lowQualScore : 3333333333 1 6666666666 11111 1 1 5555555555555555555555555 222 11 11 111
lowQualScore : 3 2222222222 2 1 1111111111 5555555 666666 4 2 55555 0 2 0 6 7777777777777777777777777 5 222 11 33 2 66 444
lowQualScore : . .......... . . .......... ....... ...... . . ..... . . . . ......................... . ... .. .. . .. ...
lowQualScore : 2 4444444444 0 1 4444444444 8888888 444444 4 2 66666 5 3 9 0 5555555555555555555555555 6 888 00 88 0 88 777
consensus : GAATGTCGGACGAAGCGTACCACTGCCTTNCCGTACCAC-GA-CN-AAGCGTACCAGTTTCT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATATATATTAATGTATTGTTTG------TTA-A--------------ACTGTTCAAATGTGTATTATGTTAT-TTTTTTTTTAT--CTAA--TGTTCATCTCGTCTAATTTGCATCGATAAGTACTACAATATAGCGAAAATAAAGCGAGAATAATAATAA
Reference ( gi|48604 ) : GAATGTCGGACGAAGCGTACCACTGCCTTACCGTACCAG-GA-CG-AAGCGTACCAGTTTCT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATA-ATATTAATGTATTGTTTG------TTA-A--------------ACTGTTCAAATGTGTATTATGTTA--TTTTTTTTTAT--CTAA--TGTTCATCTCGTCTAATTTGCATCGATAAGTACTGCAATATAGCGAAAATAAAGCGAGAATAATAATAA
gi|48605 : GAATGTCGGACGAAGCGTACCACTGCCTTACCGTACCAG-GA-CG-AAGCGTACCAGTTTCG---------AAGACGAAG-----CG-AC------CACATAT-A-GAT-----TATACAGGGAAAATTTAATA-ATATTAATGTATTGTTTG------TTA-A--------------ACTGTTCAATTGTGTATTATGTTA---TTTTTTTTAT--CTAA--TGTTCATCTTGTCTAATTTGCATCGATAAGTACTACAATATAGCGAAAATAAAGCGAGAATAATAATAA
gi|48607 : GAATGTCGGAC-AAGCGTACCACTGCCTTACCGTATCAG-GA-CG-AAGCGTACCAGTTTCT---------AGGACAAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATA-TTATTAATGTATTATTTA------TTA-A--------------ACTGTTCAAATGTGTATTATGTTA--TTTTTTTTTAT--CTAA--TGTTCATCTTGTCTAATTTGCATCGATAAGTA---CAATATAGCGAAAATAAAGCGAGAATAATAATAA
gi|48606 : GAATGTCGGACGGAGCGTACCACTGCCTTACCATACCAG-GA-CT-AGGCGTACCAGTTTCT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATA-ATATTAATGTATTGTTTG------TTA-A--------------ACTGTTCAAATGTGTATTATGTTATTTTTTTTTTTAT--CTAA--TGTTCATCTTGTCTAAATTGCATCGATAAGTACTACAATGTAGCAAATATAATGCGAGAATAATAATAAtaa
gi|48608 : GAATTGCGGACAAAGCGTACCACTACCTTACCGTACCAG-GA-TG-AAGCGTACCAGTTTCT---------AGGATGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTGATA-ATATTAATGTATTGTTTG-------TA-------------------GTTT--ATATATA-TATATAA--TTTTTTTTTACTGTTAAACTGGTCATTTCATTTA---TGCAT
gi|48609 : GAATGTCAGATGAAGCGTACCACTGCCTTACTGTACTAG-GA-CG-AAGCGTAC------------------------------------------CACATAT-A-GAT-----TATATAAGGAAAATTTAATA-ATATTAATGTATTGTTTGTACTTTTTATATATATATTTTTTTTACTGTTCAAATGTGAAGTATGTTATGTTTTTTTTTAT--CTttaaccaatgaataata
gi|48610 : GAATGCCGGATGAAGCGTACCAGTGCAATAGCATATCAG-GA-CA-TAGTGTATTACTTGAT---------TAGAGAAAA-----CATAA------CATGTAT-ATAATTAATATATATAGTGAAAA-TGAATA-ATGT
gi|48611 : GATTGTAGAATGAAGTGTACCAATGCCTTGGCGTACCAC-TACCC-AAGCATA-CAATTTCTGATGATTTCAGGACGAAG-----ATTAC------CATATGCGA-CATA----CATATAG-----ACTTAGTGTATATT
gi|48612 : TGCTGGACGAAGCGTACCACTGTCTTTCCGTACCACTGC-CT-TTACGTACCA-TTTC----------AGGACGAAG-----CGTAC------CACATAT-A-TAT-----AATATAG
gi|48615 : GGACGAAGCGTACCACTGTCTTTCCGTACCACTGC-CT-TTACGTACC-GTTTC----------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----AATATAG
gi|48616 : GGACGAAACGTACCACTGTCTTACAGTACCACTGC-CT-TTACGTACCA-TTTC----------AGGATGAAG-----CATAC------CACATAA-A-GAT-----TATATAG
gi|48613 : GGACGAAGCGTACCACTGTCTTTCCGTACCAATGC-CT-TTCCGCACCA-TTTC----------AGGACAAAG-----TGTAT------CACATAT-A-GAT-----AATATAG
gi|48614 : GGACGAAGCGTACCACTGTCATTCCGTACCACTGC-CT-TTACGTACCA-TTTC----------AGGACGAAG-----CGTAC------CACATAT-A-TAT-----AATA
gi|48617 : GGACAAAGCCTACCACTGTCTCTCCGTACCACTGC-CT-TTACGTACCA--TTAC---------AGAACGAAG-----CGTAC------CACATAA-A-GAT-----TATAAAG
gi|48618 : GAATGAAGCGTACCAATGCCTTGGCGTACCAC-TACCC-AAGCATA-CAATTTCTGGTGATTTCAGGACGAAG-----ATTAC------CATATGCGA-CATA----CATATAG-----ACTTAGTGTATATTA
gi|48619 : GAATGAAGCGTGCCAATGCCTTGGCGTACCAC-TA-CCCAAGCATAC-AGTTTCTGATGATTTCAGGGCGAAG-----ATTAC------CATATGC-G----------ACATAATGTATACTTAGTATATATT-ATCCA--GTTGG--------A-A--------------GCTCTTAAAATGTG
gi|48620 : GAATGAAGCGTACCAATGCCTTGGCGTACCAC-TACCC-AAGCATA-CAATTTCTTATAATTTCAGGACGAAGATAACCATATGCGACATACATAT-A-GAC-----T---TAGTGTAAATT
gi|48622 : GAATGAAGAGTACCAATGCCTTGGCGTACCAT-TACCC-AAGCATA-CAATTTCTGGTGATTTCAGGATGAAG-----ATTAC--------CATAT-A-GGT-----T
gi|48621 : GAATGAAGCATACAAATGCCTTGGCATACCAT-TA-CCCAGGCATAC-AATTTCTGATGATTTCAGGACGAAG-----ATTAC------CATATA--A-GATATATATATATAG-----ACTTAGTGTATATTA
Alignments
lowQualScore : 22222 1 5555555555 11111 1 666666666666666666666666 222 11 111
lowQualScore : 1 2 11111 7777 5 0 6666666666 55555 666666 4 2 44444 8 1 5 66 1 444444444444444444444444 000 99 11 444 0
lowQualScore : . . ..... .... . . .......... ..... ...... . . ..... . . . .. . ........................ ... .. .. ... .
lowQualScore : 0 1 88888 7777 3 0 5555555555 33333 111111 2 1 77777 8 3 5 44 4 222222222222222222222222 777 22 00 000 8
consensus : GAATGTCGGACGAAGCGTACCACTGCCTTNCCGTACC-AC-GA-CN-AAGCGTACCAGTTTCT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATATATATTAATGTATTGTTTGTTAAACTGTTCAAATGTGTATT------------------------ATGTTA-T-TTTTTTTT--TATCTAA--TGTTCATCTCGTCTA---ATTTGCATCGATAAGTACTACAATATAGCGAAAATAAAGCGAGAATAATAATAA
Reference ( family-826 ) : GAATGTCGGACGAAGCGTACCACTGCCTTNCCGTACC-AC-GA-CN-AAGCGTACCAGTTTCT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATATATATTAATGTATTGTTTGTTAAACTGTTCAAATGTGTATT------------------------ATGTTA-T-TTTTTTTT--TATCTAA--TGTTCATCTCGTCTA---ATTTGCATCGATAAGTACTACAATATAGCGAAAATAAAGCGAGAATAATAATAA
gi|48604 : GAATGTCGGACGAAGCGTACCACTGCCTTACCGTACC-AG-GA-CG-AAGCGTACCAGTTTCT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATA-ATATTAATGTATTGTTTGTTAAACTGTTCAAATGTGTATT------------------------ATGTTA---TTTTTTTT--TATCTAA--TGTTCATCTCGTCTA---ATTTGCATCGATAAGTACTGCAATATAGCGAAAATAAAGCGAGAATAATAATAA
gi|48605 : GAATGTCGGACGAAGCGTACCACTGCCTTACCGTACC-AG-GA-CG-AAGCGTACCAGTTTCG---------AAGACGAAG-----CG-AC------CACATAT-A-GAT-----TATACAGGGAAAATTTAATA-ATATTAATGTATTGTTTGTTAAACTGTTCAATTGTGTATT------------------------ATGTTA-T-TTT--TTT--TATCTAA--TGTTCATCTTGTCTA---ATTTGCATCGATAAGTACTACAATATAGCGAAAATAAAGCGAGAATAATAATAA
gi|48606 : GAATGTCGGACGGAGCGTACCACTGCCTTACCATACC-AG-GA-CT-AGGCGTACCAGTTTCT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATA-ATATTAATGTATTGTTTGTTAAACTGTTCAAATGTGTATT------------------------ATGTTATT-TTTTTTTT--TATCTAA--TGTTCATCTTGTCTA---AATTGCATCGATAAGTACTACAATGTAGCAAATATAATGCGAGAATAATAATAA
gi|48607 : GAATGTCGGAC-AAGCGTACCACTGCCTTACCGTATC-AG-GA-CG-AAGCGTACCAGTTTCT---------AGGACAAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATAT-TATTAATGTATTATTTATTAAACTGTTCAAATGTGTATT------------------------ATGTTA---TTTTTTTT--TATCTAA--TGTTCATCTTGTCTA---ATTTGCATCGATAAG---TACAATATAGCGAAAATAAAGCGAGAATAATAATAA
gi|48608 : GAATTGCGGACAAAGCGTACCACTACCTTACCGTACC-AG-GA-TG-AAGCGTACCAGTTTCT---------AGGATGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTGATA-ATATTAATGTATTGTTTG-TA----GTTT--ATATATA-T------------------------ATATAA-T-TTTTTTTTACTGT-TAAACTGGTCATTTCATTTATGCATTTA-ACCAATGAATAATAtaa
gi|48609 : GAATGTCAGATGAAGCGTACCACTGCCTTACTGTAC--------------------------T---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAAGGAAAATTTAATA-ATATTAATGTATTGTTTGT---ACTTTTTATATATATATTTTTTTTACTGTTCAAATGTGAAGTATGTTA-TGTTTTTTTT--TATCT
gi|48610 : GAATGCCGGATGAAGCGTACCAGTGCAATAGCATATC-AG-GA-CA-TAGTGTATTACTTGAT---------TAGAGAAAA-----CATAA------CATGTAT-ATAATTAATATATATAGTGAAAAT
gi|48611 : GATTGTAGAATGAAGTGTACCAATGCCTTGGCGTACC-AC-TACCC-AAGCATA-CAATTTCTGATGATTTCAGGACGAAG-----ATTAC------CATATGCGA-CATA----CATATAG-----ACTTAGTGTATATTgaataatgt
gi|48612 : TGCTGGACGAAGCGTACCACTGTCTTTCCGTACC-ACTGC-CT-TTACGTACCA-TTTC----------AGGACGAAG-----CGTAC------CACATAT-A-TAT-----AATATAG
gi|48613 : GGACGAAGCGTACCACTGTCTTTCCGTACCAAT-GC-CT-TTCCGCACCA-TTTC----------AGGACAAAG-----TGTAT------CACATAT-A-GAT-----AATATAG
gi|48614 : GGACGAAGCGTACCACTGTCATTCCGTACC-ACTGC-CT-TTACGTACCA-TTTC----------AGGACGAAG-----CGTAC------CACATAT-A-TAT-----AATA
gi|48615 : GGACGAAGCGTACCACTGTCTTTCCGTACC-ACTGC-CT-TTACGTACC-GTTTC----------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----AATATAG
gi|48616 : GGACGAAACGTACCACTGTCTTACAGTACC-ACTGC-CT-TTACGTACCA-TTTC----------AGGATGAAG-----CATAC------CACATAA-A-GAT-----TATATAG
gi|48617 : GGACAAAGCCTACCACTGTCTCTCCGTACC-ACTGC-CT-TTACGTACCA--TTAC---------AGAACGAAG-----CGTAC------CACATAA-A-GAT-----TATAAAG
gi|48618 : GAATGAAGCGTACCAATGCCTTGGCGTACC-AC-TACCC-AAGCATA-CAATTTCTGGTGATTTCAGGACGAAG-----ATTAC------CATATGCGA-CATA----CATATAG-----ACTTAGTGTATATTA
gi|48619 : GAATGAAGCGTGCCAATGCCTTGGCGTACC-AC-TACCC-AAGCATA-CAGTTTCTGATGATTTCAGGGCGAAG-----ATTAC------CATATGC-G----------ACATAATGTATACTTAGTATATATT-ATCCA--GTTGG--AAGCTCTTAAAATGTG
gi|48620 : GAATGAAGCGTACCAATGCCTTGGCGTACC-AC-TACCC-AAGCATA-CAATTTCTTATAATTTCAGGACGAAGATAACCATATGCGACATACATAT-A-GAC-----T---TAGTGTAAATT
gi|48621 : GAATGAAGCATACAAATGCCTTGGCATACC-AT-TA-CCCAGGCATAC-AATTTCTGATGATTTCAGGACGAAG-----ATTAC------CATATA--A-GATATATATATATAG-----ACTTAGTGTATATTA
gi|48622 : GAATGAAGAGTACCAATGCCTTGGCGTACC-AT-TACCC-AAGCATA-CAATTTCTGGTGATTTCAGGATGAAG-----ATTAC--------CATAT-A-GGT-----T
Alignments
lowQualScore : 22222 1 5555555555 11111 1 666666666666666666666666 222 11 111
lowQualScore : 1 2 11111 7777 5 0 6666666666 55555 666666 4 2 44444 8 1 5 66 1 444444444444444444444444 000 99 11 444 0
lowQualScore : . . ..... .... . . .......... ..... ...... . . ..... . . . .. . ........................ ... .. .. ... .
lowQualScore : 0 1 88888 7777 3 0 5555555555 33333 111111 2 1 77777 8 3 5 44 4 222222222222222222222222 777 22 00 000 8
consensus : GAATGTCGGACGAAGCGTACCACTGCCTTNCCGTACC-AC-GA-CN-AAGCGTACCAGTTTCT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATATATATTAATGTATTGTTTGTTAAACTGTTCAAATGTGTATT------------------------ATGTTA-T-TTTTTTTT--TATCTAA--TGTTCATCTCGTCTA---ATTTGCATCGATAAGTACTACAATATAGCGAAAATAAAGCGAGAATAATAATAA
Reference ( family-826 ) : GAATGTCGGACGAAGCGTACCACTGCCTTNCCGTACC-AC-GA-CN-AAGCGTACCAGTTTCT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATATATATTAATGTATTGTTTGTTAAACTGTTCAAATGTGTATT------------------------ATGTTA-T-TTTTTTTT--TATCTAA--TGTTCATCTCGTCTA---ATTTGCATCGATAAGTACTACAATATAGCGAAAATAAAGCGAGAATAATAATAA
gi|48604 : GAATGTCGGACGAAGCGTACCACTGCCTTACCGTACC-AG-GA-CG-AAGCGTACCAGTTTCT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATA-ATATTAATGTATTGTTTGTTAAACTGTTCAAATGTGTATT------------------------ATGTTA---TTTTTTTT--TATCTAA--TGTTCATCTCGTCTA---ATTTGCATCGATAAGTACTGCAATATAGCGAAAATAAAGCGAGAATAATAATAA
gi|48605 : GAATGTCGGACGAAGCGTACCACTGCCTTACCGTACC-AG-GA-CG-AAGCGTACCAGTTTCG---------AAGACGAAG-----CG-AC------CACATAT-A-GAT-----TATACAGGGAAAATTTAATA-ATATTAATGTATTGTTTGTTAAACTGTTCAATTGTGTATT------------------------ATGTTA-T-TTT--TTT--TATCTAA--TGTTCATCTTGTCTA---ATTTGCATCGATAAGTACTACAATATAGCGAAAATAAAGCGAGAATAATAATAA
gi|48606 : GAATGTCGGACGGAGCGTACCACTGCCTTACCATACC-AG-GA-CT-AGGCGTACCAGTTTCT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATA-ATATTAATGTATTGTTTGTTAAACTGTTCAAATGTGTATT------------------------ATGTTATT-TTTTTTTT--TATCTAA--TGTTCATCTTGTCTA---AATTGCATCGATAAGTACTACAATGTAGCAAATATAATGCGAGAATAATAATAA
gi|48607 : GAATGTCGGAC-AAGCGTACCACTGCCTTACCGTATC-AG-GA-CG-AAGCGTACCAGTTTCT---------AGGACAAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATAT-TATTAATGTATTATTTATTAAACTGTTCAAATGTGTATT------------------------ATGTTA---TTTTTTTT--TATCTAA--TGTTCATCTTGTCTA---ATTTGCATCGATAAG---TACAATATAGCGAAAATAAAGCGAGAATAATAATAA
gi|48608 : GAATTGCGGACAAAGCGTACCACTACCTTACCGTACC-AG-GA-TG-AAGCGTACCAGTTTCT---------AGGATGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTGATA-ATATTAATGTATTGTTTG-TA----GTTT--ATATATA-T------------------------ATATAA-T-TTTTTTTTACTGT-TAAACTGGTCATTTCATTTATGCATTTA-ACCAATGAATAATAtaa
gi|48609 : GAATGTCAGATGAAGCGTACCACTGCCTTACTGTAC--------------------------T---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAAGGAAAATTTAATA-ATATTAATGTATTGTTTGT---ACTTTTTATATATATATTTTTTTTACTGTTCAAATGTGAAGTATGTTA-TGTTTTTTTT--TATCT
gi|48610 : GAATGCCGGATGAAGCGTACCAGTGCAATAGCATATC-AG-GA-CA-TAGTGTATTACTTGAT---------TAGAGAAAA-----CATAA------CATGTAT-ATAATTAATATATATAGTGAAAAT
gi|48611 : GATTGTAGAATGAAGTGTACCAATGCCTTGGCGTACC-AC-TACCC-AAGCATA-CAATTTCTGATGATTTCAGGACGAAG-----ATTAC------CATATGCGA-CATA----CATATAG-----ACTTAGTGTATATTgaataatgt
gi|48612 : TGCTGGACGAAGCGTACCACTGTCTTTCCGTACC-ACTGC-CT-TTACGTACCA-TTTC----------AGGACGAAG-----CGTAC------CACATAT-A-TAT-----AATATAG
gi|48613 : GGACGAAGCGTACCACTGTCTTTCCGTACCAAT-GC-CT-TTCCGCACCA-TTTC----------AGGACAAAG-----TGTAT------CACATAT-A-GAT-----AATATAG
gi|48614 : GGACGAAGCGTACCACTGTCATTCCGTACC-ACTGC-CT-TTACGTACCA-TTTC----------AGGACGAAG-----CGTAC------CACATAT-A-TAT-----AATA
gi|48615 : GGACGAAGCGTACCACTGTCTTTCCGTACC-ACTGC-CT-TTACGTACC-GTTTC----------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----AATATAG
gi|48616 : GGACGAAACGTACCACTGTCTTACAGTACC-ACTGC-CT-TTACGTACCA-TTTC----------AGGATGAAG-----CATAC------CACATAA-A-GAT-----TATATAG
gi|48617 : GGACAAAGCCTACCACTGTCTCTCCGTACC-ACTGC-CT-TTACGTACCA--TTAC---------AGAACGAAG-----CGTAC------CACATAA-A-GAT-----TATAAAG
gi|48618 : GAATGAAGCGTACCAATGCCTTGGCGTACC-AC-TACCC-AAGCATA-CAATTTCTGGTGATTTCAGGACGAAG-----ATTAC------CATATGCGA-CATA----CATATAG-----ACTTAGTGTATATTA
gi|48619 : GAATGAAGCGTGCCAATGCCTTGGCGTACC-AC-TACCC-AAGCATA-CAGTTTCTGATGATTTCAGGGCGAAG-----ATTAC------CATATGC-G----------ACATAATGTATACTTAGTATATATT-ATCCA--GTTGG--AAGCTCTTAAAATGTG
gi|48620 : GAATGAAGCGTACCAATGCCTTGGCGTACC-AC-TACCC-AAGCATA-CAATTTCTTATAATTTCAGGACGAAGATAACCATATGCGACATACATAT-A-GAC-----T---TAGTGTAAATT
gi|48621 : GAATGAAGCATACAAATGCCTTGGCATACC-AT-TA-CCCAGGCATAC-AATTTCTGATGATTTCAGGACGAAG-----ATTAC------CATATA--A-GATATATATATATAG-----ACTTAGTGTATATTA
gi|48622 : GAATGAAGAGTACCAATGCCTTGGCGTACC-AT-TACCC-AAGCATA-CAATTTCTGGTGATTTCAGGATGAAG-----ATTAC--------CATAT-A-GGT-----T
blockSeqs : A A CTAC CCAG C G TGATGATTTC ATAAC GCGACA G T TAATA G A T TT A TTTTTTACTGTTCAAATGTGAAGT TT AC AC TGC
blockSeqs : A . CTGC GAA C G TGGTGATTTC . . G . ATATA G A T TT A . TG . . .
blockSeqs : A . CTGC TAG C G TGATGATTTC . . . . A G A T TT A . T . . .
blockSeqs : A . CTGC GAA C G TTATAATTTC . . . . A G A T T A . T . . .
blockSeqs : A . CTGC GAA T C TGATGATTTC . . . . . G A T T . . . .
blockSeqs : A . CTGC ATA C A TGGTGATTTC . . . . . T A . . .
blockSeqs : G . CTAC CAA C G G . . . . . T T .
blockSeqs : T . CTAC TTT C A T . . . . . T T .
blockSeqs : T . CTAC TTT C G T . . . . . . . .
blockSeqs : T . TTAC TTT C A T . . . . . . .
blockSeqs : T . GGA TTT C A T . . . . . . .
blockSeqs : A . GGA TTT C A T . . . . .
blockSeqs : T . GGA TTT . . C . . . . .
blockSeqs : G . GGA CAA . . . . . . . .
blockSeqs : G . GGA CAA . . . . . . . .
blockSeqs : G . TGC CAA . . . . . . . .
blockSeqs : G . TTA CAA . . . . . . . .
blockSeqs : G . . . . . . . . . . .
blockSeqCons : CTGC* T**
originalCons : GAATGTCGGACGAAGCGTACCACTGCCTTNCCGTACC-AC-GA-CN-AAGCGTACCAGTTTCT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATATATATTAATGTATTGTTTGTTAAACTGTTCAAATGTGTATT------------------------ATGTTA-T-TTTTTTTT--TATCTAA--TGTTCATCTCGTCTA---ATTTGCATCGATAAGTACTACAATATAGCGAAAATAAAGCGAGAATAATAATAA
finalCons : GAATGTCGGACGAAGCGTACCACTGCCTTNCCGTACC-ACTGC-CN-AAGCGTACCAGTTTCT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATATATATTAATGTATTGTTTGTTAAACTGTTCAAATGTGTATT------------------------ATGTTAT--TTTTTTTT--TATCTAA--TGTTCATCTCGTCTA---ATTTGCATCGATAAGTACTACAATATAGCGAAAATAAAGCGAGAATAATAATAA
Alignments
lowQualScore : 1 5555555555 11111 1 666666666666666666666666 11 11 111
lowQualScore : 0 22 77 333 6 0 6666666666 55555 666666 4 2 44444 8 1 5 66 1 444444444444444444444444 6 44 99 11 444 0
lowQualScore : . .. .. ... . . .......... ..... ...... . . ..... . . . .. . ........................ . .. .. .. ... .
lowQualScore : 5 33 44 777 6 0 5555555555 33333 111111 2 1 77777 8 3 5 44 4 222222222222222222222222 7 00 22 00 000 8
consensus : GAATGTCGGACGAAGCGTACCACTGCCTTNCCGTACCACTGCCNAAGCGTACCAGTTTCT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATATATATTAATGTATTGTTTGTTAAACTGTTCAAATGTGTATT------------------------ATGTTAT-TTT-TTTTT--TATCTAA--TGTTCATCTCGTCTA---ATTTGCATCGATAAGTACTACAATATAGCGAAAATAAAGCGAGAATAATAATAA
Reference ( family-826 ) : GAATGTCGGACGAAGCGTACCACTGCCTTNCCGTACCACTGCCNAAGCGTACCAGTTTCT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATATATATTAATGTATTGTTTGTTAAACTGTTCAAATGTGTATT------------------------ATGTTAT-TTT-TTTTT--TATCTAA--TGTTCATCTCGTCTA---ATTTGCATCGATAAGTACTACAATATAGCGAAAATAAAGCGAGAATAATAATAA
gi|48604 : GAATGTCGGACGAAGCGTACCACTGCCTTACCGTACCAG-GACGAAGCGTACCAGTTTCT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATA-ATATTAATGTATTGTTTGTTAAACTGTTCAAATGTGTATT------------------------ATGTTAT-TTT--TTTT--TATCTAA--TGTTCATCTCGTCTA---ATTTGCATCGATAAGTACTGCAATATAGCGAAAATAAAGCGAGAATAATAATAA
gi|48605 : GAATGTCGGACGAAGCGTACCACTGCCTTACCGTACCAG-GACGAAGCGTACCAGTTTCG---------AAGACGAAG-----CG-AC------CACATAT-A-GAT-----TATACAGGGAAAATTTAATA-ATATTAATGTATTGTTTGTTAAACTGTTCAATTGTGTATT------------------------ATGTTAT-TTT---TTT--TATCTAA--TGTTCATCTTGTCTA---ATTTGCATCGATAAGTACTACAATATAGCGAAAATAAAGCGAGAATAATAATAA
gi|48606 : GAATGTCGGACGGAGCGTACCACTGCCTTACCATACCAG-GACTAGGCGTACCAGTTTCT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATA-ATATTAATGTATTGTTTGTTAAACTGTTCAAATGTGTATT------------------------ATGTTAT-TTTTTTTTT--TATCTAA--TGTTCATCTTGTCTA---AATTGCATCGATAAGTACTACAATGTAGCAAATATAATGCGAGAATAATAATAA
gi|48607 : GAATGTCGGAC-AAGCGTACCACTGCCTTACCGTATCAG-GACGAAGCGTACCAGTTTCT---------AGGACAAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTAATAT-TATTAATGTATTATTTATTAAACTGTTCAAATGTGTATT------------------------ATGTTA--TTT-TTTTT--TATCTAA--TGTTCATCTTGTCTA---ATTTGCATCGATAAG---TACAATATAGCGAAAATAAAGCGAGAATAATAATAA
gi|48608 : GAATTGCGGACAAAGCGTACCACTACCTTACCGTACCAG-GATGAAGCGTACCAGTTTCT---------AGGATGAAG-----CGTAC------CACATAT-A-GAT-----TATATAGGGAAAATTTGATA-ATATTAATGTATTGTTTG-TA----GTTT--ATATATA-T------------------------ATATAAT-TTT-TTTTTACTGT-TAAACTGGTCATTTCATTTATGCATTTA-ACCAATGAATAATAtaa
gi|48609 : GAATGTCAGATGAAGCGTA----------------CCACTGCCTTACTGTA-------CT---------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----TATATAAGGAAAATTTAATA-ATATTAATGTATTGTTTGT---ACTTTTTATATATATATTTTTTTTACTGTTCAAATGTGAAGTATGTTATGTTT-TTTTT--TATCT
gi|48610 : GAATGCCGGATGAAGCGTACCAGTGCAATAGCATATCA-GGACATAGTGTATTACTTGAT---------TAGAGAAAA-----CATAA------CATGTAT-ATAATTAATATATATAGTGAAAAT
gi|48611 : GATTGTAGAATGAAGTGTACCAATGCCTTGGCGTACCACTACCCAAGCATA-CAATTTCTGATGATTTCAGGACGAAG-----ATTAC------CATATGCGA-CATA----CATATAG-----ACTTAGTGTATATTgaataatgt
gi|48612 : TGCTGGACGAAGCGTACCACTGTCTTTCCGTACCACTGCCTTTACGTACCA-TTTC----------AGGACGAAG-----CGTAC------CACATAT-A-TAT-----AATATAG
gi|48613 : GGACGAAGCGTACCACTGTCTTTCCGTACCAATGCCTTTCCGCACCA-TTTC----------AGGACAAAG-----TGTAT------CACATAT-A-GAT-----AATATAG
gi|48614 : GGACGAAGCGTACCACTGTCATTCCGTACCACTGCCTTTACGTACCA-TTTC----------AGGACGAAG-----CGTAC------CACATAT-A-TAT-----AATA
gi|48615 : GGACGAAGCGTACCACTGTCTTTCCGTACCACTGCCTTTACGTACC-GTTTC----------AGGACGAAG-----CGTAC------CACATAT-A-GAT-----AATATAG
gi|48616 : GGACGAAACGTACCACTGTCTTACAGTACCACTGCCTTTACGTACCA-TTTC----------AGGATGAAG-----CATAC------CACATAA-A-GAT-----TATATAG
gi|48617 : GGACAAAGCCTACCACTGTCTCTCCGTACCACTGCCTTTACGTACCA--TTAC---------AGAACGAAG-----CGTAC------CACATAA-A-GAT-----TATAAAG
gi|48618 : GAATGAAGCGTACCAATGCCTTGGCGTACCACTACCCAAGCATA-CAATTTCTGGTGATTTCAGGACGAAG-----ATTAC------CATATGCGA-CATA----CATATAG-----ACTTAGTGTATATTA
gi|48619 : GAATGAAGCGTGCCAATGCCTTGGCGTACCACTACCCAAGCATA-CAGTTTCTGATGATTTCAGGGCGAAG-----ATTAC------CATATGC-G----------ACATAATGTATACTTAGTATATATT-ATCCA--GTTGG--AAGCTCTTAAAATGTG
gi|48620 : GAATGAAGCGTACCAATGCCTTGGCGTACCACTACCCAAGCATA-CAATTTCTTATAATTTCAGGACGAAGATAACCATATGCGACATACATAT-A-GAC-----T---TAGTGTAAATT
gi|48621 : GAATGAAGCATACAAATGCCTTGGCATACCATTACCCAGGCATAC-AATTTCTGATGATTTCAGGACGAAG-----ATTAC------CATATA--A-GATATATATATATAG-----ACTTAGTGTATATTA
gi|48622 : GAATGAAGAGTACCAATGCCTTGGCGTACCATTACCCAAGCATA-CAATTTCTGGTGATTTCAGGATGAAG-----ATTAC--------CATAT-A-GGT-----T