lowQualScore : 1 111111 1 11111111111111111 1111
lowQualScore : 2 1 0 0 0 5 4 0 0 7 66 4 3 0 2 333 222222 2 2 2 2 2 1 3 88888888888888888 4 999999 2 3 2222 0 33 4 66 6
lowQualScore : . . . . . . . . . . .. . . . . ... ...... . . . . . . . ................. . ...... . . .... . .. . .. .
lowQualScore : 7 7 2 1 2 0 2 8 3 5 11 8 6 1 0 555 555555 5 1 4 2 4 0 5 77777777777777777 7 333333 4 6 0000 1 22 7 22 0
consensus : AAA-CCAGACAAAATTAAGC-GNAAAACAATTATACAAAA-TATTGAAAACGGNGGTNTGAAAATGATAGATA--TAGA----ACTNTTTATAAAT-TCAATTAAAG-CAAGTTGGGTTAAANG----A------------TTAA-CAGAT-G-T-AA-ACAATAAN---GGCGAAT--GG-AAGN-ATATATACATG
Reference ( gi|21272 ) : AAA-CCAGACAAAATTAAGC-GAAAAACAATTATTCAAAA-TATTGAAAACGGTGGTATGAAGATGATAGATA--TAGA----GCTTTTTATACAT-TCAATTAAGG-CAAGTTGGGTTAAACG----A------------TTAA-CAGAT-G-T-AA-ACAATAAT---GGCGAAT--GG-AAGT-ATACATACATG
gi|21273 : AAA-CCAGACAAAATTAAGC-GAAAAACAATTATTCAAAA-TATTGAAAACGGTGGTATGAAGATGATATATA--TAGA----GCTTTTTATACAT-TCAATTAAGG-CAAGTTGGGTTAAACG----A------------TTAA-CAGAT-G-T-AA-ACAATAAT---GGCGAAT--GG-AAGT-ATATATACATG
gi|21275 : AAA-CCAGACAAAATTAAGC-GTAAAACAATTATTCAAAA-TACTGAAAACGGTGGTATGAAGTTGACAG--A--TAGA----GCTTTTTATACAT-TCAATCAAGG-CAAGTTTGGTTAAGCG----A------------TTAA-CAGAT-G-TAAA-ACAATAAT---GGCGAAT--GG-AAGT-ATATATACATG
gi|21274 : AAA-CCAGATAAAATAAAGC-GTAAAACTATTATACAAAA-TATTGAAAACGGTGGATTGAAAATGATAGATA--TAGA----ACTTTTTATAAAT-TCAATAAAAG-CAAGTTGGGTTAAACG----A------------CTAA-CAGAT-G-T-AC-ATAATAAT---GGCGAAT--GG-AAGT-ATATATACA
gi|21276 : AAA-CCAGACAAAGTTAAAT-GTAAAACTATTATACAAAA-TATTGAAAACGGTGGTATGAAGATGATAGATA--TAGATAGAACTTTTTATAAAT-TCAATTAAAG-CAAGTTGGGCTAAACG----A------------TTAA-CAGAT-A-T-AA-ACAATAAA---GGCGCAT--GG-AAGA-CTATTTACATG
gi|21277 : AAA-CAAGACAAAGTAAAGC-GTAAACCTATTAT-AAAAA-TATTGAAAACGATGGTATGAAGATGATAGATA--TATA----ACGTTTGATACAT-TCAATAAAAA-CAAGTTGGGTTAAATG----A------------CTAA-CAGAT-G-T-AA-ACAATAAT---GACGAAT--GG-AAGA-ATATATACATG
gi|21278 : AAA-CCAGATCAAATTAAGC-GTAAA-CTATAATACAAAA-TATTTAAC-CGGTAGTATGAAAAAGATAGGTA--TAGA----ACTTTT-ATCAAT-TCAATAAAAG-CAAATTGGGTTAAAAG----A------------TTAA-CAGAT-G-A-AA-ACAATAAT---GGCGAAT--GG-AATA-ATATATACATG
gi|21279 : AAA-CCAGACAAAA-TAAGTAGAAAAACAATTATACAAAA-TAACGAAAATGGGGGCTTAAAAATGATAGATC--TGAA----TATGTTTATTAAG-TCAATTAAAG-CAGGTTGGGTGAAAAGAATTA------------TCAACCAGA--G-T-AATACA--------GGTGATTCAGG-AAGC-ATATATACATG
gi|21282 : AAA-CCGGATAAAATTAATA-GAAAAACAATTATACAAAACTA-CGAAAATGGGGGTTTAAAAATGATAGATC--TGCA----ATTATTTATAAAT-TCGATTAAAG-CCGGGTGGGTCAAACGT---A------------TT-A-TAAAT-GAT-CA-A-AATAAA---GGGGACT--TG-AAAC-ACATATAC
gi|21281 : AAA-TCTGATAAAATTAGTC-GAAAAACAATAATACAGGA-TGATGAAAACGGGGGCCTAAAAATGATTGATT--TAAA----CATGTTTATAAAA-GCAATTAAAG-CAGGATGGGTCAAAAG----A------------ATAA-TCGATAA-T-AA-A-AATGAG---GGTGATT--GG-AAAC-ATATATACA
gi|21280 : AAA-CCAGACAAAA-TAAGTAGAAAGACAATTATACAAAA-TTACGAAAATGGGGGCTTAAAAATAATAGATC--TGAA----TATGTTTATTAAG-TCAATTAAAG-CAGGTTGGGTGAAAAGAATTA------------TCAATCAGA--G-T----ACTACA-----GGTGATT--GG-AAGC-ATATATACA
gi|21284 : AAA-CCTGATAAAATAAAAA-GGACAACACTAACTCAAGACTAT-GAAAATGGAGGTCTAAAAATGATTGATA--TTGA----AATGTTCATAAAC-TCTCTTAAAT-CAAGTTGGATAAAAAG----A------------TTAC-TTGAT------A-ACAGTAATTCCGGTCAAT--GGAAAGTCATATAT
gi|21283 : AAA-CCTGATAAAATAAAAA-GGACAACACTAACTCAAGACTAT-GAAAATGGAGGTCTAAAAATGATTGATA--TTGA----AATGTTCATAAAC-TCTCTTAAAT-CAAGTTGGATAAAAAG----A------------TTAC-TTGAT------A-ACAGTAATTCCGGTCAAT--GGAAAGTCATATAT
gi|21285 : AAATCCTGAAAAATTTAAAC-GTAAAACAATAATTCAAAA-TTTTGAAAACGGTGCTATCAAAATGATTGATATTTATA----AATTTCT-TAAAT-C--ATTAAAATCAAGCTGGAT
gi|21286 : AAA-CTGGATAAAATCAATA-GAAAAACAATTATATAA-------GAAAATGGGGGATTAAAAATGAAAGATC--TGCA----GTTATTTATAAAA-TCGATT--GG------TGGGTCAAACGT---A------------CTAT-CA-AT-GAT-CA-A-AATAAA---GGGTACT--GG-GAAT-ACATATAC
gi|21287 : AAA-CCTGATACAATTTGTC-GAAAAACAATAGTACAGGA-TTAAGGAAATGG-GGGACTAAAATGATTGATT--TAAA----CATGTTTATA-ATAGCAATAAGGA-CAGAACGGGTCAAAAG----A------------ATAA-TCGATAA-T-GA-A-AATGAA---GGTGATT--GG-AAAC-ATATATACAT
gi|21288 : AAATAAAGC-GTAAAACTAATATACAAAA-TATTGAAAATCGTGGTATGAAACTGACAGATA--TAGA----ACTTTTTATAAAT-TCAATAAAAG-CAAGTTGGGTTAAAAG----A------------CTAA-CAGAT-G-A-AA-ATAATAAT---GAAGAAT--GG-AAGT-ATATAAACA
gi|21289 : --TAGA----ACTTTCTATAAAT-TCAATTAAAG-CAAGTTGGGTTAAACA----AACGCACCAAACATCAA-CAGAT-G-T-AA-ACAATAAA---GGCGAAT--GG-AAGA-ATATATACCTG
gi|21290 : ------------TTAA-CAGAT-G-T-TA-ACAATAAC---GGCGAAT--GG-AAGT-ATATATACATG
Alignments
lowQualScore : 11111111111111111 111111
lowQualScore : 2 1 4 1 0 0 7 44 1 1 1 33 22 4444 8 3 2 0 1 44444444444444444 2 000000 5 8888 33 777
lowQualScore : . . . . . . . .. . . . .. .. .... . . . . . ................. . ...... . .... .. ...
lowQualScore : 5 0 7 0 2 2 1 66 0 0 0 11 11 7777 9 2 2 4 0 44444444444444444 2 999999 2 8888 11 111
consensus : AAA-CCAGACAAAATTAAGC-GNAAAACAATTATACAAAA-TATTGAAAACGGNGGTNTGAAAATGATAGATA--TAGA----AC-TNTTTATAAATTCAATTAAAG-CAAGTTGGGTTAAACG----A------------TTAA-CAGAT-G-T-AAACAATAA---NGGCGAAT--GGAAG--CATATATACATG
Reference ( family-823 ) : AAA-CCAGACAAAATTAAGC-GNAAAACAATTATACAAAA-TATTGAAAACGGNGGTNTGAAAATGATAGATA--TAGA----AC-TNTTTATAAATTCAATTAAAG-CAAGTTGGGTTAAANG----A------------TTAA-CAGAT-G-T-AAACAATAA---NGGCGAAT--GGAAG--NATATATACATG
gi|21272 : AAA-CCAGACAAAATTAAGC-GAAAAACAATTATTCAAAA-TATTGAAAACGGTGGTATGAAGATGATAGATA--TAGA----GC-TTTTTATACATTCAATTAAGG-CAAGTTGGGTTAAACG----A------------TTAA-CAGAT-G-T-AAACAATAA---TGGCGAAT--GGAAG--TATACATACATG
gi|21273 : AAA-CCAGACAAAATTAAGC-GAAAAACAATTATTCAAAA-TATTGAAAACGGTGGTATGAAGATGATATATA--TAGA----GC-TTTTTATACATTCAATTAAGG-CAAGTTGGGTTAAACG----A------------TTAA-CAGAT-G-T-AAACAATAA---TGGCGAAT--GGAAG--TATATATACATG
gi|21274 : AAA-CCAGATAAAATAAAGC-GTAAAACTATTATACAAAA-TATTGAAAACGGTGGATTGAAAATGATAGATA--TAGA----AC-TTTTTATAAATTCAATAAAAG-CAAGTTGGGTTAAACG----A------------CTAA-CAGAT-G-T-ACATAATAA---TGGCGAAT--GGAAG--TATATATACA
gi|21275 : AAA-CCAGACAAAATTAAGC-GTAAAACAATTATTCAAAA-TACTGAAAACGGTGGTATGAAGTTGACAG--A--TAGA----GC-TTTTTATACATTCAATCAAGG-CAAGTTTGGTTAAGCG----A------------TTAA-CAGAT-G-TAAAACAATAA---TGGCGAAT--GGAAG--TATATATACATG
gi|21276 : AAA-CCAGACAAAGTTAAAT-GTAAAACTATTATACAAAA-TATTGAAAACGGTGGTATGAAGATGATAGATA--TAGATAGAAC-TTTTTATAAATTCAATTAAAG-CAAGTTGGGCTAAACG----A------------TTAA-CAGAT-A-T-AAACAATAA---AGGCGCAT--GGAAG--ACTATTTACATG
gi|21277 : AAA-CAAGACAAAGTAAAGC-GTAAACCTATTATA-AAAA-TATTGAAAACGATGGTATGAAGATGATAGATA--TATA----AC-GTTTGATACATTCAATAAAAA-CAAGTTGGGTTAAATG----A------------CTAA-CAGAT-G-T-AAACAATAA---TGACGAAT--GGAAG--AATATATACATG
gi|21278 : AAA-CCAGATCAAATTAAGC-GTAAA-CTATAATACAAAA-TATTTAAC-CGGTAGTATGAAAAAGATAGGTA--TAGA----AC-T-TTTATCAATTCAATAAAAG-CAAATTGGGTTAAAAG----A------------TTAA-CAGAT-G-A-AAACAATAA---TGGCGAAT--GGAAT--AATATATACATG
gi|21279 : AAA-CCAGACAAAA-TAAGTAGAAAAACAATTATACAAAA-TAACGAAAATGGGGGCTTAAAAATGATAGATC--T-GA----ATATGTTTATTAAGTCAATTAAAG-CAGGTTGGGTGAAAAGAATTA------------TCAACCAGA--G-T-----AATAC---AGGTGATTCAGGAAG--CATATATACATG
gi|21280 : AAA-CCAGACAAAA-TAAGTAGAAAGACAATTATACAAAA-TTACGAAAATGGGGGCTTAAAAATAATAGATC--T-GA----ATATGTTTATTAAGTCAATTAAAG-CAGGTTGGGTGAAAAGA---A------------TTAT-CA-AT-C-A-GAGTACTAC---AGGTGATT--GGAAG--CATATATACA
gi|21281 : AAA-TCTGATAAAATTAGTC-GAAAAACAATAATACAGGA-TGATGAAAACGGGGGCCTAAAAATGATTGATT--TA-A----ACATGTTTATAAAAGCAATTAAAG-CAGGATGGGTCAAAAG----A------------ATAA-TCGATAA-T-AAA-AATGA---GGGTGATT--GGAAA--CATATATACA
gi|21282 : AAA-CCGGATAAAATTAATA-GAAAAACAATTATACAAAACTA-CGAAAATGGGGGTTTAAAAATGATAGATC--TGCA----AT-TATTTATAAATTCGATTAAAG-CCGGGTGGGTCAAACGT---A------------TT-A-TAAAT-GAT-CAA-AATAA---AGGGGACT--TGAAA--CACATATAC
gi|21283 : AAA-CCTGATAAAATAAAAA-GGACAACACTAACTCAAGACTAT-GAAAATGGAGGTCTAAAAATGATTGATA--TTGA----AA-TGTTCATAAACTCTCTTAAAT-CAAGTTGGATAAAAAG----A------------TTAC-TTGAT------AACAGTAATTCCGGTCAAT--GGAAAGTCATATAT
gi|21284 : AAA-CCTGATAAAATAAAAA-GGACAACACTAACTCAAGACTAT-GAAAATGGAGGTCTAAAAATGATTGATA--TTGA----AA-TGTTCATAAACTCTCTTAAAT-CAAGTTGGATAAAAAG----A------------TTAC-TTGAT------AACAGTAATTCCGGTCAAT--GGAAAGTCATATAT
gi|21285 : AAATCCTGAAAAATTTAAAC-GTAAAACAATAATTCAAAA-TTTTGAAAACGGTGCTATCAAAATGATTGATATTTATA----AA-TTTCT-TAAATC--ATTAAAATCAAGCTGGAT
gi|21286 : AAA-CTGGATAAAATCAATA-GAAAAACAATTATATAA-------GAAAATGGGGGATTAAAAATGAAAGATC--TGCA----GT-TATTTATAAAATCGATT--------GGTGGGTCAAACGT---A------------CTAT-CA-AT-GAT-CAA-AATAA---AGGGTACT--GGGAA--TACATATAC
gi|21287 : AAA-CCTGATACAATTTGTC-GAAAAACAATAGTACAGGA-TTAAGGAAATGGGGGACT-AAAATGATTGATT--TA-A----ACATGTTTATAATAGCAATAAGGA-CAGAACGGGTCAAAAG----A------------ATAA-TCGAT-AAT-GAA-AATGA---AGGTGATT--GGAAA--CATATATACAT
gi|21288 : AAATAAAGC-GTAAAACTAATATACAAAA-TATTGAAAATCGTGGTATGAAACTGACAGATA--TAGA----AC-TTTTTATAAATTCAATAAAAG-CAAGTTGGGTTAAAAG----A------------CTAA-CAGAT-G-A-AAATAATAA---TGAAGAAT--GGAAG--TATATAAACA
gi|21289 : --TAGA----AC-TTTCTATAAATTCAATTAAAG-CAAGTTGGGTTAAACA----AACGCACCAAACATCAA-CAGAT-G-T-AAACAATAA---AGGCGAAT--GGAAG--AATATATACCTG
gi|21290 : ------------TTAA-CAGAT-G-T-TAACAATAA---CGGCGAAT--GGAAG--TATATATACATG
Alignments
lowQualScore : 11111111111111111 111111
lowQualScore : 2 1 4 1 0 0 7 44 1 1 1 33 22 4444 8 3 2 0 2 44444444444444444 2 000000 5 8888 33 777
lowQualScore : . . . . . . . .. . . . .. .. .... . . . . . ................. . ...... . .... .. ...
lowQualScore : 5 0 7 0 2 2 1 66 0 0 0 11 11 7777 9 2 2 4 7 44444444444444444 2 999999 2 8888 11 999
consensus : AAA-CCAGACAAAATTAAGC-GNAAAACAATTATACAAAA-TATTGAAAACGGNGGTNTGAAAATGATAGATA--TAGA----AC-TNTTTATAAATTCAATTAAAG-CAAGTTGGGTTAAACG----A------------TTAA-CAGAT-G-T-AAACAATAA---NGGCGAAT--GGAAG--CATATATACATG
Reference ( family-823 ) : AAA-CCAGACAAAATTAAGC-GNAAAACAATTATACAAAA-TATTGAAAACGGNGGTNTGAAAATGATAGATA--TAGA----AC-TNTTTATAAATTCAATTAAAG-CAAGTTGGGTTAAACG----A------------TTAA-CAGAT-G-T-AAACAATAA---NGGCGAAT--GGAAG--CATATATACATG
gi|21272 : AAA-CCAGACAAAATTAAGC-GAAAAACAATTATTCAAAA-TATTGAAAACGGTGGTATGAAGATGATAGATA--TAGA----GC-TTTTTATACATTCAATTAAGG-CAAGTTGGGTTAAACG----A------------TTAA-CAGAT-G-T-AAACAATAA---TGGCGAAT--GGAAG--TATACATACATG
gi|21273 : AAA-CCAGACAAAATTAAGC-GAAAAACAATTATTCAAAA-TATTGAAAACGGTGGTATGAAGATGATATATA--TAGA----GC-TTTTTATACATTCAATTAAGG-CAAGTTGGGTTAAACG----A------------TTAA-CAGAT-G-T-AAACAATAA---TGGCGAAT--GGAAG--TATATATACATG
gi|21274 : AAA-CCAGATAAAATAAAGC-GTAAAACTATTATACAAAA-TATTGAAAACGGTGGATTGAAAATGATAGATA--TAGA----AC-TTTTTATAAATTCAATAAAAG-CAAGTTGGGTTAAACG----A------------CTAA-CAGAT-G-T-ACATAATAA---TGGCGAAT--GGAAG--TATATATACA
gi|21275 : AAA-CCAGACAAAATTAAGC-GTAAAACAATTATTCAAAA-TACTGAAAACGGTGGTATGAAGTTGACAG--A--TAGA----GC-TTTTTATACATTCAATCAAGG-CAAGTTTGGTTAAGCG----A------------TTAA-CAGAT-G-TAAAACAATAA---TGGCGAAT--GGAAG--TATATATACATG
gi|21276 : AAA-CCAGACAAAGTTAAAT-GTAAAACTATTATACAAAA-TATTGAAAACGGTGGTATGAAGATGATAGATA--TAGATAGAAC-TTTTTATAAATTCAATTAAAG-CAAGTTGGGCTAAACG----A------------TTAA-CAGAT-A-T-AAACAATAA---AGGCGCAT--GGAAG--ACTATTTACATG
gi|21277 : AAA-CAAGACAAAGTAAAGC-GTAAACCTATTATA-AAAA-TATTGAAAACGATGGTATGAAGATGATAGATA--TATA----AC-GTTTGATACATTCAATAAAAA-CAAGTTGGGTTAAATG----A------------CTAA-CAGAT-G-T-AAACAATAA---TGACGAAT--GGAAG--AATATATACATG
gi|21278 : AAA-CCAGATCAAATTAAGC-GTAAA-CTATAATACAAAA-TATTTAAC-CGGTAGTATGAAAAAGATAGGTA--TAGA----AC-T-TTTATCAATTCAATAAAAG-CAAATTGGGTTAAAAG----A------------TTAA-CAGAT-G-A-AAACAATAA---TGGCGAAT--GGAAT--AATATATACATG
gi|21279 : AAA-CCAGACAAAA-TAAGTAGAAAAACAATTATACAAAA-TAACGAAAATGGGGGCTTAAAAATGATAGATC--T-GA----ATATGTTTATTAAGTCAATTAAAG-CAGGTTGGGTGAAAAGAATTA------------TCAACCAGA--G-T-----AATAC---AGGTGATTCAGGAAG--CATATATACATG
gi|21280 : AAA-CCAGACAAAA-TAAGTAGAAAGACAATTATACAAAA-TTACGAAAATGGGGGCTTAAAAATAATAGATC--T-GA----ATATGTTTATTAAGTCAATTAAAG-CAGGTTGGGTGAAAAGA---A------------TTAT-CA-AT-C-A-GAGTACTAC---AGGTGATT--GGAAG--CATATATACA
gi|21281 : AAA-TCTGATAAAATTAGTC-GAAAAACAATAATACAGGA-TGATGAAAACGGGGGCCTAAAAATGATTGATT--TA-A----ACATGTTTATAAAAGCAATTAAAG-CAGGATGGGTCAAAAG----A------------ATAA-TCGATAA-T-AAA-AATGA---GGGTGATT--GGAAA--CATATATACA
gi|21282 : AAA-CCGGATAAAATTAATA-GAAAAACAATTATACAAAACTA-CGAAAATGGGGGTTTAAAAATGATAGATC--TGCA----AT-TATTTATAAATTCGATTAAAG-CCGGGTGGGTCAAACGT---A------------TT-A-TAAAT-GAT-CAA-AATAA---AGGGGACT--TGAAA--CACATATAC
gi|21283 : AAA-CCTGATAAAATAAAAA-GGACAACACTAACTCAAGACTAT-GAAAATGGAGGTCTAAAAATGATTGATA--TTGA----AA-TGTTCATAAACTCTCTTAAAT-CAAGTTGGATAAAAAG----A------------TTAC-TTGAT------AACAGTAATTCCGGTCAAT--GGAAAGTCATATAT
gi|21284 : AAA-CCTGATAAAATAAAAA-GGACAACACTAACTCAAGACTAT-GAAAATGGAGGTCTAAAAATGATTGATA--TTGA----AA-TGTTCATAAACTCTCTTAAAT-CAAGTTGGATAAAAAG----A------------TTAC-TTGAT------AACAGTAATTCCGGTCAAT--GGAAAGTCATATAT
gi|21285 : AAATCCTGAAAAATTTAAAC-GTAAAACAATAATTCAAAA-TTTTGAAAACGGTGCTATCAAAATGATTGATATTTATA----AA-TTTCT-TAAATC--ATTAAAATCAAGCTGGAT
gi|21286 : AAA-CTGGATAAAATCAATA-GAAAAACAATTATATAA-------GAAAATGGGGGATTAAAAATGAAAGATC--TGCA----GT-TATTTATAAAATCGATT--------GGTGGGTCAAACGT---A------------CTAT-CA-AT-GAT-CAA-AATAA---AGGGTACT--GGGAA--TACATATAC
gi|21287 : AAA-CCTGATACAATTTGTC-GAAAAACAATAGTACAGGA-TTAAGGAAATGGGGGACT-AAAATGATTGATT--TA-A----ACATGTTTATAATAGCAATAAGGA-CAGAACGGGTCAAAAG----A------------ATAA-TCGAT-AAT-GAA-AATGA---AGGTGATT--GGAAA--CATATATACAT
gi|21288 : AAATAAAGC-GTAAAACTAATATACAAAA-TATTGAAAATCGTGGTATGAAACTGACAGATA--TAGA----AC-TTTTTATAAATTCAATAAAAG-CAAGTTGGGTTAAAAG----A------------CTAA-CAGAT-G-A-AAATAATAA---TGAAGAAT--GGAAG--TATATAAACA
gi|21289 : --TAGA----AC-TTTCTATAAATTCAATTAAAG-CAAGTTGGGTTAAACA----AACGCACCAAACATCAA-CAGAT-G-T-AAACAATAA---AGGCGAAT--GGAAG--AATATATACCTG
gi|21290 : ------------TTAA-CAGAT-G-T-TAACAATAA---CGGCGAAT--GGAAG--TATATATACATG
blockSeqs : T A A A C TT T A G TT AG TAGA A T T C AACGCACCAAACA C GTAA C TTCC CA GTC
blockSeqs : . A A T C TT T T G . AG . A T . C AATTA . AATA T TTCC . GTC
blockSeqs : . A . T C CT T A G . AG . A T . C AA . GATC C T . T
blockSeqs : . A . T . TT T A G . AG . A T . C TA . GATC C T . T
blockSeqs : . A . T . TT T A G . AT . . T . T TA . AATG C T . T
blockSeqs : . A . T . TT T A G . AG . . G . A A . GTA C A . A
blockSeqs : . A . A . AC G T A . GC . . G . A A . GTA T T . A
blockSeqs : . A . A . AC G T A . TG . . G . A A . ATA C T . A
blockSeqs : . T . A . AT G C A . TG . . A . A A . GTA C A . C
blockSeqs : . G . A . TT G T A . AT . . G . C A . GAA T A . C
blockSeqs : . T . G . AA A C A . GC . . G . A A . CAG C G . C
blockSeqs : . T . G . TT A C A . AG . . T . A A . GAA C A . C
blockSeqs : . T . T . C T A C . AG . . A . C A . GTA . A . T
blockSeqs : . G . A . T G T A . G . . G . A A . GTT . A . C
blockSeqs : . T . A . T G C G . G . . T . A A . GT . T . T
blockSeqs : . T . . T A . . A . . T . C A . . . A . A
blockSeqs : . A . . . . . . . C . T
blockSeqCons :
originalCons : AAA-CCAGACAAAATTAAGC-GNAAAACAATTATACAAAA-TATTGAAAACGGNGGTNTGAAAATGATAGATA--TAGA----AC-TNTTTATAAATTCAATTAAAG-CAAGTTGGGTTAAACG----A------------TTAA-CAGAT-G-T-AAACAATAA---NGGCGAAT--GGAAG--CATATATACATG
finalCons : AAA-CCAGACAAAATTAAGC-GNAAAACAATTATACAAAA-TATTGAAAACGGNGGTNTGAAAATGATAGATA--TAGA----AC-TNTTTATAAATTCAATTAAAG-CAAGTTGGGTTAAACG----A------------TTAA-CAGAT-G-T-AAACAATAA---NGGCGAAT--GGAAG--CATATATACATG
Alignments
lowQualScore : 11111111111111111 111111
lowQualScore : 2 1 4 1 0 0 7 44 1 1 1 33 22 4444 8 3 2 0 2 44444444444444444 2 000000 5 8888 33 777
lowQualScore : . . . . . . . .. . . . .. .. .... . . . . . ................. . ...... . .... .. ...
lowQualScore : 5 0 7 0 2 2 1 66 0 0 0 11 11 7777 9 2 2 4 7 44444444444444444 2 999999 2 8888 11 999
consensus : AAA-CCAGACAAAATTAAGC-GNAAAACAATTATACAAAA-TATTGAAAACGGNGGTNTGAAAATGATAGATA--TAGA----AC-TNTTTATAAATTCAATTAAAG-CAAGTTGGGTTAAACG----A------------TTAA-CAGAT-G-T-AAACAATAA---NGGCGAAT--GGAAG--CATATATACATG
Reference ( family-823 ) : AAA-CCAGACAAAATTAAGC-GNAAAACAATTATACAAAA-TATTGAAAACGGNGGTNTGAAAATGATAGATA--TAGA----AC-TNTTTATAAATTCAATTAAAG-CAAGTTGGGTTAAACG----A------------TTAA-CAGAT-G-T-AAACAATAA---NGGCGAAT--GGAAG--CATATATACATG
gi|21272 : AAA-CCAGACAAAATTAAGC-GAAAAACAATTATTCAAAA-TATTGAAAACGGTGGTATGAAGATGATAGATA--TAGA----GC-TTTTTATACATTCAATTAAGG-CAAGTTGGGTTAAACG----A------------TTAA-CAGAT-G-T-AAACAATAA---TGGCGAAT--GGAAG--TATACATACATG
gi|21273 : AAA-CCAGACAAAATTAAGC-GAAAAACAATTATTCAAAA-TATTGAAAACGGTGGTATGAAGATGATATATA--TAGA----GC-TTTTTATACATTCAATTAAGG-CAAGTTGGGTTAAACG----A------------TTAA-CAGAT-G-T-AAACAATAA---TGGCGAAT--GGAAG--TATATATACATG
gi|21274 : AAA-CCAGATAAAATAAAGC-GTAAAACTATTATACAAAA-TATTGAAAACGGTGGATTGAAAATGATAGATA--TAGA----AC-TTTTTATAAATTCAATAAAAG-CAAGTTGGGTTAAACG----A------------CTAA-CAGAT-G-T-ACATAATAA---TGGCGAAT--GGAAG--TATATATACA
gi|21275 : AAA-CCAGACAAAATTAAGC-GTAAAACAATTATTCAAAA-TACTGAAAACGGTGGTATGAAGTTGACAG--A--TAGA----GC-TTTTTATACATTCAATCAAGG-CAAGTTTGGTTAAGCG----A------------TTAA-CAGAT-G-TAAAACAATAA---TGGCGAAT--GGAAG--TATATATACATG
gi|21276 : AAA-CCAGACAAAGTTAAAT-GTAAAACTATTATACAAAA-TATTGAAAACGGTGGTATGAAGATGATAGATA--TAGATAGAAC-TTTTTATAAATTCAATTAAAG-CAAGTTGGGCTAAACG----A------------TTAA-CAGAT-A-T-AAACAATAA---AGGCGCAT--GGAAG--ACTATTTACATG
gi|21277 : AAA-CAAGACAAAGTAAAGC-GTAAACCTATTATA-AAAA-TATTGAAAACGATGGTATGAAGATGATAGATA--TATA----AC-GTTTGATACATTCAATAAAAA-CAAGTTGGGTTAAATG----A------------CTAA-CAGAT-G-T-AAACAATAA---TGACGAAT--GGAAG--AATATATACATG
gi|21278 : AAA-CCAGATCAAATTAAGC-GTAAA-CTATAATACAAAA-TATTTAAC-CGGTAGTATGAAAAAGATAGGTA--TAGA----AC-T-TTTATCAATTCAATAAAAG-CAAATTGGGTTAAAAG----A------------TTAA-CAGAT-G-A-AAACAATAA---TGGCGAAT--GGAAT--AATATATACATG
gi|21279 : AAA-CCAGACAAAA-TAAGTAGAAAAACAATTATACAAAA-TAACGAAAATGGGGGCTTAAAAATGATAGATC--T-GA----ATATGTTTATTAAGTCAATTAAAG-CAGGTTGGGTGAAAAGAATTA------------TCAACCAGA--G-T-----AATAC---AGGTGATTCAGGAAG--CATATATACATG
gi|21280 : AAA-CCAGACAAAA-TAAGTAGAAAGACAATTATACAAAA-TTACGAAAATGGGGGCTTAAAAATAATAGATC--T-GA----ATATGTTTATTAAGTCAATTAAAG-CAGGTTGGGTGAAAAGA---A------------TTAT-CA-AT-C-A-GAGTACTAC---AGGTGATT--GGAAG--CATATATACA
gi|21281 : AAA-TCTGATAAAATTAGTC-GAAAAACAATAATACAGGA-TGATGAAAACGGGGGCCTAAAAATGATTGATT--TA-A----ACATGTTTATAAAAGCAATTAAAG-CAGGATGGGTCAAAAG----A------------ATAA-TCGATAA-T-AAA-AATGA---GGGTGATT--GGAAA--CATATATACA
gi|21282 : AAA-CCGGATAAAATTAATA-GAAAAACAATTATACAAAACTA-CGAAAATGGGGGTTTAAAAATGATAGATC--TGCA----AT-TATTTATAAATTCGATTAAAG-CCGGGTGGGTCAAACGT---A------------TT-A-TAAAT-GAT-CAA-AATAA---AGGGGACT--TGAAA--CACATATAC
gi|21283 : AAA-CCTGATAAAATAAAAA-GGACAACACTAACTCAAGACTAT-GAAAATGGAGGTCTAAAAATGATTGATA--TTGA----AA-TGTTCATAAACTCTCTTAAAT-CAAGTTGGATAAAAAG----A------------TTAC-TTGAT------AACAGTAATTCCGGTCAAT--GGAAAGTCATATAT
gi|21284 : AAA-CCTGATAAAATAAAAA-GGACAACACTAACTCAAGACTAT-GAAAATGGAGGTCTAAAAATGATTGATA--TTGA----AA-TGTTCATAAACTCTCTTAAAT-CAAGTTGGATAAAAAG----A------------TTAC-TTGAT------AACAGTAATTCCGGTCAAT--GGAAAGTCATATAT
gi|21285 : AAATCCTGAAAAATTTAAAC-GTAAAACAATAATTCAAAA-TTTTGAAAACGGTGCTATCAAAATGATTGATATTTATA----AA-TTTCT-TAAATC--ATTAAAATCAAGCTGGAT
gi|21286 : AAA-CTGGATAAAATCAATA-GAAAAACAATTATATAA-------GAAAATGGGGGATTAAAAATGAAAGATC--TGCA----GT-TATTTATAAAATCGATT--------GGTGGGTCAAACGT---A------------CTAT-CA-AT-GAT-CAA-AATAA---AGGGTACT--GGGAA--TACATATAC
gi|21287 : AAA-CCTGATACAATTTGTC-GAAAAACAATAGTACAGGA-TTAAGGAAATGGGGGACT-AAAATGATTGATT--TA-A----ACATGTTTATAATAGCAATAAGGA-CAGAACGGGTCAAAAG----A------------ATAA-TCGAT-AAT-GAA-AATGA---AGGTGATT--GGAAA--CATATATACAT
gi|21288 : AAATAAAGC-GTAAAACTAATATACAAAA-TATTGAAAATCGTGGTATGAAACTGACAGATA--TAGA----AC-TTTTTATAAATTCAATAAAAG-CAAGTTGGGTTAAAAG----A------------CTAA-CAGAT-G-A-AAATAATAA---TGAAGAAT--GGAAG--TATATAAACA
gi|21289 : --TAGA----AC-TTTCTATAAATTCAATTAAAG-CAAGTTGGGTTAAACA----AACGCACCAAACATCAA-CAGAT-G-T-AAACAATAA---AGGCGAAT--GGAAG--AATATATACCTG
gi|21290 : ------------TTAA-CAGAT-G-T-TAACAATAA---CGGCGAAT--GGAAG--TATATATACATG