lowQualScore                  :                                                                                 111                          111111111       11111111                                                                         11111                                                         3                                                     
lowQualScore                  :         1         4        3                6        44 6 3            3     3  777   44 3        3   7      222222222       00000000      2        2 2       444                 1       4           555     00000   555     2                             2               7                          4          8       2       
lowQualScore                  :         .         .        .                .        .. . .            .     .  ...   .. .        .   .      .........       ........      .        . .       ...                 .       .           ...     .....   ...     .                             .               .                          .          .       .       
lowQualScore                  :         0         8        3                0        66 7 3            1     1  888   22 1        2   4      333333333       44444444      7        9 8       777                 7       0           000     66666   000     9                             7               3                          9          9       9       
consensus                     : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGCGAAA--T-C-AACGACATTATT-GCAGA-AA-N-AAG--T-ATTGGTGCGACATAACTCA---------AATCAAC--------TAACAG-ACAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTCTGTAATGGCCAATAGATGG---TACTTG----GAA---AGATT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAGCACAAAAAGTATCAC-ATGCTCT
Reference ( gi|140910 )       : TTCAGTACTGACATCATTATTTACTGA-TACAGGAGATCTCAGAGTCGCGAAA--T-C-AACGACATTATT-GCAGA-AA-C-AAG--T-ATTGGTGCAACAAAACTCA---------AATCAAC--------TAACAG-ACAACTAA-GTATATTCA---TAGACAAGTCTGCTGTTTTGTAATGACCAATAGATGG---TACTTA----GAA---AGATT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTT-CCTAGTTTTCGACAGATATTCGCCATCCAGCACAAAACGTATCAC-ATGCTCT
gi|140909                     : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATTGCGAAA--T-TTAACGACATTATT-GCAGA-AA-T-AAG--T-ATTGGTGCTACAAAACTCA---------AATCAAC--------TAACAG-ACAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTTTGTAATGGTCAACAGGTGG---TACTTA----GAA---AGATT-ATTTTGAGAACTTTCAGGCCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAACACAAAAAGTACCAC-ATGCTCT
gi|140912                     : TTCAGTACCAATATCATTGTTTACTGA-TACAGGAGATCTCTGTATTGCGAAA--TTC-AACGACATTATT-GCAGA-AA-T-AAG--T-ATTGACGCAACAATACTCA---------AATCAAC--------TAACAG-ACAACTTA-GCATATTCA---TAGACAAATCTGCTGTTTTGTAATGGTTAATTGATGG---AACTTA----GAA---AGATT-ATTTTATGAACATTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAGCAAAAAAAGTATCACAATGCTCT
gi|140911                     : TTCTGTACTGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGTGAAA--T-C-AACGTCATTATT-GCAGA-AG---AAG--T-ATTATTGCGACATTACTCA---------AATCAAC--------TAACAT-ACAACTAA-GTATATTCA---TAGACAAGTCTGCTGTTCTGTTATGGCCAATAGATGG---TACTTG----TAA---AGATT-ATTTTTAAAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATACGCCATTCAACA-AAAATGTATTAC-ATACTCT
gi|140913                     : TTCAGTACTGACATCATTGTTCACTGA-TACAGGAGATCTCAGAATCGCGAAA--T-C-AACAAAATTATT-GCAGA-AA-A-AAG--A-ATTGGTGCAACATAACTAA---------AATCAAT--------TAACAG-ACA--TAATGCATATTTA---TAGACTAGCCTGCTGTTCTGTAATGGCCAATAGATGG---TACTTG----GAA---AGATT-ATTTTAAGAATTTTTAGCTC---TACATA-GATACTAAGATGTTTACCTAGTTTTCGGTAGATATTCGCCATTCAGCACAAAAAGTATCAC-ATGC
gi|140915                     : TTCAGTATTGACATCATTG----CTAA-TACAGGAGATCTCAGAATCACCATA--T-C-TACGACATTATT-GCAGA-AA-G-AAG--T-ATTGTCGCGACATAATTCA---------AATCAAT--------TAACAG-ACAACTAA-GCATATTCA---TAGACAAGTCTGCTATTCTGTAATGGCCAATAGATGG---TACTTG----GAA---AGATT-ATTTTGAGAACTTTTAGG-----TACATA-GAAACTAAGATGTGTACCTAGTTTTCCAATGATATTTG----CCAACA-AAAATGTATAAC-ATGCTCT
gi|140914                     : TTCAGTACCGACATCATTGTTTTCTGA-TACAGGAGATCACAGAATCGCGAAAAAT-C-AACGACATTATT-GCAGA-AA-G-AAG--T-ATAGGTGCGGTATAACTCA---------TATCATC--------TAACAT-ACAACTAA-GCATATTCATATTAAACAAGTCTGCTGTTCTGTAATGGTCAATAAATGG---TACTTG----GAA---AGATTAATTTTGAGAACTTTTAGGTCTAATACGTA-GAAACTAAGAAGTTTATCTAGTTGACAACCGATATTCGCCATTCAACACAAGA
gi|140916                     : TTCAGTACCGACATCATTGTTTACAGAATACAGGAGGTCATAAAATTGCGAAA--A-C-AAAGACATTATT-GCAGA-AAGC-ATG----ATTGGTGCGACATTACTCA---------AATTAAC--------TTACAG-AAAACTAA-GTATATTAA---TAGACAAGTCTGCTGTTCTGTAATGGTCAATAGATGA---CACACT----GGA---AGGTT-ATTTTGAGAATTTTAAGGTCTTCTA-ATATGAAACGAAGATGCGTACCTAGTTTTTGACAGATATTCACCATTCAGCATGAAACGTATCAT-ATGCTCT
gi|140917                     : TTCAGAACCGACATCATTGTTAACTGA-TACAGGAGATCACAGAATCGCGAAA--TTC-AACAACATTATT-GCAGA-AA-C-GCGACT-ATTGGTGCGACAAAACTCA---------AATCAAC--------TAACAG-ACAACTAA-GCATTTTCA---TAGACAAGT
gi|140918                     : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGCAATA--T-C-AACAACATTATT-GCAGA-AA-G-AAG--T-ATTAGTGCGACGGAACTCA---------AATCAAT--------TAACAG-
gi|140919                     :     GTACTGACATCATTATTTACAGA-TACAAGAGATCTCAGAATTGTGAAA--T-C-AACGACATAACT-GCAGA-AA-G-AAG--T-ATTAGAGCGACATTACTCA---------AATCAAC--------TAACAG-ACAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTCTAAACTGGCCAATAGAT-G---TCTTTG----GAA---ATATT-ATTTTGAGAACTTTAAGGTCTAATACATA-GAAACTAAGATGTTA-CCTTGTTTTTGACAGATATTTGCCATTCAGCACAAAATGTATCAC-ATGCTCT
gi|140920                     :     GTACCGACATCATTGTTTACAGA-TACAGGAGACCTCAGAATTGCGAAA--T-C-AACGGCATTACT-GCAGA-AA---GAT--T-ATTGGAGCGACATAACTCA---------AATCAAC--------TAACAG-ACAACTAA-GCATATTCA---TAGACAAATCTGCTGTTCTGTAATGGCCAATAGATG-------TT------AA---ATATT-ATTTTGAGAACTTAAAGGTCTAATACATA-GCTACTAAGATGTTTACCTAGTTATCGACAGATATTCGCCATTCAGAACAAAATTTATCAC-ATGCTCT
gi|140921                     :     GTACCGACATTATTGGTTACTGA-TACATGAAATCTCAGAATCGTGAAA--T-C-AACGACAGTAGTAACAGACAA-CTAAG--T-AT
gi|140921                     :                                                              CGACATTATT-G------------G--TTACTGATACATGAAATCTCAGAATCGTGAAATCAACGACAGTAGTAACAG-ACAACTAA-GTATATTCA---TATACA----TGTTGTTCTGTAATGGCCAATAGATGattcatatacatgttgttctgtaatggccaatagatg
gi|140923                     :                                                                                                        gtacCA---------AATAAA----------GACAGGACAAC--A-GCATATTCA---TAGACAAATCTGCTTTTCTGCAATGGCTAATAGATGG---TATTTG----GAA---ATATT-ATTTTGTGAACTTTAAGGTCTAATAAATA-GAAACAAAGATGTGTACCTAGTTTTCGACAGATATTCGCCATTCAGCACAAAACGTATCAC-ATGGTCT
gi|140924                     :                                                                                                                         TCAAT--------TAACAG-ACAATTAA-GCATATTCA---TAGACCATTCTGCTGTTTTGTAATGACCAATAGATGG---TACTTA----GTA---ATATT-TTTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTCCCTAGTTTTCGACAGATATTCGATACTCAACACAAAAATTATCAA-A-GCTCT
gi|140925                     :                                                                                                                                       AACAG-ACAACTAA-CCATATT-A---TAGACAAGTCTGCTGTTCTGCATTGGCCAATAGATAA---TACTTC----AA-------TT-ATTTTGAGAACTTCTAGGTCTTATACACA-GAAAACAAGATGTGTACCTATTTTTCTGCAGATATTCACCATTCAGCACAAAAAGTATCAC-ATGCTCT
gi|140922                     :                                                                                                                                                            TCA---TAGACAAGTCTGCTGTTTTGTAATGGTCAATAGATGG---TACTTA----GAA---AGGTT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTGAGATGTTTACCTAGTTTTTGACAAATATTCGCCATTCAGCACAAAAAGTATCAC-ATGCTCT
gi|140926                     :                                                                                                                                                 cggcataaaaatgacgctaaatattcaatcaatcaaGTCATGAC-AAGAGAGGGGAATACTTATTCTGAAGTCAGA---ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGCGTATCTAGTTTTCGACCGATATGCGCCATTCAGCACGATAAGTATCAC-ATGCTCT
gi|140927                     :                                                                                                                                                                                                                                                     AATACATA-GAAACTTAGATATTTTCCTAGTTTTCGACAGATATTCGCTATTCAGCACAAAAAGTATCAC-ATGCTTT





Alignments
lowQualScore                  :                            3                         44 6 3            3     3  44   44             0           2  99999999      2 33       2         444                                     444   2  77777   444     2                             2                                                      5       2       
lowQualScore                  :                            .                         .. . .            .     .  ..   ..             .           .  ........      . ..       .         ...                                     ...   .  .....   ...     .                             .                                                      .       .       
lowQualScore                  :                            1                         22 2 1            1     1  11   22             8           5  11111111      4 44       5         444                                     777   7  11111   777     7                             5                                                      3       7       
consensus                     : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGCGAAA--T-C-AACGACATTATT-GCAGA-AA-GAAG--TATTGGTGCGACATAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGCTCT
Reference ( family-821 )      : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGCGAAA--T-C-AACGACATTATT-GCAGA-AA-NAAG--TATTGGTGCGACATAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGCTCT
gi|140909                     : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATTGCGAAA--T-TTAACGACATTATT-GCAGA-AA-TAAG--TATTGGTGCTACAAAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTTTGTAATGGTCAACAGGTGG---TAC-TTA----GAA---AGATT-ATTTTGAGAACTTTCAGGCCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAACACAAAAA-GTACCAC-ATGCTCT
gi|140910                     : TTCAGTACTGACATCATTATTTACTGA-TACAGGAGATCTCAGAGTCGCGAAA--T-C-AACGACATTATT-GCAGA-AA-CAAG--TATTGGTGCAACAAAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GTATATTCA---TAGACAAGTCTGCTGTTTTGTAATGACCAATAGATGG---TAC-TTA----GAA---AGATT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTT-CCTAGTTTTCGACAGATATTCGCCATCCAGCACAAAAC-GTATCAC-ATGCTCT
gi|140911                     : TTCTGTACTGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGTGAAA--T-C-AACGTCATTATT-GCAGA-A--GAAG--TATTATTGCGACATTACTCAAATCA-AC--------TAACAT-A--CAACTAA-GTATATTCA---TAGACAAGTCTGCTGTTCTGTTATGGCCAATAGATGG---TAC-TTG----TAA---AGATT-ATTTTTAAAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATACGCCATTCA--ACAAAAATGTATTAC-ATACTCT
gi|140912                     : TTCAGTACCAATATCATTGTTTACTGA-TACAGGAGATCTCTGTATTGCGAAA--TTC-AACGACATTATT-GCAGA-AA-TAAG--TATTGACGCAACAATACTCAAATCA-AC--------TAACAG-A--CAACTTA-GCATATTCA---TAGACAAATCTGCTGTTTTGTAATGGTTAATTGATGG---AAC-TTA----GAA---AGATT-ATTTTATGAACATTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAGCAAAAAAA-GTATCACAATGCTCT
gi|140913                     : TTCAGTACTGACATCATTGTTCACTGA-TACAGGAGATCTCAGAATCGCGAAA--T-C-AACAAAATTATT-GCAGA-AA-AAAG--AATTGGTGCAACATAACTAAAATCA-AT--------TAACAG-A--CA--TAATGCATATTTA---TAGACTAGCCTGCTGTTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTAAGAATTTTTAGCTC---TACATA-GATACTAAGATGTTTACCTAGTTTTCGGTAGATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGC
gi|140914                     : TTCAGTACCGACATCATTGTTTTCTGA-TACAGGAGATCACAGAATCGCGAAAAAT-C-AACGACATTATT-GCAGA-AA-GAAG--TATAGGTGCGGTATAACTCATATCA-TC--------TAACAT-A--CAACTAA-GCATATTCATATTAAACAAGTCTGCTGTTCTGTAATGGTCAATAAATGG---TAC-TTG----GAA---AGATTAATTTTGAGAACTTTTAGGTCTAATACGTA-GAAACTAAGAAGTTTATCTAGTTGACAACCGATATTCGCCATTCAACACAAGA
gi|140915                     : TTCAGTATTGACATCATTG----CTAA-TACAGGAGATCTCAGAATCACCATA--T-C-TACGACATTATT-GCAGA-AA-GAAG--TATTGTCGCGACATAATTCAAATCA-AT--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTATTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTGAGAACTTTTAGG-----TACATA-GAAACTAAGATGTGTACCTAGTTTTCCAATGATATTTGCCA------ACAAAAATGTATAAC-ATGCTCT
gi|140916                     : TTCAGTACCGACATCATTGTTTACAGAATACAGGAGGTCATAAAATTGCGAAA--A-C-AAAGACATTATT-GCAGA-AA-GCAT--GATTGGTGCGACATTACTCAAATTA-AC--------TTACAG-A--AAACTAA-GTATATTAA---TAGACAAGTCTGCTGTTCTGTAATGGTCAATAGATGA---CACACTG----G-A---AGGTT-ATTTTGAGAATTTTAAGGTCTTCTA-ATATGAAACGAAGATGCGTACCTAGTTTTTGACAGATATTCACCATTCAGCATGAAAC-GTATCAT-ATGCTCT
gi|140917                     : TTCAGAACCGACATCATTGTTAACTGA-TACAGGAGATCACAGAATCGCGAAA--TTC-AACAACATTATT-GCAGA-AA-CGCGACTATTGGTGCGACAAAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATTTTCA---TAGACAAGT
gi|140918                     : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGCAATA--T-C-AACAACATTATT-GCAGA-AA-GAAG--TATTAGTGCGACGGAACTCAAATCA-AT--------TAACAG-
gi|140919                     :     GTACTGACATCATTATTTACAGA-TACAAGAGATCTCAGAATTGTGAAA--T-C-AACGACATAACT-GCAGA-AA-GAAG--TATTAGAGCGACATTACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTCTAAACTGGCCAATAGAT-G---TCT-TTG----GAA---ATATT-ATTTTGAGAACTTTAAGGTCTAATACATA-GAAACTAAGATG-TTACCTTGTTTTTGACAGATATTTGCCATTCAGCACAAAAT-GTATCAC-ATGCTCT
gi|140920                     :     GTACCGACATCATTGTTTACAGA-TACAGGAGACCTCAGAATTGCGAAA--T-C-AACGGCATTACT-GCAGA-AA-GA-T--TATTGGAGCGACATAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAATCTGCTGTTCTGTAATGGCCAATAGATG--------TT------AA---ATATT-ATTTTGAGAACTTAAAGGTCTAATACATA-GCTACTAAGATGTTTACCTAGTTATCGACAGATATTCGCCATTCAGAACAAAAT-TTATCAC-ATGCTCT
gi|140921                     :     GTACCGACATTATTGGTTACTGA-TACATGAAATCTCAGAATCGTGAAA--T-C-AACGACAGTAGTAACAGACAACTAAG--TAT
gi|140921                     :                                                                                                           AAATCA-ACGACAGTAGTAACAG-A--CAACTAA-GTATATTCA---TATACA----TGTTGTTCTGTAATGGCCAATAGATGattcatatacatgttgttctgtaatggccaatagatg
gi|140922                     :                                                   gtaccgacattattggttactgatacatgaaatctcagaatcgtgCGGCATAA---AAATGACGC--------TAA-AT-ATTCAATCAA-TCA-AT-CA---TAGACAAGTCTGCTGTTTTGTAATGGTCAATAGATGG---TAC-TTA----GAA---AGGTT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTGAGATGTTTACCTAGTTTTTGACAAATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGCTCT
gi|140923                     :                                                                                                          CAAATAA-A----------GACAGGA--CAAC--A-GCATATTCA---TAGACAAATCTGCTTTTCTGCAATGGCTAATAGATGG---TAT-TTG----GAA---ATATT-ATTTTGTGAACTTTAAGGTCTAATAAATA-GAAACAAAGATGTGTACCTAGTTTTCGACAGATATTCGCCATTCAGCACAAAAC-GTATCAC-ATGGTCT
gi|140924                     :                                                                                                              TCA-AT--------TAACAG-A--CAATTAA-GCATATTCA---TAGACCATTCTGCTGTTTTGTAATGACCAATAGATGG---TAC-TTA----GTA---ATATT-TTTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTCCCTAGTTTTCGACAGATATTCGATACTCAACACAAAAA-TTATCAA-A-GCTCT
gi|140925                     :                                                                                                                             AACAG-A--CAACTAA-CCATATT-A---TAGACAAGTCTGCTGTTCTGCATTGGCCAATAGATAA---TAC-TTC----AA-------TT-ATTTTGAGAACTTCTAGGTCTTATACACA-GAAAACAAGATGTGTACCTATTTTTCTGCAGATATTCACCATTCAGCACAAAAA-GTATCAC-ATGCTCT
gi|140926                     :                                                                                                                                                                             GTCATGAC-AAGAGAGGGGAATAC-TTATTCTGAAGTCAGA---ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGCGTATCTAGTTTTCGACCGATATGCGCCATTCAGCACGATAA-GTATCAC-ATGCTCT
gi|140927                     :                                                                                                                                                                                                                                              AATACATA-GAAACTTAGATATTTTCCTAGTTTTCGACAGATATTCGCTATTCAGCACAAAAA-GTATCAC-ATGCTTT





Alignments
lowQualScore                  :                            3                         44 6 3            3       8888                0           2  99999999      2 33       2         444                                     444   2  77777   444     2                             2                                                      5       2       
lowQualScore                  :                            .                         .. . .            .       ....                .           .  ........      . ..       .         ...                                     ...   .  .....   ...     .                             .                                                      .       .       
lowQualScore                  :                            1                         22 2 1            1       6666                8           5  11111111      4 44       5         444                                     777   7  11111   777     7                             5                                                      3       7       
consensus                     : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGCGAAA--T-C-AACGACATTATT-GCAGAAA-G--AAGTATTGGTGCGACATAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGCTCT
Reference ( family-821 )      : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGCGAAA--T-C-AACGACATTATT-GCAGAAA-G--AAGTATTGGTGCGACATAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGCTCT
gi|140909                     : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATTGCGAAA--T-TTAACGACATTATT-GCAGAAA-T--AAGTATTGGTGCTACAAAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTTTGTAATGGTCAACAGGTGG---TAC-TTA----GAA---AGATT-ATTTTGAGAACTTTCAGGCCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAACACAAAAA-GTACCAC-ATGCTCT
gi|140910                     : TTCAGTACTGACATCATTATTTACTGA-TACAGGAGATCTCAGAGTCGCGAAA--T-C-AACGACATTATT-GCAGAAA-C--AAGTATTGGTGCAACAAAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GTATATTCA---TAGACAAGTCTGCTGTTTTGTAATGACCAATAGATGG---TAC-TTA----GAA---AGATT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTT-CCTAGTTTTCGACAGATATTCGCCATCCAGCACAAAAC-GTATCAC-ATGCTCT
gi|140911                     : TTCTGTACTGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGTGAAA--T-C-AACGTCATTATT-GCAGAA--G--AAGTATTATTGCGACATTACTCAAATCA-AC--------TAACAT-A--CAACTAA-GTATATTCA---TAGACAAGTCTGCTGTTCTGTTATGGCCAATAGATGG---TAC-TTG----TAA---AGATT-ATTTTTAAAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATACGCCATTCA--ACAAAAATGTATTAC-ATACTCT
gi|140912                     : TTCAGTACCAATATCATTGTTTACTGA-TACAGGAGATCTCTGTATTGCGAAA--TTC-AACGACATTATT-GCAGAAA-T--AAGTATTGACGCAACAATACTCAAATCA-AC--------TAACAG-A--CAACTTA-GCATATTCA---TAGACAAATCTGCTGTTTTGTAATGGTTAATTGATGG---AAC-TTA----GAA---AGATT-ATTTTATGAACATTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAGCAAAAAAA-GTATCACAATGCTCT
gi|140913                     : TTCAGTACTGACATCATTGTTCACTGA-TACAGGAGATCTCAGAATCGCGAAA--T-C-AACAAAATTATT-GCAGAAA-A--AAGAATTGGTGCAACATAACTAAAATCA-AT--------TAACAG-A--CA--TAATGCATATTTA---TAGACTAGCCTGCTGTTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTAAGAATTTTTAGCTC---TACATA-GATACTAAGATGTTTACCTAGTTTTCGGTAGATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGC
gi|140914                     : TTCAGTACCGACATCATTGTTTTCTGA-TACAGGAGATCACAGAATCGCGAAAAAT-C-AACGACATTATT-GCAGAAA-G--AAGTATAGGTGCGGTATAACTCATATCA-TC--------TAACAT-A--CAACTAA-GCATATTCATATTAAACAAGTCTGCTGTTCTGTAATGGTCAATAAATGG---TAC-TTG----GAA---AGATTAATTTTGAGAACTTTTAGGTCTAATACGTA-GAAACTAAGAAGTTTATCTAGTTGACAACCGATATTCGCCATTCAACACAAGA
gi|140915                     : TTCAGTATTGACATCATTG----CTAA-TACAGGAGATCTCAGAATCACCATA--T-C-TACGACATTATT-GCAGAAA-G--AAGTATTGTCGCGACATAATTCAAATCA-AT--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTATTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTGAGAACTTTTAGG-----TACATA-GAAACTAAGATGTGTACCTAGTTTTCCAATGATATTTGCCA------ACAAAAATGTATAAC-ATGCTCT
gi|140916                     : TTCAGTACCGACATCATTGTTTACAGAATACAGGAGGTCATAAAATTGCGAAA--A-C-AAAGACATTATT-GCAGAAA-G--CATGATTGGTGCGACATTACTCAAATTA-AC--------TTACAG-A--AAACTAA-GTATATTAA---TAGACAAGTCTGCTGTTCTGTAATGGTCAATAGATGA---CACACTG----G-A---AGGTT-ATTTTGAGAATTTTAAGGTCTTCTA-ATATGAAACGAAGATGCGTACCTAGTTTTTGACAGATATTCACCATTCAGCATGAAAC-GTATCAT-ATGCTCT
gi|140917                     : TTCAGAACCGACATCATTGTTAACTGA-TACAGGAGATCACAGAATCGCGAAA--TTC-AACAACATTATT-GCAGAAACGC-GACTATTGGTGCGACAAAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATTTTCA---TAGACAAGT
gi|140918                     : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGCAATA--T-C-AACAACATTATT-GCAGAAA-G--AAGTATTAGTGCGACGGAACTCAAATCA-AT--------TAACAG-
gi|140919                     :     GTACTGACATCATTATTTACAGA-TACAAGAGATCTCAGAATTGTGAAA--T-C-AACGACATAACT-GCAGAAA-G--AAGTATTAGAGCGACATTACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTCTAAACTGGCCAATAGAT-G---TCT-TTG----GAA---ATATT-ATTTTGAGAACTTTAAGGTCTAATACATA-GAAACTAAGATG-TTACCTTGTTTTTGACAGATATTTGCCATTCAGCACAAAAT-GTATCAC-ATGCTCT
gi|140920                     :     GTACCGACATCATTGTTTACAGA-TACAGGAGACCTCAGAATTGCGAAA--T-C-AACGGCATTACT-GCAGAAA-G--A-TTATTGGAGCGACATAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAATCTGCTGTTCTGTAATGGCCAATAGATG--------TT------AA---ATATT-ATTTTGAGAACTTAAAGGTCTAATACATA-GCTACTAAGATGTTTACCTAGTTATCGACAGATATTCGCCATTCAGAACAAAAT-TTATCAC-ATGCTCT
gi|140921                     :     GTACCGACATTATTGGTTACTGA-TACATGAAATCTCAGAATCGTGAAA--T-C-AACGACAGTAGTAACAGACA-ACTAAGTAT
gi|140921                     :                                                                                                          AAATCA-ACGACAGTAGTAACAG-A--CAACTAA-GTATATTCA---TATACA----TGTTGTTCTGTAATGGCCAATAGATGattcatatacatgttgttctgtaatggccaatagatg
gi|140922                     :                                                  gtaccgacattattggttactgatacatgaaatctcagaatcgtgCGGCATAA---AAATGACGC--------TAA-AT-ATTCAATCAA-TCA-AT-CA---TAGACAAGTCTGCTGTTTTGTAATGGTCAATAGATGG---TAC-TTA----GAA---AGGTT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTGAGATGTTTACCTAGTTTTTGACAAATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGCTCT
gi|140923                     :                                                                                                         CAAATAA-A----------GACAGGA--CAAC--A-GCATATTCA---TAGACAAATCTGCTTTTCTGCAATGGCTAATAGATGG---TAT-TTG----GAA---ATATT-ATTTTGTGAACTTTAAGGTCTAATAAATA-GAAACAAAGATGTGTACCTAGTTTTCGACAGATATTCGCCATTCAGCACAAAAC-GTATCAC-ATGGTCT
gi|140924                     :                                                                                                             TCA-AT--------TAACAG-A--CAATTAA-GCATATTCA---TAGACCATTCTGCTGTTTTGTAATGACCAATAGATGG---TAC-TTA----GTA---ATATT-TTTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTCCCTAGTTTTCGACAGATATTCGATACTCAACACAAAAA-TTATCAA-A-GCTCT
gi|140925                     :                                                                                                                            AACAG-A--CAACTAA-CCATATT-A---TAGACAAGTCTGCTGTTCTGCATTGGCCAATAGATAA---TAC-TTC----AA-------TT-ATTTTGAGAACTTCTAGGTCTTATACACA-GAAAACAAGATGTGTACCTATTTTTCTGCAGATATTCACCATTCAGCACAAAAA-GTATCAC-ATGCTCT
gi|140926                     :                                                                                                                                                                            GTCATGAC-AAGAGAGGGGAATAC-TTATTCTGAAGTCAGA---ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGCGTATCTAGTTTTCGACCGATATGCGCCATTCAGCACGATAA-GTATCAC-ATGCTCT
gi|140927                     :                                                                                                                                                                                                                                             AATACATA-GAAACTTAGATATTTTCCTAGTTTTCGACAGATATTCGCTATTCAGCACAAAAA-GTATCAC-ATGCTTT





Alignments
lowQualScore                  :                            3                         44 6 3            3       8888                0           2  99999999      2 33       2         444                                     444   2  77777   444     2                             2                                                      5       2       
lowQualScore                  :                            .                         .. . .            .       ....                .           .  ........      . ..       .         ...                                     ...   .  .....   ...     .                             .                                                      .       .       
lowQualScore                  :                            1                         22 2 1            1       6666                8           5  11111111      4 44       5         444                                     777   7  11111   777     7                             5                                                      3       7       
consensus                     : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGCGAAA--T-C-AACGACATTATT-GCAGAAA-G--AAGTATTGGTGCGACATAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGCTCT
Reference ( family-821 )      : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGCGAAA--T-C-AACGACATTATT-GCAGAAA-G--AAGTATTGGTGCGACATAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGCTCT
gi|140909                     : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATTGCGAAA--T-TTAACGACATTATT-GCAGAAA-T--AAGTATTGGTGCTACAAAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTTTGTAATGGTCAACAGGTGG---TAC-TTA----GAA---AGATT-ATTTTGAGAACTTTCAGGCCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAACACAAAAA-GTACCAC-ATGCTCT
gi|140910                     : TTCAGTACTGACATCATTATTTACTGA-TACAGGAGATCTCAGAGTCGCGAAA--T-C-AACGACATTATT-GCAGAAA-C--AAGTATTGGTGCAACAAAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GTATATTCA---TAGACAAGTCTGCTGTTTTGTAATGACCAATAGATGG---TAC-TTA----GAA---AGATT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTT-CCTAGTTTTCGACAGATATTCGCCATCCAGCACAAAAC-GTATCAC-ATGCTCT
gi|140911                     : TTCTGTACTGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGTGAAA--T-C-AACGTCATTATT-GCAGAA--G--AAGTATTATTGCGACATTACTCAAATCA-AC--------TAACAT-A--CAACTAA-GTATATTCA---TAGACAAGTCTGCTGTTCTGTTATGGCCAATAGATGG---TAC-TTG----TAA---AGATT-ATTTTTAAAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATACGCCATTCA--ACAAAAATGTATTAC-ATACTCT
gi|140912                     : TTCAGTACCAATATCATTGTTTACTGA-TACAGGAGATCTCTGTATTGCGAAA--TTC-AACGACATTATT-GCAGAAA-T--AAGTATTGACGCAACAATACTCAAATCA-AC--------TAACAG-A--CAACTTA-GCATATTCA---TAGACAAATCTGCTGTTTTGTAATGGTTAATTGATGG---AAC-TTA----GAA---AGATT-ATTTTATGAACATTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAGCAAAAAAA-GTATCACAATGCTCT
gi|140913                     : TTCAGTACTGACATCATTGTTCACTGA-TACAGGAGATCTCAGAATCGCGAAA--T-C-AACAAAATTATT-GCAGAAA-A--AAGAATTGGTGCAACATAACTAAAATCA-AT--------TAACAG-A--CA--TAATGCATATTTA---TAGACTAGCCTGCTGTTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTAAGAATTTTTAGCTC---TACATA-GATACTAAGATGTTTACCTAGTTTTCGGTAGATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGC
gi|140914                     : TTCAGTACCGACATCATTGTTTTCTGA-TACAGGAGATCACAGAATCGCGAAAAAT-C-AACGACATTATT-GCAGAAA-G--AAGTATAGGTGCGGTATAACTCATATCA-TC--------TAACAT-A--CAACTAA-GCATATTCATATTAAACAAGTCTGCTGTTCTGTAATGGTCAATAAATGG---TAC-TTG----GAA---AGATTAATTTTGAGAACTTTTAGGTCTAATACGTA-GAAACTAAGAAGTTTATCTAGTTGACAACCGATATTCGCCATTCAACACAAGA
gi|140915                     : TTCAGTATTGACATCATTG----CTAA-TACAGGAGATCTCAGAATCACCATA--T-C-TACGACATTATT-GCAGAAA-G--AAGTATTGTCGCGACATAATTCAAATCA-AT--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTATTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTGAGAACTTTTAGG-----TACATA-GAAACTAAGATGTGTACCTAGTTTTCCAATGATATTTGCCA------ACAAAAATGTATAAC-ATGCTCT
gi|140916                     : TTCAGTACCGACATCATTGTTTACAGAATACAGGAGGTCATAAAATTGCGAAA--A-C-AAAGACATTATT-GCAGAAA-G--CATGATTGGTGCGACATTACTCAAATTA-AC--------TTACAG-A--AAACTAA-GTATATTAA---TAGACAAGTCTGCTGTTCTGTAATGGTCAATAGATGA---CACACTG----G-A---AGGTT-ATTTTGAGAATTTTAAGGTCTTCTA-ATATGAAACGAAGATGCGTACCTAGTTTTTGACAGATATTCACCATTCAGCATGAAAC-GTATCAT-ATGCTCT
gi|140917                     : TTCAGAACCGACATCATTGTTAACTGA-TACAGGAGATCACAGAATCGCGAAA--TTC-AACAACATTATT-GCAGAAACGC-GACTATTGGTGCGACAAAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATTTTCA---TAGACAAGT
gi|140918                     : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGCAATA--T-C-AACAACATTATT-GCAGAAA-G--AAGTATTAGTGCGACGGAACTCAAATCA-AT--------TAACAG-
gi|140919                     :     GTACTGACATCATTATTTACAGA-TACAAGAGATCTCAGAATTGTGAAA--T-C-AACGACATAACT-GCAGAAA-G--AAGTATTAGAGCGACATTACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTCTAAACTGGCCAATAGAT-G---TCT-TTG----GAA---ATATT-ATTTTGAGAACTTTAAGGTCTAATACATA-GAAACTAAGATG-TTACCTTGTTTTTGACAGATATTTGCCATTCAGCACAAAAT-GTATCAC-ATGCTCT
gi|140920                     :     GTACCGACATCATTGTTTACAGA-TACAGGAGACCTCAGAATTGCGAAA--T-C-AACGGCATTACT-GCAGAAA-G--A-TTATTGGAGCGACATAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAATCTGCTGTTCTGTAATGGCCAATAGATG--------TT------AA---ATATT-ATTTTGAGAACTTAAAGGTCTAATACATA-GCTACTAAGATGTTTACCTAGTTATCGACAGATATTCGCCATTCAGAACAAAAT-TTATCAC-ATGCTCT
gi|140921                     :     GTACCGACATTATTGGTTACTGA-TACATGAAATCTCAGAATCGTGAAA--T-C-AACGACAGTAGTAACAGACA-ACTAAGTAT
gi|140921                     :                                                                                                          AAATCA-ACGACAGTAGTAACAG-A--CAACTAA-GTATATTCA---TATACA----TGTTGTTCTGTAATGGCCAATAGATGattcatatacatgttgttctgtaatggccaatagatg
gi|140922                     :                                                  gtaccgacattattggttactgatacatgaaatctcagaatcgtgCGGCATAA---AAATGACGC--------TAA-AT-ATTCAATCAA-TCA-AT-CA---TAGACAAGTCTGCTGTTTTGTAATGGTCAATAGATGG---TAC-TTA----GAA---AGGTT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTGAGATGTTTACCTAGTTTTTGACAAATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGCTCT
gi|140923                     :                                                                                                         CAAATAA-A----------GACAGGA--CAAC--A-GCATATTCA---TAGACAAATCTGCTTTTCTGCAATGGCTAATAGATGG---TAT-TTG----GAA---ATATT-ATTTTGTGAACTTTAAGGTCTAATAAATA-GAAACAAAGATGTGTACCTAGTTTTCGACAGATATTCGCCATTCAGCACAAAAC-GTATCAC-ATGGTCT
gi|140924                     :                                                                                                             TCA-AT--------TAACAG-A--CAATTAA-GCATATTCA---TAGACCATTCTGCTGTTTTGTAATGACCAATAGATGG---TAC-TTA----GTA---ATATT-TTTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTCCCTAGTTTTCGACAGATATTCGATACTCAACACAAAAA-TTATCAA-A-GCTCT
gi|140925                     :                                                                                                                            AACAG-A--CAACTAA-CCATATT-A---TAGACAAGTCTGCTGTTCTGCATTGGCCAATAGATAA---TAC-TTC----AA-------TT-ATTTTGAGAACTTCTAGGTCTTATACACA-GAAAACAAGATGTGTACCTATTTTTCTGCAGATATTCACCATTCAGCACAAAAA-GTATCAC-ATGCTCT
gi|140926                     :                                                                                                                                                                            GTCATGAC-AAGAGAGGGGAATAC-TTATTCTGAAGTCAGA---ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGCGTATCTAGTTTTCGACCGATATGCGCCATTCAGCACGATAA-GTATCAC-ATGCTCT
gi|140927                     :                                                                                                                                                                                                                                             AATACATA-GAAACTTAGATATTTTCCTAGTTTTCGACAGATATTCGCTATTCAGCACAAAAA-GTATCAC-ATGCTTT


blockSeqs                     :                            A                         AA T .            A       CGC                             C  GACAGTAG      G TT       T         TAT                                     GAA   A  ATTCT   GTC     A                             T                                                      T       A
blockSeqs                     :                            .                         .  T .            .       ACT                             .  .             . .        .         .                                       .     .  A       .       .                             .                                                      T       .
blockSeqs                     :                            .                         .  . .            .       C                               .  .             . .        .         .                                       .     .  G       .       .                             .                                                      .       .
blockSeqs                     :                            .                         .  . .            .       G                               .  .             . .        .         .                                       .     .  A       .       .                             .                                                      .       .
blockSeqs                     :                            .                         .  . .            .       T                               .  .             . .        .         .                                       .     .  G       .       .                             .                                                      .       .
blockSeqs                     :                            .                         .  . .            .       A                               .  .             . .        .         .                                       .     .  G       .       .                             .                                                      .       .
blockSeqs                     :                            .                         .  . .            .       G                               .  .             . .        .         .                                       .     .  G       .       .                             .                                                      .       .
blockSeqs                     :                            .                         .  . .            .       G                               .  .             . .        .         .                                       .     .  G       .       .                             .                                                      .       .
blockSeqs                     :                            .                         .  . .            .       G                               .  .             . .        .         .                                       .     .  G       .       .                             .                                                      .       .
blockSeqs                     :                            .                         .  . .            .       G                               .  .             . .        .         .                                       .     .  A       .       .                             .                                                      .       .
blockSeqs                     :                            .                         .  . .            .       G                               .  .             . .        .         .                                       .     .  G       .       .                             .                                                      .       .
blockSeqs                     :                            .                         .  . .            .       G                               .  .             . .        .         .                                       .     .  A       .       .                             .                                                      .       .
blockSeqs                     :                                                                                                                .  .             . .        .         .                                       .     .  C       .       .                             .                                                      .       .
blockSeqs                     :                                                                                                                .  .             . .        .         .                                       .     .  .       .       .                             .                                                      .       .
blockSeqs                     :                                                                                                                .  .             . .        .         .                                                                                              .                                                               
blockSeqs                     :                                                                                                                                 .                                                                                                                                                                                   


blockSeqCons                  : 
originalCons                  : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGCGAAA--T-C-AACGACATTATT-GCAGAAA-G--AAGTATTGGTGCGACATAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGCTCT
finalCons                     : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGCGAAA--T-C-AACGACATTATT-GCAGAAA-G--AAGTATTGGTGCGACATAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGCTCT





Alignments
lowQualScore                  :                            3                         44 6 3            3       8888                0           2  99999999      2 33       2         444                                     444   2  77777   444     2                             2                                                      5       2       
lowQualScore                  :                            .                         .. . .            .       ....                .           .  ........      . ..       .         ...                                     ...   .  .....   ...     .                             .                                                      .       .       
lowQualScore                  :                            1                         22 2 1            1       6666                8           5  11111111      4 44       5         444                                     777   7  11111   777     7                             5                                                      3       7       
consensus                     : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGCGAAA--T-C-AACGACATTATT-GCAGAAA-G--AAGTATTGGTGCGACATAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGCTCT
Reference ( family-821 )      : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGCGAAA--T-C-AACGACATTATT-GCAGAAA-G--AAGTATTGGTGCGACATAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGCTCT
gi|140909                     : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATTGCGAAA--T-TTAACGACATTATT-GCAGAAA-T--AAGTATTGGTGCTACAAAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTTTGTAATGGTCAACAGGTGG---TAC-TTA----GAA---AGATT-ATTTTGAGAACTTTCAGGCCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAACACAAAAA-GTACCAC-ATGCTCT
gi|140910                     : TTCAGTACTGACATCATTATTTACTGA-TACAGGAGATCTCAGAGTCGCGAAA--T-C-AACGACATTATT-GCAGAAA-C--AAGTATTGGTGCAACAAAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GTATATTCA---TAGACAAGTCTGCTGTTTTGTAATGACCAATAGATGG---TAC-TTA----GAA---AGATT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTT-CCTAGTTTTCGACAGATATTCGCCATCCAGCACAAAAC-GTATCAC-ATGCTCT
gi|140911                     : TTCTGTACTGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGTGAAA--T-C-AACGTCATTATT-GCAGAA--G--AAGTATTATTGCGACATTACTCAAATCA-AC--------TAACAT-A--CAACTAA-GTATATTCA---TAGACAAGTCTGCTGTTCTGTTATGGCCAATAGATGG---TAC-TTG----TAA---AGATT-ATTTTTAAAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATACGCCATTCA--ACAAAAATGTATTAC-ATACTCT
gi|140912                     : TTCAGTACCAATATCATTGTTTACTGA-TACAGGAGATCTCTGTATTGCGAAA--TTC-AACGACATTATT-GCAGAAA-T--AAGTATTGACGCAACAATACTCAAATCA-AC--------TAACAG-A--CAACTTA-GCATATTCA---TAGACAAATCTGCTGTTTTGTAATGGTTAATTGATGG---AAC-TTA----GAA---AGATT-ATTTTATGAACATTTAGGTCTAATACATA-GAAACTAAGATGTTTACCTAGTTTTCGACAGATATTCGCCATTCAGCAAAAAAA-GTATCACAATGCTCT
gi|140913                     : TTCAGTACTGACATCATTGTTCACTGA-TACAGGAGATCTCAGAATCGCGAAA--T-C-AACAAAATTATT-GCAGAAA-A--AAGAATTGGTGCAACATAACTAAAATCA-AT--------TAACAG-A--CA--TAATGCATATTTA---TAGACTAGCCTGCTGTTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTAAGAATTTTTAGCTC---TACATA-GATACTAAGATGTTTACCTAGTTTTCGGTAGATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGC
gi|140914                     : TTCAGTACCGACATCATTGTTTTCTGA-TACAGGAGATCACAGAATCGCGAAAAAT-C-AACGACATTATT-GCAGAAA-G--AAGTATAGGTGCGGTATAACTCATATCA-TC--------TAACAT-A--CAACTAA-GCATATTCATATTAAACAAGTCTGCTGTTCTGTAATGGTCAATAAATGG---TAC-TTG----GAA---AGATTAATTTTGAGAACTTTTAGGTCTAATACGTA-GAAACTAAGAAGTTTATCTAGTTGACAACCGATATTCGCCATTCAACACAAGA
gi|140915                     : TTCAGTATTGACATCATTG----CTAA-TACAGGAGATCTCAGAATCACCATA--T-C-TACGACATTATT-GCAGAAA-G--AAGTATTGTCGCGACATAATTCAAATCA-AT--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTATTCTGTAATGGCCAATAGATGG---TAC-TTG----GAA---AGATT-ATTTTGAGAACTTTTAGG-----TACATA-GAAACTAAGATGTGTACCTAGTTTTCCAATGATATTTGCCA------ACAAAAATGTATAAC-ATGCTCT
gi|140916                     : TTCAGTACCGACATCATTGTTTACAGAATACAGGAGGTCATAAAATTGCGAAA--A-C-AAAGACATTATT-GCAGAAA-G--CATGATTGGTGCGACATTACTCAAATTA-AC--------TTACAG-A--AAACTAA-GTATATTAA---TAGACAAGTCTGCTGTTCTGTAATGGTCAATAGATGA---CACACTG----G-A---AGGTT-ATTTTGAGAATTTTAAGGTCTTCTA-ATATGAAACGAAGATGCGTACCTAGTTTTTGACAGATATTCACCATTCAGCATGAAAC-GTATCAT-ATGCTCT
gi|140917                     : TTCAGAACCGACATCATTGTTAACTGA-TACAGGAGATCACAGAATCGCGAAA--TTC-AACAACATTATT-GCAGAAACGC-GACTATTGGTGCGACAAAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATTTTCA---TAGACAAGT
gi|140918                     : TTCAGTACCGACATCATTGTTTACTGA-TACAGGAGATCTCAGAATCGCAATA--T-C-AACAACATTATT-GCAGAAA-G--AAGTATTAGTGCGACGGAACTCAAATCA-AT--------TAACAG-
gi|140919                     :     GTACTGACATCATTATTTACAGA-TACAAGAGATCTCAGAATTGTGAAA--T-C-AACGACATAACT-GCAGAAA-G--AAGTATTAGAGCGACATTACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAGTCTGCTGTTCTAAACTGGCCAATAGAT-G---TCT-TTG----GAA---ATATT-ATTTTGAGAACTTTAAGGTCTAATACATA-GAAACTAAGATG-TTACCTTGTTTTTGACAGATATTTGCCATTCAGCACAAAAT-GTATCAC-ATGCTCT
gi|140920                     :     GTACCGACATCATTGTTTACAGA-TACAGGAGACCTCAGAATTGCGAAA--T-C-AACGGCATTACT-GCAGAAA-G--A-TTATTGGAGCGACATAACTCAAATCA-AC--------TAACAG-A--CAACTAA-GCATATTCA---TAGACAAATCTGCTGTTCTGTAATGGCCAATAGATG--------TT------AA---ATATT-ATTTTGAGAACTTAAAGGTCTAATACATA-GCTACTAAGATGTTTACCTAGTTATCGACAGATATTCGCCATTCAGAACAAAAT-TTATCAC-ATGCTCT
gi|140921                     :     GTACCGACATTATTGGTTACTGA-TACATGAAATCTCAGAATCGTGAAA--T-C-AACGACAGTAGTAACAGACA-ACTAAGTAT
gi|140921                     :                                                                                                          AAATCA-ACGACAGTAGTAACAG-A--CAACTAA-GTATATTCA---TATACA----TGTTGTTCTGTAATGGCCAATAGATGattcatatacatgttgttctgtaatggccaatagatg
gi|140922                     :                                                  gtaccgacattattggttactgatacatgaaatctcagaatcgtgCGGCATAA---AAATGACGC--------TAA-AT-ATTCAATCAA-TCA-AT-CA---TAGACAAGTCTGCTGTTTTGTAATGGTCAATAGATGG---TAC-TTA----GAA---AGGTT-ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTGAGATGTTTACCTAGTTTTTGACAAATATTCGCCATTCAGCACAAAAA-GTATCAC-ATGCTCT
gi|140923                     :                                                                                                         CAAATAA-A----------GACAGGA--CAAC--A-GCATATTCA---TAGACAAATCTGCTTTTCTGCAATGGCTAATAGATGG---TAT-TTG----GAA---ATATT-ATTTTGTGAACTTTAAGGTCTAATAAATA-GAAACAAAGATGTGTACCTAGTTTTCGACAGATATTCGCCATTCAGCACAAAAC-GTATCAC-ATGGTCT
gi|140924                     :                                                                                                             TCA-AT--------TAACAG-A--CAATTAA-GCATATTCA---TAGACCATTCTGCTGTTTTGTAATGACCAATAGATGG---TAC-TTA----GTA---ATATT-TTTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGTTTCCCTAGTTTTCGACAGATATTCGATACTCAACACAAAAA-TTATCAA-A-GCTCT
gi|140925                     :                                                                                                                            AACAG-A--CAACTAA-CCATATT-A---TAGACAAGTCTGCTGTTCTGCATTGGCCAATAGATAA---TAC-TTC----AA-------TT-ATTTTGAGAACTTCTAGGTCTTATACACA-GAAAACAAGATGTGTACCTATTTTTCTGCAGATATTCACCATTCAGCACAAAAA-GTATCAC-ATGCTCT
gi|140926                     :                                                                                                                                                                            GTCATGAC-AAGAGAGGGGAATAC-TTATTCTGAAGTCAGA---ATTTTGAGAACTTTTAGGTCTAATACATA-GAAACTAAGATGCGTATCTAGTTTTCGACCGATATGCGCCATTCAGCACGATAA-GTATCAC-ATGCTCT
gi|140927                     :                                                                                                                                                                                                                                             AATACATA-GAAACTTAGATATTTTCCTAGTTTTCGACAGATATTCGCTATTCAGCACAAAAA-GTATCAC-ATGCTTT