lowQualScore                  :                                                         33                                                    1               22222222222222222222         111111111111111                   
lowQualScore                  :                                   55                1   66         4444 0            3      2           55 2  9   2           77777777777777777777   2     999999999999999                   
lowQualScore                  :                                   ..                .   ..         .... .            .      .           .. .  .   .           ....................   .     ...............                   
lowQualScore                  :                                   55                3   22         7777 3            0      4           66 4  4   2           77777777777777777777   4     777777777777777                   
consensus                     : AAAAAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTT--CTTTGTACG----CGCGCATACTGTCCCTTTACA-ATGTTTTACAC--T-TTTTTT-ACAATGTTTAC-------------------CGTA-GGCCT---------------ATACGTCACATTGTTTCAA
Reference ( gi|94087 )        : AAAAAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTTTCTTTGTACG----CACGCATACTGTCCCTTTACA-ATGTTTTACAC--T-TTGTTT-ACAATGTTTAC-------------------TGTA-GGCCT---------------ATACGTCACATTGTTTCAA
gi|94088                      : AAAGAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG--TTTTCTTTGTACA----TGTGCATACTGTCCCTTTACA-ATGTTTTACACTTT-TTTTTT-ACAATGTTTAC-------------------CGTA-GGCCT---------------ATACGTCACATTGTTTCAA
gi|94091                      : AAAAAATACCACTAAATAAAAGATATTACTTTACGAGAAATTTGTGTTTTAGTCTT--CTTTGTACG----CACGCATACTGTCCATTTATA-ATGTTTTACAC--T-TTTTTT-ACAATGTTTAC-------------------CGTA-GGCCT---------------ATACGTCACATTGT
gi|94089                      : AAAAAATACCGCTAAATAAACGATATTACTTCACTAGAAACTTGTATTTTAGTTTT--CTTTGTACGAGTGCATACATACTGTCCCTTTACA-ATGTTTTACAC--T-TTTTTT-ATAATGTTTAC-------------------CGTA-GGACT---------------ATACATCACATTGTTTCAA
gi|94090                      : AAAAAATATCACTAAATAAAATATATTACTTCACTAGAAACGTGTGTTTTAGTTTT--CTTTGTACT----TGCACATGCTGTCCCTTTACA-ATGTTTTATAC--T-ATTTTT-AAAATGTTTAC-------------------CGTA-GGTCT---------------ATATGTCACATTGTTTCAA
gi|94092                      : AAAAAATATCACTAAATAAAAGATATTACTTATCTTGAAACTTGTGTTTTAG--TTTTCTTTGTACA----CCCCCATACTGTCCTTTTACA-ATGTTTTACGCT-T-TTTTTT-ACAATGATTAC-------------------CGTA-GGTCT---------------ATATCACACATTGTTTCAA
gi|94093                      : AAAAAATACCACTCTATAAAAGATATTACTTCACT--AGACTTGTGTTTTAGTTTT--CTTTGTACG----CGCGCATACTGTCCCTTTACA-ATGTTTTACAC--T-TTTTTT-ACAATGTTTA
gi|94094                      : AAAAAATACCACTTAAT------------TTCACATGAAACTTGTGTTTTAGTTTT--CTTTGTACA----CGCACATACTGTCCCTTTACT-ATGTTTTACAC--T-TT-TTT-ACATTGTTTAC-------------------CATA-GGTCTATAG-----------ATACGTCACATTGTTTCAAaataaatgaaggattat
gi|94095                      : AAAAAATACCACTAAATAAAAGAT-----------------------TTTAGTTTT--CTTTGTACT----CACGCATACTGTCCTTTAACA-ATGATTTACAC--T-TTTTTTTACAATGTTTAC-------------------CATA-GGCCT---------------ATACGTCACATTGTTTCAA
gi|94096                      : AAAAAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG--TTTTCATTGTACT----CACGCATA
gi|94097                      : AAAAAATACCACTAAATAAATGATATTACTTCACTTGAAACTTGTGTTTTCACTTTTACAATGT----------TTATACT-TTTTTTTACA-ATGT-------------------------TTAC-------------------CATA-GGCCT---------------ATACTTCACATT
gi|94098                      :  AAAAATACCACTACATAAAAGATTATACTTCACTAGAAACTTGTGCTTTAGGTTTTT-TTTGTATG----CGCGCATGCTGTCCCTTTACA-ATGTTTTACAC--T-TTTTTT-ACAATGTTTAC-------------------TGTA-GGTAT---------------TTATGTCACCTTGTTTCAA
gi|94101                      :    AAATACCACTAAATAAAAGATATTACTT-ACTAGAAACTTGTGTTTT-GTTTT---TTTGTATA----CGCGCATACTATCC--TTACATATGTAATACAT--T-TTTTTA-ACAATGTTTAC-------------------CATA-GGCCTATTCTTAGCATAAAAATATGTCACATTGTTTCAA
gi|94102                      :                 TAGAAGATATTAATTCACTTGAAACTTGTGTTTTAGTTTT--CTTTGTACG----CACACATACTTTTCTGTTACA-ATGTTTTACAC--T-TTTTTT-ACAATGTTTACCGAT---------------TGTT-GGCCG---------------ATACGTCGCATTGTTTCAA
gi|94103                      :                 TAGAAGATATTTCTTCACATGAAACTTGTGTTTTAGTTTT--CTTTGTACG----TACGCATACTGTCC-----------TTTTAC-------------ACAATGTCTAC-------------------CGTA-GGCCT---------------ATACGTCACATTGTTTCAA
gi|94104                      :                    AATATATTACTTTACTT--------------AGTTTT--CTTTGTACG----CACGCATAATGTCCTTTTACA-ATGTTTTACAC--TGTTTTTT-ACAATGTTTAC-------------------CGTA-GGCCT---------------ATACGTCACATTGTTTCAA
gi|94105                      :                               TCAC---AAACTTGTGTTTTAGTTTT--CTTTGTACG----CACGCATACTGTCCTTTTACA-ATGTTTTACAC--T-TTTTTT-ACAATGTTTAC-------------------TGTA-GGCCT---------------ATACGTCACATTGTTTCAA
gi|94099                      :                                      AAACATGTGTTTTAATTTT--CTTTGTACG----CGCGCATACTGTCCCTTTACA-ATGTTTTACAA--T-TT-TTT-ACAATGTTTAC-------------------CGTA-AGTCT---------------ATACGTCACATTGTTTGAA
gi|94100                      :           aaaaatgatcataaagagaaacaatatAAACTTGTGTTTTAGTTTT--CTTTGTACG----CGCGCATACTGTCCCTTTACA-ATGTTTTACAC--T-TT-TTT-ACAATGTTTACCATAAAAAACAATGTGACGTATA-GACC----------------ATACGTCACATTGTTTGAA
gi|94100                      :                                                                                        aaaaatgatcataaagagaaacaatat-ACAATGTG-AC--------------------GTATGGTCT---------------ATACGTCACATTGTTT





Alignments
lowQualScore                  :                                                                                                                                   1111                         11111111111            111111111111111                   
lowQualScore                  :                                                            4                2    22                 4444      0      2      2     0000                  5555   11111111111   7777777  999999999999999                   
lowQualScore                  :                                                            .                .    ..                 ....      .      .      .     ....                  ....   ...........   .......  ...............                   
lowQualScore                  :                                                            4                1    99                 5555      9      2      2     2222                  0000   22222222222   6666666  777777777777777                   
consensus                     :                         AAAAAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG-TTTT--CTTTGTACGCGCGCATA----CTGTCCCTTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
Reference ( family-828 )      :                         AAAAAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG-TTTT--CTTTGTACGCGCGCATA----CTGTCCCTTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94087                      :                         AAAAAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG-TTTTTTCTTTGTACGCACGCATA----CTGTCCCTTTACA-ATGTTT-TACAC--T-TTGTTTACAATGTTTACT----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94088                      :                         AAAGAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG-TTTT--CTTTGTACATGTGCATA----CTGTCCCTTTACA-ATGTTT-TACACTTT-TTTTTTACAATGTTTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94089                      :                         AAAAAATACCGCTAAATAAACGATATTACTTCACTAGAAACTTGTATTTTAG-TTTT--CTTTGTACGAGTGCATACATACTGTCCCTTTACA-ATGTTT-TACAC--T-TTTTTTATAATGTTTACC----GTA-----------GGA-------CT---------------ATACATCACATTGTTTCAA
gi|94090                      :                         AAAAAATATCACTAAATAAAATATATTACTTCACTAGAAACGTGTGTTTTAG-TTTT--CTTTGTACTTGCACATG----CTGTCCCTTTACA-ATGTTT-TATAC--T-ATTTTTAAAATGTTTACC----GTA-----------GGT-------CT---------------ATATGTCACATTGTTTCAA
gi|94091                      :                         AAAAAATACCACTAAATAAAAGATATTACTTTACGAGAAATTTGTGTTTTAG-TCTT--CTTTGTACGCACGCATA----CTGTCCATTTATA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGT
gi|94092                      :                         AAAAAATATCACTAAATAAAAGATATTACTTATCTTGAAACTTGTGTTTTAG-TTTT--CTTTGTACACCCCCATA----CTGTCCTTTTACA-ATGTTT-TACGCT-T-TTTTTTACAATGATTACC----GTA-----------GGT-------CT---------------ATATCACACATTGTTTCAA
gi|94093                      :                         AAAAAATACCACTCTATAAAAGATATTACTTCACT--AGACTTGTGTTTTAG-TTTT--CTTTGTACGCGCGCATA----CTGTCCCTTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTA
gi|94094                      :                         AAAAAATACCACTTAAT------------TTCACATGAAACTTGTGTTTTAG-TTTT--CTTTGTACACGCACATA----CTGTCCCTTTACT-ATGTTT-TACAC----TTTTTTACATTGTTTACC----ATA-----------GGT-------CTATAG-----------ATACGTCACATTGTTTCAAaataaatgaaggattat
gi|94095                      :                         AAAAAATACCACTAAATAAAAGAT-----------------------TTTAG-TTTT--CTTTGTACTCACGCATA----CTGTCCTTTAACA-ATGATT-TACACT-T-TTTTTTACAATGTTTACC----ATA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94096                      :                         AAAAAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG-TTTT--CATTGTACTCACGCATA----
gi|94097                      :                         AAAAAATACCACTAAATAAATGATATTACTTCACTTGAAACTTGTGTTTT------------------------CA----CT-----TTTACA-ATGTTTATAC-T--T-TTTTTTACAATGTTTACC----ATA-----------GGC-------CT---------------ATACTTCACATT
gi|94098                      :                          AAAAATACCACTACATAAAAGATTATACTTCACTAGAAACTTGTGCTTTAGGTTTT--TTTTGTATGCGCGCATG----CTGTCCCTTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACT----GTA-----------GGT-------AT---------------TTATGTCACCTTGTTTCAA
gi|94099                      :                                                              AAACATGTGTTTTAA-TTTT--CTTTGTACGCGCGCATA----CTGTCCCTTTACA-ATGTTT-TACAA----TTTTTTACAATGTTTACC----GTA-----------AGT-------CT---------------ATACGTCACATTGTTTGAA
gi|94100                      :                                   aaaaatgatcataaagagaaacaatatAAACTTGTGTTTTAG-TTTT--CTTTGTACGCGCGCATA----CTGTCCCTTTACA-ATGTTT-TACAC----TTTTTTACAATGTTTACC----ATAAAAAACAATGTGACGTATAGACC---------------ATACGTCACATTGTTTGAA
gi|94101                      : aaaaatgatcataaagagaaacaatatAAATACCACTAAATAAAAGATATTACTT-ACTAGAAACTTGTGTTTT-G-TTTT---TTTGTATACGCGCATA----CTATCC--TTACATATGTAA-TACAT--T-TTTTTAACAATGTTTACC----ATA-----------GGC-------CTATTCTTAGCATAAAAATATGTCACATTGTTTCAA
gi|94102                      :                                         TAGAAGATATTAATTCACTTGAAACTTGTGTTTTAG-TTTT--CTTTGTACGCACACATA----CTTTTCTGTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACCGATTGTT-----------GGC-------CG---------------ATACGTCGCATTGTTTCAA
gi|94103                      :                                         TAGAAGATATTTCTTCACATGAAACTTGTGTTTTAG-TTTT--CTTTGTACGTACGCATA----CTGTCCTTTTAC------------------------ACAATGTCTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94104                      :                                            AATATATTACTTTACTT--------------AG-TTTT--CTTTGTACGCACGCATA----ATGTCCTTTTACA-ATGTTT-TACAC--TGTTTTTTACAATGTTTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94105                      :                                                       TCAC---AAACTTGTGTTTTAG-TTTT--CTTTGTACGCACGCATA----CTGTCCTTTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACT----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA





Alignments
lowQualScore                  :                                                                                                                                   1111                         11111111111            111111111111111                   
lowQualScore                  :                                                            4                2    22                 4444      0      2      2     0000                  5555   11111111111   7777777  999999999999999                   
lowQualScore                  :                                                            .                .    ..                 ....      .      .      .     ....                  ....   ...........   .......  ...............                   
lowQualScore                  :                                                            4                1    99                 5555      9      2      2     2222                  0000   22222222222   6666666  777777777777777                   
consensus                     :                         AAAAAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG-TTTT--CTTTGTACGCGCGCATA----CTGTCCCTTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
Reference ( family-828 )      :                         AAAAAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG-TTTT--CTTTGTACGCGCGCATA----CTGTCCCTTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94087                      :                         AAAAAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG-TTTTTTCTTTGTACGCACGCATA----CTGTCCCTTTACA-ATGTTT-TACAC--T-TTGTTTACAATGTTTACT----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94088                      :                         AAAGAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG-TTTT--CTTTGTACATGTGCATA----CTGTCCCTTTACA-ATGTTT-TACACTTT-TTTTTTACAATGTTTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94089                      :                         AAAAAATACCGCTAAATAAACGATATTACTTCACTAGAAACTTGTATTTTAG-TTTT--CTTTGTACGAGTGCATACATACTGTCCCTTTACA-ATGTTT-TACAC--T-TTTTTTATAATGTTTACC----GTA-----------GGA-------CT---------------ATACATCACATTGTTTCAA
gi|94090                      :                         AAAAAATATCACTAAATAAAATATATTACTTCACTAGAAACGTGTGTTTTAG-TTTT--CTTTGTACTTGCACATG----CTGTCCCTTTACA-ATGTTT-TATAC--T-ATTTTTAAAATGTTTACC----GTA-----------GGT-------CT---------------ATATGTCACATTGTTTCAA
gi|94091                      :                         AAAAAATACCACTAAATAAAAGATATTACTTTACGAGAAATTTGTGTTTTAG-TCTT--CTTTGTACGCACGCATA----CTGTCCATTTATA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGT
gi|94092                      :                         AAAAAATATCACTAAATAAAAGATATTACTTATCTTGAAACTTGTGTTTTAG-TTTT--CTTTGTACACCCCCATA----CTGTCCTTTTACA-ATGTTT-TACGCT-T-TTTTTTACAATGATTACC----GTA-----------GGT-------CT---------------ATATCACACATTGTTTCAA
gi|94093                      :                         AAAAAATACCACTCTATAAAAGATATTACTTCACT--AGACTTGTGTTTTAG-TTTT--CTTTGTACGCGCGCATA----CTGTCCCTTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTA
gi|94094                      :                         AAAAAATACCACTTAAT------------TTCACATGAAACTTGTGTTTTAG-TTTT--CTTTGTACACGCACATA----CTGTCCCTTTACT-ATGTTT-TACAC----TTTTTTACATTGTTTACC----ATA-----------GGT-------CTATAG-----------ATACGTCACATTGTTTCAAaataaatgaaggattat
gi|94095                      :                         AAAAAATACCACTAAATAAAAGAT-----------------------TTTAG-TTTT--CTTTGTACTCACGCATA----CTGTCCTTTAACA-ATGATT-TACACT-T-TTTTTTACAATGTTTACC----ATA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94096                      :                         AAAAAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG-TTTT--CATTGTACTCACGCATA----
gi|94097                      :                         AAAAAATACCACTAAATAAATGATATTACTTCACTTGAAACTTGTGTTTT------------------------CA----CT-----TTTACA-ATGTTTATAC-T--T-TTTTTTACAATGTTTACC----ATA-----------GGC-------CT---------------ATACTTCACATT
gi|94098                      :                          AAAAATACCACTACATAAAAGATTATACTTCACTAGAAACTTGTGCTTTAGGTTTT--TTTTGTATGCGCGCATG----CTGTCCCTTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACT----GTA-----------GGT-------AT---------------TTATGTCACCTTGTTTCAA
gi|94099                      :                                                              AAACATGTGTTTTAA-TTTT--CTTTGTACGCGCGCATA----CTGTCCCTTTACA-ATGTTT-TACAA----TTTTTTACAATGTTTACC----GTA-----------AGT-------CT---------------ATACGTCACATTGTTTGAA
gi|94100                      :                                   aaaaatgatcataaagagaaacaatatAAACTTGTGTTTTAG-TTTT--CTTTGTACGCGCGCATA----CTGTCCCTTTACA-ATGTTT-TACAC----TTTTTTACAATGTTTACC----ATAAAAAACAATGTGACGTATAGACC---------------ATACGTCACATTGTTTGAA
gi|94101                      : aaaaatgatcataaagagaaacaatatAAATACCACTAAATAAAAGATATTACTT-ACTAGAAACTTGTGTTTT-G-TTTT---TTTGTATACGCGCATA----CTATCC--TTACATATGTAA-TACAT--T-TTTTTAACAATGTTTACC----ATA-----------GGC-------CTATTCTTAGCATAAAAATATGTCACATTGTTTCAA
gi|94102                      :                                         TAGAAGATATTAATTCACTTGAAACTTGTGTTTTAG-TTTT--CTTTGTACGCACACATA----CTTTTCTGTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACCGATTGTT-----------GGC-------CG---------------ATACGTCGCATTGTTTCAA
gi|94103                      :                                         TAGAAGATATTTCTTCACATGAAACTTGTGTTTTAG-TTTT--CTTTGTACGTACGCATA----CTGTCCTTTTAC------------------------ACAATGTCTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94104                      :                                            AATATATTACTTTACTT--------------AG-TTTT--CTTTGTACGCACGCATA----ATGTCCTTTTACA-ATGTTT-TACAC--TGTTTTTTACAATGTTTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94105                      :                                                       TCAC---AAACTTGTGTTTTAG-TTTT--CTTTGTACGCACGCATA----CTGTCCTTTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACT----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA


blockSeqs                     :                                                            T                G    .                  CATA             T      A     TTT                   GATT   AAAAACAATGT   GTATAGA  ATTCTTAGCATAAAA
blockSeqs                     :                                                            A                .    .                  .                .      .     TT                    .      .             .        ATAG           
blockSeqs                     :                                                            A                .    .                  .                .      .     TT                    .      .             .        .              
blockSeqs                     :                                                            A                .    .                  .                .      .     TG                    .      .             .        .              
blockSeqs                     :                                                            T                .    .                  .                .      .     T                     .      .             .        .              
blockSeqs                     :                                                            T                .    .                  .                .      .     T                     .      .             .        .              
blockSeqs                     :                                                            T                .    .                  .                .      .     T                     .      .             .        .              
blockSeqs                     :                                                            T                .    .                  .                .      .     T                     .      .             .        .              
blockSeqs                     :                                                            A                .    .                  .                .      .     T                     .      .             .        .              
blockSeqs                     :                                                            A                .    .                  .                .      .     T                     .      .             .        .              
blockSeqs                     :                                                            T                .    .                  .                .      .     T                     .      .             .        .              
blockSeqs                     :                                                            T                .    .                  .                .      .     T                     .      .             .        .              
blockSeqs                     :                                                            T                .    .                  .                .      .     T                     .      .             .        .              
blockSeqs                     :                                                            .                .    .                  .                .      .     .                     .      .             .        .              
blockSeqs                     :                                                            .                .    .                  .                .      .     .                     .      .             .        .              
blockSeqs                     :                                                            .                .    .                  .                .      .     .                     .      .             .        .              
blockSeqs                     :                                                                             .    .                  .                .      .     .                                                                  
blockSeqs                     :                                                                             .    .                  .                                                                                                


blockSeqCons                  :                                                                                  **
originalCons                  :                         AAAAAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG-TTTT--CTTTGTACGCGCGCATA----CTGTCCCTTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
finalCons                     :                         AAAAAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG-TTTT--CTTTGTACGCGCGCATA----CTGTCCCTTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA





Alignments
lowQualScore                  :                                                                                                                                   1111                         11111111111            111111111111111                   
lowQualScore                  :                                                            4                2    22                 4444      0      2      2     0000                  5555   11111111111   7777777  999999999999999                   
lowQualScore                  :                                                            .                .    ..                 ....      .      .      .     ....                  ....   ...........   .......  ...............                   
lowQualScore                  :                                                            4                1    99                 5555      9      2      2     2222                  0000   22222222222   6666666  777777777777777                   
consensus                     :                         AAAAAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG-TTTT--CTTTGTACGCGCGCATA----CTGTCCCTTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
Reference ( family-828 )      :                         AAAAAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG-TTTT--CTTTGTACGCGCGCATA----CTGTCCCTTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94087                      :                         AAAAAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG-TTTTTTCTTTGTACGCACGCATA----CTGTCCCTTTACA-ATGTTT-TACAC--T-TTGTTTACAATGTTTACT----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94088                      :                         AAAGAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG-TTTT--CTTTGTACATGTGCATA----CTGTCCCTTTACA-ATGTTT-TACACTTT-TTTTTTACAATGTTTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94089                      :                         AAAAAATACCGCTAAATAAACGATATTACTTCACTAGAAACTTGTATTTTAG-TTTT--CTTTGTACGAGTGCATACATACTGTCCCTTTACA-ATGTTT-TACAC--T-TTTTTTATAATGTTTACC----GTA-----------GGA-------CT---------------ATACATCACATTGTTTCAA
gi|94090                      :                         AAAAAATATCACTAAATAAAATATATTACTTCACTAGAAACGTGTGTTTTAG-TTTT--CTTTGTACTTGCACATG----CTGTCCCTTTACA-ATGTTT-TATAC--T-ATTTTTAAAATGTTTACC----GTA-----------GGT-------CT---------------ATATGTCACATTGTTTCAA
gi|94091                      :                         AAAAAATACCACTAAATAAAAGATATTACTTTACGAGAAATTTGTGTTTTAG-TCTT--CTTTGTACGCACGCATA----CTGTCCATTTATA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGT
gi|94092                      :                         AAAAAATATCACTAAATAAAAGATATTACTTATCTTGAAACTTGTGTTTTAG-TTTT--CTTTGTACACCCCCATA----CTGTCCTTTTACA-ATGTTT-TACGCT-T-TTTTTTACAATGATTACC----GTA-----------GGT-------CT---------------ATATCACACATTGTTTCAA
gi|94093                      :                         AAAAAATACCACTCTATAAAAGATATTACTTCACT--AGACTTGTGTTTTAG-TTTT--CTTTGTACGCGCGCATA----CTGTCCCTTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTA
gi|94094                      :                         AAAAAATACCACTTAAT------------TTCACATGAAACTTGTGTTTTAG-TTTT--CTTTGTACACGCACATA----CTGTCCCTTTACT-ATGTTT-TACAC----TTTTTTACATTGTTTACC----ATA-----------GGT-------CTATAG-----------ATACGTCACATTGTTTCAAaataaatgaaggattat
gi|94095                      :                         AAAAAATACCACTAAATAAAAGAT-----------------------TTTAG-TTTT--CTTTGTACTCACGCATA----CTGTCCTTTAACA-ATGATT-TACACT-T-TTTTTTACAATGTTTACC----ATA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94096                      :                         AAAAAATACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAG-TTTT--CATTGTACTCACGCATA----
gi|94097                      :                         AAAAAATACCACTAAATAAATGATATTACTTCACTTGAAACTTGTGTTTT------------------------CA----CT-----TTTACA-ATGTTTATAC-T--T-TTTTTTACAATGTTTACC----ATA-----------GGC-------CT---------------ATACTTCACATT
gi|94098                      :                          AAAAATACCACTACATAAAAGATTATACTTCACTAGAAACTTGTGCTTTAGGTTTT--TTTTGTATGCGCGCATG----CTGTCCCTTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACT----GTA-----------GGT-------AT---------------TTATGTCACCTTGTTTCAA
gi|94099                      :                                                              AAACATGTGTTTTAA-TTTT--CTTTGTACGCGCGCATA----CTGTCCCTTTACA-ATGTTT-TACAA----TTTTTTACAATGTTTACC----GTA-----------AGT-------CT---------------ATACGTCACATTGTTTGAA
gi|94100                      :                                   aaaaatgatcataaagagaaacaatatAAACTTGTGTTTTAG-TTTT--CTTTGTACGCGCGCATA----CTGTCCCTTTACA-ATGTTT-TACAC----TTTTTTACAATGTTTACC----ATAAAAAACAATGTGACGTATAGACC---------------ATACGTCACATTGTTTGAA
gi|94101                      : aaaaatgatcataaagagaaacaatatAAATACCACTAAATAAAAGATATTACTT-ACTAGAAACTTGTGTTTT-G-TTTT---TTTGTATACGCGCATA----CTATCC--TTACATATGTAA-TACAT--T-TTTTTAACAATGTTTACC----ATA-----------GGC-------CTATTCTTAGCATAAAAATATGTCACATTGTTTCAA
gi|94102                      :                                         TAGAAGATATTAATTCACTTGAAACTTGTGTTTTAG-TTTT--CTTTGTACGCACACATA----CTTTTCTGTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACCGATTGTT-----------GGC-------CG---------------ATACGTCGCATTGTTTCAA
gi|94103                      :                                         TAGAAGATATTTCTTCACATGAAACTTGTGTTTTAG-TTTT--CTTTGTACGTACGCATA----CTGTCCTTTTAC------------------------ACAATGTCTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94104                      :                                            AATATATTACTTTACTT--------------AG-TTTT--CTTTGTACGCACGCATA----ATGTCCTTTTACA-ATGTTT-TACAC--TGTTTTTTACAATGTTTACC----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA
gi|94105                      :                                                       TCAC---AAACTTGTGTTTTAG-TTTT--CTTTGTACGCACGCATA----CTGTCCTTTTACA-ATGTTT-TACAC--T-TTTTTTACAATGTTTACT----GTA-----------GGC-------CT---------------ATACGTCACATTGTTTCAA