lowQualScore                  :                            111                                                                                11                       111111                                           
lowQualScore                  :             9999999    555 666   5  2 66666    1    7              2                     5 2      55     1 5  11  2  33    1   444   2 000000 5555  33 2              3  2        2     
lowQualScore                  :             .......    ... ...   .  . .....    .    .              .                     . .      ..     . .  ..  .  ..    .   ...   . ...... ....  .. .              .  .        .     
lowQualScore                  :             3333333    000 555   9  7 77777    5    5              5                     1 4      66     9 1  55  5  44    5   444   5 000000 7777  77 7              1  9        9     
consensus                     : GCATGTCTTTTT-------GTAA---A-A-TTCGAT-G-----AAAACGTTGNGCAAAAGTATAAAA-TAATATCTAAATAATAGAAATNT-TTGCTA--ATTTTGACGATCTT-AG--CCATTAGT---TTG-C-A--T-T----TT--T-TCTCTTTTAGAATANTT-TGTCGCAA-TAAAA
Reference ( gi|156759 )       : GCATGTCTTTTT-------GTAA---A-C-TTCAAT-G-----AAAACGTTGGGCAAAAGTATAAAA-TAATATCTAAATAATAGAAATGT-TTGCTA--ATTTTGACGACCTT-AG--CCATTAGT---TTG-C-A--T-T----TT--T-TCTCTTTTAGAATAATT-TGTCGCAA-TAAAA
gi|156760                     : GCATGTCTTTTT-------GTAA---A-C-TTCAAT-G-----AAAACGTTGGGCAAAAGTATAAAA-TAATATCTAAATAATAGAAATGT-TTGCTA--ATTTTGACGACCTT-AG--CCATTAGT---TTG-C-A--T-T----TT--T-TCTCTTTTAGAATAATT-TGTCGCAA-TAAAA
gi|156761                     : GCATGTCTTTTT-------GTAA---A-A-TTCGAA-G-----AAAACGTTGTGCAACAGTATAAAA-TAACATCTAAATAATAGAATTGT-TTGCCA--ATTTTGACGATCTT-AG--CCATTAGT---TTG-CTT--T-T----TT--T-TCTCTTTTAGAATAATT-TGTCGCAA-TAAAA
gi|156762                     : GCATGTAGTTTT-------GTAA---A-AATTTGAT-G-----AAAACGTTGTGCAAAAGTATAAAA-TAATATGTAAATAATAGAAATAT-TTGCTA--ATTTTGACGATCTT-AG--CCAATAGT---T--------T-T----TT--T-TCTCTTTTAGAATAATT-TGTCACAA-TAAA
gi|156763                     : GCATGTCTTATT-------GTAA---A-A-TTCGGT-G-----AAAATGTTGAGCATAAGTATAACA-TAATATCTAAATAATAGAAATGT-TTGCTA--ATTTT---AATTTT-AT--CCATCAGC---TTG-A-A--T-T----TT--A-TCTCTTTTAGAATGTTT-TGTCGCAATTAAAA
gi|156764                     : GCATATTTTATT-------ATAA---A-A-TTCGAT-G-----AAAACATTGAGTAAAGGTATAAAA-TTATATGTAAATAATAGAGATTT-TTG-TA--A-------------------CAATATT---TTG-T-A--T-T----TT--TCTCTC-TTTATAATACTT-TTTCGCAA-TAAAA
gi|156765                     : GCATATATTTT--------GTAA---A-A-TTTGAT-G-----GAAAT------------TACAAAA-TAATACCTAAATAATA------------T----TTTTGAAGAT-TT-AG--CCAATAGT---TTG-C-A--T-T----TT--T-TCTCTATTAGAATATTT-TGTTGCAA-TAAAA
gi|156766                     :  CATGTCTTTTTTTTTTATATAA---A-A-TTCAAT-A-----AAAACGCTGTGCAAAAGTATAAAA-TATTATCTAAATAATAGAAATCT-TTGCTA--ATTTTGACAATTTT-AA--TCATAAGT---TTG-C-A--T-TTTTATT--T-TCTCTTTTAGAGTAATT-TGTAGTTA-TAAAA
gi|156768                     :    TGTTATTTT-------GTAACATA-T-TT--AT-G-----AAAAAGTTGTGCAAAATTATAATA-GAATATTCAAATTATGGAAATTG-TTGCTATTTTTTTAAAGATTTT-AAGTCTAT--AT---TTATC-A--TAT----TT--T-TATATTTTAAAATATTC-TTTCGCAA-TAAAA
gi|156767                     :    TGTTATTTT-------GTAA---A-A-T---AT-GTATAAAAAAAGTCAGGCAAAATTATAATA-AAATATTTAAATTATAGCCATTG-TTGCTA--TTTTTTAAGATTTT-AA----GTTAATATACTG-T-A--TAT----TT--T-TATATTTTAAAATATTC-TTTCGCAA-TGAAA
gi|156769                     :      TCTTTTT-------GTAA---A-A-TTCGAT-------AAATCGTTGTGTAAAAATATAAAACTAATATCTAAATAATATAA-TGT-TTGCTA--ATTTTGACAATCTT-AG--CCATAAGT---TTT-C-AT-T-T----TT--T-TCTCTTTTAGAATAATT-TGTTGCAA-TAAAA
gi|156770                     :       CTTCTT-------ATAA---A-G-TTTGCTTA-----AAAAAGTTGA-CAAAAGTATAAAA-TAATATCTAAATAATAGGGATTTGTTGCTA--ATT---------TT-AG--CCAAAAGT---TTA-A-A--TAT----TT--T-TCTCTTTTAGAATAGTG-TGTAGCGA-TAAAA
gi|156772                     :         TTTT-------GTAA---A-A-TTCGAT-G-----AAAAAGTTGAACAAAAGTATACAA-TTCTATCTAAATAATAGAAATAT-TTGCTA--ATTGTTAAGAT-----------TTAGT---TTG-CAA--A-C----AT--T-TCTCTTTAAGAAT
gi|156771                     :         TTTT-------GTAA---AAC-ATCTAT-G-----AAAATGTTGAGTAAAATTATAATA-AAATATTCAAATTATAGAAATTG-TTGCTAT-TTTTTTAAGATTTTAAG--CCTTTAGT---TTG-
gi|156773                     :         TTGT-------GTAA---A-G-TTTGAT-G-----AAAACGTTGAGCAAAAATAT-AAA-TATTATCTAAGTAATAGAGA--T-TTATTA--AT
gi|156774                     :                                    T-G-----AAAAAATTGAGCAAAAGTATAAAA-TAATATCTAAATAATAGAAGTTT-TTGCTA--ACTTTGAAGATTTT-AG--GCAAAAGT---TTA-C-A--T-A----TT--T-TCTCTTTTAGAATATTTCTTTCGCCA-TAAAA
gi|156775                     :                                                   tagaattcttTGTAAAA-TAATATCTAAATAATAGAAATGT-TTGCTA--ATTTTGACGATCTT-AT--CCATTAGT---TTG-C-ATTT-T----TT--T-TCTCTTTAAGAATAATT-TGTCGCAA-TAAAA
gi|156776                     :                                                                                        ATGT-TTGCTA--ATTTTGATGGTCTT-AG--TCATTGGT---TTG-C----T-T----TTAAT-TATCTCTTGCAATAAGT-TGTCGCAA-TAAAA





Alignments
lowQualScore                  :                                                                                                                                  111111                                           
lowQualScore                  :             8888888      2 5   2  2     33    1              2                     2 2      55     1 4   4  2  33    0   444   2 111111 5555  33      2         1  2        2     
lowQualScore                  :             .......      . .   .  .     ..    .              .                     . .      ..     . .   .  .  ..    .   ...   . ...... ....  ..      .         .  .        .     
lowQualScore                  :             7777777      5 0   5  5     33    9              4                     6 2      33     2 2   5  4  22    9   111   4 333333 3333  44      5         0  7        7     
consensus                     : GCATGTCTTTTT-------GTAAAA-T-TCG-AT-GAAAAC-GTTGNGCAAAAGTATAAAA-TAATATCTAAATAATAGAAATNT-TTGCTA--ATTTTGACGATCTT-AG--CCATTAGT---TTG-C-A--T-T----TT--TTCTCT-TTTAGAATANTT-TGTCGCAA-TAAAA
Reference ( family-835 )      : GCATGTCTTTTT-------GTAAAA-T-TCG-AT-GAAAAC-GTTGNGCAAAAGTATAAAA-TAATATCTAAATAATAGAAATNT-TTGCTA--ATTTTGACGATCTT-AG--CCATTAGT---TTG-C-A--T-T----TT--TTCTCT-TTTAGAATANTT-TGTCGCAA-TAAAA
gi|156759                     : GCATGTCTTTTT-------GTAAAC-T-TCA-AT-GAAAAC-GTTGGGCAAAAGTATAAAA-TAATATCTAAATAATAGAAATGT-TTGCTA--ATTTTGACGACCTT-AG--CCATTAGT---TTG-C-A--T-T----TT--TTCTCT-TTTAGAATAATT-TGTCGCAA-TAAAA
gi|156760                     : GCATGTCTTTTT-------GTAAAC-T-TCA-AT-GAAAAC-GTTGGGCAAAAGTATAAAA-TAATATCTAAATAATAGAAATGT-TTGCTA--ATTTTGACGACCTT-AG--CCATTAGT---TTG-C-A--T-T----TT--TTCTCT-TTTAGAATAATT-TGTCGCAA-TAAAA
gi|156761                     : GCATGTCTTTTT-------GTAAAA-T-TCG-AA-GAAAAC-GTTGTGCAACAGTATAAAA-TAACATCTAAATAATAGAATTGT-TTGCCA--ATTTTGACGATCTT-AG--CCATTAGT---TTG-CTT--T-T----TT--TTCTCT-TTTAGAATAATT-TGTCGCAA-TAAAA
gi|156762                     : GCATGTAGTTTT-------GTAAAAAT-TTG-AT-GAAAAC-GTTGTGCAAAAGTATAAAA-TAATATGTAAATAATAGAAATAT-TTGCTA--ATTTTGACGATCTT-AG--CCAATAGT---T--------T-T----TT--TTCTCT-TTTAGAATAATT-TGTCACAA-TAAA
gi|156763                     : GCATGTCTTATT-------GTAAAA-T-TCG-GT-GAAAAT-GTTGAGCATAAGTATAACA-TAATATCTAAATAATAGAAATGT-TTGCTA--ATTTT---AATTTT-AT--CCATCAGC---TTG-A-A--T-T----TT--ATCTCT-TTTAGAATGTTT-TGTCGCAATTAAAA
gi|156764                     : GCATATTTTATT-------ATAAAA-T-TCG-AT-GAAAAC-ATTGAGTAAAGGTATAAAA-TTATATGTAAATAATAGAGATTT-TTG-TA--A-------------------CAATATT---TTG-T-A----T----TT--TTCTCTCTTTATAATACTT-TTTCGCAA-TAAAA
gi|156765                     : GCATATATTTT--------GTAAAA-T-TTG-AT-GGAAAT-------------TACAAAA-TAATACCTAAATAATA------------T----TTTTGAAGAT-TT-AG--CCAATAGT---TTG-C-A--T-T----TT--TTCTCT-ATTAGAATATTT-TGTTGCAA-TAAAA
gi|156766                     :  CATGTCTTTTTTTTTTATATAAAA-T-TCA-AT-AAAAAC-GCTGTGCAAAAGTATAAAA-TATTATCTAAATAATAGAAATCT-TTGCTA--ATTTTGACAATTTT-AA--TCATAAGT---TTG-C-A--T-TTTTATT--TTCTCT-TTTAGAGTAATT-TGTAGTTA-TAAAA
gi|156767                     :    TGTTATTTT-------GTAAAA-T-ATGTAT-AAAAAAAGTCAGGCAAAATTATAATA-AAATATTTAAATTATAGCCATTG-TTGCTA--TTTTTTAAGATTTT-AA----GTTAATATACTG-T-A--TAT----TT--TTATAT-TTTAAAATATTC-TTTCGCAA-TGAAA
gi|156768                     :    TGTTATTTT-------GTAACA-TATTT-AT-GAAAAA-GTTGTGCAAAATTATAATA-GAATATTCAAATTATGGAAATTG-TTGCTATTTTTTTAAAGATTTT-AAGTCTAT--AT---TTATC-A--TAT----TT--TTATAT-TTTAAAATATTC-TTTCGCAA-TAAAA
gi|156769                     :      TCTTTTT-------GTAAAA-T-TCG-AT--AAATC-GTTGTGTAAAAATATAAAACTAATATCTAAATAATATAA-TGT-TTGCTA--ATTTTGACAATCTT-AG--CCATAAGT---TTT-C-AT-T-T----TT--TTCTCT-TTTAGAATAATT-TGTTGCAA-TAAAA
gi|156770                     :       CTTCTT-------ATAAAG-T-TTG-CTTAAAAAA-GTTGA-CAAAAGTATAAAA-TAATATCTAAATAATAGGGATTTGTTGCTA--ATT---------TT-AG--CCAAAAGT---TTA-A-A--TAT----TT--TTCTCT-TTTAGAATAGTG-TGTAGCGA-TAAAA
gi|156771                     :         TTTT-------GTAAAA-CATCT-AT-GAAAAT-GTTGAGTAAAATTATAATA-AAATATTCAAATTATAGAAATTG-TTGCTAT-TTTTTTAAGATTTTAAG--CCTTTAGT---TTG-
gi|156772                     :         TTTT-------GTAAAA-T-TCG-AT-GAAAAA-GTTGAACAAAAGTATACAA-TTCTATCTAAATAATAGAAATAT-TTGCTA--ATTGTTAAGAT-----------TTAGT---TTG-CAA--A-C----AT--TTCTCT-TTAAGAAT
gi|156773                     :         TTGT-------GTAAAG-T-TTG-AT-GAAAAC-GTTGAGCAAAAATAT-AAA-TATTATCTAAGTAATAGAGA--T-TTATTA--AT
gi|156774                     :                     TAGAA-T-TCT-TT-GAAAAA-ATTGAGCAAAAGTATAAAA-TAATATCTAAATAATAGAAGTTT-TTGCTA--ACTTTGAAGATTTT-AG--GCAAAAGT---TTA-C-A--T-A----TT--TTCTCT-TTTAGAATATTTCTTTCGCCA-TAAAA
gi|156775                     :                                                       TGTAAAA-TAATATCTAAATAATAGAAATGT-TTGCTA--ATTTTGACGATCTT-AT--CCATTAGT---TTG-C-ATTT-T----TT--TTCTCT-TTAAGAATAATT-TGTCGCAA-TAAAA
gi|156776                     :                                                                                  ATGT-TTGCTA--ATTTTGATGGTCTT-AG--TCATTGGT---TTG-C----T-T----TTAATTATCT-CTTGCAATAAGT-TGTCGCAA-TAAAA





Alignments
lowQualScore                  :                                                                                                                                  111111                                           
lowQualScore                  :             8888888      2 5   2  2     33    1              2                     2 2      55     1 4   4  2  33    0   444   2 111111 5555  33      2         1  2        2     
lowQualScore                  :             .......      . .   .  .     ..    .              .                     . .      ..     . .   .  .  ..    .   ...   . ...... ....  ..      .         .  .        .     
lowQualScore                  :             7777777      5 0   5  5     33    9              4                     6 2      33     2 2   5  4  22    9   111   4 333333 3333  44      5         0  7        7     
consensus                     : GCATGTCTTTTT-------GTAAAA-T-TCG-AT-GAAAAC-GTTGNGCAAAAGTATAAAA-TAATATCTAAATAATAGAAATNT-TTGCTA--ATTTTGACGATCTT-AG--CCATTAGT---TTG-C-A--T-T----TT--TTCTCT-TTTAGAATANTT-TGTCGCAA-TAAAA
Reference ( family-835 )      : GCATGTCTTTTT-------GTAAAA-T-TCG-AT-GAAAAC-GTTGNGCAAAAGTATAAAA-TAATATCTAAATAATAGAAATNT-TTGCTA--ATTTTGACGATCTT-AG--CCATTAGT---TTG-C-A--T-T----TT--TTCTCT-TTTAGAATANTT-TGTCGCAA-TAAAA
gi|156759                     : GCATGTCTTTTT-------GTAAAC-T-TCA-AT-GAAAAC-GTTGGGCAAAAGTATAAAA-TAATATCTAAATAATAGAAATGT-TTGCTA--ATTTTGACGACCTT-AG--CCATTAGT---TTG-C-A--T-T----TT--TTCTCT-TTTAGAATAATT-TGTCGCAA-TAAAA
gi|156760                     : GCATGTCTTTTT-------GTAAAC-T-TCA-AT-GAAAAC-GTTGGGCAAAAGTATAAAA-TAATATCTAAATAATAGAAATGT-TTGCTA--ATTTTGACGACCTT-AG--CCATTAGT---TTG-C-A--T-T----TT--TTCTCT-TTTAGAATAATT-TGTCGCAA-TAAAA
gi|156761                     : GCATGTCTTTTT-------GTAAAA-T-TCG-AA-GAAAAC-GTTGTGCAACAGTATAAAA-TAACATCTAAATAATAGAATTGT-TTGCCA--ATTTTGACGATCTT-AG--CCATTAGT---TTG-CTT--T-T----TT--TTCTCT-TTTAGAATAATT-TGTCGCAA-TAAAA
gi|156762                     : GCATGTAGTTTT-------GTAAAAAT-TTG-AT-GAAAAC-GTTGTGCAAAAGTATAAAA-TAATATGTAAATAATAGAAATAT-TTGCTA--ATTTTGACGATCTT-AG--CCAATAGT---T--------T-T----TT--TTCTCT-TTTAGAATAATT-TGTCACAA-TAAA
gi|156763                     : GCATGTCTTATT-------GTAAAA-T-TCG-GT-GAAAAT-GTTGAGCATAAGTATAACA-TAATATCTAAATAATAGAAATGT-TTGCTA--ATTTT---AATTTT-AT--CCATCAGC---TTG-A-A--T-T----TT--ATCTCT-TTTAGAATGTTT-TGTCGCAATTAAAA
gi|156764                     : GCATATTTTATT-------ATAAAA-T-TCG-AT-GAAAAC-ATTGAGTAAAGGTATAAAA-TTATATGTAAATAATAGAGATTT-TTG-TA--A-------------------CAATATT---TTG-T-A----T----TT--TTCTCTCTTTATAATACTT-TTTCGCAA-TAAAA
gi|156765                     : GCATATATTTT--------GTAAAA-T-TTG-AT-GGAAAT-------------TACAAAA-TAATACCTAAATAATA------------T----TTTTGAAGAT-TT-AG--CCAATAGT---TTG-C-A--T-T----TT--TTCTCT-ATTAGAATATTT-TGTTGCAA-TAAAA
gi|156766                     :  CATGTCTTTTTTTTTTATATAAAA-T-TCA-AT-AAAAAC-GCTGTGCAAAAGTATAAAA-TATTATCTAAATAATAGAAATCT-TTGCTA--ATTTTGACAATTTT-AA--TCATAAGT---TTG-C-A--T-TTTTATT--TTCTCT-TTTAGAGTAATT-TGTAGTTA-TAAAA
gi|156767                     :    TGTTATTTT-------GTAAAA-T-ATGTAT-AAAAAAAGTCAGGCAAAATTATAATA-AAATATTTAAATTATAGCCATTG-TTGCTA--TTTTTTAAGATTTT-AA----GTTAATATACTG-T-A--TAT----TT--TTATAT-TTTAAAATATTC-TTTCGCAA-TGAAA
gi|156768                     :    TGTTATTTT-------GTAACA-TATTT-AT-GAAAAA-GTTGTGCAAAATTATAATA-GAATATTCAAATTATGGAAATTG-TTGCTATTTTTTTAAAGATTTT-AAGTCTAT--AT---TTATC-A--TAT----TT--TTATAT-TTTAAAATATTC-TTTCGCAA-TAAAA
gi|156769                     :      TCTTTTT-------GTAAAA-T-TCG-AT--AAATC-GTTGTGTAAAAATATAAAACTAATATCTAAATAATATAA-TGT-TTGCTA--ATTTTGACAATCTT-AG--CCATAAGT---TTT-C-AT-T-T----TT--TTCTCT-TTTAGAATAATT-TGTTGCAA-TAAAA
gi|156770                     :       CTTCTT-------ATAAAG-T-TTG-CTTAAAAAA-GTTGA-CAAAAGTATAAAA-TAATATCTAAATAATAGGGATTTGTTGCTA--ATT---------TT-AG--CCAAAAGT---TTA-A-A--TAT----TT--TTCTCT-TTTAGAATAGTG-TGTAGCGA-TAAAA
gi|156771                     :         TTTT-------GTAAAA-CATCT-AT-GAAAAT-GTTGAGTAAAATTATAATA-AAATATTCAAATTATAGAAATTG-TTGCTAT-TTTTTTAAGATTTTAAG--CCTTTAGT---TTG-
gi|156772                     :         TTTT-------GTAAAA-T-TCG-AT-GAAAAA-GTTGAACAAAAGTATACAA-TTCTATCTAAATAATAGAAATAT-TTGCTA--ATTGTTAAGAT-----------TTAGT---TTG-CAA--A-C----AT--TTCTCT-TTAAGAAT
gi|156773                     :         TTGT-------GTAAAG-T-TTG-AT-GAAAAC-GTTGAGCAAAAATAT-AAA-TATTATCTAAGTAATAGAGA--T-TTATTA--AT
gi|156774                     :                     TAGAA-T-TCT-TT-GAAAAA-ATTGAGCAAAAGTATAAAA-TAATATCTAAATAATAGAAGTTT-TTGCTA--ACTTTGAAGATTTT-AG--GCAAAAGT---TTA-C-A--T-A----TT--TTCTCT-TTTAGAATATTTCTTTCGCCA-TAAAA
gi|156775                     :                                                       TGTAAAA-TAATATCTAAATAATAGAAATGT-TTGCTA--ATTTTGACGATCTT-AT--CCATTAGT---TTG-C-ATTT-T----TT--TTCTCT-TTAAGAATAATT-TGTCGCAA-TAAAA
gi|156776                     :                                                                                  ATGT-TTGCTA--ATTTTGATGGTCTT-AG--TCATTGGT---TTG-C----T-T----TTAATTATCT-CTTGCAATAAGT-TGTCGCAA-TAAAA


blockSeqs                     :             TTTTTAT      A A   T  T     AA    G              C                     G G      TT     G C   C  A  GT        ATA   T ATTT   TTTA  AA      C         A  C        T
blockSeqs                     :             .            . A   .  .     C     T              .                     G .      T      G C   C  .  .         .     . TTT    .     .       .         A  .        .
blockSeqs                     :             .            . .   .  .     C     T              .                     A .      .      G C   C  .  .         .     . ATA    .     .       .         A  .        .
blockSeqs                     :             .            . .   .  .     C     A              .                     G .      .      G A   T  .  .         .     . ATA    .     .       .         T  .        .
blockSeqs                     :             .            . .   .  .     T     A              .                     T .      .      G C   T  .  .         .     . ATT    .     .       .         C  .        .
blockSeqs                     :             .            . .   .  .     C     T              .                     C .      .      T A   T  .  .         .     . ATA    .     .       .         T  .        .
blockSeqs                     :             .            . .   .  .     T     G              .                     T .      .      A A   T  .  .         .     . AAA    .     .       .         A  .        .
blockSeqs                     :             .            . .   .  .     C     T              .                     T .      .      G C   C  .  .         .     . AT     .     .       .         T  .        .
blockSeqs                     :             .            . .   .  .     A     T              .                     G .      .      T A   T  .  .         .     . AT     .     .       .         T  .        .
blockSeqs                     :             .            . .   .  .     C     A              .                     T .      .      T A   T  .  .         .     . AT     .     .       .         A  .        .
blockSeqs                     :             .            . .   .  .     A     A              .                     T .      .      G A   C  .  .         .     . AT     .     .       .         G  .        .
blockSeqs                     :             .            . .   .  .     T     A              .                     A .      .      G C   C  .  .         .     . AT     .     .       .         T  .        .
blockSeqs                     :             .            . .   .  .     A     A              .                     T .      .      G T   .  .  .         .     . T      .     .       .         A  .        .
blockSeqs                     :             .            . .   .  .     C     A              .                     G .      .      . .   .  .  .         .     . A      .     .       .         A  .        .
blockSeqs                     :                          . .   .  .     A     .              .                     G .      .      . .   .  .  .         .     . T      .     .       .                      
blockSeqs                     :                                                              .                     . .      .      . .   .  .  .         .     .                                             
blockSeqs                     :                                                                                    . .      .                                                                                


blockSeqCons                  :                                                                                                                                  AT****
originalCons                  : GCATGTCTTTTT-------GTAAAA-T-TCG-AT-GAAAAC-GTTGNGCAAAAGTATAAAA-TAATATCTAAATAATAGAAATNT-TTGCTA--ATTTTGACGATCTT-AG--CCATTAGT---TTG-C-A--T-T----TT--TTCTCT-TTTAGAATANTT-TGTCGCAA-TAAAA
finalCons                     : GCATGTCTTTTT-------GTAAAA-T-TCG-AT-GAAAAC-GTTGNGCAAAAGTATAAAA-TAATATCTAAATAATAGAAATNT-TTGCTA--ATTTTGACGATCTT-AG--CCATTAGT---TTG-CAT----T----TT--TTCTCT-TTTAGAATANTT-TGTCGCAA-TAAAA





Alignments
lowQualScore                  :                                                                                                                                  111111                                           
lowQualScore                  :             8888888      2 5   2  2     33    1              2                     2 2      55     1 4   4  2  33    0   444   2 111111 5555  33      2         1  2        2     
lowQualScore                  :             .......      . .   .  .     ..    .              .                     . .      ..     . .   .  .  ..    .   ...   . ...... ....  ..      .         .  .        .     
lowQualScore                  :             7777777      5 0   5  5     33    9              4                     6 2      33     2 2   5  4  22    9   111   4 333333 3333  44      5         0  7        7     
consensus                     : GCATGTCTTTTT-------GTAAAA-T-TCG-AT-GAAAAC-GTTGNGCAAAAGTATAAAA-TAATATCTAAATAATAGAAATNT-TTGCTA--ATTTTGACGATCTT-AG--CCATTAGT---TTG-C-A--T-T----TT--TTCTCT-TTTAGAATANTT-TGTCGCAA-TAAAA
Reference ( family-835 )      : GCATGTCTTTTT-------GTAAAA-T-TCG-AT-GAAAAC-GTTGNGCAAAAGTATAAAA-TAATATCTAAATAATAGAAATNT-TTGCTA--ATTTTGACGATCTT-AG--CCATTAGT---TTG-C-A--T-T----TT--TTCTCT-TTTAGAATANTT-TGTCGCAA-TAAAA
gi|156759                     : GCATGTCTTTTT-------GTAAAC-T-TCA-AT-GAAAAC-GTTGGGCAAAAGTATAAAA-TAATATCTAAATAATAGAAATGT-TTGCTA--ATTTTGACGACCTT-AG--CCATTAGT---TTG-C-A--T-T----TT--TTCTCT-TTTAGAATAATT-TGTCGCAA-TAAAA
gi|156760                     : GCATGTCTTTTT-------GTAAAC-T-TCA-AT-GAAAAC-GTTGGGCAAAAGTATAAAA-TAATATCTAAATAATAGAAATGT-TTGCTA--ATTTTGACGACCTT-AG--CCATTAGT---TTG-C-A--T-T----TT--TTCTCT-TTTAGAATAATT-TGTCGCAA-TAAAA
gi|156761                     : GCATGTCTTTTT-------GTAAAA-T-TCG-AA-GAAAAC-GTTGTGCAACAGTATAAAA-TAACATCTAAATAATAGAATTGT-TTGCCA--ATTTTGACGATCTT-AG--CCATTAGT---TTG-CTT--T-T----TT--TTCTCT-TTTAGAATAATT-TGTCGCAA-TAAAA
gi|156762                     : GCATGTAGTTTT-------GTAAAAAT-TTG-AT-GAAAAC-GTTGTGCAAAAGTATAAAA-TAATATGTAAATAATAGAAATAT-TTGCTA--ATTTTGACGATCTT-AG--CCAATAGT---T--------T-T----TT--TTCTCT-TTTAGAATAATT-TGTCACAA-TAAA
gi|156763                     : GCATGTCTTATT-------GTAAAA-T-TCG-GT-GAAAAT-GTTGAGCATAAGTATAACA-TAATATCTAAATAATAGAAATGT-TTGCTA--ATTTT---AATTTT-AT--CCATCAGC---TTG-A-A--T-T----TT--ATCTCT-TTTAGAATGTTT-TGTCGCAATTAAAA
gi|156764                     : GCATATTTTATT-------ATAAAA-T-TCG-AT-GAAAAC-ATTGAGTAAAGGTATAAAA-TTATATGTAAATAATAGAGATTT-TTG-TA--A-------------------CAATATT---TTG-T-A----T----TT--TTCTCTCTTTATAATACTT-TTTCGCAA-TAAAA
gi|156765                     : GCATATATTTT--------GTAAAA-T-TTG-AT-GGAAAT-------------TACAAAA-TAATACCTAAATAATA------------T----TTTTGAAGAT-TT-AG--CCAATAGT---TTG-C-A--T-T----TT--TTCTCT-ATTAGAATATTT-TGTTGCAA-TAAAA
gi|156766                     :  CATGTCTTTTTTTTTTATATAAAA-T-TCA-AT-AAAAAC-GCTGTGCAAAAGTATAAAA-TATTATCTAAATAATAGAAATCT-TTGCTA--ATTTTGACAATTTT-AA--TCATAAGT---TTG-C-A--T-TTTTATT--TTCTCT-TTTAGAGTAATT-TGTAGTTA-TAAAA
gi|156767                     :    TGTTATTTT-------GTAAAA-T-ATGTAT-AAAAAAAGTCAGGCAAAATTATAATA-AAATATTTAAATTATAGCCATTG-TTGCTA--TTTTTTAAGATTTT-AA----GTTAATATACTG-T-A--TAT----TT--TTATAT-TTTAAAATATTC-TTTCGCAA-TGAAA
gi|156768                     :    TGTTATTTT-------GTAACA-TATTT-AT-GAAAAA-GTTGTGCAAAATTATAATA-GAATATTCAAATTATGGAAATTG-TTGCTATTTTTTTAAAGATTTT-AAGTCTAT--AT---TTATC-A--TAT----TT--TTATAT-TTTAAAATATTC-TTTCGCAA-TAAAA
gi|156769                     :      TCTTTTT-------GTAAAA-T-TCG-AT--AAATC-GTTGTGTAAAAATATAAAACTAATATCTAAATAATATAA-TGT-TTGCTA--ATTTTGACAATCTT-AG--CCATAAGT---TTT-C-AT-T-T----TT--TTCTCT-TTTAGAATAATT-TGTTGCAA-TAAAA
gi|156770                     :       CTTCTT-------ATAAAG-T-TTG-CTTAAAAAA-GTTGA-CAAAAGTATAAAA-TAATATCTAAATAATAGGGATTTGTTGCTA--ATT---------TT-AG--CCAAAAGT---TTA-A-A--TAT----TT--TTCTCT-TTTAGAATAGTG-TGTAGCGA-TAAAA
gi|156771                     :         TTTT-------GTAAAA-CATCT-AT-GAAAAT-GTTGAGTAAAATTATAATA-AAATATTCAAATTATAGAAATTG-TTGCTAT-TTTTTTAAGATTTTAAG--CCTTTAGT---TTG-
gi|156772                     :         TTTT-------GTAAAA-T-TCG-AT-GAAAAA-GTTGAACAAAAGTATACAA-TTCTATCTAAATAATAGAAATAT-TTGCTA--ATTGTTAAGAT-----------TTAGT---TTG-CAA--A-C----AT--TTCTCT-TTAAGAAT
gi|156773                     :         TTGT-------GTAAAG-T-TTG-AT-GAAAAC-GTTGAGCAAAAATAT-AAA-TATTATCTAAGTAATAGAGA--T-TTATTA--AT
gi|156774                     :                     TAGAA-T-TCT-TT-GAAAAA-ATTGAGCAAAAGTATAAAA-TAATATCTAAATAATAGAAGTTT-TTGCTA--ACTTTGAAGATTTT-AG--GCAAAAGT---TTA-C-A--T-A----TT--TTCTCT-TTTAGAATATTTCTTTCGCCA-TAAAA
gi|156775                     :                                                       TGTAAAA-TAATATCTAAATAATAGAAATGT-TTGCTA--ATTTTGACGATCTT-AT--CCATTAGT---TTG-C-ATTT-T----TT--TTCTCT-TTAAGAATAATT-TGTCGCAA-TAAAA
gi|156776                     :                                                                                  ATGT-TTGCTA--ATTTTGATGGTCTT-AG--TCATTGGT---TTG-C----T-T----TTAATTATCT-CTTGCAATAAGT-TGTCGCAA-TAAAA