CAA-ACTCT-GGTAATGCAGATGTAT-GACACAACTTGGTAAAATAACTGTCATCAAATCTTTACTACTACCA-A-TATTAAACCATCTATTCATTTCACTACCTAATCCAAACGGTA-AT-ATA-ATT--AAA-GATTT-AA--AT---A--TGATTTTCTA--AGAATTTT-TAT------GGAA--A-GGTC--CCGCAAAAAAACCAAAAA
gi|154655 : ATTATAAAAAGAAA-A-----A-AAA---AATT--------TTTTT--T-TAA-ACTCT-GGCTATGCAGATATAC-GACGCCACTTGGTAAAATAACTGTCATCAGATCTTTATTACTACAA-A-TGTTAAACAATCTATTCAGTTTACTACCTAATCCAAATGATG-AT-ATA-ATT--AAA-TATTT-AA--A---------------TA--CGATTTTC-TAA------GGAA--A-GGCA--CTGCAAAAA---TGAAAA
gi|154656 : ACTATAAAGACAAA-A--TATC-AAA---AATT-C-AA-AACCTTA--T-TAA-ACTAT-GGAAACGTAGATTTTT-AACTCCACTAGGTAAAATAACTGTCATCAAAACATTATTGTTACCA-A-CCCTTAACCATTTGTTTATTTCAATTCCAAACCCATGTGA-G-TTAACC-ATT--AAA-AAAAT-TA--ATG--A--T-ATGTTTTA--TGATTTTT-TAT------GGGC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154657 : ACTATAAAGACAAA-A--TA-GCAAA---AATT-T-AA-AACCTTA--T-TAG-ACTAT-TGAAACGTAGATTTTT-AACTCCACTAGGTAAAATAACTGTCATCAAAACATTATTGTTACCA-ATCCTTAAA-CATTTGTTTAATTCAATTCTAAACCCATGTAAGT-TG-ACC-ATT--AAA-AAAAT-TA--ATG--A--T-ATGTTTTA--TGATATTT-TAT------GGGC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154658 : ACTACACAGAGAAG-A--TA-A-GGA---AAAT-ACAA-AACTTAA--T-AAC-ACTAT-GGAAATGAAGATATTT-AATACCAGTTGGGAAAAATACAGTTATAAAATTATTGCTTTTACCA-G-TTTTAAATCATCTATTTATCTCATTTCCTAATCCAAAAGACG-AA-GTA-ATC--AAA-GATAT-AG--AT---AATCTATTTTATA----ACTTTC-TCT------GGAATGATGGCC--CTGCAAAAA---TCAAA
gi|154659 : ATTACAGTGAGAAA-A--TA-ACAAATATAGTT-A-AA----CTGA--T-AAA-ACTTT-GGAAGAGAAGATATCG-GACTCCATAAGGGAAAATCACAGTTATAATATCACTGCTTCTATCA-A-TGTTAAATCATCTCTTTATTTCTCTTCCAAATCCAAATGAAA-CC-ATT-ATT--AAA-AAC-T-AA--AT---A--GCATATGTTA--TGAGTTTC-TTT------GCGA--A-GGTC--CAGCAAAAA---TAAAGA
gi|154660 : ATTATAAAGAAAAA-A--TA-A-ATA-----TT-ATAA-AATCTAAAAT-TAA-AGAAT-GGTCAAGAAGATATCT-GACTCCATTAGGAAAAATCACTGTTATAAAAAGTTTGCTATTGCCT-A-TTTTGAATCATATATTTGTAGCATTACCAAATCCTAATGAAA-AT-GTA-ATC--AAA-GAAAT-AA--AT---T--CAATTTTTTA--CGATTTCA-TAT------GG------GGGCGACAGCCAAAA---TAAAA
gi|154661 : ATTACAAACAAAAG-A--TA-G-AAA---AATT-A-AAGAAATCAA--T-CAG-TCATT-GGAAAAGGCAACATTT-AACTCCACTAGGGAGAATAACTGTAATCAAAACATTGCTAATACCA-G-CTTTTAACCATCT-TTTATATCACTACCAAA-CCA---GACA-TT-A-A-ATTTGAAA-GATAT-AA--ACAA-A--TAA--CTGTA--TGATTTTT-TTT------TGCA--A-GGGC--CAGCAAAAA---TTAAAA
gi|154662 : ATTATAATGAAAAA-A--TAGA-AAA---AATC-A-AA-AACTCAA--T-CGG-ATTTT-GGAATGGAAGATTTTTTAACTCCAACAGGAAAAATAACTGTAATAAAAAGTTTATTAATTCCG-T-CACTTAACCATCTTTTT-TTTCTATTCCAAGTCCAGAGGACA-AT--TATATC--AAG-CAAAT-AA--AT---A--ACATTTTATA--CAAATTTC-TTT------GGCA--T-GGAC--CTGCAAAAA---TTAAAA
gi|154663 : CTATAAAGACAAA-A--TA-T-CAA---AATTTC-AA-AACCTTA--T-TTA-ACTAG-GGAAACGTAGATTTTT-AACTCCAATAGGTAAAATAACTGTCATCAAAACACTATTGTTAACA-A-CCCTTAACCATATGTTTATTTCAATTCCAAACCCATGTGG-G-TTAACC-ATT--AAA-AACAT-GA--ATG--A--T-ACGTTTTA--TGATTTT--TAT------GGAC--A-GGAC--CAGCAAAAA---TAAAAA
gi|154664 : TAAAGACAAATA--TA-A-AAA---CAAT-G-AA-AAGCTTA--T-CAA-ACTCT-GGCAGTGAAGATATTT-GACACCAGTTGTTAAAAAAACTTACAT-A----TTTAGTTTTACC--A-CATTAAACCATCTACTCATTTCACTAGTTAATCCA-ATGATA-GT-ATA-TTT--AAA-GATTT-AA--GA---A--TAATTATCTATTTTATTTTC-TATTCTTAAAGAA--T-GGCC--CCG--AAAA---TGAAA
gi|154665 : TAAGGAAAAA-AC-TG-A-AAA---AATC-A-AA-AAATCAT--TGCAATACT---GGAACAGAAGGTTTCT-TACACCAATTGGGAAAATCACAGTCATTAAAAGCTTATTATTACCA-T-CCTTAAACCATATTTTTATTTCTCTCCCAAACCCGCCAGACACCT-AT--ATT--AAA-CAAAT-TA--ATGACA--TG-TTTTATA--CG---TTCATAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154666 : TAAAAAAAAA-A-----A-AAA---AATA-A-AA-AAAGCAT--T-GCA-ATATT-GGAACAGTAGGTTTCT-TACACCAATTGG-AAAATCGCAGTCATTAACAGCTTATTATTACCATA-C-TTAAACCA-ATTTTTATTTCTCTCCCAAACCCGCCAGACA-CTTATA--TT--AAA-CAAATTAATGAT---A--TG-TTTTACA--CG---TTCGTAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154667 : TAAGGAAAAA-AC-TG-A-AAA---AATC-A-AA-AAGTCAT--TGCAA---TATAGGAACAGAAGGTTTCT-TACACCAATTGGGAAAATCACAGTCATTAAAAGCTTATTATTACAA-T-CCTTAAACCATAGTTTTATTTCTCTCCCAAAACCGCCAGACACCT-AT--ATT--AAACAAAAT-AATGAC---A--TG-TTTTATA--CG---TTCATAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154668 : TAAGGAAAAA-AACTG-A-AAA---AATC-A-AA-AAATCAT--T-GCA-ATATT-GGAATAGAAGATTTCT-TACAACAATTCGGAAAATCACAGTCAATAAAAGCTTATTATTACCA-T-CCTTAAACCATATTTTTATTTCTCTCCCAAGCCCACCATACACCT-AT--ATT--AAA-CAAAT-AA--ATGACA--TG-TTTTATA--C---CTTCATAT------GGAA--A-GGAT--CCGCAAAGA---TAAAAA
gi|154669 : A-A--TG-A-AAA---AGTT-A-AA-AACTCAA--T-CGG-CTTTT-GGAATAGAAGATTTTT-AACTCCAATAGGAAAAATAACTGTAATTAAAAAATTATTAATTCCG-T-CACTTAACCATCTTTTTATTTCTATTCCAAGTCCAGAGGACA-AT--TATATC--AAG-CAAAT-AA--AT---G--ACATTTTTAA--CAAATTTC-TTT------GGCA--T-GGAC--CTGCAAAAA---TTAAAA