lowQualScore : 1 11 1 1 1 11 11111 22222222222222 11111 11 11111 222222 1111111111111 111 22222222 111111 11111111111 1 22222222222 1 11111 2222222222222222
lowQualScore : 2 0 0 66 3 5 0 6 1 3 6 88 11111 0 77 11111111111111 4 6 11111 66 22 11111 9999 4 6 4 1 0 66 000000 2222222222222 4 000 8888 0 55 44444444 11 5 6 333333 0 11111111111 6 3 3 999999 7 6666 2 5 99999999999 3 888888 2 55555 77 4 3 2 0 555 22222 1 999999 2222222222222222 4 3 5 777 2 3 3 0
lowQualScore : . . . .. . . . . . . . .. ..... . .. .............. . . ..... .. .. ..... .... . . . . . .. ...... ............. . ... .... . .. ........ .. . . ...... . ........... . . . ...... . .... . . ........... . ...... . ..... .. . . . . ... ..... . ...... ................ . . . ... . . . .
lowQualScore : 0 0 2 00 5 0 0 5 0 3 7 33 88888 1 99 11111111111111 3 2 99999 11 22 11111 4444 4 2 4 1 1 11 888888 4444444444444 4 222 5555 2 00 66666666 00 2 7 111111 2 55555555555 2 1 1 888888 1 1111 0 0 99999999999 0 666666 9 77777 44 8 3 9 7 000 11111 2 666666 2222222222222222 1 3 9 555 6 1 3 5
consensus : AATTCAGCAGAGATTACAAGCTGACTTAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAANTAAGTGTATGACAATAGGAACAAGACAAAAA-CTATCAGTTCAAAAGGACTGCCTTACTNTTACCATAAATGCAGGGATTTT-GCAAAATTCTCAATGTGAGAAACTTTTAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAATTATTTTACAGCGNATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGNAACTGC-ACTA-----AAGATGGGCT---T---G---ATCGA-A-T-A-----CTAAAATTACAGA----AAAGAGCAGCAAGAATTATCCTCGATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGAAC-TTAACTGGAT---G-----CCAGT------AAAGATA-----A------GGATTCAATA-TCANAAA--CTANTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
Reference ( gi|17907 ) : AATTCAGCAGAGATTACAAGCCGACTTAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAACTAAGTGTATGACAATAGGAACAAGACAAAAG-CTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCCGGGATTTT-GCAAAATTCTCAATGTGAGAAACTTTTAGGTGTAAAAATTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAATTATTTTACAGCGGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGTAACTGC-ACTA-----AAGATGGGCT---T---G---ATCGA-A-T-A-----TTAAAATTACAGA----AAAGAGCAGCAAGAATAATCCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGTAC-TTAACTGGAT---G-----CCAGT------AAATATT-----A------GGATTCAGTA-TCATAAA--CTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17909 : AATTCAGCAGAGATTAAAAGCTGACTTAACTTCTATAAATAAATGTTGTTCAAGAAATATGATGTATATTAATACAGAAAATACTAAGTGTATGACAATAGGAACAAGACAAAAA-CTATCAGTTCAAAAGGGCTGCCTTACTCTTACCATAAATGCAGGGATTTT-GCAAAATTTTCAATGTGAGAAATTTTTATGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-CGAAATTTATTTTACAGTGGATG----TAAACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTTGGGTAACTGC-ACTA-----AAGATGGACT---T---G---ATCGA-A-T-A-----CTAAAATTACAGATCTTAAAGAGCAGTAAGAATTATTCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-AGAGCCTTTATTTAAAGTAC-TTAACTGGAT---G-----CCAGT------AAAGATA-----A------GGACTCAATA-CCATAAA--CTGTTTCTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATACTTGT
gi|17908 : AATTTAGCAGAGATTACAAGCCGACATAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAAATAAGTGTATGACAATAGAAACAAGACAAAAA-CTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTTTGCAAAATTCTCAATGTGAAATACTTTTAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACAGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGACAATTATTTTACAGCAGATAATTATATACTAC--CAT-TAATT--GATTACTGTTGCACTCTTTGGGGTAACTGC-ACTA-----AAGATGGGCT---T---G---ATCGA-A-T-A-----CTAAAATTACAGA----AAAGAGCAGCAAGGATTATCCTCAATG---AA------GATCCTCT-----TTC-AGTCT-C-AAAGCCTTTATTTAAAGAAC-TTATCTGGAT---A-----CCAGT------AAATATA-----A------GGATTCAATA-TCATAAA--TGAATACTTG--TATAATT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17910 : AGTTCAGAAGAGATTACAAGCTCACTTGACTTCTATAAATAAATGGTGTTCAAGAAAAATGATGTATATCAATACAGAAAAAAATAAGTGTGAGACAATAATAACAAGACAAAAAACTATCAGTTCAAAAGGACTGTCCTACTTTTGTCATAACTGCATGGATCTT-GTAAAATTCTCAATGTGAGAAACTTTAAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GACAAAT--AAACCAT-------ACA----TGCACTGTCATCTCATCACCCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAAGT--ATCT----A-CA-----TCTTAA
gi|17911 : AATTCAGCAGAGATTACAAGCTGACTTAACTTCTATAAAACAATAGTGTACAAGAAATATGATGTATATTAATACAGAAAAAACTAAAT
gi|17912 : ACGATGTATATTAATACTGAAAAAA-TAAGTGTATGACAATAGGAACAAGACAAAAA-TTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTT-G-AAAATTCTCAATGTGAGAAACTGTTAGGTATAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAA-T--AAACCAC-------ATA----TGTACTGTCATCTCATCACGCATATATACCT--TT-----TGT----GAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAAGTATTTTACAGCAGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGTAACTGC-ACTA-----AAGATGGGCT---T---G---ATCGA-A-T-A-----CTAAAATTACAGA----AAAGAGCAGCAAGAATTATCCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-GAAGCCTTTATTTAAAGAAC-TTAACTGGAT---G-----CCAGT------AAAGATA-----A------GGATTCGATA-TCATAAA--CTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17914 : GTGAAAAACTTCTGGGAGTAACAATTGACAACACA-CTAACATGGACTCAA-----CAAGTTGAAAACACTCTAAAAAAA----TGCAAT-TC--CTTAT------TAT--ACTTACTT-----GGC----CGA-A--T-AAAATACT--ATTT----ATCAATACCTATT-------AGGAAATTATTTTACAATTCTTA----CATACTTC--C-T-CATCTA-GATTATTGCTGTACAATATGGGGAAATTGCAACT---------CTGACCTATCT---G---A-CAACG-T-A-----TTAAAATTTCAAA----AACGTGCTGCAAGACTTATCCTTGATA---AA------GACATTGA-----TAC-ACCAT-C-TGAAACATTATTTAATGATC-TAAAATGGAT---G-----
gi|17913 : GTGAAAAACTTCTGGGAGTAACAATTGACAACACA-CTAACATGGACTCAACAAGCTGAAA--ACACCCT-------AAAAAAATGCAAT-TC--CTTAT------TAT--ACTTACTT-----GGC----CAA-T--T-AAAATACT--ATTTGTCAA-TA-----CCT----ACT-AGGAAATTATTTTACAATTCTTA----CATACTTCTTCATCTAA-----ACTATTGCTGTACAATATGGGGAAATTGCAACT---------CTGACCTATCT---G---A-CAACA-T-A-----TTAAAATTTCAAA----AACGTGCTGCAAGACTTATCCTTGATG---AA------GACATTGA-----TGC-ACCAT-CTGAAACATTT-TTTAATGATC-TAAAATGGAT---G-----
gi|17915 : AT--AAACTAT-------ATAAA--T-CACTG-------ATTA---ATAA--AGTT--TTCTTGCTGT----CTA-ACATCAAGAAA-T--GTCTT---C-CA-----T-TAGAAACA-AGAATACTATATTATAAC----A----TATACAAT--CAG-TCTTG--GATTATGGATACACTATTTGGGGAGACTGC-TCTGGTTACAATATCAGTA---G---A---ATTGG-A-----------AAAATC-CAAA----AGAGAGCAGCTAGAATCAGACTCGATATGCCATAT---GATTCTC--------C-A---T-C-TAAACCATTGTTTCAGGAGC-TTAAATGG-T-------------T------AAATATT-----ATATTGCAAATCAAATCTTCAAAAA--GCAATACAAGTTTATAAAT-GCTTA
gi|17916 : ATTTCATCATATATCT--GGCT--AT-----TAT----CAA-AGGT-AAAAGATT--ATCTTT--C-CA-----TC---AACCATAGAACGTTATATTATAAAGCATA----CATACAAT--CAC---ATTTCAATTATTGTTGTACAGTTTGGGGAAA
gi|17917 : TAT--ACCT--TT-----TATATTGCATTAAAT-A-----CTTCATTG----A-CA-----TCCCTA--CA-CGCAAACTCTTTTTTAATGCATA----TATACTAA--CAC---ATTTAGATTATTGTTGTACCATTTGGGGCAACTGC-AATT-----CAGA---ACT---T--------TTGA-A-C-AATCTCCTAAAATTCCAAA----AACGTGCAGCGAGAATAATACTCAACA----A------GA--CTATGATTATCC-ATCTG-C-AGAA---TTATTTGATCAAC-TTGGCTGGAT---GACATTCCAGG------AA----------A------GAATCCAATA-TAA-AAAGGCTACT-CTTGTTTTCAAAT-CTCTAAACAATCTGGCACC
gi|17918 : -AGAAAATTATTTTACAGTGGATA----TTTACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTTGGGTAACTGC-ACTA-----AAAATGGGCT---T---G---ATCGA-A-T-A-----CTAAAATTACAGA----AAAGAGCAGCAAGAATTATCCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGAAT-TTAACTGGAT---G-----CCAGT------AAATATA-----A------GGATTCAGTA-TCATAAA--CTATTACTTGTCTATAAAT-TCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17919 : TA----CATTTTAC--CAC---ATTTAGATTGCTGTTGTGTAATTTGGGGAAAATG----TA-----ATGTTTCACT---TGTAG---ATTAA-ATT-G-----TT-AGGTTTCAAA----AGAGAGCTGCTAGACTTATTCTCGATA---AAAATTACGATACTCC-----TTCTA-----C-AGAA---TTATTCACAGAGA-TTAAATGGAT---G------AAGTTTCTTGAAAGAGT-----A------AAATT------TCAAAAA--GCAGTACTTATATATAAAT-CATTTAATTATCAGGCTCCAGCATATCT
gi|17920 : TACT-C--CAT-TTA----GATTACTGTTGTGTTATTTGGGGACATTG----TA-----ATGATTCATT---T---GTAGATAAA-A-TTG-----TTAGATTT-CAAA----AGAGAGCTTTA-GATTTATTCTCGATA---AAAGTTACGATATTCC-----TTC-TACT-----GAATGTTT---CACAGAGA-TTAAATGGATTACGTTT--CC--T------GAA---------A------GAGTTAAATT-TCAAAAA--TTAGTACTTATATATAAATCATTTAAA-GACCAGGCTCCTGCATATCT
gi|17921 : ACTGTT---AGT--CTGC-ACTA-----AAGATGGGCT---T---G---ATTTA-A-T-A-----CAAAAATTATAGA----AAAGAGCAGCAAAAATTATCCTCAGTG---CA------GATCTTCT-----TTC-AGCCT-C-AGAGTCTTTATTTAAAGAAC-TTAACTGAAT---G-----TCAGT------AAAGATA-----A------GGATTCAATA-TCTTAAA--TTATTAATTGTCTATAAAG-GCTTGAATTTC--AGTACCTGAATATTTGT
gi|17922 : -ACTT-----AAGATGGGCT---A---G---ACTGA-C-T-A-----CTAAAATTACAAA----AA----------GAATTATCCTCAATG---CA------GATCCTTT-----TTC-AGCCT-A-AGAGCCTTTATTTAAATAAC-TTAACTGGAT---G-----CCAGT------AAAGATA-----A------GGATTCAAAA-TCAAAAA--TTATTACTTGTCTATAAAT-GCTTAAATTCCAAGGCACCTGAATATTTGT
gi|17923 : T---T---G---ATCTA-A-T-A-----CTAAAACTACAGA----AAAGAGCAGCAAGAATTATCATTA-TG---CA------GATTCTTT-----TCC-AGCAT-C-AGATCCTTTATTTAAA-TACCTTAACTGAAT---G-----CCAGT------AAATATA-----A------GGATTCAGTA-TCATAAA--TTATTACTTGTGTATACGT-GCTTAAAAGCCCAGGCACCTGAATATTTGT
gi|17924 : TTTCAAA----AGAGAGCTGCTAGACTTATTCTCGATA---AAAATTACGATACTCC-----TTC-----TAC-AGAA---TTATTCACAGAGC-TTAAATGGAT---G-----AC-GT-----------TTCCTTAA------AGAGTTAATA-TCAAACA--GCAGTACTTATATATAAAT-CATGTGATGACCAGGCTCCTGAATATCT
Alignments
lowQualScore : 1 11 111 1111111 1111 11 11111 1111 11111 11111111 111111 111 222222
lowQualScore : 7 8 1 8 3 1 4 55 000 0 66 6666666 7777 2 4 2 555 55 11 00000 8888 4 4 4 0 55 8888 4 00000 66 33 4 666 7777 44 88888888 11 1 6 111111 000 555 555 5 77777 4 5555 1 1 8888 777777 2 777777 2 4 0 2 66 3 0 444 5555 888888 1 3 888888 3 1 3 1 1 2 3
lowQualScore : . . . . . . . .. ... . .. ....... .... . . . ... .. .. ..... .... . . . . .. .... . ..... .. .. . ... .... .. ........ .. . . ...... ... ... ... . ..... . .... . . .... ...... . ...... . . . . .. . . ... .... ...... . . ...... . . . . . . .
lowQualScore : 5 0 0 0 2 4 3 77 000 3 99 2222222 5555 5 6 9 999 55 00 00000 5555 0 7 0 1 55 0000 0 00000 55 77 0 111 7777 66 88888888 00 0 2 444444 000 000 000 7 11111 5 7777 3 9 0000 777777 1 444444 7 4 5 7 22 8 1 777 5555 888888 5 1 888888 1 0 1 9 0 1 1
consensus : AATTCAGCAGAGATTACAAGCCGACTTAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAACTAAGTGTATGACAATAGGAACAAGACAAAA-ACTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTT-GCAAAATTCTCAATGTGAGAAACTTTTAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAATTATTTTACAGCGGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGNAACTGC-ACTA-----AAGATGGGCT---T---G---ATCGA-ATA-----CTAAAATTNCAGA----AAAGAGCAGCAAGAATTATCCTCGATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCAATA-TCANAA-ACTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
Reference ( family-838 ) : AATTCAGCAGAGATTACAAGCTGACTTAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAANTAAGTGTATGACAATAGGAACAAGACAAAA-ACTATCAGTTCAAAAGGACTGCCTTACTNTTACCATAAATGCAGGGATTTT-GCAAAATTCTCAATGTGAGAAACTTTTAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAATTATTTTACAGCGNATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGNAACTGC-ACTA-----AAGATGGGCT---T---G---ATCGA-ATA-----CTAAAATTACAGA----AAAGAGCAGCAAGAATTATCCTCGATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCAATA-TCANAA-ACTANTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17907 : AATTCAGCAGAGATTACAAGCCGACTTAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAACTAAGTGTATGACAATAGGAACAAGACAAAA-GCTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCCGGGATTTT-GCAAAATTCTCAATGTGAGAAACTTTTAGGTGTAAAAATTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAATTATTTTACAGCGGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGTAACTGC-ACTA-----AAGATGGGCT---T---G---ATCGA-ATA-----TTAAAATTACAGA----AAAGAGCAGCAAGAATAATCCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGTACTTAACTGGAT---G---CCAGT------AAATA-TTA------GGATTCAGTA-TCATAA-ACTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17908 : AATTTAGCAGAGATTACAAGCCGACATAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAAATAAGTGTATGACAATAGAAACAAGACAAAA-ACTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTTTGCAAAATTCTCAATGTGAAATACTTTTAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACAGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGACAATTATTTTACAGCAGATAATTATATACTAC--CAT-TAATT--GATTACTGTTGCACTCTTTGGGGTAACTGC-ACTA-----AAGATGGGCT---T---G---ATCGA-ATA-----CTAAAATTACAGA----AAAGAGCAGCAAGGATTATCCTCAATG---AA------GATCCTCT-----TTC-AGTCT-C-AAAGCCTTTATTTAAAGAACTTATCTGGAT---A---CCAGT------AAATA-TAA------GGATTCAATA-TCATAA-ATGAATACTTG--TATAATT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17909 : AATTCAGCAGAGATTAAAAGCTGACTTAACTTCTATAAATAAATGTTGTTCAAGAAATATGATGTATATTAATACAGAAAATACTAAGTGTATGACAATAGGAACAAGACAAAA-ACTATCAGTTCAAAAGGGCTGCCTTACTCTTACCATAAATGCAGGGATTTT-GCAAAATTTTCAATGTGAGAAATTTTTATGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-CGAAATTTATTTTACAGTGGATG----TAAACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTTGGGTAACTGC-ACTA-----AAGATGGACT---T---G---ATCGA-ATA-----CTAAAATTACAGATCTTAAAGAGCAGTAAGAATTATTCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-AGAGCCTTTATTTAAAGTACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGACTCAATA-CCATAA-ACTGTTTCTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATACTTGT
gi|17910 : AGTTCAGAAGAGATTACAAGCTCACTTGACTTCTATAAATAAATGGTGTTCAAGAAAAATGATGTATATCAATACAGAAAAAAATAAGTGTGAGACAATAATAACAAGACAAAAAACTATCAGTTCAAAAGGACTGTCCTACTTTTGTCATAACTGCATGGATCTT-GTAAAATTCTCAATGTGAGAAACTTTAAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GACAAAT--AAACCAT-------ACA----TGCACTGTCATCTCATCACCCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAAGT--ATCT----A-CA-----TCTTAA
gi|17911 : AATTCAGCAGAGATTACAAGCTGACTTAACTTCTATAAAACAATAGTGTACAAGAAATATGATGTATATTAATACAGAAAAAACTAAAT
gi|17912 : ACGATGTATATTAATACTGAAAAAA-TAAGTGTATGACAATAGGAACAAGACAAAA-ATTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTT-G-AAAATTCTCAATGTGAGAAACTGTTAGGTATAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAA-T--AAACCAC-------ATA----TGTACTGTCATCTCATCACGCATATATACCT--TT-----TGT----GAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAAGTATTTTACAGCAGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGTAACTGC-ACTA-----AAGATGGGCT---T---G---ATCGA-ATA-----CTAAAATTACAGA----AAAGAGCAGCAAGAATTATCCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-GAAGCCTTTATTTAAAGAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCGATA-TCATAA-ACTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17913 : GTGAAAAACTTCTGGGAGTAACAATTGACAACACA-CTAACATGGACTCAACAAGCTGAAA--ACACCCT-------AAAAAAATGCAAT-TC--CTTAT------TAT--ACTTACTT-----GGC----CAA-T--T-AAAATACT--ATTTGTCAA-TA-----CCT----ACT-AGGAAATTATTTTACAATTCTTA----CATACTTCTTCATCTAA-----ACTATTGCTGTACAATATGGGGAAATTGCAACT---------CTGACCTATCT---G---A-CAACATA-----TTAAAATTTCAAA----AACGTGCTGCAAGACTTATCCTTGATG---AA------GACATTGA-----TGC-ACCAT-CTGAAACATTT-TTTAATGATCTAAAATGGAT---G---
gi|17914 : GTGAAAAACTTCTGGGAGTAACAATTGACAACACA-CTAACATGGACTCAA-----CAAGTTGAAAACACTCTAAAAAAA----TGCAAT-TC--CTTAT------TAT--ACTTACTT-----GGC----CGA-A--T-AAAATACT--ATTT----ATCAATACCTATT-------AGGAAATTATTTTACAATTCTTA----CATACTTC--C-T-CATCTA-GATTATTGCTGTACAATATGGGGAAATTGCAACT---------CTGACCTATCT---G---A-CAACGTA-----TTAAAATTTCAAA----AACGTGCTGCAAGACTTATCCTTGATA---AA------GACATTGA-----TAC-ACCAT-C-TGAAACATTATTTAATGATCTAAAATGGAT---G---
gi|17915 : AT--AAACTAT-------ATAAA--T-CACTG-------ATTA---ATAA--AGTT--TTCTTGCTGT----CTA-ACATCAAGAAA-T--GTCTT---C-CA-----T-TAGAAACA-AGAATACTATATTATAAC----A----TATACAAT--CAG-TCTTG--GATTATGGATACACTATTTGGGGAGACTGC-TCTGGTTACAATATCAGTA---G---A---ATTGG-A---------AAAATC-CAAA----AGAGAGCAGCTAGAATCAGACTCGATATGCCATAT---GATTCTC--------C-A---T-C-TAAACCATTGTTTCAGGAGCTTAAATGG-T-----------T------AAATA-TTATATTGCAAATCAAATCTTCAAAA-AGCAATACAAGTTTATAAAT-GCTTA
gi|17916 : ATTTCATCATATATCT--GGCT--AT-----TAT----CAA-AGGT-AAAAGATT--ATCTTT--C-CA-----TC---AACCATAGAACGTTATATTATAAAGCATA----CATACAAT--CAC---ATTTCAATTATTGTTGTACAGTTTGGGGAAA
gi|17917 : TAT--ACCT--TT-----TATATTGCATTAAAT-A-----CTTCATTG----A-CA-----TCCCTA--CA-CGCAAACTCTTTTTTAATGCATA----TATACTAA--CAC---ATTTAGATTATTGTTGTACCATTTGGGGCAACTGC-AATT-----CAGA---ACT---T--------TTGA-ACAATCTCCTAAAATTCCAAA----AACGTGCAGCGAGAATAATACTCAACA----A------GA--CTATGATTATCC-ATCTG-C-AGAA---TTATTTGATCAACTTGGCTGGAT---G---ACATT------CCAGG-AAA------GAATCCAATA-TAAAAAGGCTACT-CTTGTTTTCAAAT-CTCTAAACAATCTGGCACC
gi|17918 : -AGAAAATTATTTTACAGTGGATA----TTTACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTTGGGTAACTGC-ACTA-----AAAATGGGCT---T---G---ATCGA-ATA-----CTAAAATTACAGA----AAAGAGCAGCAAGAATTATCCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGAATTTAACTGGAT---G---CCAGT------AAATA-TAA------GGATTCAGTA-TCATAA-ACTATTACTTGTCTATAAAT-TCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17919 : TA----CATTTTAC--CAC---ATTTAGATTGCTGTTGTGTAATTTGGGGAAAATG----TA-----ATGTTTCACT---TGTAG---ATTAA-ATT-----GTTAGGTTTCAAA----AGAGAGCTGCTAGACTTATTCTCGATA---AAAATTACGATACTCC-----TT-----CTAC-AGAA---TTATTCACAGAGATTAAATGGAT---G----AAGTTTCTTGAAAGAGTAA------------AATT-TCAAAA-AGCAGTACTTATATATAAAT-CATTTAATTATCAGGCTCCAGCATATCT
gi|17920 : TACT-C--CAT-TTA----GATTACTGTTGTGTTATTTGGGGACATTG----TA-----ATGATTCATT---T---GTAGATAAA-ATT-----GTTAGATTTCAAA----AGAGAGCTTTA-GATTTATTCTCGATA---AAAGTTACGATATTCC-----TTC-TACT-----GAATGTTT---CACAGAGATTAAATGGATTACGTTTCCTG-------AAAGA------------GTTAAATT-TCAAAA-ATTAGTACTTATATATAAATCATTTAAA-GACCAGGCTCCTGCATATCT
gi|17921 : CTGC-ACTA-----AAGATGGGCT---T---G---ATTTA-ATA-----CAAAAATTATAGA----AAAGAGCAGCAAAAATTATCCTCAGTG---CA------GATCTTCT-----TTC-AGCCT-C-AGAGTCTTTATTTAAAGAACTTAACTGAAT---G---TCAGT------AAAGA-TAA------GGATTCAATA-TCTTAA-ATTATTAATTGTCTATAAAG-GCTTGAATTTC--AGTACCTGAATATTTGT
gi|17922 : actgttagt-ACTT-----AAGATGGGCT---A---G---ACTGA-CTA-----CTAAAATTACAAA----AA----------GAATTATCCTCAATG---CA------GATCCTTT-----TTC-AGCCT-A-AGAGCCTTTATTTAAATAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCAAAA-TCAAAA-ATTATTACTTGTCTATAAAT-GCTTAAATTCCAAGGCACCTGAATATTTGT
gi|17923 : T---T---G---ATCTA-ATA-----CTAAAACTACAGA----AAAGAGCAGCAAGAATTATCATT-ATG---CA------GATTCTTT-----TCC-AGCAT-C-AGATCCTTTATTTAAATACCTTAACTGAAT---G---CCAGT------AAATA-TAA------GGATTCAGTA-TCATAA-ATTATTACTTGTGTATACGT-GCTTAAAAGCCCAGGCACCTGAATATTTGT
gi|17924 : TTTCAAA----AGAGAGCTGCTAGACTTATTCTCGATA---AAAATTACGATACTCC-----TTCTA-----C-AGAA---TTATTCACAGAGCTTAAATGGAT---G---AC-GT------TTCCT-TAA------AGAGTTAATA-TCAAAC-AGCAGTACTTATATATAAAT-CATGTGATGACCAGGCTCCTGAATATCT
Alignments
lowQualScore : 1 11 111 1111111 1111 11 11111 1111 11111 11111111 1111111 222222
lowQualScore : 6 8 1 8 3 1 4 55 000 0 66 6666666 7777 2 4 2 555 55 11 00000 8888 4 4 4 0 55 8888 4 00000 66 33 4 666 7777 44 88888888 11 1 6 9999 0 22 3333333 5 77777 1 5555 2 0 1 8888 777777 2 777777 2 4 0 2 66 3 0 444 5555 888888 1 3 888888 3 1 3 1 1 2 3
lowQualScore : . . . . . . . .. ... . .. ....... .... . . . ... .. .. ..... .... . . . . .. .... . ..... .. .. . ... .... .. ........ .. . . .... . .. ....... . ..... . .... . . . .... ...... . ...... . . . . .. . . ... .... ...... . . ...... . . . . . . .
lowQualScore : 7 0 0 0 2 4 3 77 000 3 99 2222222 5555 5 6 9 999 55 00 00000 5555 0 7 0 1 55 0000 0 00000 55 77 0 222 7777 66 88888888 00 0 2 1111 5 88 9999999 7 11111 0 7777 8 5 9 0000 777777 1 444444 7 4 5 7 22 8 1 777 5555 888888 5 1 888888 1 0 1 9 7 1 1
consensus : AATTCAGCAGAGATTACAAGCCGACTTAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAACTAAGTGTATGACAATAGGAACAAGACAAAA-ACTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTT-GCAAAATTCTCAATGTGAGAAACTTTTAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAATTATTTTACAGCGGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGNAACTGC-ACTA---AAGATGGGCT---T---GATCGA-ATA-----CTAAAATTNCAGA----AAAGAGCAGCAAGAATTATCCTCGATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCAATA-TCANAA-ACTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
Reference ( family-838 ) : AATTCAGCAGAGATTACAAGCCGACTTAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAACTAAGTGTATGACAATAGGAACAAGACAAAA-ACTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTT-GCAAAATTCTCAATGTGAGAAACTTTTAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAATTATTTTACAGCGGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGNAACTGC-ACTA---AAGATGGGCT---T---GATCGA-ATA-----CTAAAATTNCAGA----AAAGAGCAGCAAGAATTATCCTCGATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCAATA-TCANAA-ACTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17907 : AATTCAGCAGAGATTACAAGCCGACTTAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAACTAAGTGTATGACAATAGGAACAAGACAAAA-GCTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCCGGGATTTT-GCAAAATTCTCAATGTGAGAAACTTTTAGGTGTAAAAATTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAATTATTTTACAGCGGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGTAACTGC-ACTA---AAGATGGGCT---T---GATCGA-ATA-----TTAAAATTACAGA----AAAGAGCAGCAAGAATAATCCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGTACTTAACTGGAT---G---CCAGT------AAATA-TTA------GGATTCAGTA-TCATAA-ACTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17908 : AATTTAGCAGAGATTACAAGCCGACATAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAAATAAGTGTATGACAATAGAAACAAGACAAAA-ACTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTTTGCAAAATTCTCAATGTGAAATACTTTTAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACAGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGACAATTATTTTACAGCAGATAATTATATACTAC--CAT-TAATT--GATTACTGTTGCACTCTTTGGGGTAACTGC-ACTA---AAGATGGGCT---T---GATCGA-ATA-----CTAAAATTACAGA----AAAGAGCAGCAAGGATTATCCTCAATG---AA------GATCCTCT-----TTC-AGTCT-C-AAAGCCTTTATTTAAAGAACTTATCTGGAT---A---CCAGT------AAATA-TAA------GGATTCAATA-TCATAA-ATGAATACTTG--TATAATT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17909 : AATTCAGCAGAGATTAAAAGCTGACTTAACTTCTATAAATAAATGTTGTTCAAGAAATATGATGTATATTAATACAGAAAATACTAAGTGTATGACAATAGGAACAAGACAAAA-ACTATCAGTTCAAAAGGGCTGCCTTACTCTTACCATAAATGCAGGGATTTT-GCAAAATTTTCAATGTGAGAAATTTTTATGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-CGAAATTTATTTTACAGTGGATG----TAAACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTTGGGTAACTGC-ACTA---AAGATGGACT---T---GATCGA-ATA-----CTAAAATTACAGATCTTAAAGAGCAGTAAGAATTATTCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-AGAGCCTTTATTTAAAGTACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGACTCAATA-CCATAA-ACTGTTTCTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATACTTGT
gi|17910 : AGTTCAGAAGAGATTACAAGCTCACTTGACTTCTATAAATAAATGGTGTTCAAGAAAAATGATGTATATCAATACAGAAAAAAATAAGTGTGAGACAATAATAACAAGACAAAAAACTATCAGTTCAAAAGGACTGTCCTACTTTTGTCATAACTGCATGGATCTT-GTAAAATTCTCAATGTGAGAAACTTTAAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GACAAAT--AAACCAT-------ACA----TGCACTGTCATCTCATCACCCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAAGT--ATCT----A-CA-----TCTTAA
gi|17911 : AATTCAGCAGAGATTACAAGCTGACTTAACTTCTATAAAACAATAGTGTACAAGAAATATGATGTATATTAATACAGAAAAAACTAAAT
gi|17912 : ACGATGTATATTAATACTGAAAAAA-TAAGTGTATGACAATAGGAACAAGACAAAA-ATTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTT-G-AAAATTCTCAATGTGAGAAACTGTTAGGTATAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAA-T--AAACCAC-------ATA----TGTACTGTCATCTCATCACGCATATATACCT--TT-----TGT----GAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAAGTATTTTACAGCAGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGTAACTGC-ACTA---AAGATGGGCT---T---GATCGA-ATA-----CTAAAATTACAGA----AAAGAGCAGCAAGAATTATCCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-GAAGCCTTTATTTAAAGAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCGATA-TCATAA-ACTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17913 : GTGAAAAACTTCTGGGAGTAACAATTGACAACACA-CTAACATGGACTCAACAAGCTGAAA--ACACCCT-------AAAAAAATGCAAT-TC--CTTAT------TAT--ACTTACTT-----GGC----CAA-T--T-AAAATACT--ATTTGTCAA-TA-----CCT----ACT-AGGAAATTATTTTACAATTCTTA----CATACTTCTTCATCTAA-----ACTATTGCTGTACAATATGGGGAAATTGCAACT-------CTGACCTATCT---GA-CAACATA-----TTAAAATTTCAAA----AACGTGCTGCAAGACTTATCCTTGATG---AA------GACATTGA-----TGC-ACCAT-CTGAAACATTT-TTTAATGATCTAAAATGGAT---G---
gi|17914 : GTGAAAAACTTCTGGGAGTAACAATTGACAACACA-CTAACATGGACTCAA-----CAAGTTGAAAACACTCTAAAAAAA----TGCAAT-TC--CTTAT------TAT--ACTTACTT-----GGC----CGA-A--T-AAAATACT--ATTT----ATCAATACCTATT-------AGGAAATTATTTTACAATTCTTA----CATACTTC--C-T-CATCTA-GATTATTGCTGTACAATATGGGGAAATTGCAACT-------CTGACCTATCT---GA-CAACGTA-----TTAAAATTTCAAA----AACGTGCTGCAAGACTTATCCTTGATA---AA------GACATTGA-----TAC-ACCAT-C-TGAAACATTATTTAATGATCTAAAATGGAT---G---
gi|17915 : AT--AAACTAT-------ATAAA--T-CACTG-------ATTA---ATAA--AGTT--TTCTTGCTGT----CTA-ACATCAAGAAA-T--GTCTT---C-CA-----T-TAGAAACA-AGAATACTATATTATAAC----A----TATACAAT--CAG-TCTTG--GATTATGGATACACTATTTGGGGAGACTGC-TCTGGTTACAATA---T---C---AGTAGA-ATT-----GGAAAAATCCAAA----AGAGAGCAGCTAGAATCAGACTCGATATGCCATAT---GATTCTC--------C-A---T-C-TAAACCATTGTTTCAGGAGCTTAAATGG-T-----------T------AAATA-TTATATTGCAAATCAAATCTTCAAAA-AGCAATACAAGTTTATAAAT-GCTTA
gi|17916 : ATTTCATCATATATCT--GGCT--AT-----TAT----CAA-AGGT-AAAAGATT--ATCTTT--C-CA-----TC---AACCATAGAACGTTATATTATAAAGCATA----CATACAAT--CAC---ATTTCAATTATTGTTGTACAGTTTGGGGAAA
gi|17917 : TAT--ACCT--TT-----TATATTGCATTAAAT-A-----CTTCATTG----A-CA-----TCCCTA--CA-CGCAAACTCTTTTTTAATGCATA----TATACTAA--CAC---ATTTAGATTATTGTTGTACCATTTGGGGCAACTGC-AATT---CAGA---ACT---T-----TTGA-ACAATCTCCTAAAATTCCAAA----AACGTGCAGCGAGAATAATACTCAACA----A------GA--CTATGATTATCC-ATCTG-C-AGAA---TTATTTGATCAACTTGGCTGGAT---G---ACATT------CCAGG-AAA------GAATCCAATA-TAAAAAGGCTACT-CTTGTTTTCAAAT-CTCTAAACAATCTGGCACC
gi|17918 : -AGAAAATTATTTTACAGTGGATA----TTTACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTTGGGTAACTGC-ACTA---AAAATGGGCT---T---GATCGA-ATA-----CTAAAATTACAGA----AAAGAGCAGCAAGAATTATCCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGAATTTAACTGGAT---G---CCAGT------AAATA-TAA------GGATTCAGTA-TCATAA-ACTATTACTTGTCTATAAAT-TCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17919 : TA----CATTTTAC--CAC---ATTTAGATTGCTGTTGTGTAATTTGGGGAAAATG----TA---ATGTTTCACT---TGTAGATTAA-ATT-----GTTAGGTTTCAAA----AGAGAGCTGCTAGACTTATTCTCGATA---AAAATTACGATACTCC-----TT-----CTAC-AGAA---TTATTCACAGAGATTAAATGGAT---G----AAGTTTCTTGAAAGAGTAA------------AATT-TCAAAA-AGCAGTACTTATATATAAAT-CATTTAATTATCAGGCTCCAGCATATCT
gi|17920 : TACT-C--CAT-TTA----GATTACTGTTGTGTTATTTGGGGACATTG----TA---ATGATTCATT---TGTAGATAAA-ATT-----GTTAGATTTCAAA----AGAGAGC-TTTAGATTTATTCTCGATA---AAAGTTACGATATTCC-----TTC-TACT-----GAATGT---TTCACAGAGATTAAATGGATTACGTTTCCTG-------AAAGA------------GTTAAATT-TCAAAA-ATTAGTACTTATATATAAATCATTTAAA-GACCAGGCTCCTGCATATCT
gi|17921 : CTGC-ACTA---AAGATGGGCT---T---GATTTA-ATA-----CAAAAATTATAGA----AAAGAGCAGCAAAAATTATCCTCAGTG---CA------GATCTTCT-----TTC-AGCCT-C-AGAGTCTTTATTTAAAGAACTTAACTGAAT---G---TCAGT------AAAGA-TAA------GGATTCAATA-TCTTAA-ATTATTAATTGTCTATAAAG-GCTTGAATTTC--AGTACCTGAATATTTGT
gi|17922 : actgttagt-ACTT---AAGATGGGCT---A---GACTGA-CTA-----CTAAAATTACAAA----AA----------GAATTATCCTCAATG---CA------GATCCTTT-----TTC-AGCCT-A-AGAGCCTTTATTTAAATAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCAAAA-TCAAAA-ATTATTACTTGTCTATAAAT-GCTTAAATTCCAAGGCACCTGAATATTTGT
gi|17923 : T---T---GATCTA-ATA-----CTAAAACTACAGA----AAAGAGCAGCAAGAATTATCATT-ATG---CA------GATTCTTT-----TCC-AGCAT-C-AGATCCTTTATTTAAATACCTTAACTGAAT---G---CCAGT------AAATA-TAA------GGATTCAGTA-TCATAA-ATTATTACTTGTGTATACGT-GCTTAAAAGCCCAGGCACCTGAATATTTGT
gi|17924 : TTTCAAA----AGAGAGCTGCTAGACTTATTCTCGATA---AAAATTACGATACTCC-----TTCTA-----C-AGAA---TTATTCACAGAGCTTAAATGGAT---G---AC-GT------TTCCT-TAA------AGAGTTAATA-TCAAAC-AGCAGTACTTATATATAAAT-CATGTGATGACCAGGCTCCTGAATATCT
Alignments
lowQualScore : 1 11 111 1111111 1111 11 11111 1111 11111 11111111 1111111 222222
lowQualScore : 6 8 1 8 3 1 4 55 000 0 66 6666666 7777 2 4 2 555 55 11 00000 8888 4 4 4 0 55 8888 4 00000 66 33 4 666 7777 44 88888888 11 1 6 9999 0 22 3333333 5 77777 1 5555 2 0 1 8888 777777 2 777777 2 4 0 2 66 3 0 444 5555 888888 1 3 888888 3 1 3 1 1 2 3
lowQualScore : . . . . . . . .. ... . .. ....... .... . . . ... .. .. ..... .... . . . . .. .... . ..... .. .. . ... .... .. ........ .. . . .... . .. ....... . ..... . .... . . . .... ...... . ...... . . . . .. . . ... .... ...... . . ...... . . . . . . .
lowQualScore : 7 0 0 0 2 4 3 77 000 3 99 2222222 5555 5 6 9 999 55 00 00000 5555 0 7 0 1 55 0000 0 00000 55 77 0 222 7777 66 88888888 00 0 2 1111 5 88 9999999 7 11111 0 7777 8 5 9 0000 777777 1 444444 7 4 5 7 22 8 1 777 5555 888888 5 1 888888 1 0 1 9 7 1 1
consensus : AATTCAGCAGAGATTACAAGCCGACTTAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAACTAAGTGTATGACAATAGGAACAAGACAAAA-ACTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTT-GCAAAATTCTCAATGTGAGAAACTTTTAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAATTATTTTACAGCGGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGNAACTGC-ACTA---AAGATGGGCT---T---GATCGA-ATA-----CTAAAATTNCAGA----AAAGAGCAGCAAGAATTATCCTCGATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCAATA-TCANAA-ACTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
Reference ( family-838 ) : AATTCAGCAGAGATTACAAGCCGACTTAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAACTAAGTGTATGACAATAGGAACAAGACAAAA-ACTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTT-GCAAAATTCTCAATGTGAGAAACTTTTAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAATTATTTTACAGCGGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGNAACTGC-ACTA---AAGATGGGCT---T---GATCGA-ATA-----CTAAAATTNCAGA----AAAGAGCAGCAAGAATTATCCTCGATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCAATA-TCANAA-ACTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17907 : AATTCAGCAGAGATTACAAGCCGACTTAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAACTAAGTGTATGACAATAGGAACAAGACAAAA-GCTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCCGGGATTTT-GCAAAATTCTCAATGTGAGAAACTTTTAGGTGTAAAAATTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAATTATTTTACAGCGGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGTAACTGC-ACTA---AAGATGGGCT---T---GATCGA-ATA-----TTAAAATTACAGA----AAAGAGCAGCAAGAATAATCCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGTACTTAACTGGAT---G---CCAGT------AAATA-TTA------GGATTCAGTA-TCATAA-ACTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17908 : AATTTAGCAGAGATTACAAGCCGACATAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAAATAAGTGTATGACAATAGAAACAAGACAAAA-ACTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTTTGCAAAATTCTCAATGTGAAATACTTTTAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACAGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGACAATTATTTTACAGCAGATAATTATATACTAC--CAT-TAATT--GATTACTGTTGCACTCTTTGGGGTAACTGC-ACTA---AAGATGGGCT---T---GATCGA-ATA-----CTAAAATTACAGA----AAAGAGCAGCAAGGATTATCCTCAATG---AA------GATCCTCT-----TTC-AGTCT-C-AAAGCCTTTATTTAAAGAACTTATCTGGAT---A---CCAGT------AAATA-TAA------GGATTCAATA-TCATAA-ATGAATACTTG--TATAATT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17909 : AATTCAGCAGAGATTAAAAGCTGACTTAACTTCTATAAATAAATGTTGTTCAAGAAATATGATGTATATTAATACAGAAAATACTAAGTGTATGACAATAGGAACAAGACAAAA-ACTATCAGTTCAAAAGGGCTGCCTTACTCTTACCATAAATGCAGGGATTTT-GCAAAATTTTCAATGTGAGAAATTTTTATGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-CGAAATTTATTTTACAGTGGATG----TAAACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTTGGGTAACTGC-ACTA---AAGATGGACT---T---GATCGA-ATA-----CTAAAATTACAGATCTTAAAGAGCAGTAAGAATTATTCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-AGAGCCTTTATTTAAAGTACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGACTCAATA-CCATAA-ACTGTTTCTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATACTTGT
gi|17910 : AGTTCAGAAGAGATTACAAGCTCACTTGACTTCTATAAATAAATGGTGTTCAAGAAAAATGATGTATATCAATACAGAAAAAAATAAGTGTGAGACAATAATAACAAGACAAAAAACTATCAGTTCAAAAGGACTGTCCTACTTTTGTCATAACTGCATGGATCTT-GTAAAATTCTCAATGTGAGAAACTTTAAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GACAAAT--AAACCAT-------ACA----TGCACTGTCATCTCATCACCCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAAGT--ATCT----A-CA-----TCTTAA
gi|17911 : AATTCAGCAGAGATTACAAGCTGACTTAACTTCTATAAAACAATAGTGTACAAGAAATATGATGTATATTAATACAGAAAAAACTAAAT
gi|17912 : ACGATGTATATTAATACTGAAAAAA-TAAGTGTATGACAATAGGAACAAGACAAAA-ATTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTT-G-AAAATTCTCAATGTGAGAAACTGTTAGGTATAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAA-T--AAACCAC-------ATA----TGTACTGTCATCTCATCACGCATATATACCT--TT-----TGT----GAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAAGTATTTTACAGCAGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGTAACTGC-ACTA---AAGATGGGCT---T---GATCGA-ATA-----CTAAAATTACAGA----AAAGAGCAGCAAGAATTATCCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-GAAGCCTTTATTTAAAGAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCGATA-TCATAA-ACTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17913 : GTGAAAAACTTCTGGGAGTAACAATTGACAACACA-CTAACATGGACTCAACAAGCTGAAA--ACACCCT-------AAAAAAATGCAAT-TC--CTTAT------TAT--ACTTACTT-----GGC----CAA-T--T-AAAATACT--ATTTGTCAA-TA-----CCT----ACT-AGGAAATTATTTTACAATTCTTA----CATACTTCTTCATCTAA-----ACTATTGCTGTACAATATGGGGAAATTGCAACT-------CTGACCTATCT---GA-CAACATA-----TTAAAATTTCAAA----AACGTGCTGCAAGACTTATCCTTGATG---AA------GACATTGA-----TGC-ACCAT-CTGAAACATTT-TTTAATGATCTAAAATGGAT---G---
gi|17914 : GTGAAAAACTTCTGGGAGTAACAATTGACAACACA-CTAACATGGACTCAA-----CAAGTTGAAAACACTCTAAAAAAA----TGCAAT-TC--CTTAT------TAT--ACTTACTT-----GGC----CGA-A--T-AAAATACT--ATTT----ATCAATACCTATT-------AGGAAATTATTTTACAATTCTTA----CATACTTC--C-T-CATCTA-GATTATTGCTGTACAATATGGGGAAATTGCAACT-------CTGACCTATCT---GA-CAACGTA-----TTAAAATTTCAAA----AACGTGCTGCAAGACTTATCCTTGATA---AA------GACATTGA-----TAC-ACCAT-C-TGAAACATTATTTAATGATCTAAAATGGAT---G---
gi|17915 : AT--AAACTAT-------ATAAA--T-CACTG-------ATTA---ATAA--AGTT--TTCTTGCTGT----CTA-ACATCAAGAAA-T--GTCTT---C-CA-----T-TAGAAACA-AGAATACTATATTATAAC----A----TATACAAT--CAG-TCTTG--GATTATGGATACACTATTTGGGGAGACTGC-TCTGGTTACAATA---T---C---AGTAGA-ATT-----GGAAAAATCCAAA----AGAGAGCAGCTAGAATCAGACTCGATATGCCATAT---GATTCTC--------C-A---T-C-TAAACCATTGTTTCAGGAGCTTAAATGG-T-----------T------AAATA-TTATATTGCAAATCAAATCTTCAAAA-AGCAATACAAGTTTATAAAT-GCTTA
gi|17916 : ATTTCATCATATATCT--GGCT--AT-----TAT----CAA-AGGT-AAAAGATT--ATCTTT--C-CA-----TC---AACCATAGAACGTTATATTATAAAGCATA----CATACAAT--CAC---ATTTCAATTATTGTTGTACAGTTTGGGGAAA
gi|17917 : TAT--ACCT--TT-----TATATTGCATTAAAT-A-----CTTCATTG----A-CA-----TCCCTA--CA-CGCAAACTCTTTTTTAATGCATA----TATACTAA--CAC---ATTTAGATTATTGTTGTACCATTTGGGGCAACTGC-AATT---CAGA---ACT---T-----TTGA-ACAATCTCCTAAAATTCCAAA----AACGTGCAGCGAGAATAATACTCAACA----A------GA--CTATGATTATCC-ATCTG-C-AGAA---TTATTTGATCAACTTGGCTGGAT---G---ACATT------CCAGG-AAA------GAATCCAATA-TAAAAAGGCTACT-CTTGTTTTCAAAT-CTCTAAACAATCTGGCACC
gi|17918 : -AGAAAATTATTTTACAGTGGATA----TTTACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTTGGGTAACTGC-ACTA---AAAATGGGCT---T---GATCGA-ATA-----CTAAAATTACAGA----AAAGAGCAGCAAGAATTATCCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGAATTTAACTGGAT---G---CCAGT------AAATA-TAA------GGATTCAGTA-TCATAA-ACTATTACTTGTCTATAAAT-TCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17919 : TA----CATTTTAC--CAC---ATTTAGATTGCTGTTGTGTAATTTGGGGAAAATG----TA---ATGTTTCACT---TGTAGATTAA-ATT-----GTTAGGTTTCAAA----AGAGAGCTGCTAGACTTATTCTCGATA---AAAATTACGATACTCC-----TT-----CTAC-AGAA---TTATTCACAGAGATTAAATGGAT---G----AAGTTTCTTGAAAGAGTAA------------AATT-TCAAAA-AGCAGTACTTATATATAAAT-CATTTAATTATCAGGCTCCAGCATATCT
gi|17920 : TACT-C--CAT-TTA----GATTACTGTTGTGTTATTTGGGGACATTG----TA---ATGATTCATT---TGTAGATAAA-ATT-----GTTAGATTTCAAA----AGAGAGC-TTTAGATTTATTCTCGATA---AAAGTTACGATATTCC-----TTC-TACT-----GAATGT---TTCACAGAGATTAAATGGATTACGTTTCCTG-------AAAGA------------GTTAAATT-TCAAAA-ATTAGTACTTATATATAAATCATTTAAA-GACCAGGCTCCTGCATATCT
gi|17921 : CTGC-ACTA---AAGATGGGCT---T---GATTTA-ATA-----CAAAAATTATAGA----AAAGAGCAGCAAAAATTATCCTCAGTG---CA------GATCTTCT-----TTC-AGCCT-C-AGAGTCTTTATTTAAAGAACTTAACTGAAT---G---TCAGT------AAAGA-TAA------GGATTCAATA-TCTTAA-ATTATTAATTGTCTATAAAG-GCTTGAATTTC--AGTACCTGAATATTTGT
gi|17922 : actgttagt-ACTT---AAGATGGGCT---A---GACTGA-CTA-----CTAAAATTACAAA----AA----------GAATTATCCTCAATG---CA------GATCCTTT-----TTC-AGCCT-A-AGAGCCTTTATTTAAATAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCAAAA-TCAAAA-ATTATTACTTGTCTATAAAT-GCTTAAATTCCAAGGCACCTGAATATTTGT
gi|17923 : T---T---GATCTA-ATA-----CTAAAACTACAGA----AAAGAGCAGCAAGAATTATCATT-ATG---CA------GATTCTTT-----TCC-AGCAT-C-AGATCCTTTATTTAAATACCTTAACTGAAT---G---CCAGT------AAATA-TAA------GGATTCAGTA-TCATAA-ATTATTACTTGTGTATACGT-GCTTAAAAGCCCAGGCACCTGAATATTTGT
gi|17924 : TTTCAAA----AGAGAGCTGCTAGACTTATTCTCGATA---AAAATTACGATACTCC-----TTCTA-----C-AGAA---TTATTCACAGAGCTTAAATGGAT---G---AC-GT------TTCCT-TAA------AGAGTTAATA-TCAAAC-AGCAGTACTTATATATAAAT-CATGTGATGACCAGGCTCCTGAATATCT
blockSeqs : A A A T C C G AC CAA TG TCTAAAA AAAA G A C CGC AT AC CTTGC ATTG T A C TC GTCA T ATACC TG AG T CAG ATTA TT CATCTA TC T A GGTT GG ATCT C ATCTC A TCTT A A TGCC AATTAC C TGATTA T G A TG C TAC TTTC TTCTTG T G TATTGC T T G T A C C
blockSeqs : C . C . C C G AC . . . AA G A C CGC . AC . . . A . . TT . . TG AG . TGG . . TAATT TG T A A GA ATCT C . A . A A A AGTTAC C T . G . A C . C . G . . . T . C T C .
blockSeqs : A . T . T . G . . . . . G A C CCC . . . . . A . . T . . TA AG . CAG . . TAATT TG T . A GG TGTA . . A . A A C AATTAC C T . G . A C . C . G . . . T . C T T .
blockSeqs : C . A . . . G . . . . . G A C CGC . . . . . A . . . . . TG AA . TTC . . TAATT AA A . A AC TGTA . . T . T G C TAT A T . C . G C . C . T . . . A . G A T .
blockSeqs : . . . . . . . . G A T TAT . . . . . C . . . . . AG AC . TTC . . TCTTG AA A . T AC T . . T . T G A . A A . C . T A . A . G . . . A . C C C .
blockSeqs : . . . . . . . . . C . . . . . . G . . . . . CT A . AGC . . ATTTC TA A . A GG T . . C . A G A . T A . T . T C . C . T . . . T . C T A .
blockSeqs : . . . . . . . . . . . . A . . . . . T . . TGC . . ATTTA AG A . A CA T . . C . A A C . C T . G . A C . T . G . . . A . G G A .
blockSeqs : . . . . . . . . . . . . . . . . . TGG . . TAATT CA C . A CA C . . A . A A A . A C . A . G T . C . G . . . A . T G C .
blockSeqs : . . . . . . . . . . . . . C . . ATTTA TG T . A GG T . . T . T G A . A C . G . A T . C . G . . . T . T T C .
blockSeqs : . . CTAA AA A . T GG T . . T . A G C . C T . G . A C . A . G . . . A . T T G .
blockSeqs : . TTA TA A . . A T . . A . A A C . C T . G . A C . . . T . . . T . T T A .
blockSeqs : . . . A . . A . T A C . T T . . . A . . . . C . . . A . G G . .
blockSeqs : T . . A . . G A . A C . . . A . .
blockSeqs : T . . . . . . . . . . . . .
blockSeqCons :
originalCons : AATTCAGCAGAGATTACAAGCCGACTTAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAACTAAGTGTATGACAATAGGAACAAGACAAAA-ACTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTT-GCAAAATTCTCAATGTGAGAAACTTTTAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAATTATTTTACAGCGGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGNAACTGC-ACTA---AAGATGGGCT---T---GATCGA-ATA-----CTAAAATTNCAGA----AAAGAGCAGCAAGAATTATCCTCGATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCAATA-TCANAA-ACTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
finalCons : AATTCAGCAGAGATTACAAGCCGACTTAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAACTAAGTGTATGACAATAGGAACAAGACAAAA-ACTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTT-GCAAAATTCTCAATGTGAGAAACTTTTAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAATTATTTTACAGCGGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGNAACTGC-ACTA---AAGATGGGCT---T---GATCGA-ATA-----CTAAAATTNCAGA----AAAGAGCAGCAAGAATTATCCTCGATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCAATA-TCANAA-ACTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
Alignments
lowQualScore : 1 11 111 1111111 1111 11 11111 1111 11111 11111111 1111111 222222
lowQualScore : 6 8 1 8 3 1 4 55 000 0 66 6666666 7777 2 4 2 555 55 11 00000 8888 4 4 4 0 55 8888 4 00000 66 33 4 666 7777 44 88888888 11 1 6 9999 0 22 3333333 5 77777 1 5555 2 0 1 8888 777777 2 777777 2 4 0 2 66 3 0 444 5555 888888 1 3 888888 3 1 3 1 1 2 3
lowQualScore : . . . . . . . .. ... . .. ....... .... . . . ... .. .. ..... .... . . . . .. .... . ..... .. .. . ... .... .. ........ .. . . .... . .. ....... . ..... . .... . . . .... ...... . ...... . . . . .. . . ... .... ...... . . ...... . . . . . . .
lowQualScore : 7 0 0 0 2 4 3 77 000 3 99 2222222 5555 5 6 9 999 55 00 00000 5555 0 7 0 1 55 0000 0 00000 55 77 0 222 7777 66 88888888 00 0 2 1111 5 88 9999999 7 11111 0 7777 8 5 9 0000 777777 1 444444 7 4 5 7 22 8 1 777 5555 888888 5 1 888888 1 0 1 9 7 1 1
consensus : AATTCAGCAGAGATTACAAGCCGACTTAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAACTAAGTGTATGACAATAGGAACAAGACAAAA-ACTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTT-GCAAAATTCTCAATGTGAGAAACTTTTAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAATTATTTTACAGCGGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGNAACTGC-ACTA---AAGATGGGCT---T---GATCGA-ATA-----CTAAAATTNCAGA----AAAGAGCAGCAAGAATTATCCTCGATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCAATA-TCANAA-ACTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
Reference ( family-838 ) : AATTCAGCAGAGATTACAAGCCGACTTAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAACTAAGTGTATGACAATAGGAACAAGACAAAA-ACTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTT-GCAAAATTCTCAATGTGAGAAACTTTTAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAATTATTTTACAGCGGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGNAACTGC-ACTA---AAGATGGGCT---T---GATCGA-ATA-----CTAAAATTNCAGA----AAAGAGCAGCAAGAATTATCCTCGATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCAATA-TCANAA-ACTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17907 : AATTCAGCAGAGATTACAAGCCGACTTAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAACTAAGTGTATGACAATAGGAACAAGACAAAA-GCTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCCGGGATTTT-GCAAAATTCTCAATGTGAGAAACTTTTAGGTGTAAAAATTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAATTATTTTACAGCGGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGTAACTGC-ACTA---AAGATGGGCT---T---GATCGA-ATA-----TTAAAATTACAGA----AAAGAGCAGCAAGAATAATCCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGTACTTAACTGGAT---G---CCAGT------AAATA-TTA------GGATTCAGTA-TCATAA-ACTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17908 : AATTTAGCAGAGATTACAAGCCGACATAACTTCTATAAATAAATGGTGTTCAAGAAATATGATGTATATTAATACAGAAAAAAATAAGTGTATGACAATAGAAACAAGACAAAA-ACTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTTTGCAAAATTCTCAATGTGAAATACTTTTAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACAGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGACAATTATTTTACAGCAGATAATTATATACTAC--CAT-TAATT--GATTACTGTTGCACTCTTTGGGGTAACTGC-ACTA---AAGATGGGCT---T---GATCGA-ATA-----CTAAAATTACAGA----AAAGAGCAGCAAGGATTATCCTCAATG---AA------GATCCTCT-----TTC-AGTCT-C-AAAGCCTTTATTTAAAGAACTTATCTGGAT---A---CCAGT------AAATA-TAA------GGATTCAATA-TCATAA-ATGAATACTTG--TATAATT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17909 : AATTCAGCAGAGATTAAAAGCTGACTTAACTTCTATAAATAAATGTTGTTCAAGAAATATGATGTATATTAATACAGAAAATACTAAGTGTATGACAATAGGAACAAGACAAAA-ACTATCAGTTCAAAAGGGCTGCCTTACTCTTACCATAAATGCAGGGATTTT-GCAAAATTTTCAATGTGAGAAATTTTTATGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAAAT--AAACCAT-------ATA----TGCACTGTCATCTCATCACGCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-CGAAATTTATTTTACAGTGGATG----TAAACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTTGGGTAACTGC-ACTA---AAGATGGACT---T---GATCGA-ATA-----CTAAAATTACAGATCTTAAAGAGCAGTAAGAATTATTCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-AGAGCCTTTATTTAAAGTACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGACTCAATA-CCATAA-ACTGTTTCTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATACTTGT
gi|17910 : AGTTCAGAAGAGATTACAAGCTCACTTGACTTCTATAAATAAATGGTGTTCAAGAAAAATGATGTATATCAATACAGAAAAAAATAAGTGTGAGACAATAATAACAAGACAAAAAACTATCAGTTCAAAAGGACTGTCCTACTTTTGTCATAACTGCATGGATCTT-GTAAAATTCTCAATGTGAGAAACTTTAAGGTGTAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GACAAAT--AAACCAT-------ACA----TGCACTGTCATCTCATCACCCATAT--ACCT--TT-----TGT----CAA-AAAT-AAGAAAGT--ATCT----A-CA-----TCTTAA
gi|17911 : AATTCAGCAGAGATTACAAGCTGACTTAACTTCTATAAAACAATAGTGTACAAGAAATATGATGTATATTAATACAGAAAAAACTAAAT
gi|17912 : ACGATGTATATTAATACTGAAAAAA-TAAGTGTATGACAATAGGAACAAGACAAAA-ATTATCAGTTCAAAAGGACTGCCTTACTATTACCATAAATGCAGGGATTTT-G-AAAATTCTCAATGTGAGAAACTGTTAGGTATAAAAGTTGA-ACCTCAGTTAAATTGG--TCAA---GTCAA-T--AAACCAC-------ATA----TGTACTGTCATCTCATCACGCATATATACCT--TT-----TGT----GAA-AAAT-AAGAAACT--ATCT----A-CA-----TCTTGAAGCA-AGAAAAGTATTTTACAGCAGATA----TATACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTGGGGTAACTGC-ACTA---AAGATGGGCT---T---GATCGA-ATA-----CTAAAATTACAGA----AAAGAGCAGCAAGAATTATCCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-GAAGCCTTTATTTAAAGAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCGATA-TCATAA-ACTATTACTTGTCTATAAAT-GCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17913 : GTGAAAAACTTCTGGGAGTAACAATTGACAACACA-CTAACATGGACTCAACAAGCTGAAA--ACACCCT-------AAAAAAATGCAAT-TC--CTTAT------TAT--ACTTACTT-----GGC----CAA-T--T-AAAATACT--ATTTGTCAA-TA-----CCT----ACT-AGGAAATTATTTTACAATTCTTA----CATACTTCTTCATCTAA-----ACTATTGCTGTACAATATGGGGAAATTGCAACT-------CTGACCTATCT---GA-CAACATA-----TTAAAATTTCAAA----AACGTGCTGCAAGACTTATCCTTGATG---AA------GACATTGA-----TGC-ACCAT-CTGAAACATTT-TTTAATGATCTAAAATGGAT---G---
gi|17914 : GTGAAAAACTTCTGGGAGTAACAATTGACAACACA-CTAACATGGACTCAA-----CAAGTTGAAAACACTCTAAAAAAA----TGCAAT-TC--CTTAT------TAT--ACTTACTT-----GGC----CGA-A--T-AAAATACT--ATTT----ATCAATACCTATT-------AGGAAATTATTTTACAATTCTTA----CATACTTC--C-T-CATCTA-GATTATTGCTGTACAATATGGGGAAATTGCAACT-------CTGACCTATCT---GA-CAACGTA-----TTAAAATTTCAAA----AACGTGCTGCAAGACTTATCCTTGATA---AA------GACATTGA-----TAC-ACCAT-C-TGAAACATTATTTAATGATCTAAAATGGAT---G---
gi|17915 : AT--AAACTAT-------ATAAA--T-CACTG-------ATTA---ATAA--AGTT--TTCTTGCTGT----CTA-ACATCAAGAAA-T--GTCTT---C-CA-----T-TAGAAACA-AGAATACTATATTATAAC----A----TATACAAT--CAG-TCTTG--GATTATGGATACACTATTTGGGGAGACTGC-TCTGGTTACAATA---T---C---AGTAGA-ATT-----GGAAAAATCCAAA----AGAGAGCAGCTAGAATCAGACTCGATATGCCATAT---GATTCTC--------C-A---T-C-TAAACCATTGTTTCAGGAGCTTAAATGG-T-----------T------AAATA-TTATATTGCAAATCAAATCTTCAAAA-AGCAATACAAGTTTATAAAT-GCTTA
gi|17916 : ATTTCATCATATATCT--GGCT--AT-----TAT----CAA-AGGT-AAAAGATT--ATCTTT--C-CA-----TC---AACCATAGAACGTTATATTATAAAGCATA----CATACAAT--CAC---ATTTCAATTATTGTTGTACAGTTTGGGGAAA
gi|17917 : TAT--ACCT--TT-----TATATTGCATTAAAT-A-----CTTCATTG----A-CA-----TCCCTA--CA-CGCAAACTCTTTTTTAATGCATA----TATACTAA--CAC---ATTTAGATTATTGTTGTACCATTTGGGGCAACTGC-AATT---CAGA---ACT---T-----TTGA-ACAATCTCCTAAAATTCCAAA----AACGTGCAGCGAGAATAATACTCAACA----A------GA--CTATGATTATCC-ATCTG-C-AGAA---TTATTTGATCAACTTGGCTGGAT---G---ACATT------CCAGG-AAA------GAATCCAATA-TAAAAAGGCTACT-CTTGTTTTCAAAT-CTCTAAACAATCTGGCACC
gi|17918 : -AGAAAATTATTTTACAGTGGATA----TTTACTAC--CAT-TAATT--GATTACTGTTGCACTGTTTTGGGTAACTGC-ACTA---AAAATGGGCT---T---GATCGA-ATA-----CTAAAATTACAGA----AAAGAGCAGCAAGAATTATCCTCAATG---CA------GATCCTCT-----TTC-AGCCT-C-GGAGCCTTTATTTAAAGAATTTAACTGGAT---G---CCAGT------AAATA-TAA------GGATTCAGTA-TCATAA-ACTATTACTTGTCTATAAAT-TCTTAAATTCCCAGGCACCTGAATATTTGT
gi|17919 : TA----CATTTTAC--CAC---ATTTAGATTGCTGTTGTGTAATTTGGGGAAAATG----TA---ATGTTTCACT---TGTAGATTAA-ATT-----GTTAGGTTTCAAA----AGAGAGCTGCTAGACTTATTCTCGATA---AAAATTACGATACTCC-----TT-----CTAC-AGAA---TTATTCACAGAGATTAAATGGAT---G----AAGTTTCTTGAAAGAGTAA------------AATT-TCAAAA-AGCAGTACTTATATATAAAT-CATTTAATTATCAGGCTCCAGCATATCT
gi|17920 : TACT-C--CAT-TTA----GATTACTGTTGTGTTATTTGGGGACATTG----TA---ATGATTCATT---TGTAGATAAA-ATT-----GTTAGATTTCAAA----AGAGAGC-TTTAGATTTATTCTCGATA---AAAGTTACGATATTCC-----TTC-TACT-----GAATGT---TTCACAGAGATTAAATGGATTACGTTTCCTG-------AAAGA------------GTTAAATT-TCAAAA-ATTAGTACTTATATATAAATCATTTAAA-GACCAGGCTCCTGCATATCT
gi|17921 : CTGC-ACTA---AAGATGGGCT---T---GATTTA-ATA-----CAAAAATTATAGA----AAAGAGCAGCAAAAATTATCCTCAGTG---CA------GATCTTCT-----TTC-AGCCT-C-AGAGTCTTTATTTAAAGAACTTAACTGAAT---G---TCAGT------AAAGA-TAA------GGATTCAATA-TCTTAA-ATTATTAATTGTCTATAAAG-GCTTGAATTTC--AGTACCTGAATATTTGT
gi|17922 : actgttagt-ACTT---AAGATGGGCT---A---GACTGA-CTA-----CTAAAATTACAAA----AA----------GAATTATCCTCAATG---CA------GATCCTTT-----TTC-AGCCT-A-AGAGCCTTTATTTAAATAACTTAACTGGAT---G---CCAGT------AAAGA-TAA------GGATTCAAAA-TCAAAA-ATTATTACTTGTCTATAAAT-GCTTAAATTCCAAGGCACCTGAATATTTGT
gi|17923 : T---T---GATCTA-ATA-----CTAAAACTACAGA----AAAGAGCAGCAAGAATTATCATT-ATG---CA------GATTCTTT-----TCC-AGCAT-C-AGATCCTTTATTTAAATACCTTAACTGAAT---G---CCAGT------AAATA-TAA------GGATTCAGTA-TCATAA-ATTATTACTTGTGTATACGT-GCTTAAAAGCCCAGGCACCTGAATATTTGT
gi|17924 : TTTCAAA----AGAGAGCTGCTAGACTTATTCTCGATA---AAAATTACGATACTCC-----TTCTA-----C-AGAA---TTATTCACAGAGCTTAAATGGAT---G---AC-GT------TTCCT-TAA------AGAGTTAATA-TCAAAC-AGCAGTACTTATATATAAAT-CATGTGATGACCAGGCTCCTGAATATCT