lowQualScore : 1 1 1 3333333333 2 1111 1
lowQualScore : 3 5 5 6666666666 3 3 5555 55 5 5555
lowQualScore : . . . .......... . . .... .. . ....
lowQualScore : 7 3 0 2222222222 1 1 7777 88 3 0000
consensus : GTTCACCCATTATCAACTTCTAATTTATTTTCA-CATGCACACTT-TTTCCCCCATGC---CATTAACCCTTGCCCGGGG----CTGTTATCAAAATTAGGATTCTGGGTAGTGATAA
Reference ( gi|44663 ) : GTTCCCCAATTATAAACTTCTAATTTATTTTCA-CATGCACACTTCTTTCCCCCATGG---CATTAACTTTTGCCCGGTG----CTGTTATCAAAATTAGGATTCTGGGTAGTGATAA
gi|44660 : GTTCTCCCATTATCAACTTC-----------CA-CATGTACACTT-TTTCCCCCATGC---CATTAACCCTTGCCCGGCG----CTGTTATCAAATTTAGGATTCTGGGTAGTGATAA
gi|44659 : GTTCACCCATTATCAACTTC-----------CA-CATGTACACTT-TTTCCCCCATGC---CATTAACCCTTGCCCGGCG----CTGTTATCAAAATTAGGATTCTGGGTAGTG
gi|44664 : GTTCATCCATTATCAACTTCTAATTT--TTTCT-CATGCACACTT-TTTCCCCCAT-----TTTTAACCATTGCCCGGGG----CTGTTATCAAAATAAGGATTCTGGGTAGTGATAA
gi|44661 : GTTCACCCATTATCAACTTC-----------CA-CATGCACACTT-TTCCCCCCATGC---CATTAATCCTTGCCTGGCG----CTGTTATCAAAATTAGGATTCTAGGTAGTGATAA
gi|44665 : GTTCACTTATTATCAACTTCTAATTTATTTTCA-CAAGCACACTT-TTTCCCCCATGC---CATAAATCCTTATCCGGGA----CAATTATCAAAATTAAGATACTTGGTAGTGATAA
gi|44662 : GTTCACCCATTATCAACTTC-----------CA-CATGCACACTT-TTTACCCCATGC---CATTAACCCTTGCCCGCGA----CTGTTATCAAAATTTGGATTCGGGGTAGTGATAA
gi|44667 : TTCGCCCATTTTCAACTTCTAATCTATTTTCA-CATGCACCCTTTTT--CTCCATAC---CATTAACCCTTGCCCGG-G----CTATTATCAAAATTAGGATTTTGGGTAGTGATAA
gi|44668 : ATTATCAAGTTCTAATTTATTATCA-CATGCATACTTCTTTCCCCCATGG---CATTAACTCTTGCCCGGGG----CTGTTATCAAAATTAGGATTCTGGGTAGTGATAA
gi|44666 : cTCATCTTCAACATGCGCACTT--TTCCCCCGTGC---CATTTACCGTTGCCCGGGG----CTGTTATCAAAATTAGGATTTTGGGTAGTTATAA
gi|44669 : ttcacccgttaTTATTTTCA-CGAGCGTACTTTCTTTCCACATGC---CATTGGCCTTTGGCCGGGT----TTGTTATCAAAATAAGGATTCTGGGTAGTGAAAA
gi|44670 : aATTTTCA-CATGAACATTTTCTTTTCTGAAGC---CATTGACCTTTGACATAGG----CCGTTATTAAAGTTAAGATTCTAGGAAGTGATAA
gi|44671 : attaataTTTCA-CGAGCACACTTTCCTTTCCAATGT---CATTGACCTTTAACCGGAT----CTCTTATCAAAATTA-------GGGTAGAGATAA
gi|44672 : -CGTGCACAC--CTTTCCA--ATGT---CAATGACCTTTG---GATGGAATCT-TTATCAAAATAAGGATTATGGGTAGTGATAA
gi|44673 : GCACACTT-TTTCCCCT-TGT---CATTTACCCTTGCTCGG-G----CTGTTATCAAAATTAGGATTCTGGATAGTGA
gi|44675 : TTTTCCCCATCA---AATTAACTTTTGCCCGGAG----TTGTTATCAAAATACGGATTCAGGGTAGTGAAAA
gi|44674 : TTTCTCTCACCGAACCACTGACCTTTGAACGGAG----CTA--AATAAAATTAGGATTCTGGATAGTGGTAA
gi|44676 : cagTGCCCGGGG----CTGTTATCAAAATAAGGATTTTGGGTAGTTATAA
Alignments
lowQualScore : 44444444444
lowQualScore : 00000000000 4 4 2 2 333 33
lowQualScore : ........... . . . . ... ..
lowQualScore : 66666666666 7 7 4 2 999 11
consensus : GTTCACCCATTATCAACTTCTAATTTATTTTCACATGCACACTT-T-T-TCCC-CCATGCC---ATTAACCCT--TGCCCGGGGCTGTTATCAAAATTAGGATTCTGGGTAGTGATAA
Reference ( family-836 ) : GTTCACCCATTATCAACTTCTAATTTATTTTCACATGCACACTT-T-T-TCCC-CCATGCC---ATTAACCCT--TGCCCGGGGCTGTTATCAAAATTAGGATTCTGGGTAGTGATAA
gi|44659 : GTTCACCCATTATCAACTTC-----------CACATGTACACTT-T-T-TCCC-CCATGCC---ATTAACCCT--TGCCCGGCGCTGTTATCAAAATTAGGATTCTGGGTAGTG
gi|44660 : GTTCTCCCATTATCAACTTC-----------CACATGTACACTT-T-T-TCCC-CCATGCC---ATTAACCCT--TGCCCGGCGCTGTTATCAAATTTAGGATTCTGGGTAGTGATAA
gi|44661 : GTTCACCCATTATCAACTTC-----------CACATGCACACTT-T-T-CCCC-CCATGCC---ATTAATCCT--TGCCTGGCGCTGTTATCAAAATTAGGATTCTAGGTAGTGATAA
gi|44662 : GTTCACCCATTATCAACTTC-----------CACATGCACACTT-T-T-TACC-CCATGCC---ATTAACCCT--TGCCCGCGACTGTTATCAAAATTTGGATTCGGGGTAGTGATAA
gi|44663 : GTTCCCCAATTATAAACTTCTAATTTATTTTCACATGCACACTTCT-T-TCCC-CCATGGC---ATTAACTTT--TGCCCGGTGCTGTTATCAAAATTAGGATTCTGGGTAGTGATAA
gi|44664 : GTTCATCCATTATCAACTTCTAATTT--TTTCTCATGCACACTT-T-T-TCCC-CCATTT-----TTAACCAT--TGCCCGGGGCTGTTATCAAAATAAGGATTCTGGGTAGTGATAA
gi|44665 : GTTCACTTATTATCAACTTCTAATTTATTTTCACAAGCACACTT-T-T-TCCC-CCATGCC---ATAAATCCT--TATCCGGGACAATTATCAAAATTAAGATACTTGGTAGTGATAA
gi|44666 : TTCACCCGTTATCATCTTC-A----------ACATGCGCAC-T-T-T-TCCC-CCGTGCC---ATTTACCGT--TGCCCGGGGCTGTTATCAAAATTAGGATTTTGGGTAGTTATAA
gi|44667 : TTCGCCCATTTTCAACTTCTAATCTATTTTCACATGCACCCTT-T-T-T-CT-CCATACC---ATTAACCCT--TGCCC-GGGCTATTATCAAAATTAGGATTTTGGGTAGTGATAA
gi|44668 : CATTATCAAGTTCTAATTTATTATCACATGCATACTTCT-T-TCCC-CCATGGC---ATTAACTCT--TGCCCGGGGCTGTTATCAAAATTAGGATTCTGGGTAGTGATAA
gi|44669 : TTATTTTCACGAGCGTACTT-TCT-TTCC-ACATGCC---ATTGGCCTT--TGGCCGGGTTTGTTATCAAAATAAGGATTCTGGGTAGTGAAAA
gi|44670 : aATTTTCACATGAACATTT-TCT-TTTC-TGAAGCC---ATTGACCTT--TGACATAGGCCGTTATTAAAGTTAAGATTCTAGGAAGTGATAA
gi|44671 : attaataTTTCACGAGCACACTT-T-CCTTTC-CAATGTC---ATTGACCTT--TAACCGGATCTCTTATCAAAATTA-------GGGTAGAGATAA
gi|44672 : CGTGCACACCT-T-T----C-CAATGTC---AATGACCTT--TGGATGGAATCTTTATCAAAATAAGGATTATGGGTAGTGATAA
gi|44673 : GCACACTT-T-T-TCCC-CT-TGTC---ATTTACCCT--TGCTCGGG-CTGTTATCAAAATTAGGATTCTGGATAGTGA
gi|44674 : CAGTT-T-C-TCTCACCGAACC---ACTGACCTT--TGAACGGAGCTA--AATAAAATTAGGATTCTGGATAGTGGTAA
gi|44675 : -T-T-TTCC-CCATCAA---ATTAACTTT--TGCCCGGAGTTGTTATCAAAATACGGATTCAGGGTAGTGAAAA
gi|44676 : -CCCTGCCTAAATGAATTCTGATGCCCGGGGCTGTTATCAAAATAAGGATTTTGGGTAGTTATAA
Alignments
lowQualScore : 44444444444
lowQualScore : 00000000000 4 4 2 2 333 33
lowQualScore : ........... . . . . ... ..
lowQualScore : 66666666666 7 7 4 2 999 11
consensus : GTTCACCCATTATCAACTTCTAATTTATTTTCACATGCACACTT-T-T-TCCC-CCATGCC---ATTAACCCT--TGCCCGGGGCTGTTATCAAAATTAGGATTCTGGGTAGTGATAA
Reference ( family-836 ) : GTTCACCCATTATCAACTTCTAATTTATTTTCACATGCACACTT-T-T-TCCC-CCATGCC---ATTAACCCT--TGCCCGGGGCTGTTATCAAAATTAGGATTCTGGGTAGTGATAA
gi|44659 : GTTCACCCATTATCAACTTC-----------CACATGTACACTT-T-T-TCCC-CCATGCC---ATTAACCCT--TGCCCGGCGCTGTTATCAAAATTAGGATTCTGGGTAGTG
gi|44660 : GTTCTCCCATTATCAACTTC-----------CACATGTACACTT-T-T-TCCC-CCATGCC---ATTAACCCT--TGCCCGGCGCTGTTATCAAATTTAGGATTCTGGGTAGTGATAA
gi|44661 : GTTCACCCATTATCAACTTC-----------CACATGCACACTT-T-T-CCCC-CCATGCC---ATTAATCCT--TGCCTGGCGCTGTTATCAAAATTAGGATTCTAGGTAGTGATAA
gi|44662 : GTTCACCCATTATCAACTTC-----------CACATGCACACTT-T-T-TACC-CCATGCC---ATTAACCCT--TGCCCGCGACTGTTATCAAAATTTGGATTCGGGGTAGTGATAA
gi|44663 : GTTCCCCAATTATAAACTTCTAATTTATTTTCACATGCACACTTCT-T-TCCC-CCATGGC---ATTAACTTT--TGCCCGGTGCTGTTATCAAAATTAGGATTCTGGGTAGTGATAA
gi|44664 : GTTCATCCATTATCAACTTCTAATTT--TTTCTCATGCACACTT-T-T-TCCC-CCATTT-----TTAACCAT--TGCCCGGGGCTGTTATCAAAATAAGGATTCTGGGTAGTGATAA
gi|44665 : GTTCACTTATTATCAACTTCTAATTTATTTTCACAAGCACACTT-T-T-TCCC-CCATGCC---ATAAATCCT--TATCCGGGACAATTATCAAAATTAAGATACTTGGTAGTGATAA
gi|44666 : TTCACCCGTTATCATCTTC-A----------ACATGCGCAC-T-T-T-TCCC-CCGTGCC---ATTTACCGT--TGCCCGGGGCTGTTATCAAAATTAGGATTTTGGGTAGTTATAA
gi|44667 : TTCGCCCATTTTCAACTTCTAATCTATTTTCACATGCACCCTT-T-T-T-CT-CCATACC---ATTAACCCT--TGCCC-GGGCTATTATCAAAATTAGGATTTTGGGTAGTGATAA
gi|44668 : CATTATCAAGTTCTAATTTATTATCACATGCATACTTCT-T-TCCC-CCATGGC---ATTAACTCT--TGCCCGGGGCTGTTATCAAAATTAGGATTCTGGGTAGTGATAA
gi|44669 : TTATTTTCACGAGCGTACTT-TCT-TTCC-ACATGCC---ATTGGCCTT--TGGCCGGGTTTGTTATCAAAATAAGGATTCTGGGTAGTGAAAA
gi|44670 : aATTTTCACATGAACATTT-TCT-TTTC-TGAAGCC---ATTGACCTT--TGACATAGGCCGTTATTAAAGTTAAGATTCTAGGAAGTGATAA
gi|44671 : attaataTTTCACGAGCACACTT-T-CCTTTC-CAATGTC---ATTGACCTT--TAACCGGATCTCTTATCAAAATTA-------GGGTAGAGATAA
gi|44672 : CGTGCACACCT-T-T----C-CAATGTC---AATGACCTT--TGGATGGAATCTTTATCAAAATAAGGATTATGGGTAGTGATAA
gi|44673 : GCACACTT-T-T-TCCC-CT-TGTC---ATTTACCCT--TGCTCGGG-CTGTTATCAAAATTAGGATTCTGGATAGTGA
gi|44674 : CAGTT-T-C-TCTCACCGAACC---ACTGACCTT--TGAACGGAGCTA--AATAAAATTAGGATTCTGGATAGTGGTAA
gi|44675 : -T-T-TTCC-CCATCAA---ATTAACTTT--TGCCCGGAGTTGTTATCAAAATACGGATTCAGGGTAGTGAAAA
gi|44676 : -CCCTGCCTAAATGAATTCTGATGCCCGGGGCTGTTATCAAAATAAGGATTTTGGGTAGTTATAA
blockSeqs : TAATTTATTTT C C C A TAA GA
blockSeqs : TAATTTATTTT C C . . . .
blockSeqs : TAATCTATTTT . . . . . .
blockSeqs : TAATTTATTAT . . . . . .
blockSeqs : TAATTTTTT . . . . . .
blockSeqs : A . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . .
blockSeqCons : TAATTTATTT*
originalCons : GTTCACCCATTATCAACTTCTAATTTATTTTCACATGCACACTT-T-T-TCCC-CCATGCC---ATTAACCCT--TGCCCGGGGCTGTTATCAAAATTAGGATTCTGGGTAGTGATAA
finalCons : GTTCACCCATTATCAACTTCTAATTTATTT-CACATGCACACTT-T-T-TCCC-CCATGCC---ATTAACCCT--TGCCCGGGGCTGTTATCAAAATTAGGATTCTGGGTAGTGATAA
Alignments
lowQualScore : 5555555555555
lowQualScore : 1111111111111 4 4 2 2 333 33
lowQualScore : ............. . . . . ... ..
lowQualScore : 1111111111111 7 7 4 2 999 11
consensus : GTTCACCCATTATCAACTTCTAATTTA-TT-T-CACATGCACACTT-T-T-TCCC-CCATGCC---ATTAACCCT--TGCCCGGGGCTGTTATCAAAATTAGGATTCTGGGTAGTGATAA
Reference ( family-836 ) : GTTCACCCATTATCAACTTCTAATTTA-TT-T-CACATGCACACTT-T-T-TCCC-CCATGCC---ATTAACCCT--TGCCCGGGGCTGTTATCAAAATTAGGATTCTGGGTAGTGATAA
gi|44659 : GTTCACCCATTATCAACTTC-------------CACATGTACACTT-T-T-TCCC-CCATGCC---ATTAACCCT--TGCCCGGCGCTGTTATCAAAATTAGGATTCTGGGTAGTG
gi|44660 : GTTCTCCCATTATCAACTTC-------------CACATGTACACTT-T-T-TCCC-CCATGCC---ATTAACCCT--TGCCCGGCGCTGTTATCAAATTTAGGATTCTGGGTAGTGATAA
gi|44661 : GTTCACCCATTATCAACTTC-------------CACATGCACACTT-T-T-CCCC-CCATGCC---ATTAATCCT--TGCCTGGCGCTGTTATCAAAATTAGGATTCTAGGTAGTGATAA
gi|44662 : GTTCACCCATTATCAACTTC-------------CACATGCACACTT-T-T-TACC-CCATGCC---ATTAACCCT--TGCCCGCGACTGTTATCAAAATTTGGATTCGGGGTAGTGATAA
gi|44663 : GTTCCCCAATTATAAACTTCTAATTTA-TT-TTCACATGCACACTTCT-T-TCCC-CCATGGC---ATTAACTTT--TGCCCGGTGCTGTTATCAAAATTAGGATTCTGGGTAGTGATAA
gi|44664 : GTTCATCCATTATCAACTTCTAATTT--TT-T-CTCATGCACACTT-T-T-TCCC-CCATTT-----TTAACCAT--TGCCCGGGGCTGTTATCAAAATAAGGATTCTGGGTAGTGATAA
gi|44665 : GTTCACTTATTATCAACTTCTAATTTA-TT-TTCACAAGCACACTT-T-T-TCCC-CCATGCC---ATAAATCCT--TATCCGGGACAATTATCAAAATTAAGATACTTGGTAGTGATAA
gi|44666 : TTCACCCGTTATCATCTTC------A-------ACATGCGCACTT-T-T--CCC-CCGTGCC---ATTTACCGT--TGCCCGGGGCTGTTATCAAAATTAGGATTTTGGGTAGTTATAA
gi|44667 : TTCGCCCATTTTCAACTTCTAATCTATTT-T-CACATGCACCCTT-T-T-T-CT-CCATACC---ATTAACCCT--TGCCC-GGGCTATTATCAAAATTAGGATTTTGGGTAGTGATAA
gi|44668 : CATTATCAAGTTCTAATTTA-TTAT-CACATGCATACTTCT-T-TCCC-CCATGGC---ATTAACTCT--TGCCCGGGGCTGTTATCAAAATTAGGATTCTGGGTAGTGATAA
gi|44669 : TTA-TT-TTCACGAGCGTACTT-TCT-TTCC-ACATGCC---ATTGGCCTT--TGGCCGGGTTTGTTATCAAAATAAGGATTCTGGGTAGTGAAAA
gi|44670 : aTAATTT-----T-CACATGAACATTT-TCT-TTTC-TGAAGCC---ATTGACCTT--TGACATAGGCCGTTATTAAAGTTAAGATTCTAGGAAGTGATAA
gi|44671 : attaa-TT-T-CACGAGCACACTT-T-CCTTTC-CAATGTC---ATTGACCTT--TAACCGGATCTCTTATCAAAATTA-------GGGTAGAGATAA
gi|44672 : CGTGCACACCT-T-T----C-CAATGTC---AATGACCTT--TGGATGGAATCTTTATCAAAATAAGGATTATGGGTAGTGATAA
gi|44673 : GCACACTT-T-T-TCCC-CT-TGTC---ATTTACCCT--TGCTCGGG-CTGTTATCAAAATTAGGATTCTGGATAGTGA
gi|44674 : CAGTT-T-C-TCTCACCGAACC---ACTGACCTT--TGAACGGAGCTA--AATAAAATTAGGATTCTGGATAGTGGTAA
gi|44675 : -T-T-TTCC-CCATCAA---ATTAACTTT--TGCCCGGAGTTGTTATCAAAATACGGATTCAGGGTAGTGAAAA
gi|44676 : -CCCTGCCTAAATGAATTCTGATGCCCGGGGCTGTTATCAAAATAAGGATTTTGGGTAGTTATAA