lowQualScore : 55555555 33 99999999999999999999999999999999999999999999999999999 111 11
lowQualScore : 3 3 88888888 7 6 0 11 5 55555555555555555555555555555555555555555555555555555 5 2 000 3 4 66 2 33 33
lowQualScore : . . ........ . . . .. . ..................................................... . . ... . . .. . .. ..
lowQualScore : 6 6 55555555 5 0 2 33 5 88888888888888888888888888888888888888888888888888888 9 1 222 2 2 22 9 44 44
consensus : AAC-AA-ACACCATTCC-G--ATACCACACGTGTTATCACCAATGAAACAACGTATCTATAGCATACCGGCCATTT---T--T-------ATA------T-TATA-----------------------TATATCGTATACCAACATTTTCCGGTTATAATTCACA--CTTTATATCCACGAGAACATCCAAA-TTTATAATAGCAGTTTTCAATGT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
Reference ( gi|136134 ) : AAC-AA-ACACCATTCC-ATAACAACATACGTGTTATCGCCAATGAAACAACGTATCTATAGCTAACCGGTCATTT---T--T-------ATA------TGTATA-----------------------TATATCATATATCAACATTTTCCGGTTATAATTCACA--TTTTACATCCACGAGAACATCCGAC-TTTATAATAGCAGTTTTCAATGT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136137 : AAC-AA-ACACCATTC---TTATATCACACGTGTTATCACCAATGAAACAACGTATCTATAGCATACCGGCCGTTG---T--T-------ATA------T-----------------------------ATAGCGTATATCGACATTTTCCGGT-ATAATTCACA--CTTTATATCCTCGAGAACATCCGAA-TCTTTTATAGCAGTTTTCAATCT-TGAAATGTGGTCCGGCCGACTATTC--TGTCAGTTTCCAATTGTTGGTGAA--CAGATTTTAAC
gi|136141 : AAC-AA-ACACTATTCCTATATCAA---ACGTGTTATCAACACTGAAACAACGTATCTATAGCATACCGGTCGTTG---T--T-------ATA------T-----------------------------ATAGCGTAAATCAACATTTTCCGGTTATAATTCACACATTTTTTATCAAAGA-AACATCCGAA-TTTATTATAGCAGTTTTCAATCT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTACAATTGTTGGTGAT--CAGATTTTAAC
gi|136139 : AAC-AA-ACACCATTCC-G--ATACCACGCGTGTTGTTAACAATGAAACAATGTATCTAAAGCATACCGACCATTT---T--T-------ATA------TA-AT------------------------TATATGGTATATCAACATTTTCCGGTTATAATTCACA--CTTTACATCCACGAGAACATCCAAA-TTTATAATAGCGGTTTCCAATGC-TGAAA-GTGGTCCGGTTGATTATTC--GGTCAGTTTCCAACTGTTGATGATGGTAAATTTT
gi|136136 : AAC-AA-ACACCATTCC-G--ATACCACACATGTTGTCACCAAT-AAACAACGTATCTATAGCATACCTGCCATTT---T--T-------ACA------T-----------------------------ATATCGTGAACCAACATATTCCGGTTATAATTCACAC-TTTTATGTCCACGAAAACATCTAAA-TTTTCAAAAGCAGTTTTCGATGT-TGACATGTGGTCCGGCCGACTATTT--GGTCAGTTATCAACTGTTGGTGAT--CAGATTTTAAC
gi|136140 : AAC-AA-ACACCATTCC-G--ATACCACACGTGTTATTACCAATAAAACTACGTTTCTATAGCGTACCGGCCATTT---T--TTATATAAATA------TATATACAAGGTCTTGTACAATTCCTTGATATATCGTATACCAACATTTTCCGGTTATAATTCACT--CTTTTTATCCACGAGAACATCCAAA-TTTATAATATAAGTTTTCAATGT-TGAAATGTGGTCCGGCCAACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--
gi|136142 : AAT-AA-ACACCATTCC-G--ATATCACACGTGTTATCACCAATTTAACAACGTATCTATAGCATACCGGCCATAT---A--T-------CCAAGGACTTGTATAATTCCTTGA--------------TATATCGTATACCAACATTTTCCGGTTATAATTCAC----------TCAACGAGAATATCCAAA-TTTATAATATACTTTTTCGATGT-TAAAATGTGGTCTGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136138 : AAC-AA-ACAACATTCC-G--ATGCCACAAGTGTTATCACCATTGAAACAACGTAAATATAGCATACATGCCATTT---T--T--------TA-------GT--------------------------TATATCTTTTATCAACATTTTCCGATTATAATTCACA--CTTTATATCCACGAGAACATCCAAA-TGTAAAAGAGCTGTTTTCAATGT-TGAAATGTGGTCCGGCCGCCTATTC--GGTCAATTTCAAACTATTGGTGAT--CAGATATTAAC
gi|136143 : AAC-AA-ACACTATTCC-G--ATACCACACGTGTTATCACCAATGGAACAACGTATCTGTAGCAAACCGGCCATTT---G--T-------ATA------T--ATG-----------------------TATATCGTATACCAACATATTTCGGTTATAATTCATG--CTTTATATGCACAAA-----------TTTATAATAGCGGTTTTCAATG--------------CGGTTGACCATTT--GGTCAGTTTCCAACTGTTGGTGAT--CAAATTTGAAC
gi|136135 : AACGAA-ACACCATTCC-G--ATACCACACGTGTTATCACCAATGAAACAACCTATATATAGCATTCCGGCCATTT---T--T------------------TATA-----------------------TTTATCCTATACCAACATTTTCCGGTTATAATTCACA--CTTTACAT-CA-GAAAACA
gi|136144 : AAC-AA-ACACCATTCCGAT-ACTAC--ACGTGTTATCACAAA--AAACggatacagattt
gi|136145 : AC-AATATACCATTCC-G--ATACCACACGTGTTATCACCAATAAAACAATGTATCTAT-----ATCG-----------------------------------------------------------TATACCA-------ACAGTTTCCGGTTATAAATCACA--CTTTTTATCCACGAGAACATCCAAA-TTTATCATA-TAGGTTTATATGT-TGAAATGTGGTCCGGCCGACTTTTCGTGATCAATTTTTTAC----GAGGGT--CAATTTTTAAC
gi|136146 : ACCATTCC-G--ATTTCACACGTGTTATCACAAATGATA-AA-------ATAGCATACTGGCCATTT----------------G------TTTATA-----------------------TTTATCCTATACCAATATTTTCCAGTTATAATTCACA--CTTTATATCCACGAGAACATCCAAA-TTCATAATAGCAGTTTTCAATGT-TGAAATCTGG-CCAGTC-------C--GGTCAGTTTCCAACTGTTGGTGTT--CAGATTTTAAC
gi|136147 : TGTTATCACCATTGAAACAACATATCTATAGCATACTGACCATTTATATAAT-------ATA------TATATA-----------------------TATATCATATACCAAGATTTTCCAGTTATAATTCACA--CTTTATATCGACGAGAACATCCAAA-TTTATAATAGAGATGTTCAATGT-TAAAACGTGGTCCGGCTGACTATTC--GGTCAGTTTCCAACGGTTAGTAAT--CAGAGTTTAAC
gi|136148 : T---T--T-------AT---------TATA------------------------ATATCGTATACCAACATTTTCCGTTTATAATTCACA--CTTTATATCCACGAAAGCAT-CAACATTTATAATAGCAGTTTTCAATGT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136149 : aTATAATTCACA--TTTTACATCCACGAGAACATCCAAA-TTTATAATAGCAGATTTCAATGT-TGAAATGTGGCTCGGCCGACTATTC--GGTCAGTTTCAAACTGTTGGTGAT--CAGATTTTAAC
gi|136150 : ATGTCTTAAAAATGATTCGGCCGACTATTC--TGTCAGTTTTCAACTGTTGATGAT--CAGATATTAAC
gi|136152 : CCGGTCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136151 : CCGGTAGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
Alignments
lowQualScore : 666666666666666666666666666666666666666666666666666666666666
lowQualScore : 3 3 44 44 444444444444444444444444444444444444444444444444444444444444 33 2 444 2 33 33
lowQualScore : . . .. .. ............................................................ .. . ... . .. ..
lowQualScore : 3 3 22 22 888888888888888888888888888888888888888888888888888888888888 77 7 777 7 22 22
consensus : AAC-AA-ACACCATTCCG--ATACCACACGTGTTATCACCAATGAAACAACGTATCTATA--GCATACCGGCCATT-T----------T--T------ATAT-TAT------A-----------------------TATATCGTATACCAACATTTTCCGGTTATAATTCACAC--TTT-ATATCCACGAGAAC---ATCCAAATTTATAATAGCAGTTTTCAATGT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
Reference ( family-819 ) : AAC-AA-ACACCATTCCG--ATACCACACGTGTTATCACCAATGAAACAACGTATCTATA--GCATACCGGCCATT-T----------T--T------ATAT-TAT------A-----------------------TATATCGTATACCAACATTTTCCGGTTATAATTCACAC--TTT-ATATCCACGAGAAC---ATCCAAATTTATAATAGCAGTTTTCAATGT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136134 : AAC-AA-ACACCATTCCATAACAACATACGTGTTATCGCCAATGAAACAACGTATCTATA--GCTAACCGGTCATT-T----------T--T------ATATGTAT------A-----------------------TATATCATATATCAACATTTTCCGGTTATAATTCACAT--TTT-ACATCCACGAGAAC---ATCCGACTTTATAATAGCAGTTTTCAATGT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136135 : AACGAA-ACACCATTCCG--ATACCACACGTGTTATCACCAATGAAACAACCTATATATA--GCATTCCGGCCATT-T----------T------------T-TAT------A-----------------------TTTATCCTATACCAACATTTTCCGGTTATAATTCACAC--TTT-ACAT-CA-GAAAACAGGATACAGATTT
gi|136136 : AAC-AA-ACACCATTCCG--ATACCACACATGTTGTCACCAAT-AAACAACGTATCTATA--GCATACCTGCCATT-T----------T--T------ACAT-----------------------------------ATATCGTGAACCAACATATTCCGGTTATAATTCACAC--TTTTATGTCCACGAAAAC---ATCTAAATTTTCAAAAGCAGTTTTCGATGT-TGACATGTGGTCCGGCCGACTATTT--GGTCAGTTATCAACTGTTGGTGAT--CAGATTTTAAC
gi|136137 : AAC-AA-ACACCATTCTT--ATATCACACGTGTTATCACCAATGAAACAACGTATCTATA--GCATACCGGCCGTT------------------------GT-TAT------A-----------------------TATAGCGTATATCGACATTTTCCGGT-ATAATTCACAC--TTT-ATATCCTCGAGAAC---ATCCGAATCTTTTATAGCAGTTTTCAATCT-TGAAATGTGGTCCGGCCGACTATTC--TGTCAGTTTCCAATTGTTGGTGAA--CAGATTTTAAC
gi|136138 : AAC-AA-ACAACATTCCG--ATGCCACAAGTGTTATCACCATTGAAACAACGTAAATATA--GCATACATGCCATT-T----------T--T-------TAG-T--------------------------------TATATCTTTTATCAACATTTTCCGATTATAATTCACAC--TTT-ATATCCACGAGAAC---ATCCAAATGTAAAAGAGCTGTTTTCAATGT-TGAAATGTGGTCCGGCCGCCTATTC--GGTCAATTTCAAACTATTGGTGAT--CAGATATTAAC
gi|136139 : AAC-AA-ACACCATTCCG--ATACCACGCGTGTTGTTAACAATGAAACAATGTATCTAAA--GCATACCGACCATT-T----------T--T------ATAT-AAT------------------------------TATATGGTATATCAACATTTTCCGGTTATAATTCACAC--TTT-ACATCCACGAGAAC---ATCCAAATTTATAATAGCGGTTTCCAATGC-TGAAA-GTGGTCCGGTTGATTATTC--GGTCAGTTTCCAACTGTTGATGATGGTAAATTTT
gi|136140 : AAC-AA-ACACCATTCCG--ATACCACACGTGTTATTACCAATAAAACTACGTTTCTATA--GCGTACCGGCCATTTT----------T--TATATAAATATATAT------ACAAGGTCTTGTACAATTCCTTGATATATCGTATACCAACATTTTCCGGTTATAATTCACTC--TTT-TTATCCACGAGAAC---ATCCAAATTTATAATATAAGTTTTCAATGT-TGAAATGTGGTCCGGCCAACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--
gi|136141 : AAC-AA-ACACTATTCCT--ATATCAAACGTGTTATCAACACTGAAACAACGTATCTATA--GCATACCGGTCGTT------------------------GT-TAT------A-----------------------TATAGCGTAAATCAACATTTTCCGGTTATAATTCACACATTTT-TTATCAAAGA-AAC---ATCCGAATTTATTATAGCAGTTTTCAATCT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTACAATTGTTGGTGAT--CAGATTTTAAC
gi|136142 : AAT-AA-ACACCATTCCG--ATATCACACGTGTTATCACCAATTTAACAACGTATCTATA--GCATACCGGCCATA-TATCCAAGGACT--T------GTAT-AATTCCTTGA-----------------------TATATCGTATACCAACATTTTCCGGTTATAATTCAC-----------TCAACGAGAAT---ATCCAAATTTATAATATACTTTTTCGATGT-TAAAATGTGGTCTGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136143 : AAC-AA-ACACTATTCCG--ATACCACACGTGTTATCACCAATGGAACAACGTATCTGTA--GCAAACCGGCCATT-T----------G--T------ATAT--AT------G-----------------------TATATCGTATACCAACATATTTCGGTTATAATTCATGC--TTT-ATATGCAC-------------AAATTTATAATAGCGGTTTTCAATG--------------CGGTTGACCATTT--GGTCAGTTTCCAACTGTTGGTGAT--CAAATTTGAAC
gi|136144 : AAC-AA-ACACCATTCCG--ATACTACACGTGTTATCACAAA--AAAC
gi|136145 : AC-AATATACCATTCCG--ATACCACACGTGTTATCACCAATAAAACAATGTATCTATATCGTATACCAACAGTT-T----------
gi|136145 : -TAT------C-----------------------TATATCGTATACCAACAGTTTCCGGTTATAAATCACAC--TTT-TTATCCACGAGAAC---ATCCAAATTTATCATA-TAGGTTTATATGT-TGAAATGTGGTCCGGCCGACTTTTCGTGATCAATTTTTTAC----GAGGGT--CAATTTTTAACccggttataaatcacactttttatccacgagaacatccaaatttatcatataggtttatatgttgaaatgtggtccggccgacttttcgtgatcaattttttacgagggtcaatttttaac
gi|136146 : acaatataccattccgataccacacgtgttatcaccaataaaacaatgACCATTCCG--ATTTCACACGTGTTATCACAAATGATA-AA-------ATA--GCATACTGGCCATT-T----------G--T---------T-TAT------A-----------------------TTTATCCTATACCAATATTTTCCAGTTATAATTCACAC--TTT-ATATCCACGAGAAC---ATCCAAATTCATAATAGCAGTTTTCAATGT-TGAAATCTGG-CCAGTC-------C--GGTCAGTTTCCAACTGTTGGTGTT--CAGATTTTAAC
gi|136147 : TGTTATCACCATTGAAACAACATATCTATA--GCATACTGACCATT-TATA-------TAAT------ATATATAT------A-----------------------TATATCATATACCAAGATTTTCCAGTTATAATTCACAC--TTT-ATATCGACGAGAAC---ATCCAAATTTATAATAGAGATGTTCAATGT-TAAAACGTGGTCCGGCTGACTATTC--GGTCAGTTTCCAACGGTTAGTAAT--CAGAGTTTAAC
gi|136148 : TAT-TAT------A------------------------ATATCGTATACCAACATTTTCCGTTTATAATTCACAC--TTT-ATATCCACGAAAGC---ATCAACATTTATAATAGCAGTTTTCAATGT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136149 : attTATAATTCACAT--TTT-ACATCCACGAGAAC---ATCCAAATTTATAATAGCAGATTTCAATGT-TGAAATGTGGCTCGGCCGACTATTC--GGTCAGTTTCAAACTGTTGGTGAT--CAGATTTTAAC
gi|136150 : ATGTCTTAAAAATGATTCGGCCGACTATTC--TGTCAGTTTTCAACTGTTGATGAT--CAGATATTAAC
gi|136151 : CCGGTAGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136152 : CCGGTCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
Alignments
lowQualScore : 666666666666666666666666666666666666666666666666666666666666
lowQualScore : 3 3 44 44 444444444444444444444444444444444444444444444444444444444444 33 2 444 2 33 33
lowQualScore : . . .. .. ............................................................ .. . ... . .. ..
lowQualScore : 3 3 22 22 888888888888888888888888888888888888888888888888888888888888 77 7 777 7 22 22
consensus : AAC-AA-ACACCATTCCG--ATACCACACGTGTTATCACCAATGAAACAACGTATCTATA--GCATACCGGCCATT-T----------T--T------ATAT-TAT------A-----------------------TATATCGTATACCAACATTTTCCGGTTATAATTCACAC--TTT-ATATCCACGAGAAC---ATCCAAATTTATAATAGCAGTTTTCAATGT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
Reference ( family-819 ) : AAC-AA-ACACCATTCCG--ATACCACACGTGTTATCACCAATGAAACAACGTATCTATA--GCATACCGGCCATT-T----------T--T------ATAT-TAT------A-----------------------TATATCGTATACCAACATTTTCCGGTTATAATTCACAC--TTT-ATATCCACGAGAAC---ATCCAAATTTATAATAGCAGTTTTCAATGT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136134 : AAC-AA-ACACCATTCCATAACAACATACGTGTTATCGCCAATGAAACAACGTATCTATA--GCTAACCGGTCATT-T----------T--T------ATATGTAT------A-----------------------TATATCATATATCAACATTTTCCGGTTATAATTCACAT--TTT-ACATCCACGAGAAC---ATCCGACTTTATAATAGCAGTTTTCAATGT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136135 : AACGAA-ACACCATTCCG--ATACCACACGTGTTATCACCAATGAAACAACCTATATATA--GCATTCCGGCCATT-T----------T------------T-TAT------A-----------------------TTTATCCTATACCAACATTTTCCGGTTATAATTCACAC--TTT-ACAT-CA-GAAAACAGGATACAGATTT
gi|136136 : AAC-AA-ACACCATTCCG--ATACCACACATGTTGTCACCAAT-AAACAACGTATCTATA--GCATACCTGCCATT-T----------T--T------ACAT-----------------------------------ATATCGTGAACCAACATATTCCGGTTATAATTCACAC--TTTTATGTCCACGAAAAC---ATCTAAATTTTCAAAAGCAGTTTTCGATGT-TGACATGTGGTCCGGCCGACTATTT--GGTCAGTTATCAACTGTTGGTGAT--CAGATTTTAAC
gi|136137 : AAC-AA-ACACCATTCTT--ATATCACACGTGTTATCACCAATGAAACAACGTATCTATA--GCATACCGGCCGTT------------------------GT-TAT------A-----------------------TATAGCGTATATCGACATTTTCCGGT-ATAATTCACAC--TTT-ATATCCTCGAGAAC---ATCCGAATCTTTTATAGCAGTTTTCAATCT-TGAAATGTGGTCCGGCCGACTATTC--TGTCAGTTTCCAATTGTTGGTGAA--CAGATTTTAAC
gi|136138 : AAC-AA-ACAACATTCCG--ATGCCACAAGTGTTATCACCATTGAAACAACGTAAATATA--GCATACATGCCATT-T----------T--T-------TAG-T--------------------------------TATATCTTTTATCAACATTTTCCGATTATAATTCACAC--TTT-ATATCCACGAGAAC---ATCCAAATGTAAAAGAGCTGTTTTCAATGT-TGAAATGTGGTCCGGCCGCCTATTC--GGTCAATTTCAAACTATTGGTGAT--CAGATATTAAC
gi|136139 : AAC-AA-ACACCATTCCG--ATACCACGCGTGTTGTTAACAATGAAACAATGTATCTAAA--GCATACCGACCATT-T----------T--T------ATAT-AAT------------------------------TATATGGTATATCAACATTTTCCGGTTATAATTCACAC--TTT-ACATCCACGAGAAC---ATCCAAATTTATAATAGCGGTTTCCAATGC-TGAAA-GTGGTCCGGTTGATTATTC--GGTCAGTTTCCAACTGTTGATGATGGTAAATTTT
gi|136140 : AAC-AA-ACACCATTCCG--ATACCACACGTGTTATTACCAATAAAACTACGTTTCTATA--GCGTACCGGCCATTTT----------T--TATATAAATATATAT------ACAAGGTCTTGTACAATTCCTTGATATATCGTATACCAACATTTTCCGGTTATAATTCACTC--TTT-TTATCCACGAGAAC---ATCCAAATTTATAATATAAGTTTTCAATGT-TGAAATGTGGTCCGGCCAACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--
gi|136141 : AAC-AA-ACACTATTCCT--ATATCAAACGTGTTATCAACACTGAAACAACGTATCTATA--GCATACCGGTCGTT------------------------GT-TAT------A-----------------------TATAGCGTAAATCAACATTTTCCGGTTATAATTCACACATTTT-TTATCAAAGA-AAC---ATCCGAATTTATTATAGCAGTTTTCAATCT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTACAATTGTTGGTGAT--CAGATTTTAAC
gi|136142 : AAT-AA-ACACCATTCCG--ATATCACACGTGTTATCACCAATTTAACAACGTATCTATA--GCATACCGGCCATA-TATCCAAGGACT--T------GTAT-AATTCCTTGA-----------------------TATATCGTATACCAACATTTTCCGGTTATAATTCAC-----------TCAACGAGAAT---ATCCAAATTTATAATATACTTTTTCGATGT-TAAAATGTGGTCTGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136143 : AAC-AA-ACACTATTCCG--ATACCACACGTGTTATCACCAATGGAACAACGTATCTGTA--GCAAACCGGCCATT-T----------G--T------ATAT--AT------G-----------------------TATATCGTATACCAACATATTTCGGTTATAATTCATGC--TTT-ATATGCAC-------------AAATTTATAATAGCGGTTTTCAATG--------------CGGTTGACCATTT--GGTCAGTTTCCAACTGTTGGTGAT--CAAATTTGAAC
gi|136144 : AAC-AA-ACACCATTCCG--ATACTACACGTGTTATCACAAA--AAAC
gi|136145 : AC-AATATACCATTCCG--ATACCACACGTGTTATCACCAATAAAACAATGTATCTATATCGTATACCAACAGTT-T----------
gi|136145 : -TAT------C-----------------------TATATCGTATACCAACAGTTTCCGGTTATAAATCACAC--TTT-TTATCCACGAGAAC---ATCCAAATTTATCATA-TAGGTTTATATGT-TGAAATGTGGTCCGGCCGACTTTTCGTGATCAATTTTTTAC----GAGGGT--CAATTTTTAACccggttataaatcacactttttatccacgagaacatccaaatttatcatataggtttatatgttgaaatgtggtccggccgacttttcgtgatcaattttttacgagggtcaatttttaac
gi|136146 : acaatataccattccgataccacacgtgttatcaccaataaaacaatgACCATTCCG--ATTTCACACGTGTTATCACAAATGATA-AA-------ATA--GCATACTGGCCATT-T----------G--T---------T-TAT------A-----------------------TTTATCCTATACCAATATTTTCCAGTTATAATTCACAC--TTT-ATATCCACGAGAAC---ATCCAAATTCATAATAGCAGTTTTCAATGT-TGAAATCTGG-CCAGTC-------C--GGTCAGTTTCCAACTGTTGGTGTT--CAGATTTTAAC
gi|136147 : TGTTATCACCATTGAAACAACATATCTATA--GCATACTGACCATT-TATA-------TAAT------ATATATAT------A-----------------------TATATCATATACCAAGATTTTCCAGTTATAATTCACAC--TTT-ATATCGACGAGAAC---ATCCAAATTTATAATAGAGATGTTCAATGT-TAAAACGTGGTCCGGCTGACTATTC--GGTCAGTTTCCAACGGTTAGTAAT--CAGAGTTTAAC
gi|136148 : TAT-TAT------A------------------------ATATCGTATACCAACATTTTCCGTTTATAATTCACAC--TTT-ATATCCACGAAAGC---ATCAACATTTATAATAGCAGTTTTCAATGT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136149 : attTATAATTCACAT--TTT-ACATCCACGAGAAC---ATCCAAATTTATAATAGCAGATTTCAATGT-TGAAATGTGGCTCGGCCGACTATTC--GGTCAGTTTCAAACTGTTGGTGAT--CAGATTTTAAC
gi|136150 : ATGTCTTAAAAATGATTCGGCCGACTATTC--TGTCAGTTTTCAACTGTTGATGAT--CAGATATTAAC
gi|136151 : CCGGTAGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136152 : CCGGTCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
blockSeqs : G T . TC TTTTATATAAATATATATACAAGGTCTTGTACAATTCCTTGA AT T AGG C GT GG
blockSeqs : . . . . TATCCAAGGACTTGTATAATTCCTTGA . . . . . .
blockSeqs : . . . . TATATAATATATATATA . . . . . .
blockSeqs : . . . . TTTATATAAT . . . . . .
blockSeqs : . . . . TGTATATATG . . . . . .
blockSeqs : . . . . TGTTTATA . . . . . .
blockSeqs : . . . . TTTTATA . . . . . .
blockSeqs : . . . . TTTACAT . . . . . .
blockSeqs : . . . . TTTTAGT . . . . . .
blockSeqs : . . . . GTTATA . . . . . .
blockSeqs : . . . . GTTATA . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : **
originalCons : AAC-AA-ACACCATTCCG--ATACCACACGTGTTATCACCAATGAAACAACGTATCTATA--GCATACCGGCCATT-T----------T--T------ATAT-TAT------A-----------------------TATATCGTATACCAACATTTTCCGGTTATAATTCACAC--TTT-ATATCCACGAGAAC---ATCCAAATTTATAATAGCAGTTTTCAATGT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
finalCons : AAC-AA-ACACCATTCCG--ATACCACACGTGTTATCACCAATGAAACAACGTATCTATA--GCATACCGGCCATT-T----------T--T------ATAT-TAT------A-----------------------TATATCGTATACCAACATTTTCCGGTTATAATTCACAC--TTT-ATATCCACGAGAAC---ATCCAAATTTATAATAGCAGTTTTCAATGT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
Alignments
lowQualScore : 666666666666666666666666666666666666666666666666666666666666
lowQualScore : 3 3 44 44 444444444444444444444444444444444444444444444444444444444444 33 2 444 2 33 33
lowQualScore : . . .. .. ............................................................ .. . ... . .. ..
lowQualScore : 3 3 22 22 888888888888888888888888888888888888888888888888888888888888 77 7 777 7 22 22
consensus : AAC-AA-ACACCATTCCG--ATACCACACGTGTTATCACCAATGAAACAACGTATCTATA--GCATACCGGCCATT-T----------T--T------ATAT-TAT------A-----------------------TATATCGTATACCAACATTTTCCGGTTATAATTCACAC--TTT-ATATCCACGAGAAC---ATCCAAATTTATAATAGCAGTTTTCAATGT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
Reference ( family-819 ) : AAC-AA-ACACCATTCCG--ATACCACACGTGTTATCACCAATGAAACAACGTATCTATA--GCATACCGGCCATT-T----------T--T------ATAT-TAT------A-----------------------TATATCGTATACCAACATTTTCCGGTTATAATTCACAC--TTT-ATATCCACGAGAAC---ATCCAAATTTATAATAGCAGTTTTCAATGT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136134 : AAC-AA-ACACCATTCCATAACAACATACGTGTTATCGCCAATGAAACAACGTATCTATA--GCTAACCGGTCATT-T----------T--T------ATATGTAT------A-----------------------TATATCATATATCAACATTTTCCGGTTATAATTCACAT--TTT-ACATCCACGAGAAC---ATCCGACTTTATAATAGCAGTTTTCAATGT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136135 : AACGAA-ACACCATTCCG--ATACCACACGTGTTATCACCAATGAAACAACCTATATATA--GCATTCCGGCCATT-T----------T------------T-TAT------A-----------------------TTTATCCTATACCAACATTTTCCGGTTATAATTCACAC--TTT-ACAT-CA-GAAAACAGGATACAGATTT
gi|136136 : AAC-AA-ACACCATTCCG--ATACCACACATGTTGTCACCAAT-AAACAACGTATCTATA--GCATACCTGCCATT-T----------T--T------ACAT-----------------------------------ATATCGTGAACCAACATATTCCGGTTATAATTCACAC--TTTTATGTCCACGAAAAC---ATCTAAATTTTCAAAAGCAGTTTTCGATGT-TGACATGTGGTCCGGCCGACTATTT--GGTCAGTTATCAACTGTTGGTGAT--CAGATTTTAAC
gi|136137 : AAC-AA-ACACCATTCTT--ATATCACACGTGTTATCACCAATGAAACAACGTATCTATA--GCATACCGGCCGTT------------------------GT-TAT------A-----------------------TATAGCGTATATCGACATTTTCCGGT-ATAATTCACAC--TTT-ATATCCTCGAGAAC---ATCCGAATCTTTTATAGCAGTTTTCAATCT-TGAAATGTGGTCCGGCCGACTATTC--TGTCAGTTTCCAATTGTTGGTGAA--CAGATTTTAAC
gi|136138 : AAC-AA-ACAACATTCCG--ATGCCACAAGTGTTATCACCATTGAAACAACGTAAATATA--GCATACATGCCATT-T----------T--T-------TAG-T--------------------------------TATATCTTTTATCAACATTTTCCGATTATAATTCACAC--TTT-ATATCCACGAGAAC---ATCCAAATGTAAAAGAGCTGTTTTCAATGT-TGAAATGTGGTCCGGCCGCCTATTC--GGTCAATTTCAAACTATTGGTGAT--CAGATATTAAC
gi|136139 : AAC-AA-ACACCATTCCG--ATACCACGCGTGTTGTTAACAATGAAACAATGTATCTAAA--GCATACCGACCATT-T----------T--T------ATAT-AAT------------------------------TATATGGTATATCAACATTTTCCGGTTATAATTCACAC--TTT-ACATCCACGAGAAC---ATCCAAATTTATAATAGCGGTTTCCAATGC-TGAAA-GTGGTCCGGTTGATTATTC--GGTCAGTTTCCAACTGTTGATGATGGTAAATTTT
gi|136140 : AAC-AA-ACACCATTCCG--ATACCACACGTGTTATTACCAATAAAACTACGTTTCTATA--GCGTACCGGCCATTTT----------T--TATATAAATATATAT------ACAAGGTCTTGTACAATTCCTTGATATATCGTATACCAACATTTTCCGGTTATAATTCACTC--TTT-TTATCCACGAGAAC---ATCCAAATTTATAATATAAGTTTTCAATGT-TGAAATGTGGTCCGGCCAACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--
gi|136141 : AAC-AA-ACACTATTCCT--ATATCAAACGTGTTATCAACACTGAAACAACGTATCTATA--GCATACCGGTCGTT------------------------GT-TAT------A-----------------------TATAGCGTAAATCAACATTTTCCGGTTATAATTCACACATTTT-TTATCAAAGA-AAC---ATCCGAATTTATTATAGCAGTTTTCAATCT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTACAATTGTTGGTGAT--CAGATTTTAAC
gi|136142 : AAT-AA-ACACCATTCCG--ATATCACACGTGTTATCACCAATTTAACAACGTATCTATA--GCATACCGGCCATA-TATCCAAGGACT--T------GTAT-AATTCCTTGA-----------------------TATATCGTATACCAACATTTTCCGGTTATAATTCAC-----------TCAACGAGAAT---ATCCAAATTTATAATATACTTTTTCGATGT-TAAAATGTGGTCTGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136143 : AAC-AA-ACACTATTCCG--ATACCACACGTGTTATCACCAATGGAACAACGTATCTGTA--GCAAACCGGCCATT-T----------G--T------ATAT--AT------G-----------------------TATATCGTATACCAACATATTTCGGTTATAATTCATGC--TTT-ATATGCAC-------------AAATTTATAATAGCGGTTTTCAATG--------------CGGTTGACCATTT--GGTCAGTTTCCAACTGTTGGTGAT--CAAATTTGAAC
gi|136144 : AAC-AA-ACACCATTCCG--ATACTACACGTGTTATCACAAA--AAAC
gi|136145 : AC-AATATACCATTCCG--ATACCACACGTGTTATCACCAATAAAACAATGTATCTATATCGTATACCAACAGTT-T----------
gi|136145 : -TAT------C-----------------------TATATCGTATACCAACAGTTTCCGGTTATAAATCACAC--TTT-TTATCCACGAGAAC---ATCCAAATTTATCATA-TAGGTTTATATGT-TGAAATGTGGTCCGGCCGACTTTTCGTGATCAATTTTTTAC----GAGGGT--CAATTTTTAACccggttataaatcacactttttatccacgagaacatccaaatttatcatataggtttatatgttgaaatgtggtccggccgacttttcgtgatcaattttttacgagggtcaatttttaac
gi|136146 : acaatataccattccgataccacacgtgttatcaccaataaaacaatgACCATTCCG--ATTTCACACGTGTTATCACAAATGATA-AA-------ATA--GCATACTGGCCATT-T----------G--T---------T-TAT------A-----------------------TTTATCCTATACCAATATTTTCCAGTTATAATTCACAC--TTT-ATATCCACGAGAAC---ATCCAAATTCATAATAGCAGTTTTCAATGT-TGAAATCTGG-CCAGTC-------C--GGTCAGTTTCCAACTGTTGGTGTT--CAGATTTTAAC
gi|136147 : TGTTATCACCATTGAAACAACATATCTATA--GCATACTGACCATT-TATA-------TAAT------ATATATAT------A-----------------------TATATCATATACCAAGATTTTCCAGTTATAATTCACAC--TTT-ATATCGACGAGAAC---ATCCAAATTTATAATAGAGATGTTCAATGT-TAAAACGTGGTCCGGCTGACTATTC--GGTCAGTTTCCAACGGTTAGTAAT--CAGAGTTTAAC
gi|136148 : TAT-TAT------A------------------------ATATCGTATACCAACATTTTCCGTTTATAATTCACAC--TTT-ATATCCACGAAAGC---ATCAACATTTATAATAGCAGTTTTCAATGT-TGAAATGTGGTCCGGCCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136149 : attTATAATTCACAT--TTT-ACATCCACGAGAAC---ATCCAAATTTATAATAGCAGATTTCAATGT-TGAAATGTGGCTCGGCCGACTATTC--GGTCAGTTTCAAACTGTTGGTGAT--CAGATTTTAAC
gi|136150 : ATGTCTTAAAAATGATTCGGCCGACTATTC--TGTCAGTTTTCAACTGTTGATGAT--CAGATATTAAC
gi|136151 : CCGGTAGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC
gi|136152 : CCGGTCGACTATTC--GGTCAGTTTCCAACTGTTGGTGAT--CAGATTTTAAC