lowQualScore : 4 1 111111 11 11 1 33333333 1111111111111 2222222222222222222222 111111 11 111111 111 22222222222222 111 2222222 2222222 1111 11111111 11 111111 1
lowQualScore : 0 3 88 6 5 2 4 6 6 0 0 1 0 6 222222 44 00 5 2 6 0 8888 0 44444444 2 444 6666 55 5 8888888888888 6666666666666666666666 444 1 555555 4 33 2 33 111111 0 44 5 1 111 4 5 3 3 00000000000000 3 0 44 3 0 1 000 6666666 55 3333333 4444 4 3 66666666 77777 44 6 11 3 666 666 555555 3 1 3 99 4 3 4 6 8 6
lowQualScore : . . .. . . . . . . . . . . . ...... .. .. . . . . .... . ........ . ... .... .. . ............. ...................... ... . ...... . .. . .. ...... . .. . . ... . . . . .............. . . .. . . . ... ....... .. ....... .... . . ........ ..... .. . .. . ... ... ...... . . . .. . . . . . .
lowQualScore : 0 5 00 5 2 8 0 5 2 5 1 8 7 7 888888 66 11 4 9 0 4 0000 1 99999999 9 222 3333 22 3 7777777777777 6666666666666666666666 777 5 666666 3 44 9 11 777777 2 22 8 2 111 1 5 9 1 55555555555555 3 2 66 3 4 4 000 5555555 00 6666666 1111 4 6 55555555 66666 66 7 22 6 444 444 555555 6 3 6 22 6 6 5 0 0 0
consensus : TTATG-TCTAGTCTTGTTGACTATATCAAAGAAAAGAACAGTGCTATTANTNCAAACTGGNCAANTACAGACATTATGTTCGGAAAT-AA-GA-G-TTT--GACNAAGTNTTGAATAAAATANTATTGATN--GCAAAAAA---AATTCA-TCTT--CA---ACCAN-AAA-TTA-----AA-----TAAAA-A--A---A--GA-ACTC-CGTTT---AACAA-A----CTTTAAACANCAT-ATTNNAAATCT----N-TATAATA--CAGAACGGTATATTGCAANAGTAAACTGT-AA----------TTTGGTA-GGA--TT-TGATGCTCTT---TGGGA-GG-TCTATAAA--CC-------TCTTG----TAA-TCT--A---AGATAT--AT-TTAT-TGATTCCCCTCCGGG-TTT--TGTGGTTAAATTGCTTTAAATATT-T---ATACA---ATCA-----CG-TACAGTAGAC-TTT-ATTCTT-CCAATCT-TT-TTTTCATACAATTATTATTATTAT
Reference ( gi|20930 ) : TTATGCTCTAGTCTTGTTGATTATATCAAAGAAAGGAACAGTGCTATTATTACAAACTGGTCAATTACTGATATTCTATTTGGAAAC-AA-GA-G-TTT--GACCCAGTGTTGAATAAACTATTATTGATA--ACAAAAAA---AACCCA-TCTT--CA---ACCAT-AAA-TTA-----AA-----TAAAA-A--A---A--GA-ACTC-TGTTT---AACAA-A----CTTTAAACATTAT-ATTCGAAATCT----T-TATAATA--CAGAAAGGTATATAGCAAAAGCAAACTTT-AA----------TTTGGTA-GGA--TT-TGATGCTCTT---TGGGA-GG-TCAATAAA--CC-------TCTTG----TAA-TCT--A---AGATAT--AT-TTAT-TGATTCCCCTCCGGG-TTT--TGTGGTTAAATTGCTTTAAATATT-T---ATACA---ATCA-----AG-TACAGTAGAC-TTT-GTTTTT-CCAATTT-TT-TTTTCATACAATTATCATTATTAT
gi|20931 : TTATG-TCTAATCTTGTTGACTATATCAAAGAAAAGAACAGTGCTATTATTACAAACTGGTCAATTACTGATATTCTATTTGGAAAC-AAAGA-G-TTT--GACCCAG-GTTGAATAAAATATTATTGATA--ACAAAAAA---AATC-A-TCTT--CA---ACCAT-AAA-TTA-----AA-----TAAAA----A---A--GA-ACTC-TGTTT---AACAA-A----CTTTAAACATTAT-ATTCGAAATCT----T-TATAACA--CAGAAAGATATATAGCAAAAGTAAACTTT-AA----------TTTGGTA-GGA--TT-TGATGCTCTT---TGGGA-GG-TCTATAAA--CC-------TCTTC----TAA-TCT--A---AGATAC--A--TTAA-TGATTTCCCTCCGGGTTTT--TGTGGTTAAATTGCTTCAAATA-T-T---ATACA---ATCA-----AGTTACAGTAGAC-TTG-ATCCTT-CCAATCT-TT-TTTTCATACAATTATTATTATTAT
gi|20933 : TTATG-TCTAGTCTTGCTGACTATATCAAAGAAAATAACAGTGCTATTATTACAAACTGGTCAATTAATTATATTATATTTGGAAAC-AAAGA-G-TTT--GACCAAGTGTTGAATAAATTATTATTGATA--ACAAACAA---AATC-A-TCTT--CA---ACCAT-CAA-TTA-----AA-----TATAA-A--A------GA-ACTC-TGTTA---AACAA-A----CTTTAAACATTAT-ATCCAAAATTT----T-TATAATA--CAGAAAGATATAAAGCAAAAGTAAACTTT-AA----------TTTGGTA-GGA--TT-TGATGCTCTT---TGGGA-GG-TCTATAAA--CC-------TCATG----TAA-TCT--A---CGATAT--AT-TTAC-TGATTCCCTTCCGGA-TTT--TGTGGTTAAATTGCTTTAAATATT-T---ATACA---ATCA-----AG-TACAGTAGAC-TTT-GTTCTT-CCAATCT-GT-TTTTCATACAATTATTATTATTAT
gi|20932 : TTATG-TCTAGTCTTGTTGACTATATCAAAGAAAAGAACAGTGCTATTATTACAAACTGGTCAGTTACTGATATTCTATTTGGAAAC-AAAGA-G-TTT--GACCCAGTGTTGAATAAATTATTATTGATA--ACAAAAAA---A--TAA-TTTT--CA---ACCGT-AAA-TTC-----AA-----TAAAA-A--A------GA-ACTC-TGTTT---AACAA-A----CTTTAAACATTAT-ATTCGAAATCT----T-TATAATA--CAGA----TATATAGCAAAAGTAAACTGT-AA----------TTTGGTA-GGA--TT-TGATGCTCTT---TGGGA-GG-TCTATAAA--CC-------TCTTG----TAA-TCC--A---AGATAC--AT-GTAT-TGATTCCCCTCCGGGTTTT--TGTGGTCAAATTGCTTTAATTATT-T---ATAC--------------G-TACAGTAGAC-TCT-GTTCTT-CCAATCT-TG-TTTTCATACAATTATTATTATTAT
gi|20934 : TTATA-TCTAGTCTTGTTGACTATATCAAAGAAAACAACAGTGCTATTATTACAAACTGGTCAATTACTGATATTTTATTAAGAAACGAA-GA-G-TTT--GACTCAGTGTTGAATAAA----------------AAAA--------TCA-TCTT--CA---ACCAT-AAA-TTA-----AA-----T-GAA-A--A---A--GA-ACTC-TGTTT---AACAA-A----CTTTATACATTATGATT
gi|20935 : TCTGGTCTTGTCGACTATATCAAAAAAAATAAGAATGCTGTTGTGACAGCCTGATCAACTACTGGTCGTATGTTTTGAAACAAA-AA-G-TTT--GACCCAGTCTTGAATGACGTATTATTGATA--ATAAAAAA---AGTCC--TCTT--CA---ACAAT-AAT-TTA-----AA-----T-TAA-A--A---G--GA-TCTC-TATTT---A
gi|20939 : ttgtaATTATCTGAATGAAAAGTGCAATACAGTAAATACAGACTGGTCATCTTCAGACATAATCTTTGGCAGT-AT-GA-AATTC--GAAACTGTTTTGAATAGGCTGCTAT--ATACTGCTAAA---------CA--CTT--CATATACTGTCAAA---A-----AA-----TGAAA-A--A---C--AATATTCCTATTTTTGAAC--------CTTCAAACACTAT-ATT-AAAATGT----TGTATGAAA--CAGAACGATGTATTGCCAAAAATAACATT-GA----------GGTGGAA-AAA--TT-TGAT-TTGTTA--TGGAA----CCTATACATTCC-------CCTTA----T-A-TCTTAA---AAATAA--AGACTAT-TAATTtaatacagaaagatgcaaatgtaaacttaaacgggtaggcttcgacacactaacctcttgtaatcttattaatttgttgattccccaccaggttgtgtaggtaaattgtttttaatattgtatacaatcacgcgcagtaaacttacttcttacaaactatgtttccgtacaattattgttgttat
gi|20940 : AAAAAATGTATAG-GC-ATTAATTTGAATTGGACAAATACAGACATTATGTTCGTAAAT-AA--A-T-TTTTTGACAAAATTTTGAATAAAATAATATTAATT--GC-AAAGA---AATTTA-TTTA--CA---CCCAG-AAA-CT-------------TAAAA-C--A---GTTAA-ACTTACACTT---GAC-A-A----CTTTAAAAAACAT-ATTTT-AATCT----G-TATAACA--CAGAACGGTATCTTGCAACAATAAAATGT-AAAATACACACTTTTGATA-TTA--TT-TGAttacatttttcagatttatgtattataaagttgc
gi|20938 : TGC-ATTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-AA-T-TTTT-GACAAAGTTTTGAATAAAATAATATTAATT--GCAAAGAA---A---TG-TATTGACA---CTCAG-AAA-CT-------------TAAAA-C--AGTTA--AA-CCTA-CACTT---GACAA------TTTTAAAAAC-AT-ATTATAAATCT----G-TATAATA--CAGAACGGTATCTTGCAACAATAAATTGT-AA----------aatgattataagccactattatcttgatacaaatttgaaacattttacatgttactctttcagttttaatttagacacatttgtttgattaccaataatatttata
gi|20937 : tcgtgtttgaaccatattcgcgaaaaatgtataATTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-AA-T-TTTT-GACAAAGTTTTAAATAAAATAATATTAATT--GCATAGAA---A-TTTA-TTTA--CA---CCCAG-AAA-CT-------------TAAAA-C--AGTTA--AA-CCTA-CACTT---GACAA------CTTTAAAAAACAT-ATTATAAATCT----G-TATAATA--CAGAACGGTATCTTGCAACAATAAATTGTAAA----------ATTCACA-CT---TT-TGATATTATT---TGAAA-TG-ACTATAAG--CCACTAATATCTTGATACTAA-TTT--G---AAACAT--TT-TTCA-TGTTTCTCTTTCAGT-TTT--
gi|20942 : ttatctcctgtttgatgaaccatattcgcgaaaatgtataggcATTAATTTAGATTGGACAAATACAGAGATTATGCTCGGAAAT-AA-AAAG-TTT--GACAAAGTCTTAAATAAAATAATATCAATT--GCATAGAA---A-TTTA-TTTA--CA---CTCAA-AAACTTA------------TAACA-GTTA---A---A-CCTA-CACTT---GACAA------CTTTAAAAAACAT-ATTATAAATCT----G-CGTAACA--CAGAACGGTATCTTGCAACAACAAATTGT-AA----------AAT-ACA-GAA--TT-T--TGCTATTATCTGGAATGA-TT-ATAAG--CCACTAATATCTTGATA-TAACTTT--G---AAACAT---T-TTACATGTTACTCTTTCAGT-TTTAATTTAGTCACATTAGTTTG---ATT-TCAAATACATGTATTA-----TT-T---GTAGACATTTAATTTTA-TCAAT
gi|20941 : ATTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-AAAG-TTT--GACAAAGTCTTGAATAAAATAATATTAATT--G-AAAAGA---AATGAA-TTTA--CA---CTAAG-AAACTTA-----AAACAGTTAAAC-A--T---A---C-ACGC---------AAC-A-A----CTTTGAAAACCAT-ATCATAATTCT----G-TATAAGATTCTGTAAAATATAT-GCAAAAATAAATTGT-AA----------AAT-ACA-CAA--CTGTGATATTATT---TGGAATGA-TT-ATAAG--CC-------ACTTA----T-A-TCT------TGATAT--Ac
gi|20936 : AAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-AA-T-TTTT-GACAAAGTTTTGAATAAAATAATATTAATT--GCAAAGAA---A-TTTA-TTTA--CA---CCCAG-AAA-CT-------------TAAAA-C--AGTTA--AA-CCTA-CACTT---GACAA------CTTTAAAAAACAT-ATTATAAATCT----G-TATAATA--CAGAACGGTATCTTGCAACAATAAATTGT-AA-------------AATACACACTTT-TGATATTATT---TGGAA-TG-ACTATAAG--CC-------ACTTA----T-A-TCT--
gi|20943 : ttatctcctgtttgatgaaccatattcgtgaaaaatgtataggcactaatttCCAAGTGTTGAATAAATTATTATTGATA--ACAAAAAA---A--TCA-TCTT--CA---ACCAT-AAA-TTA-----AA-----TAAAATA--A---A-------TC-TGTTT---AACAA-A----CTTTAAACATAAT-ATTTGAAATAT----T-T----------------------------GTAAACTTT-AA----------TTTTATA-GGA--CT-TAATGCTCTT---TGGGA-GGGTCTATTTA--TC-------TCTTG----TAA-TCT--ATATATATAT--AT-TTAT-TGATTCCCCTCCGGG-TTTG-TGTGGTTAAATTGCTTTAAATATT-T---ATACA---ATCA-----CG-TACAGTAGGC-TTT--TTCTT-TCAATCT-TT-TTTTCATACAATTATTATTATAAT
gi|20935 : TTGA-A--ACAAAAAGTTTGACCCAGTCTT--GA---ATGAC-GTA-TTATTGATAA-----TAAAA-A--A---A--GT-CCTC-T--TC---AACAATA----ATTTAAA--TTAA-A---AGGATCTCTATT-TATAATA--CAGAAAGAT-----GCAAATGTAAACTTA-AA----------CG-GGTA-GGC--TT-CGACACACT-------------------AA--CC-------TCTTG----TAA-TCT---------TATTAAT-TTGT-TGATTCCCCACCAGG-TTG--TGTAGGTAAATTGTTTTTAATATTGT---ATACA---ATCA-----CG-CGCAGTAAAC-TTA-CTTCTTACAAACTA-TG-TTTCCGTACAATTATTGTTGTTAT
gi|20944 : ttgtatctggtcttgtcgactatatcaaaaaaaataagaatgctgttgtgacagcctgatcaactactggtcgtatgtt-AAA-TTA-----AA------AAAA-A--A---A--GA-A------------AAAAA-AAAGACTTTATACATTAT-ATTCGAAATCT----T-TATAATA--CAGAAAGATATATAACAATAGTAAACTTT-AA----------TTTGGTA-GGA--TT-TGATGCTCTT---TGGGA-GG-CCTATAAA--CC-------TCTTG----TAA-TCT--A---ACATAT--AT-TTAT-TGATTCCCCTACGGG-TTTG-TGTGGTTAAATTGCTTTAAATATT-T---ATACA---ATCA-----AG-TACAGCAGAC-ATT-GTTCTT-CCAATCT-TT-TTTTCATACAATTATTATTATTAT
gi|20945 : -TTT--TGTAGTTAAACTGTCCTAAATATT-T---ATGCA---ATCA-----CA-TACAGTAGAC-TTT-ATTCTT-TCAATCTATTATTTTAATATAATTATTATTATTAT
gi|20946 : -TTT--TGTAGTTAAACTGTCCTAAATATT-T---ATACA---ATCA-----CA-TACAGTAGAC-TTT-ATTCTT-TCAGTCTGTTATTTTCATAAACTTATTATTATTAT
gi|20947 : -TTT--TGTAGTTAAATTGTTCTAAATATC-C---ACACA---ATCA-----CG-TACAGCAGAC-TTT-ATTCTT-TCAGTCTATT-TTTCCATAC-ATTAGTATTATGAT
gi|20948 : -TTT--TGTAGTTAAAGTGTTCTAAATATT-T---ACACA---GTCACATACAG-T-CAGTAGAC-TTT-ATTCTT-TCAATCTATT-TTTCCGTACAATGATTATT
Alignments
lowQualScore : 11 1 11 11 2222 111 33333333333333333333333 11111 1111 3333333 1111 111111 1
lowQualScore : 55 1 66 8 0 33 2 4 1 1 1 1 1 3 6 00 888 33 2 33 1 1 2 0 2 1 3333 1 0 3 2 2 33 666 33333333333333333333333 444 44444 5 11 2 44 2 1 77777 6 1 666 2 2 2 2 2 0000 6 88 3 1 888 5 88 44 0000000 5555 7777 3 333333 1 77777 7 5 99 1 77777 555 77777 3 555 555 3 7777 3 55 0 8 7
lowQualScore : .. . .. . . .. . . . . . . . . . .. ... .. . .. . . . . . . .... . . . . . .. ... ....................... ... ..... . .. . .. . . ..... . . ... . . . . . .... . .. . . ... . .. .. ....... .... .... . ...... . ..... . . .. . ..... ... ..... . ... ... . .... . .. . . .
lowQualScore : 22 1 11 0 1 66 8 4 2 0 0 0 0 0 2 55 222 55 0 99 0 1 0 4 0 6 3333 9 4 9 4 0 55 666 33333333333333333333333 777 66666 0 88 7 88 9 0 11111 1 1 555 9 0 9 5 9 6666 2 55 1 5 555 4 22 22 0000000 0000 7777 1 000000 6 22222 3 7 66 2 77777 444 77777 1 444 888 3 1111 3 44 1 2 3
consensus : TTATG-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--GNACAGTGCTATTANTNCAAACTGGNCAANTACNGACATTATGTTCGGAAAC-AA-GA-G-TTT--GACNAA--GTNTTGAATAAAATANTATTGATNGCAAAAAAA---ATTCATCTNCANCCANAAA-TTAAATAAAA-A--A---A--GA-AC-TC-C-GCTT---AACAAA----CTTTAAACANCAT-ATTNNAAAT-CTNTATAA-----TACAGAACGGTATATTG-CAANAGTAA-ACTGT-AANTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGG-NCTATAAA--CC-------TCTTG----T---AA-TCT--A---AGATAT--AT-TTAT-TGATTCCCCTCCGGG-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCACG-TA----CAGTAGAC-TTT-ATTCTTCCAATCTATT-TTTTCATACAATTATTATTATTAT
Reference ( family-814 ) : TTATG-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--GAACAGTGCTATTANTNCAAACTGGNCAANTACAGACATTATGTTCGGAAAT-AA-GA-G-TTT--GACNAA--GTNTTGAATAAAATANTATTGATNGCAAAAAAA---ATTCATCTTCAACCANAAA-TTAAATAAAA-A--A---A--GA-AC-TC-C-GTTT---AACAAA----CTTTAAACANCAT-ATTNNAAAT-CTNTATAA-----TACAGAACGGTATATTG-CAANAGTAA-ACTGT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGG-TCTATAAA--CC-------TCTTG----T---AA-TCT--A---AGATAT--AT-TTAT-TGATTCCCCTCCGGG-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCACG-TA----CAGTAGAC-TTT-ATTCTTCCAATCT-TT-TTTTCATACAATTATTATTATTAT
gi|20930 : TTATGCTCTAGTCTTGTT--GA-TTATATCAAAGAAAG--GAACAGTGCTATTATTACAAACTGGTCAATTACTGATATTCTATTTGGAAAC-AA-GA-G-TTT--GACCCA--GTGTTGAATAAACTATTATTGATAACAAAAAAA---ACCCATCTTCAACCATAAA-TTAAATAAAA-A--A---A--GA-AC-TC-T-GTTT---AACAAA----CTTTAAACATTAT-ATTCGAAAT-CTTTATAA-----TACAGAAAGGTATATAG-CAAAAGCAA-ACTTT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGG-TCAATAAA--CC-------TCTTG----T---AA-TCT--A---AGATAT--AT-TTAT-TGATTCCCCTCCGGG-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCAAG-TA----CAGTAGAC-TTT-GTTTTTCCAATTT-TT-TTTTCATACAATTATCATTATTAT
gi|20931 : TTATG-TCTAATCTTGTT--GA-CTATATCAAAGAAAA--GAACAGTGCTATTATTACAAACTGGTCAATTACTGATATTCTATTTGGAAAC-AAAGA-G-TTT--GACCCA--G-GTTGAATAAAATATTATTGATAACAAAAAAA---AT-CATCTTCAACCATAAA-TTAAATAAAA----A---A--GA-AC-TC-T-GTTT---AACAAA----CTTTAAACATTAT-ATTCGAAAT-CTTTATAA-----CACAGAAAGATATATAG-CAAAAGTAA-ACTTT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGG-TCTATAAA--CC-------TCTTC----T---AA-TCT--A---AGATAC--A--TTAA-TGATTTCCCTCCGGGTTTT--TGTGGTTAAA-----TTGCT---TCA-----AATA-T-T---ATACA---ATCAAGTTA----CAGTAGAC-TTG-ATCCTTCCAATCT-TT-TTTTCATACAATTATTATTATTAT
gi|20932 : TTATG-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--GAACAGTGCTATTATTACAAACTGGTCAGTTACTGATATTCTATTTGGAAAC-AAAGA-G-TTT--GACCCA--GTGTTGAATAAATTATTATTGATAACAAAAAAA-----TAATTTTCAACCGTAAA-TTCAATAAAA-A--A------GA-AC-TC-T-GTTT---AACAAA----CTTTAAACATTAT-ATTCGAAAT-CTTTATAA-----TACAGA----TATATAG-CAAAAGTAA-ACTGT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGG-TCTATAAA--CC-------TCTTG----T---AA-TCC--A---AGATAC--AT-GTAT-TGATTCCCCTCCGGGTTTT--TGTGGTCAAA-----TTGCT---TTA-----ATTATT-T---AT---------ACG-TA----CAGTAGAC-TCT-GTTCTTCCAATCT-TG-TTTTCATACAATTATTATTATTAT
gi|20933 : TTATG-TCTAGTCTTGCT--GA-CTATATCAAAGAAAA--TAACAGTGCTATTATTACAAACTGGTCAATTAATTATATTATATTTGGAAAC-AAAGA-G-TTT--GACCAA--GTGTTGAATAAATTATTATTGATAACAAACAAA---AT-CATCTTCAACCATCAA-TTAAATATAA-A--A------GA-AC-TC-T-GTTA---AACAAA----CTTTAAACATTAT-ATCCAAAAT-TTTTATAA-----TACAGAAAGATATAAAG-CAAAAGTAA-ACTTT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGG-TCTATAAA--CC-------TCATG----T---AA-TCT--A---CGATAT--AT-TTAC-TGATTCCCTTCCGGA-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCAAG-TA----CAGTAGAC-TTT-GTTCTTCCAATCT-GT-TTTTCATACAATTATTATTATTAT
gi|20934 : TTATA-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--CAACAGTGCTATTATTACAAACTGGTCAATTACTGATATTTTATTAAGAAACGAA-GA-G-TTT--GACTCA--GTGTTGAATAAAA-------------AAA---------TCATCTTCAACCATAAA-TTAAAT-GAA-A--A---A--GA-AC-TC-T-GTTT---AACAAA----CTTTATACATTATGATT
gi|20935 : TTGTA-TCTGGTCTTGTC--GA-CTATATCAAAAAAAA--TAAGAATGCTGTTGTGACAGCCTGATCAACTACTGGTCGTATGTTTTGAAAC-AA-AAAG-TTT--GACCCA--GTCTTGAATGACGTATTATTGATAATAAAAAAA---GTCC-TCTTCAAC----------AATAA-------------------------TTT---AA---A------TTAAA-AGGAT--CTCTA-----TTTATAA-----TACAGAAAGAT-----G-CAAATGTAA-ACT-T-AAACGGGTA-GGC--TT-CGACACACT------------------AA--CC-------TCTTG----T---AA-TCT---------TATTAAT-TTGT-TGATTCCCCACCAGG-TTG--TGTAGGTAAA-----TTGTT---TTT-----AATATTGT---ATACA---ATCACG-CG----CAGTAAAC-TTA-CTTCTTACAAACTATG-TTTCCGTACAATTATTGTTGTTAT
gi|20936 : TTATC-TCCTGT-TTGAT--GAACCATATTCGTGAAAAATGTATAG-GC-ACTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-AA-T-TTTT-GACAAA--GTTTTGAATAAAATAATATTAATTGCAAAGAAA----TTTATTTACACCCAGAAA-CT---TAAAA-C--AGTTA--AA-CC-TA-C-ACTT---GACAA-----CTTTAAAAAACAT-ATTATAAAT-CTGTATAA-----TACAGAACGGTATCTTG-CAACAATAA-ATTGT-AA---AATACACACTTT-TGATATTATT---TGGAATG-ACTATAAG--CC-------ACTTA----T----A-TCT--
gi|20937 : TTATC-TCCTGT-TTGAT--GAACCATATTCGCGAAAAT-GTATAG-GC-ATTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-AA-T-TTTT-GACAAA--GTTTTAAATAAAATAATATTAATTGCATAGAAA----TTTATTTACACCCAGAAA-CT---TAAAA-C--AGTTA--AA-CC-TA-C-ACTT---GACAA-----CTTTAAAAAACAT-ATTATAAAT-CTGTATAA-----TACAGAACGGTATCTTG-CAACAATAA-ATTGTAAAATTCACA-CT---TT-TGATATTATT---TGAAATG-ACTATAAG--CCACTAATATCTTGATACT---AA-TTT--G---AAACAT--TT-TTCA-TGTTTCTCTTTCAGT-TTT--
gi|20938 : TCGTGTTTGAA-CCATATTCGCGAAAAATGTATA-TGC-ATTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-AA-T-TTTT-GACAAA--GTTTTGAATAAAATAATATTAATTGCAAAGAAATGTATTGA----CACTCAGAAA-CT---TAAAA-C--AGTTA--AA-CC-TA-C-ACTT---GACAA-----TTTTAAA-AACAT-ATTATAAAT-CTGTATAA-----TACAGAACGGTATCTTG-CAACAATAA-ATTGT-AA
gi|20939 : A-TTATCTGAATGAAAA--GTGCAATACAGTAAATACAGACTGGTCATCTTCAGACATAATCTTTGGCAGT-AT-GA-AATTC--GA--AACTGTTTTGAATAGGCTGCTATATACTGCTAAACAC----TTCATATACTGTCAAAAA-----ATGAAA-A--A---C--AATAT-TC-CTATTTTTGAAC-------CTTCAAACACTAT-ATTA-AAATGTTGTATGA-----AACAGAACGATGTATTGCCAAAAATAACATTG---AGGTGGAA-AAA--TT-TGAT-TTGTTA--TGGAA---CCTATACATTCC-------CCTTA----T----A-TCTTAA---AAATAA--AGACTAT-TAATT
gi|20940 : AAAAAAT--GTATAG-GC-ATTAATTTGAATTGGACAAATACAGACATTATGTTCGTAAAT-AA--A-T-TTTTTGACAAA--ATTTTGAATAAAATAATATTAATTGCAAAGAAA----TTTATTTACACCCAGAAA-CT---TAAAA-C--A---GTTAA-AC-TTAC-ACTT---GACAA-----CTTTAAAAAACAT-ATTTTAA-T-CTGTATAA-----CACAGAACGGTATCTTG-CAACAATAA-AATGT-AA---AATACACACTTT-TGATATTATT---TGAAATG-ATTATAAG--CCACTATTATCTTGA---TACAAA-TTT--G---AAACAT---T-TTACATGTTACTCTTTCAGT-TTT--AAT--TTAGACACATTTGTTTGATTACCAATAATATT-T---ATAttacatttttcagatttatgtattataaagttgc
gi|20941 : ATTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAATAAA-AA-G-TTT--GACAAA--GTCTTGAATAAAATAATATTAATTG-AAAAGAA---ATGAATTTACACTAAGAAA-CT---TAAAA-C--A---GTTAA-ACATA-C-ACGC---AAC-AA----CTTTGAAAACCAT-ATCATAATT-CTGTATAAGATTCTGTAAAA---TATA-TG-CAAAAATAA-ATTGT-AAAAT-ACA-CAA--CTGTGATATTATT---TGGAATG-ATTATAAG--CC-------ACTTA----T----A-TCT------TGATAT--A
gi|20942 : ATTAATTTAGATTGGACAAATACAGAGATTATGCTCGGAAAT-AA-AAAG-TTT--GACAAA--GTCTTAAATAAAATAATATCAATTGCATAGAAA----TTTATTTACACTCAAAAACTTA--TAACA-GTTA---A---A-CC-TA-C-ACTT---GACAA-----CTTTAAAAAACAT-ATTATAAAT-CTGCGTAA-----CACAGAACGGTATCTTG-CAACAACAA-ATTGT-AAAAT-ACA-GAA--TT-T--TGCTATTATCTGGAATG-ATTATAAG--CCACTAATATCTTGATA-T---AACTTT--G---AAACAT---T-TTACATGTTACTCTTTCAGT-TTTAATTTAGTCACA-----TTAGT---TTG--------ATT-TCAAATACATGTATTATT-T-------GTAGACATTTAATTTTATCAATC
gi|20943 : CCAA--GTGTTGAATAAATTATTATTGATAACAAAAAAA-----TCATCTTCAACCATAAA-TTAAATAAAATA--A---A--------TC-T-GTTT---AACAAA----CTTTAAACATAAT-ATTTGAAAT-ATTT--------------------------------GTAA-ACTTT-AATTTTATA-GGA--CT-TAATGCTCTT---TGGGAGGGTCTATTTA--TC-------TCTTG----T---AA-TCT--ATATATATAT--AT-TTAT-TGATTCCCCTCCGGG-TTTG-TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCACG-TA----CAGTAGGC-TTT--TTCTTTCAATCT-TT-TTTTCATACAATTATTATTATAAT
gi|20944 : AAA-TTAAA-AAAA-A--A---A--GA-A--------------AAAAAAAAGACTTTATACATTAT-ATTCGAAAT-CTTTATAA-----TACAGAAAGATATATAA-CAATAGTAA-ACTTT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGG-CCTATAAA--CC-------TCTTG----T---AA-TCT--A---ACATAT--AT-TTAT-TGATTCCCCTACGGG-TTTG-TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCAAG-TA----CAGCAGAC-ATT-GTTCTTCCAATCT-TT-TTTTCATACAATTATTATTATTAT
gi|20945 : -TTT--TGTAGTTAAA-----CTGTC---CTA-----AATATT-T---ATGCA---ATCACA-TA----CAGTAGAC-TTT-ATTCTTTCAATCTATTATTTTAATATAATTATTATTATTAT
gi|20946 : -TTT--TGTAGTTAAA-----CTGTC---CTA-----AATATT-T---ATACA---ATCACA-TA----CAGTAGAC-TTT-ATTCTTTCAGTCTGTTATTTTCATAAACTTATTATTATTAT
gi|20947 : -TTT--TGTAGTTAAA-----TTGTT---CTA-----AATATC-C---ACACA---ATCACG-TA----CAGCAGAC-TTT-ATTCTTTCAGTCTATT-TTTCCATAC-ATTAGTATTATGAT
gi|20948 : -TTT--TGTAGTTAAA-----GTGTT---CTA-----AATATT-T---ACACA---GTCACA-TACAGTCAGTAGAC-TTT-ATTCTTTCAATCTATT-TTTCCGTACAATGATTATT
Alignments
lowQualScore : 11 1 111 11 222 11 2222222 111111 3333333 1111 111111 1
lowQualScore : 55 1 66 8 0 33 1 4 1 1 1 1 1 1 6 333 6 33 2 33 1 1 2 0 2 000 1 1 1 2 00 8888 3333333 44 2 33333 7777 777777 5 22 2 44 33 2 1 6666 77777 6 1 666 2 2 2 2 2 8888 6 88 3 1 888 5 55 44 0000000 5555 7777 3 333333 1 77777 7 5 99 1 77777 555 77777 3 555 555 3 7777 3 55 0 6 7
lowQualScore : .. . .. . . .. . . . . . . . . . ... . .. . .. . . . . . ... . . . . .. .... ....... .. . ..... .... ...... . .. . .. .. . . .... ..... . . ... . . . . . .... . .. . . ... . .. .. ....... .... .... . ...... . ..... . . .. . ..... ... ..... . ... ... . .... . .. . . .
lowQualScore : 22 1 11 0 1 66 0 4 2 0 0 0 0 0 2 555 2 55 0 99 0 1 0 4 0 999 0 0 0 7 55 4444 7777777 11 5 22222 8888 333333 0 77 7 88 99 9 0 1111 11111 1 1 555 9 0 9 5 9 5555 2 55 1 5 555 4 22 22 0000000 0000 7777 1 000000 6 22222 3 7 66 2 77777 444 77777 1 444 888 3 1111 3 44 1 0 3
consensus : TTATG-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--GNACAGTGCTATTANTNCAAACTGGNCAANTACNGACATTATGTTCGGAAAC-AA-G-A-GTTT--GACNAA--GTNTTGAATAAAATANTATTGATNGCAAAAAAAATTCATCTNCANCCANAAA-TTAAATAAAA-A--A---A--GA-AC-TC-CGCTT----AACAA-A----CTTTAAACANCAT-ATTNNAA--AT-CTNTAT----AA-----TACAGAACGGTATATTG-CAANAGTAA-ACTGT-AANTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGN-CTATAAA--CC-------TCTTG----T---AA-TCT--A---AGATAT--AT-TTAT-TGATTCCCCTCCGGG-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCACG-TACAGT----AGAC-TTT-ATTCTTCCAATCTATT-TTTTCATACAATTATTATTATTAT
Reference ( family-814 ) : TTATG-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--GNACAGTGCTATTANTNCAAACTGGNCAANTACNGACATTATGTTCGGAAAC-AA-G-A-GTTT--GACNAA--GTNTTGAATAAAATANTATTGATNGCAAAAAAAATTCATCTNCANCCANAAA-TTAAATAAAA-A--A---A--GA-AC-TC-CGCTT----AACAA-A----CTTTAAACANCAT-ATTNNAA--AT-CTNTAT----AA-----TACAGAACGGTATATTG-CAANAGTAA-ACTGT-AANTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGN-CTATAAA--CC-------TCTTG----T---AA-TCT--A---AGATAT--AT-TTAT-TGATTCCCCTCCGGG-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCACG-TACAGT----AGAC-TTT-ATTCTTCCAATCTATT-TTTTCATACAATTATTATTATTAT
gi|20930 : TTATGCTCTAGTCTTGTT--GA-TTATATCAAAGAAAG--GAACAGTGCTATTATTACAAACTGGTCAATTACTGATATTCTATTTGGAAAC-AA-G-A-GTTT--GACCCA--GTGTTGAATAAACTATTATTGATAACAAAAAAAACCCATCTTCAACCATAAA-TTAAATAAAA-A--A---A--GA-AC-TC-TGTTT----AACAA-A----CTTTAAACATTAT-ATTCGAA--AT-CTTTAT----AA-----TACAGAAAGGTATATAG-CAAAAGCAA-ACTTT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGT-CAATAAA--CC-------TCTTG----T---AA-TCT--A---AGATAT--AT-TTAT-TGATTCCCCTCCGGG-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCAAG-TACAGT----AGAC-TTT-GTTTTTCCAATTT-TT-TTTTCATACAATTATCATTATTAT
gi|20931 : TTATG-TCTAATCTTGTT--GA-CTATATCAAAGAAAA--GAACAGTGCTATTATTACAAACTGGTCAATTACTGATATTCTATTTGGAAAC-AAAG-A-GTTT--GACCCA--G-GTTGAATAAAATATTATTGATAACAAAAAAAAT-CATCTTCAACCATAAA-TTAAATAAAA----A---A--GA-AC-TC-TGTTT----AACAA-A----CTTTAAACATTAT-ATTCGAA--AT-CTTTAT----AA-----CACAGAAAGATATATAG-CAAAAGTAA-ACTTT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGT-CTATAAA--CC-------TCTTC----T---AA-TCT--A---AGATAC--A--TTAA-TGATTTCCCTCCGGGTTTT--TGTGGTTAAA-----TTGCT---TCA-----AATA-T-T---ATACA---ATCAAGTTACAGT----AGAC-TTG-ATCCTTCCAATCT-TT-TTTTCATACAATTATTATTATTAT
gi|20932 : TTATG-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--GAACAGTGCTATTATTACAAACTGGTCAGTTACTGATATTCTATTTGGAAAC-AAAG-A-GTTT--GACCCA--GTGTTGAATAAATTATTATTGATAACAAAAAAA--TAATTTTCAACCGTAAA-TTCAATAAAA-A--A------GA-AC-TC-TGTTT----AACAA-A----CTTTAAACATTAT-ATTCGAA--AT-CTTTAT----AA-----TACAGA----TATATAG-CAAAAGTAA-ACTGT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGT-CTATAAA--CC-------TCTTG----T---AA-TCC--A---AGATAC--AT-GTAT-TGATTCCCCTCCGGGTTTT--TGTGGTCAAA-----TTGCT---TTA-----ATTATT-T---AT---------ACG-TACAGT----AGAC-TCT-GTTCTTCCAATCT-TG-TTTTCATACAATTATTATTATTAT
gi|20933 : TTATG-TCTAGTCTTGCT--GA-CTATATCAAAGAAAA--TAACAGTGCTATTATTACAAACTGGTCAATTAATTATATTATATTTGGAAAC-AAAG-A-GTTT--GACCAA--GTGTTGAATAAATTATTATTGATAACAAACAAAAT-CATCTTCAACCATCAA-TTAAATATAA-A--A------GA-AC-TC-TGTTA----AACAA-A----CTTTAAACATTAT-ATCCAAA--AT-TTTTAT----AA-----TACAGAAAGATATAAAG-CAAAAGTAA-ACTTT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGT-CTATAAA--CC-------TCATG----T---AA-TCT--A---CGATAT--AT-TTAC-TGATTCCCTTCCGGA-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCAAG-TACAGT----AGAC-TTT-GTTCTTCCAATCTG-T-TTTTCATACAATTATTATTATTAT
gi|20934 : TTATA-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--CAACAGTGCTATTATTACAAACTGGTCAATTACTGATATTTTATTAAGAAACGAA-G-A-GTTT--GACTCA--GTGTTGAATAAAA------------------AAAT-CATCTTCAACCATAAA-TTAAAT-GAA-A--A---A--GA-AC-TC-TGTTT----AACAA-A----CTTTATACATTATGATT
gi|20935 : TTGTA-TCTGGTCTTGTC--GA-CTATATCAAAAAAAA--TAAGAATGCTGTTGTGACAGCCTGATCAACTACTGGTCGTATGTTTTGAAACAAA-A-A-GTTT--GACCCA--GTCTTGAATGACGTATTATTGATAATAAAAAAAGTCC-TCTTCAACAATAAT-TTAAAT-TAA-A--A---G--GA-TC-TC-TATTT----A
gi|20935 : AATAAAA-A--A---A--G-----TC-CTCTTC---AACAATA----ATTTAAA--------TTAAAAGGAT-CTCTATTTATAA-----TACAGAAAGAT-----G-CAAATGTAA-ACT-T-AAACGGGTA-GGC--TT-CGACACACT------------------AA--CC-------TCTTG----T---AA-TCT---------TATTAAT-TTGT-TGATTCCCCACCAGG-TTG--TGTAGGTAAA-----TTGTT---TTT-----AATATTGT---ATACA---ATCACG-CGCAGT----AAAC-TTA-CTTCTTACAAACTATG-TTTCCGTACAATTATTGTTGTTATtaatacagaaagatgcaaatgtaaacttaaacgggtaggcttcgacacactaacctcttgtaatcttattaatttgttgattccccaccaggttgtgtaggtaaattgtttttaatattgtatacaatcacgcgcagtaaacttacttcttacaaactatgtttccgtacaattattgttgttat
gi|20936 : ttgtatctggtcttgtcgactatatcaaaaaaaataagaatgctgttgtgacagcctgatcaactactggtcgtatgttttgaaacaaaaagtttgacccagtcttgaatgacgtattattgatTTATC-TCCTGT-TTGAT--GAACCATATTCGTGAAAAATGTATAG-GC-ACTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-A-A-TTTTT-GACAAA--GTTTTGAATAAAATAATATTAATTGCAAAGAAA-TTTATTTACACCCAGAAA-CT---TAAAA-C--AGTTA--AA-CC-TA-CACTT----GACAA------CTTTAAAAAACAT-ATTATAA--AT-CTGTAT----AA-----TACAGAACGGTATCTTG-CAACAATAA-ATTGT-AAA---ATACACACTTT-TGATATTATT---TGGAATGA-CTATAAG--CC-------ACTTA----T----A-TCT--
gi|20937 : TTATC-TCCTGT-TTGAT--GAACCATATTCGCGAAAAT-GTATAG-GC-ATTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-A-A-TTTTT-GACAAA--GTTTTAAATAAAATAATATTAATTGCATAGAAA-TTTATTTACACCCAGAAA-CT---TAAAA-C--AGTTA--AA-CC-TA-CACTT----GACAA------CTTTAAAAAACAT-ATTATAA--AT-CTGTAT----AA-----TACAGAACGGTATCTTG-CAACAATAA-ATTGTAAAATTCACA-CT---TT-TGATATTATT---TGAAATGA-CTATAAG--CCACTAATATCTTGATACT---AA-TTT--G---AAACAT--TT-TTCA-TGTTTCTCTTTCAGT-TTT--
gi|20938 : TCGTGTTTGAA-CCATATTCGCGAAAAATGTATA-TGC-ATTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-A-A-TTTTT-GACAAA--GTTTTGAATAAAATAATATTAATTGCAAAGAAA-TGTATTGACACTCAGAAA-CT---TAAAA-C--AGTTA--AA-CC-TA-CACTT----GACAA------TTTTAAA-AACAT-ATTATAA--AT-CTGTAT----AA-----TACAGAACGGTATCTTG-CAACAATAA-ATTGT-AA
gi|20939 : A-TTATCTGAATGAAAA--GTGCAATACAGTAAATACAGACTGGTCATCTTCAGACATAATCTTTGGCAGT-AT-GAA-ATTC--GA--AACTGTTTTGAATAGGCTGCTATATACTGC-TAAACACTTCATATACTGTCAAA-----AAATGAAA-A--A---C--AATAT-TC-CTATTTTTGAAC--------CTTCAAACACTAT-ATT-AAA--ATGTTGTAT----GA-----AACAGAACGATGTATTGCCAAAAATAACATTG---AGGTGGAA-AAA--TT-TGAT-TTGTTA--TGGAA--C-CTATACATTCC-------CCTTA----T----A-TCTTAA---AAATAA--AGACTAT-TAATT
gi|20940 : AAAAAAT--GTATAG-GC-ATTAATTTGAATTGGACAAATACAGACATTATGTTCGTAAAT-AA---A-TTTTTTGACAAA--ATTTTGAATAAAATAATATTAATTGCAAAGAAA-TTTATTTACACCCAGAAA-CT---TAAAA-C--A---GTTAA-AC-TTACACTT----GACAA------CTTTAAAAAACAT-ATTTTAA---T-CTGTAT----AA-----CACAGAACGGTATCTTG-CAACAATAA-AATGT-AAA---ATACACACTTT-TGATATTATT---TGAAATGA-TTATAAG--CCACTATTATCTTGA---TACAAA-TTT--G---AAACAT---T-TTACATGTTACTCTTTCAGT-TTT--AAT--TTAGACACATTTGTTTGATTACCAATAATATT-T---ATAttacatttttcagatttatgtattataaagttgc
gi|20941 : ATTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-A-AAGTTT--GACAAA--GTCTTGAATAAAATAATATTAATTG-AAAAGAAATGAATTTACACTAAGAAA-CT---TAAAA-C--A---GTTAA-ACATA-CACGC----AAC-A-A----CTTTGAAAACCAT-ATCATAA--TT-CTGTAT----AAGATTCTGTAAAA---TATA-TG-CAAAAATAA-ATTGT-AAAAT-ACA-CAA--CTGTGATATTATT---TGGAATGA-TTATAAG--CC-------ACTTA----T----A-TCT------TGATAT--A
gi|20942 : ATTAATTTAGATTGGACAAATACAGAGATTATGCTCGGAAAT-AA-A-AAGTTT--GACAAA--GTCTTAAATAAAATAATATCAATTGCATAGAAA-TTTATTTACACTCAAAAACTTA--TAACA-GTTA---A---A-CC-TA-CACTT----GACAA------CTTTAAAAAACAT-ATTATAA--AT-CTGCGT----AA-----CACAGAACGGTATCTTG-CAACAACAA-ATTGT-AAAAT-ACA-GAA--TT-T--TGCTATTATCTGGAATGA-TTATAAG--CCACTAATATCTTGATA-T---AACTTT--G---AAACAT---T-TTACATGTTACTCTTTCAGT-TTTAATTTAGTCACA-----TTAGT---TTG--------ATT-TCAAATACATGTATTATT-T---GT----AGACATTTAATTTTATCAATC
gi|20943 : CCAA--GTGTTGAATAAATTATTATTGATAACAAAAAAA--TCATCTTCAACCATAAA-TTAAATAAAATA--A---A--------TC-TGTTT----AACAA-A----CTTTAAACATAAT-ATTTGAA--AT-ATTT------------------------------------GTAA-ACTTT-AATTTTATA-GGA--CT-TAATGCTCTT---TGGGAGGGTCTATTTA--TC-------TCTTG----T---AA-TCT--ATATATATAT--AT-TTAT-TGATTCCCCTCCGGG-TTTG-TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCACG-TACAGT----AGGC-TTT--TTCTTTCAATCT-TT-TTTTCATACAATTATTATTATAAT
gi|20944 : AAA-TTAAA-AAAA-A--A---A--GA-A--------------AAAAA-AAAGACTTTATACATTAT-ATTCGAA--AT-CTTTAT----AA-----TACAGAAAGATATATAA-CAATAGTAA-ACTTT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGC-CTATAAA--CC-------TCTTG----T---AA-TCT--A---ACATAT--AT-TTAT-TGATTCCCCTACGGG-TTTG-TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCAAG-TACAGC----AGAC-ATT-GTTCTTCCAATCT-TT-TTTTCATACAATTATTATTATTAT
gi|20945 : -TTT--TGTAGTTAAA-----CTGTC---CTA-----AATATT-T---ATGCA---ATCACA-TACAGT----AGAC-TTT-ATTCTTTCAATCTATTATTTTAATATAATTATTATTATTAT
gi|20946 : -TTT--TGTAGTTAAA-----CTGTC---CTA-----AATATT-T---ATACA---ATCACA-TACAGT----AGAC-TTT-ATTCTTTCAGTCTGTTATTTTCATAAACTTATTATTATTAT
gi|20947 : -TTT--TGTAGTTAAA-----TTGTT---CTA-----AATATC-C---ACACA---ATCACG-TACAGC----AGAC-TTT-ATTCTTTCAGTCTATT-TTTCCATAC-ATTAGTATTATGAT
gi|20948 : -TTT--TGTAGTTAAA-----GTGTT---CTA-----AATATT-T---ACACA---GTCACA-TACAGTCAGTAGAC-TTT-ATTCTTTCAATCTATT-TTTCCGTACAATGATTATT
Alignments
lowQualScore : 11 1 111 11 222 11 2222222 111111 3333333 1111 111111 1
lowQualScore : 55 1 66 8 0 33 1 4 1 1 1 1 1 1 6 333 6 33 2 33 1 1 2 0 2 000 1 1 1 2 00 8888 3333333 44 2 33333 7777 777777 5 22 2 44 33 2 1 6666 77777 6 1 666 2 2 2 2 2 8888 6 88 3 1 888 5 55 44 0000000 5555 7777 3 333333 1 77777 7 5 99 1 77777 555 77777 3 555 555 3 7777 3 55 0 6 7
lowQualScore : .. . .. . . .. . . . . . . . . . ... . .. . .. . . . . . ... . . . . .. .... ....... .. . ..... .... ...... . .. . .. .. . . .... ..... . . ... . . . . . .... . .. . . ... . .. .. ....... .... .... . ...... . ..... . . .. . ..... ... ..... . ... ... . .... . .. . . .
lowQualScore : 22 1 11 0 1 66 0 4 2 0 0 0 0 0 2 555 2 55 0 99 0 1 0 4 0 999 0 0 0 7 55 4444 7777777 11 5 22222 8888 333333 0 77 7 88 99 9 0 1111 11111 1 1 555 9 0 9 5 9 5555 2 55 1 5 555 4 22 22 0000000 0000 7777 1 000000 6 22222 3 7 66 2 77777 444 77777 1 444 888 3 1111 3 44 1 0 3
consensus : TTATG-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--GNACAGTGCTATTANTNCAAACTGGNCAANTACNGACATTATGTTCGGAAAC-AA-G-A-GTTT--GACNAA--GTNTTGAATAAAATANTATTGATNGCAAAAAAAATTCATCTNCANCCANAAA-TTAAATAAAA-A--A---A--GA-AC-TC-CGCTT----AACAA-A----CTTTAAACANCAT-ATTNNAA--AT-CTNTAT----AA-----TACAGAACGGTATATTG-CAANAGTAA-ACTGT-AANTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGN-CTATAAA--CC-------TCTTG----T---AA-TCT--A---AGATAT--AT-TTAT-TGATTCCCCTCCGGG-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCACG-TACAGT----AGAC-TTT-ATTCTTCCAATCTATT-TTTTCATACAATTATTATTATTAT
Reference ( family-814 ) : TTATG-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--GNACAGTGCTATTANTNCAAACTGGNCAANTACNGACATTATGTTCGGAAAC-AA-G-A-GTTT--GACNAA--GTNTTGAATAAAATANTATTGATNGCAAAAAAAATTCATCTNCANCCANAAA-TTAAATAAAA-A--A---A--GA-AC-TC-CGCTT----AACAA-A----CTTTAAACANCAT-ATTNNAA--AT-CTNTAT----AA-----TACAGAACGGTATATTG-CAANAGTAA-ACTGT-AANTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGN-CTATAAA--CC-------TCTTG----T---AA-TCT--A---AGATAT--AT-TTAT-TGATTCCCCTCCGGG-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCACG-TACAGT----AGAC-TTT-ATTCTTCCAATCTATT-TTTTCATACAATTATTATTATTAT
gi|20930 : TTATGCTCTAGTCTTGTT--GA-TTATATCAAAGAAAG--GAACAGTGCTATTATTACAAACTGGTCAATTACTGATATTCTATTTGGAAAC-AA-G-A-GTTT--GACCCA--GTGTTGAATAAACTATTATTGATAACAAAAAAAACCCATCTTCAACCATAAA-TTAAATAAAA-A--A---A--GA-AC-TC-TGTTT----AACAA-A----CTTTAAACATTAT-ATTCGAA--AT-CTTTAT----AA-----TACAGAAAGGTATATAG-CAAAAGCAA-ACTTT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGT-CAATAAA--CC-------TCTTG----T---AA-TCT--A---AGATAT--AT-TTAT-TGATTCCCCTCCGGG-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCAAG-TACAGT----AGAC-TTT-GTTTTTCCAATTT-TT-TTTTCATACAATTATCATTATTAT
gi|20931 : TTATG-TCTAATCTTGTT--GA-CTATATCAAAGAAAA--GAACAGTGCTATTATTACAAACTGGTCAATTACTGATATTCTATTTGGAAAC-AAAG-A-GTTT--GACCCA--G-GTTGAATAAAATATTATTGATAACAAAAAAAAT-CATCTTCAACCATAAA-TTAAATAAAA----A---A--GA-AC-TC-TGTTT----AACAA-A----CTTTAAACATTAT-ATTCGAA--AT-CTTTAT----AA-----CACAGAAAGATATATAG-CAAAAGTAA-ACTTT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGT-CTATAAA--CC-------TCTTC----T---AA-TCT--A---AGATAC--A--TTAA-TGATTTCCCTCCGGGTTTT--TGTGGTTAAA-----TTGCT---TCA-----AATA-T-T---ATACA---ATCAAGTTACAGT----AGAC-TTG-ATCCTTCCAATCT-TT-TTTTCATACAATTATTATTATTAT
gi|20932 : TTATG-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--GAACAGTGCTATTATTACAAACTGGTCAGTTACTGATATTCTATTTGGAAAC-AAAG-A-GTTT--GACCCA--GTGTTGAATAAATTATTATTGATAACAAAAAAA--TAATTTTCAACCGTAAA-TTCAATAAAA-A--A------GA-AC-TC-TGTTT----AACAA-A----CTTTAAACATTAT-ATTCGAA--AT-CTTTAT----AA-----TACAGA----TATATAG-CAAAAGTAA-ACTGT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGT-CTATAAA--CC-------TCTTG----T---AA-TCC--A---AGATAC--AT-GTAT-TGATTCCCCTCCGGGTTTT--TGTGGTCAAA-----TTGCT---TTA-----ATTATT-T---AT---------ACG-TACAGT----AGAC-TCT-GTTCTTCCAATCT-TG-TTTTCATACAATTATTATTATTAT
gi|20933 : TTATG-TCTAGTCTTGCT--GA-CTATATCAAAGAAAA--TAACAGTGCTATTATTACAAACTGGTCAATTAATTATATTATATTTGGAAAC-AAAG-A-GTTT--GACCAA--GTGTTGAATAAATTATTATTGATAACAAACAAAAT-CATCTTCAACCATCAA-TTAAATATAA-A--A------GA-AC-TC-TGTTA----AACAA-A----CTTTAAACATTAT-ATCCAAA--AT-TTTTAT----AA-----TACAGAAAGATATAAAG-CAAAAGTAA-ACTTT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGT-CTATAAA--CC-------TCATG----T---AA-TCT--A---CGATAT--AT-TTAC-TGATTCCCTTCCGGA-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCAAG-TACAGT----AGAC-TTT-GTTCTTCCAATCTG-T-TTTTCATACAATTATTATTATTAT
gi|20934 : TTATA-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--CAACAGTGCTATTATTACAAACTGGTCAATTACTGATATTTTATTAAGAAACGAA-G-A-GTTT--GACTCA--GTGTTGAATAAAA------------------AAAT-CATCTTCAACCATAAA-TTAAAT-GAA-A--A---A--GA-AC-TC-TGTTT----AACAA-A----CTTTATACATTATGATT
gi|20935 : TTGTA-TCTGGTCTTGTC--GA-CTATATCAAAAAAAA--TAAGAATGCTGTTGTGACAGCCTGATCAACTACTGGTCGTATGTTTTGAAACAAA-A-A-GTTT--GACCCA--GTCTTGAATGACGTATTATTGATAATAAAAAAAGTCC-TCTTCAACAATAAT-TTAAAT-TAA-A--A---G--GA-TC-TC-TATTT----A
gi|20935 : AATAAAA-A--A---A--G-----TC-CTCTTC---AACAATA----ATTTAAA--------TTAAAAGGAT-CTCTATTTATAA-----TACAGAAAGAT-----G-CAAATGTAA-ACT-T-AAACGGGTA-GGC--TT-CGACACACT------------------AA--CC-------TCTTG----T---AA-TCT---------TATTAAT-TTGT-TGATTCCCCACCAGG-TTG--TGTAGGTAAA-----TTGTT---TTT-----AATATTGT---ATACA---ATCACG-CGCAGT----AAAC-TTA-CTTCTTACAAACTATG-TTTCCGTACAATTATTGTTGTTATtaatacagaaagatgcaaatgtaaacttaaacgggtaggcttcgacacactaacctcttgtaatcttattaatttgttgattccccaccaggttgtgtaggtaaattgtttttaatattgtatacaatcacgcgcagtaaacttacttcttacaaactatgtttccgtacaattattgttgttat
gi|20936 : ttgtatctggtcttgtcgactatatcaaaaaaaataagaatgctgttgtgacagcctgatcaactactggtcgtatgttttgaaacaaaaagtttgacccagtcttgaatgacgtattattgatTTATC-TCCTGT-TTGAT--GAACCATATTCGTGAAAAATGTATAG-GC-ACTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-A-A-TTTTT-GACAAA--GTTTTGAATAAAATAATATTAATTGCAAAGAAA-TTTATTTACACCCAGAAA-CT---TAAAA-C--AGTTA--AA-CC-TA-CACTT----GACAA------CTTTAAAAAACAT-ATTATAA--AT-CTGTAT----AA-----TACAGAACGGTATCTTG-CAACAATAA-ATTGT-AAA---ATACACACTTT-TGATATTATT---TGGAATGA-CTATAAG--CC-------ACTTA----T----A-TCT--
gi|20937 : TTATC-TCCTGT-TTGAT--GAACCATATTCGCGAAAAT-GTATAG-GC-ATTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-A-A-TTTTT-GACAAA--GTTTTAAATAAAATAATATTAATTGCATAGAAA-TTTATTTACACCCAGAAA-CT---TAAAA-C--AGTTA--AA-CC-TA-CACTT----GACAA------CTTTAAAAAACAT-ATTATAA--AT-CTGTAT----AA-----TACAGAACGGTATCTTG-CAACAATAA-ATTGTAAAATTCACA-CT---TT-TGATATTATT---TGAAATGA-CTATAAG--CCACTAATATCTTGATACT---AA-TTT--G---AAACAT--TT-TTCA-TGTTTCTCTTTCAGT-TTT--
gi|20938 : TCGTGTTTGAA-CCATATTCGCGAAAAATGTATA-TGC-ATTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-A-A-TTTTT-GACAAA--GTTTTGAATAAAATAATATTAATTGCAAAGAAA-TGTATTGACACTCAGAAA-CT---TAAAA-C--AGTTA--AA-CC-TA-CACTT----GACAA------TTTTAAA-AACAT-ATTATAA--AT-CTGTAT----AA-----TACAGAACGGTATCTTG-CAACAATAA-ATTGT-AA
gi|20939 : A-TTATCTGAATGAAAA--GTGCAATACAGTAAATACAGACTGGTCATCTTCAGACATAATCTTTGGCAGT-AT-GAA-ATTC--GA--AACTGTTTTGAATAGGCTGCTATATACTGC-TAAACACTTCATATACTGTCAAA-----AAATGAAA-A--A---C--AATAT-TC-CTATTTTTGAAC--------CTTCAAACACTAT-ATT-AAA--ATGTTGTAT----GA-----AACAGAACGATGTATTGCCAAAAATAACATTG---AGGTGGAA-AAA--TT-TGAT-TTGTTA--TGGAA--C-CTATACATTCC-------CCTTA----T----A-TCTTAA---AAATAA--AGACTAT-TAATT
gi|20940 : AAAAAAT--GTATAG-GC-ATTAATTTGAATTGGACAAATACAGACATTATGTTCGTAAAT-AA---A-TTTTTTGACAAA--ATTTTGAATAAAATAATATTAATTGCAAAGAAA-TTTATTTACACCCAGAAA-CT---TAAAA-C--A---GTTAA-AC-TTACACTT----GACAA------CTTTAAAAAACAT-ATTTTAA---T-CTGTAT----AA-----CACAGAACGGTATCTTG-CAACAATAA-AATGT-AAA---ATACACACTTT-TGATATTATT---TGAAATGA-TTATAAG--CCACTATTATCTTGA---TACAAA-TTT--G---AAACAT---T-TTACATGTTACTCTTTCAGT-TTT--AAT--TTAGACACATTTGTTTGATTACCAATAATATT-T---ATAttacatttttcagatttatgtattataaagttgc
gi|20941 : ATTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-A-AAGTTT--GACAAA--GTCTTGAATAAAATAATATTAATTG-AAAAGAAATGAATTTACACTAAGAAA-CT---TAAAA-C--A---GTTAA-ACATA-CACGC----AAC-A-A----CTTTGAAAACCAT-ATCATAA--TT-CTGTAT----AAGATTCTGTAAAA---TATA-TG-CAAAAATAA-ATTGT-AAAAT-ACA-CAA--CTGTGATATTATT---TGGAATGA-TTATAAG--CC-------ACTTA----T----A-TCT------TGATAT--A
gi|20942 : ATTAATTTAGATTGGACAAATACAGAGATTATGCTCGGAAAT-AA-A-AAGTTT--GACAAA--GTCTTAAATAAAATAATATCAATTGCATAGAAA-TTTATTTACACTCAAAAACTTA--TAACA-GTTA---A---A-CC-TA-CACTT----GACAA------CTTTAAAAAACAT-ATTATAA--AT-CTGCGT----AA-----CACAGAACGGTATCTTG-CAACAACAA-ATTGT-AAAAT-ACA-GAA--TT-T--TGCTATTATCTGGAATGA-TTATAAG--CCACTAATATCTTGATA-T---AACTTT--G---AAACAT---T-TTACATGTTACTCTTTCAGT-TTTAATTTAGTCACA-----TTAGT---TTG--------ATT-TCAAATACATGTATTATT-T---GT----AGACATTTAATTTTATCAATC
gi|20943 : CCAA--GTGTTGAATAAATTATTATTGATAACAAAAAAA--TCATCTTCAACCATAAA-TTAAATAAAATA--A---A--------TC-TGTTT----AACAA-A----CTTTAAACATAAT-ATTTGAA--AT-ATTT------------------------------------GTAA-ACTTT-AATTTTATA-GGA--CT-TAATGCTCTT---TGGGAGGGTCTATTTA--TC-------TCTTG----T---AA-TCT--ATATATATAT--AT-TTAT-TGATTCCCCTCCGGG-TTTG-TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCACG-TACAGT----AGGC-TTT--TTCTTTCAATCT-TT-TTTTCATACAATTATTATTATAAT
gi|20944 : AAA-TTAAA-AAAA-A--A---A--GA-A--------------AAAAA-AAAGACTTTATACATTAT-ATTCGAA--AT-CTTTAT----AA-----TACAGAAAGATATATAA-CAATAGTAA-ACTTT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGC-CTATAAA--CC-------TCTTG----T---AA-TCT--A---ACATAT--AT-TTAT-TGATTCCCCTACGGG-TTTG-TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCAAG-TACAGC----AGAC-ATT-GTTCTTCCAATCT-TT-TTTTCATACAATTATTATTATTAT
gi|20945 : -TTT--TGTAGTTAAA-----CTGTC---CTA-----AATATT-T---ATGCA---ATCACA-TACAGT----AGAC-TTT-ATTCTTTCAATCTATTATTTTAATATAATTATTATTATTAT
gi|20946 : -TTT--TGTAGTTAAA-----CTGTC---CTA-----AATATT-T---ATACA---ATCACA-TACAGT----AGAC-TTT-ATTCTTTCAGTCTGTTATTTTCATAAACTTATTATTATTAT
gi|20947 : -TTT--TGTAGTTAAA-----TTGTT---CTA-----AATATC-C---ACACA---ATCACG-TACAGC----AGAC-TTT-ATTCTTTCAGTCTATT-TTTCCATAC-ATTAGTATTATGAT
gi|20948 : -TTT--TGTAGTTAAA-----GTGTT---CTA-----AATATT-T---ACACA---GTCACA-TACAGTCAGTAGAC-TTT-ATTCTTTCAATCTATT-TTTCCGTACAATGATTATT
blockSeqs : G C TG A AT A T T T A T T T G AG A TT C CT G A T A GTC T A T C AA GTT GTTAA TA A TACAC TTTG AAAGA C TT G CG GG G T TTAT GATTC A A ATA C A C T A TTTG C CT G C ATC G GT TT ACTAATA ATAC ACAA C ATAT G TAAT A T AA G CACAT TGA CCAAT G CAA TGT T CAGT A AA G A
blockSeqs : G C . A AT A T T T A T T T A AG A T C . G T T A CTT T A T . CA TA GTTAA A . CTGT C TA C TT . CG . . T . . A A ATA . A . G . TTTG C CT . C A G T . ACTATTA ATA A . TAA G AGA A T G G . . . . . . . . . A A A
blockSeqs : G C . . T A T T T A T T T . AG . T C . G T T A ATG T A T . AA A GTTAA A . CTGT . A C TT . CA . . T . . A A AAA . A . T . TTTG . . . C . G T . ACTAATA A A . A G AT . . G G . . . . . . . . . G A .
blockSeqs : A C . . . A T T T A T T T . GA . T T . G A T A AT T A T . AA A GTTA A . CTGT . A C TT . AA . . C . . C G CTT . A . G . ACGG . . . C . T T . . . A . A A AT . . . A . . . . . . . . . G G .
blockSeqs : A C . . . A T T T A T C T . G . . C . C G A T AT T A T . AA A GTTA A . CTGT . A A AC . AT . . G . . C G CTT . C . G . ATTC . . . A . T A . . . A . A A TT . . . A . . . . . . . . . C A .
blockSeqs : C C . . . T T A A T A A A . A . . A . T A A T AT A C G . AA A AG T . CTAT . A A AC . AT . . G . . C G CTT . C . G . GGTG . . . A . T A . . . A . G A AT . . . G . . . . . . . . . G A .
blockSeqs : C . . . . T T . A T A A A . A . . A . T A A T TT A C G . AA A AG C . CCTC . A C AC . AT . . G . . C A ATT . C . G . TTTT . . . G . T C . . . A . G G AT . . . G . . . . . . . . . A . .
blockSeqs : . . . . T . . A T A A A . A . . A . T A C T TT A C G . AA C GG C . ACAC . A A CT . TT . . G . . C G CTT . A . G . TTTG . . . A . T A . . . A . G A A . . . A . . . . . . . . . A . .
blockSeqs : . . T . . A A T C A . A . . A . T C A T TG A G A . A C AG C . ACAC . . A AC . AT . . G . . C G CTT . C . G . AAT . . . A . G A . . . A . A T T . . . A . . . . . . . . . A . .
blockSeqs : . T . . A T A A A . A . . A . T A A T TT A C G . . C CA A . ACAC . . A CC . AT . . G . . A A ATA . A . G . AAT . . . A . G A . . . . . . C T . . . A . . . . . . . . . A . .
blockSeqs : A T A A A . A . . A . C A A T TT A C G . . A AG A . CCTA . . C AC . TG . . G . . . . AT . C . T . A . . . C . . C . . . . . . . . . A . . . . . . . . . .
blockSeqs : A T A A A . . . . C . C A T A T A C A . . C G C . ACAC . . C TA . CG . . T . . . . . . T . T . A . . . C . . . . . . . . . . . . . . . .
blockSeqs : . . G T . . T T A T . . C G A . ACAC . . . TT . A . . T . . . . . . . . . . . .
blockSeqs : . . A A . . CTGT . . . . .
blockSeqs : . A . . . .
blockSeqCons : G* TT* A*****
originalCons : TTATG-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--GNACAGTGCTATTANTNCAAACTGGNCAANTACNGACATTATGTTCGGAAAC-AA-G-A-GTTT--GACNAA--GTNTTGAATAAAATANTATTGATNGCAAAAAAAATTCATCTNCANCCANAAA-TTAAATAAAA-A--A---A--GA-AC-TC-CGCTT----AACAA-A----CTTTAAACANCAT-ATTNNAA--AT-CTNTAT----AA-----TACAGAACGGTATATTG-CAANAGTAA-ACTGT-AANTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGN-CTATAAA--CC-------TCTTG----T---AA-TCT--A---AGATAT--AT-TTAT-TGATTCCCCTCCGGG-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCACG-TACAGT----AGAC-TTT-ATTCTTCCAATCTATT-TTTTCATACAATTATTATTATTAT
finalCons : TTATG-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--GNACAGTGCTATTANTNCAAACTGGNCAANTACNGACATTATGTTCGGAAAC-AA-G-A-GTTT--GACNAA--GTNTTGAATAAAATANTATTGATNGCAAAAAAATT-CATCTNCANCCANAAA-TTAAATAAAA-A--A---A--GA-AC-TC-CGCTT----AACAAA-----CTTTAAACANCAT-ATTNNAA--AT-CTNTAT----AA-----TACAGAACGGTATATTG-CAANAGTAA-ACTGT-AANTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGN-CTATAAA--CC-------TCTTG----T---AA-TCT--A---AGATAT--AT-TTAT-TGATTCCCCTCCGGG-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCACG-TACAGT----AGAC-TTT-ATTCTTCCAATCTATT-TTTTCATACAATTATTATTATTAT
Alignments
lowQualScore : 11 1 111 11 2222222 3333333 1111 111111 1
lowQualScore : 55 1 66 8 0 33 1 4 1 1 1 1 1 1 9 77 444 77 2 33 1 1 2 0 2 2 444 1 1 1 2 33 1 8888 0000000 44 2 33333 7777 7 777777 5 22 2 44 33 2 1 6666 77777 6 1 666 2 2 2 2 2 8888 6 88 3 1 888 5 55 44 0000000 5555 7777 3 333333 1 77777 7 5 99 1 77777 555 77777 3 555 555 3 7777 3 55 0 6 7
lowQualScore : .. . .. . . .. . . . . . . . . . .. ... .. . .. . . . . . . ... . . . . .. . .... ....... .. . ..... .... . ...... . .. . .. .. . . .... ..... . . ... . . . . . .... . .. . . ... . .. .. ....... .... .... . ...... . ..... . . .. . ..... ... ..... . ... ... . .... . .. . . .
lowQualScore : 22 1 11 0 1 66 0 4 2 0 0 0 0 0 2 44 333 33 0 99 0 1 0 4 0 6 666 0 0 0 7 66 1 4444 6666666 11 5 22222 8888 3 555555 0 77 7 88 99 9 0 1111 11111 1 1 555 9 0 9 5 9 5555 2 55 1 5 555 4 22 22 0000000 0000 7777 1 000000 6 22222 3 7 66 2 77777 444 77777 1 444 888 3 1111 3 44 1 0 3
consensus : TTATG-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--GNACAGTGCTATTANTNCAAACTGGNCAANTACNGACATTATGTTCGGAAAC-AA-GA-G-TTT--GACNAA--GTNTTGAATAAAATANTATTGATNGCAAAGAAA-TTCATCTNCANCCANAAA-TTAAATAAAA-A--A---A--GA-AC-TC-CGCTT----AACAA-A----CTTTAAACANCAT-ATTNNAA--AT-CTNTAT----AA-----TACAGAACGGTATATTG-CAANAGTAA-ACTGT-AANTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGN-CTATAAA--CC-------TCTTG----T---AA-TCT--A---AGATAT--AT-TTAT-TGATTCCCCTCCGGG-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCACG-TACAGT----AGAC-TTT-ATTCTTCCAATCTATT-TTTTCATACAATTATTATTATTAT
Reference ( family-814 ) : TTATG-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--GNACAGTGCTATTANTNCAAACTGGNCAANTACNGACATTATGTTCGGAAAC-AA-GA-G-TTT--GACNAA--GTNTTGAATAAAATANTATTGATNGCAAAAAAA-TTCATCTNCANCCANAAA-TTAAATAAAA-A--A---A--GA-AC-TC-CGCTT----AACAA-A----CTTTAAACANCAT-ATTNNAA--AT-CTNTAT----AA-----TACAGAACGGTATATTG-CAANAGTAA-ACTGT-AANTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGN-CTATAAA--CC-------TCTTG----T---AA-TCT--A---AGATAT--AT-TTAT-TGATTCCCCTCCGGG-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCACG-TACAGT----AGAC-TTT-ATTCTTCCAATCTATT-TTTTCATACAATTATTATTATTAT
gi|20930 : TTATGCTCTAGTCTTGTT--GA-TTATATCAAAGAAAG--GAACAGTGCTATTATTACAAACTGGTCAATTACTGATATTCTATTTGGAAAC-AA-GA-G-TTT--GACCCA--GTGTTGAATAAACTATTATTGATAACAAAAAAAACCCATCTTCAACCATAAA-TTAAATAAAA-A--A---A--GA-AC-TC-TGTTT----AACAA-A----CTTTAAACATTAT-ATTCGAA--AT-CTTTAT----AA-----TACAGAAAGGTATATAG-CAAAAGCAA-ACTTT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGT-CAATAAA--CC-------TCTTG----T---AA-TCT--A---AGATAT--AT-TTAT-TGATTCCCCTCCGGG-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCAAG-TACAGT----AGAC-TTT-GTTTTTCCAATTT-TT-TTTTCATACAATTATCATTATTAT
gi|20931 : TTATG-TCTAATCTTGTT--GA-CTATATCAAAGAAAA--GAACAGTGCTATTATTACAAACTGGTCAATTACTGATATTCTATTTGGAAAC-AAAGA-G-TTT--GACCCA--G-GTTGAATAAAATATTATTGATAACAAAAAAA-ATCATCTTCAACCATAAA-TTAAATAAAA----A---A--GA-AC-TC-TGTTT----AACAA-A----CTTTAAACATTAT-ATTCGAA--AT-CTTTAT----AA-----CACAGAAAGATATATAG-CAAAAGTAA-ACTTT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGT-CTATAAA--CC-------TCTTC----T---AA-TCT--A---AGATAC--A--TTAA-TGATTTCCCTCCGGGTTTT--TGTGGTTAAA-----TTGCT---TCA-----AATA-T-T---ATACA---ATCAAGTTACAGT----AGAC-TTG-ATCCTTCCAATCT-TT-TTTTCATACAATTATTATTATTAT
gi|20932 : TTATG-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--GAACAGTGCTATTATTACAAACTGGTCAGTTACTGATATTCTATTTGGAAAC-AAAGA-G-TTT--GACCCA--GTGTTGAATAAATTATTATTGATAACAAAAAAA-T-AATTTTCAACCGTAAA-TTCAATAAAA-A--A------GA-AC-TC-TGTTT----AACAA-A----CTTTAAACATTAT-ATTCGAA--AT-CTTTAT----AA-----TACAGA----TATATAG-CAAAAGTAA-ACTGT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGT-CTATAAA--CC-------TCTTG----T---AA-TCC--A---AGATAC--AT-GTAT-TGATTCCCCTCCGGGTTTT--TGTGGTCAAA-----TTGCT---TTA-----ATTATT-T---AT---------ACG-TACAGT----AGAC-TCT-GTTCTTCCAATCT-TG-TTTTCATACAATTATTATTATTAT
gi|20933 : TTATG-TCTAGTCTTGCT--GA-CTATATCAAAGAAAA--TAACAGTGCTATTATTACAAACTGGTCAATTAATTATATTATATTTGGAAACAAA-GA-G-TTT--GACCAA--GTGTTGAATAAATTATTATTGATAACAAACAAA-ATCATCTTCAACCATCAA-TTAAAT-ATA-A--A---A--GA-AC-TC-TGTTA----AACAA-A----CTTTAAACATTAT-ATCCAAA--AT-TTTTAT----AA-----TACAGAAAGATATAAAG-CAAAAGTAA-ACTTT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGT-CTATAAA--CC-------TCATG----T---AA-TCT--A---CGATAT--AT-TTAC-TGATTCCCTTCCGGA-TTT--TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCAAG-TACAGT----AGAC-TTT-GTTCTTCCAATCTG-T-TTTTCATACAATTATTATTATTAT
gi|20934 : TTATA-TCTAGTCTTGTT--GA-CTATATCAAAGAAAA--CAACAGTGCTATTATTACAAACTGGTCAATTACTGATATTTTATTAAGAAACGAA-GA-G-TTT--GACTCA--GTGTTGAATAAAA-------------AAA------TCATCTTCAACCATAAA-TTAAAT-GAA-A--A---A--GA-AC-TC-TGTTT----AACAA-A----CTTTATACATTATGATT
gi|20935 : TTGTA-TCTGGTCTTGTC--GA-CTATATCAAAAAAAA--TAAGAATGCTGTTGTGACAGCCTGATCAACTACTGGTCGTATGTTTTGAAAC-AA-AAAG-TTT--GACCCA--GTCTTGAATGACGTATTATTGATAATAAAAAAA-GTCCTCTTCAACAATAAT-TTAAAT-TAA-A--A---G--GA-TC-TC-TATTT----A
gi|20935 : AATAAAA-A--A---A--G-----TC-CTCTTC---AACAATA----ATTTAAA--------TTAAAAGGAT-CTCTATTTATAA-----TACAGAAAGAT-----G-CAAATGTAA-ACT-T-AAACGGGTA-GGC--TT-CGACACACT------------------AA--CC-------TCTTG----T---AA-TCT---------TATTAAT-TTGT-TGATTCCCCACCAGG-TTG--TGTAGGTAAA-----TTGTT---TTT-----AATATTGT---ATACA---ATCACG-CGCAGT----AAAC-TTA-CTTCTTACAAACTATG-TTTCCGTACAATTATTGTTGTTATtaatacagaaagatgcaaatgtaaacttaaacgggtaggcttcgacacactaacctcttgtaatcttattaatttgttgattccccaccaggttgtgtaggtaaattgtttttaatattgtatacaatcacgcgcagtaaacttacttcttacaaactatgtttccgtacaattattgttgttat
gi|20936 : ttgtatctggtcttgtcgactatatcaaaaaaaataagaatgctgttgtgacagcctgatcaactactggtcgtatgttttgaaacaaaaagtttgacccagtcttgaatgacgtattattgatTTATC-TCCTGT-TTGAT--GAACCATATTCGTGAAAAATGTATAG-GC-ACTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-AATT-TTT--GACAAA--GTTTTGAATAAAATAATATTAATTGCAAAGAAA-TTTATTTACACCCAGAAA-CT---TAAAA-C--AGTTA--AA-CC-TA-CACTT----GAC-A-A----CTTTAAAAAACAT-ATTATAA--AT-CTGTAT----AA-----TACAGAACGGTATCTTG-CAACAATAA-ATTGT-AAA---ATACACACTTT-TGATATTATT---TGGAATGA-CTATAAG--CC-------ACTTA----T----A-TCT--
gi|20937 : TTATC-TCCTGT-TTGAT--GAACCATATTCGCGAAAAT-GTATAG-GC-ATTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-AATT-TTT--GACAAA--GTTTTAAATAAAATAATATTAATTGCATAGAAA-TTTATTTACACCCAGAAA-CT---TAAAA-C--AGTTA--AA-CC-TA-CACTT----GAC-A-A----CTTTAAAAAACAT-ATTATAA--AT-CTGTAT----AA-----TACAGAACGGTATCTTG-CAACAATAA-ATTGTAAAATTCACA-CT---TT-TGATATTATT---TGAAATGA-CTATAAG--CCACTAATATCTTGATACT---AA-TTT--G---AAACAT--TT-TTCA-TGTTTCTCTTTCAGT-TTT--
gi|20938 : TCGTGTTTGAA-CCATATTCGCGAAAAATGTATA-TGC-ATTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAAT-AA-AA-T-TTTT-GACAAA--GTTTTGAATAAAATAATATTAATTGCAAAGAAA-TGTATTGACACTCAGAAA-CT---TAAAA-C--AGTTA--AA-CC-TA-CACTT----GACAA------TTTTAAA-AACAT-ATTATAA--AT-CTGTAT----AA-----TACAGAACGGTATCTTG-CAACAATAA-ATTGT-AA
gi|20939 : A-TTATCTGAATGAAAA--GTGCAATACAGTAAATACAGACTGGTCATCTTCAGACATAATCTTTGGCAGT-AT-GA-AATTC--GA--AACTGTTTTGAATAGGCTGCTATATACTGCTAAACAC-TTCATATACTGTCAAAAA-----ATGAAA-A--A---C--AATAT-TC-CTATTTTTGAAC--------CTTCAAACACTAT-ATTA-AA--ATGTTGTAT----GA-----AACAGAACGATGTATTGCCAAAAATAACATTG---AGGTGGAA-AAA--TT-TGAT-TTGTTA--TGGAA--C-CTATACATTCC-------CCTTA----T----A-TCTTAA---AAATAA--AGACTAT-TAATT
gi|20940 : AAAAAAT--GTATAG-GC-ATTAATTTGAATTGGACAAATACAGACATTATGTTCGTAAAT-AA--A-T-TTTTTGACAAA--ATTTTGAATAAAATAATATTAATTGCAAAGAAA-TTTATTTACACCCAGAAA-CT---TAAAA-C--A---GTTAA-AC-TTACACTT----GAC-A-A----CTTTAAAAAACAT-ATTTT-A--AT-CTGTAT----AA-----CACAGAACGGTATCTTG-CAACAATAA-AATGT-AAA---ATACACACTTT-TGATATTATT---TGAAATGA-TTATAAG--CCACTATTATCTTGA---TACAAA-TTT--G---AAACAT---T-TTACATGTTACTCTTTCAGT-TTT--AAT--TTAGACACATTTGTTTGATTACCAATAATATT-T---ATAttacatttttcagatttatgtattataaagttgc
gi|20941 : ATTAATTTAAATTGGACAAATACAGACATTATGTTCGGAAATAAA-AA-G-TTT--GACAAA--GTCTTGAATAAAATAATATTAATTGAAAAGAAA-TGAATTTACACTAAGAAA-CT---TAAAA-C--A---GTTAA-ACATA-CACGC----AAC-A-A----CTTTGAAAACCAT-ATCATAA--TT-CTGTAT----AAGATTCTGTAAAA---TATA-TG-CAAAAATAA-ATTGT-AAAAT-ACA-CAA--CTGTGATATTATT---TGGAATGA-TTATAAG--CC-------ACTTA----T----A-TCT------TGATAT--A
gi|20942 : ATTAATTTAGATTGGACAAATACAGAGATTATGCTCGGAAAT-AA-AAAG-TTT--GACAAA--GTCTTAAATAAAATAATATCAATTGCATAGAAA-TTTATTTACACTCAAAAACTTA--TAACA-GTTA---A---A-CC-TA-CACTT----GACAA------CTTTAAAAAACAT-ATTATAA--AT-CTGCGT----AA-----CACAGAACGGTATCTTG-CAACAACAA-ATTGT-AAAAT-ACA-GAA--TT-T--TGCTATTATCTGGAATGA-TTATAAG--CCACTAATATCTTGATA-T---AACTTT--G---AAACAT---T-TTACATGTTACTCTTTCAGT-TTTAATTTAGTCACA-----TTAGT---TTG--------ATT-TCAAATACATGTATTATT-T---GT----AGACATTTAATTTTATCAATC
gi|20943 : CCAA--GTGTTGAATAAATTATTATTGATAACAAAAAAA-T-CATCTTCAACCATAAA-TTAAATAAAATA--A---A--------TC-TGTTT----AACAA-A----CTTTAAACATAAT-ATTTGAA--AT-ATTT------------------------------------GTAA-ACTTT-AATTTTATA-GGA--CT-TAATGCTCTT---TGGGAGGGTCTATTTA--TC-------TCTTG----T---AA-TCT--ATATATATAT--AT-TTAT-TGATTCCCCTCCGGG-TTTG-TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCACG-TACAGT----AGGC-TTT--TTCTTTCAATCT-TT-TTTTCATACAATTATTATTATAAT
gi|20944 : AAA-TTAAA-AAAA-A--A---A--GA-A--------------AAAAA-AAAGACTTTATACATTAT-ATTCGAA--AT-CTTTAT----AA-----TACAGAAAGATATATAA-CAATAGTAA-ACTTT-AATTTGGTA-GGA--TT-TGATGCTCTT---TGGGAGGC-CTATAAA--CC-------TCTTG----T---AA-TCT--A---ACATAT--AT-TTAT-TGATTCCCCTACGGG-TTTG-TGTGGTTAAA-----TTGCT---TTA-----AATATT-T---ATACA---ATCAAG-TACAGC----AGAC-ATT-GTTCTTCCAATCT-TT-TTTTCATACAATTATTATTATTAT
gi|20945 : -TTT--TGTAGTTAAA-----CTGTC---CTA-----AATATT-T---ATGCA---ATCACA-TACAGT----AGAC-TTT-ATTCTTTCAATCTATTATTTTAATATAATTATTATTATTAT
gi|20946 : -TTT--TGTAGTTAAA-----CTGTC---CTA-----AATATT-T---ATACA---ATCACA-TACAGT----AGAC-TTT-ATTCTTTCAGTCTGTTATTTTCATAAACTTATTATTATTAT
gi|20947 : -TTT--TGTAGTTAAA-----TTGTT---CTA-----AATATC-C---ACACA---ATCACG-TACAGC----AGAC-TTT-ATTCTTTCAGTCTATT-TTTCCATAC-ATTAGTATTATGAT
gi|20948 : -TTT--TGTAGTTAAA-----GTGTT---CTA-----AATATT-T---ACACA---GTCACA-TACAGTCAGTAGAC-TTT-ATTCTTTCAATCTATT-TTTCCGTACAATGATTATT