lowQualScore : 1 22222222 4444444444444444444444444444444444444444 1111 11 1111111111 111111111 1
lowQualScore : 6 6 0 3 9 44 4 44 33333333 8888888888888888888888888888888888888888 3333 2 5555 1 55 2 2 0 5 77777 2 00 33 2 2 0 3 88888 555 2 55 55 777 0 3 8888888888 555555555 3 5 555 3
lowQualScore : . . . . . .. . .. ........ ........................................ .... . .... . .. . . . . ..... . .. .. . . . . ..... ... . .. .. ... . . .......... ......... . . ... .
lowQualScore : 0 0 9 1 2 55 8 22 55555555 3333333333333333333333333333333333333333 8888 7 7777 1 77 2 5 1 1 55555 5 33 99 9 7 7 8 33333 888 6 00 00 555 5 1 8888888888 555555555 1 0 444 1
consensus : TTGTTCTGCTATTCGATTTTACCGACGCTAT-TTT-AAC-CGCTCTGCG--ATT---CT---GCAA---------A---C--------A------C------A---AATG--A-CT-CTAT----GTAATGTAGGNCACAGCAATAT-TAAATANGTGTTATCAATA-A---T-TGTTCATACCGTT--TAT-GAAA-CAACAAACTGATAGGGAAACTGCTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
Reference ( gi|134556 ) : TTGTTCTGTTATTTGACTTTACCGACGCTAT-TTT-AAT-CGCTCTGTG--ATT---TT---ACAA---------A---C--------A------T------A---AATG--A-CT-CTAT----GTAATGTGGAGCACAGCAATAT-TAAATAGGTGTTATCAATA-A---T-TGTTCATACCGCT--TAT-GAAA-CAACAAACTGATAAGGAAACTGCTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCAATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
gi|134557 : TTGTTCTGCTATTCGA-TTTACCGACGCTAT-TTT-AAC-CGTTCTGCG--ATG---GT---GCAA---------A---C--------A------C------A---AATG--A-CT-CTAT----GTAATGTAAAGCACAGCAATAT-ACAATAGGTGTTATCAATA-A---T-TGTTCATACCGTT--TAT-GAAA-CAACAAACTGATAAGGAAACTGCTTT-----AATATTTTA---TACTAATAGTGTTC--ATAGCTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACAG-TTCTGATCTAATATTCAGTTTATAAAAA
gi|134559 : TTGTTCTGCTATTCGATTTTACCGACGCTAT-TTT-TAC-CGCTCTGCG--ATT---CT---GTAA---------A---C--------A------C------A---AATG--A-CT-CTAT----GTACTGTGGAGCACAGCAATAT-TAAATATGTGTTGTCAATA-A---T-TGTTCATACTGTT--TTT-GAAA-CAACAAACTGATAGGGAAACTGTTTT-----AATATTTAA---TATTAATAGCGTTC--ATAGTTACACAA--TAT--AAAGCA-A----------TCACA--A------CTGACGGT-TTATTCCATTT---ATATACAA-TTTTGATCTAATATTCAGTTTATAATAA
gi|134560 : TTGTTCTGCTATTCGATTTTAGCGACGCTAT-TTT-AAC-CGCTCTGCG--ATT---CT---GCAA---------A---C--------A------C------A---AATG--A-CT-CTAT----GTAATGTGGAGCACAGCAATAT-TAAATGGGTGTTATCAATA-A---T-TGTTCATACCGTT--TAT-GAAA-CAACAAACTGATGGGAAAACTGCTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACCG-TTT
gi|134558 : TTGTTCTGCTATTCGATTTTACCGACGCTAT-TTT-AAC-CGTTCTGCG--ATG---CT---ACAA---------A---C--------A------C------A---AATG--A-TT-CAAT----G--ATTCA----ACAGCAATAT-ACAATAGGTGTTATCAACA-A---T-TGTTCATTCC-TT--TAT-GTAA-CAACAAATTGATAAGGAAACTGCTTT-----AATATTGTA---TATTAATAGTATTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACGG-TTTTGATCTAATATTCAATTTATAGTAA
gi|134561 : TTGTTCTGCTATTCGATTTTACCGACGCTTT-TTT-AAC-TGCTCTGCG--ATT---CT---TCAA---------A---C--------A------C------A---AATG--A-CT-CTAT----GTAATGTGGAACACAGCAACAT-TAAATAGGCGTTATCAATA-A---T-GGTTCATACC
gi|134562 : TGCTATTCGATTTTACAGGCGCTAT-TTC-AAT-CGCTCTGCG--ATT---CT---GCAA---------A---T--------A------C------A---AATG--A-CT-TTAT----GTAATGTGGAGCACAGCAATAT-TAGATAGGTGTTATCAATA-A---T-TGTTCATATCGTT--TAT-GAAA-CAACAAACTTATAAGGAAACTGCTTT-----AATATTTTA---TATAAATAGTGTTC--ATAGTTACACAG--TAA--ACAGCA-A----------TCACA--A------TTAATGGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTAAGTTTATAGTAA
gi|134563 : TGCTATTCGATTTTACAGGTGCTAT-TTC-AAT-CGCTCTGCA--ATT---CT---GCAA---------A---C--------A------C------A---AATG--A-CT-TTAT----GTAATTTGGAGCACAGCAATAT-TAGATAGGTGTTATCAATA-A---T-TGTTCATATCGTT--TAT-GAAA-CAACAAACTTATAAGGAAACTGCTTA-----AATATGTTA---TATGAATAGTGTTC--ATAGTTTCACAG--TAA--ACAGCA-A----------TCACA--A------TTAATGGT-TTATTCCATTTATAATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
gi|134565 : TTTAC-GATTTTAT-TTA-AAC-CGCTCTGCG--ATTCTGTT---ACAATATTCATTCA---T--------A------T------ATACACTA--C-CT-CTGT----GTTATGTAGGTCACAACAATTT-TAACTACTTATTACTAA-A-A---TGTGCTTCTACCTTT--TTTAAAAA-CAACAAATTTAT
gi|134564 : TTATCCACGCTAT-TTTTAAC-CCCTCT-TGCTATT---CTGTAACAA---------GATTC--------ACTCCTGT------A---CAC---A-CT-CCATTTGTGTCATTTAGGTCACAGCAACTT-TAAATATGTGTTGTTTATA-T---T-TTTTCATA
gi|134566 : tgcgattgtattgACC-ACGCTAT-TTT-AATTCGCTCTGCA--ATT---CT---GTAA---------A---T--------C------C------------TG--C-CT-CTAT----GTAATAAAGGTCACAGCAATAT-TAAACATGTGTTATTAATA-T---G-TATCTGTACTTTT--TAT-GATA-GGACAAACTGCT-AGTTCACTG----------ATATTGTAATGTATAAATAA-GTCCATATAGTAACAAAAACTATCAATAGTGTATCT-------TCATA--GTATACTTTGATGGTATTATTCCATTT---TTAT--TG-TTTTGTT----TATTCAGTATATA
gi|134568 : CGATTCTAT-TTTTAAC-CGCTCTGCG--ATT---CTGTAACAA---------GAGTC--------A------TTCCTGTA---AAAGCTA-CTTCTGT----GTTATGTAGGTCACAATAATTT-TAACTATTTGTTGCTAATA-T---T-TGCTTCTACCTTT--TAT-GAAA-CAACACATTTATGA-GATACTGCCGT-----CATAT
gi|134567 : CGATTCTAT-TTTTAAT-CGCTCTGCA--ATT---CTGTAACAAG--------A---CTCATTCCTG------T------A---AACGCTACCT-CTGT----GTTATGTAAGTCACACTAATTT-TAACTATTTGTTGCTAATATATGCT-TCTTCAT----TT--TCT-AAAAGCAACAAACGTAT-GGGATACTAC
gi|134569 : CTATGTTT-AAC-CGCTCTGCC--ATT---CTGTAACAA---------AACTC--------ATTCCTGT------A---AACGCTACCT-CTGT----GTTATGTAGGTCACAATAATTT-TAACTACTTGTTGCCAATA-T---A-TGCTTCTACCTTTTCTAT--AAA-CAACAAA
gi|134570 : AA---------A---C--------A-------------G---AATG-------TTAT----GTA-TGTA----ACAGCTTTTG-TAAATAAGTGTTATTACAA-C---T-TGTTCGTACCGTT--AAT-GAAA-CGAAAAACTGCTCTGAAAACTGC--C-----ATTATGTTC---TATTGATAG-GTTC--ATGTTTACACGA--TAA--GTAGTA-ATAAAGTCTTGTCATATTACACT--TTAACGTT-TTATTCCATTT---AT----AG-TTTTGGTTTAATATTCAGTTTATAATAA
gi|134571 : --A-CT-GTAT----ATAA-ATGGAATAAACCA---T-CAA----GTGT-ATTAACA-A---T-TGTTCATACCGTT--TAT-GAAA-CAACAAACTGATAGGGAAACTGCTTTTAATTAATATTT------ATTAATAGCGTCC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACAATTTTTGATCTAATGT
gi|134572 : caaaATATATATATACGTGTTGTTAATA-T---T-TGCTCATATTTTT--AAT-GGAA-CAACAAATTTATGGGGAAACTACTGT-------TATCGTA---TATT
gi|134573 : AAA-CAACAAACTGATAGGGAAACTGTTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACTCAA--TA---A-AGCA-A----------TCACA--A------CTGACGGT-TTATTCCATTT---ATATACAA-TTTTGATCTAATATTGAGTTTATAATAA
gi|134574 : TTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACTGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
gi|134571 : A-A----------T-ACA--C------TTGATGGT-TTATTCCATTT---ATATACAG-TTTTG
gi|134575 : A-A----------T-ACA--C------TTGATGGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAAaacaattgttcataccgtttatgaaacaacaaactgatagggaaactgcttttaattaatatttattaatagcgtccatagttacacaatatatagcaatcacaattgacggtttattccatttatatacaatttttgatctaatgt
Alignments
lowQualScore : 111 44444444444444444444444444444444444444444 11 1111111111111111 1111111111 111111
lowQualScore : 4 2 8 2 2 000 11111111111111111111111111111111111111111 11 8 2 8888888888888888 2 1 0 2 1 22 666 3 2 2 2 1 77777 555 1 44 44 666 2 7777777777 33 444444 2 555 2
lowQualScore : . . . . . ... ......................................... .. . . ................ . . . . . .. ... . . . . . ..... ... . .. .. ... . .......... .. ...... . ... .
lowQualScore : 0 9 6 9 9 000 22222222222222222222222222222222222222222 88 6 9 9999999999999999 9 9 8 5 0 44 555 3 7 5 5 9 77777 444 7 66 66 222 9 5555555555 99 333333 9 000 9
consensus : TTGTTCTGCTATTCGATT-TTACCGACGCTAT-TTT-AAC-CGCTCT-GCGATTCTG---CAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTNATGTAGGNCACAGCAATAT-TAAATANGTGTTATCAATA-AT---TGTTCATACCGTTTAT-G-AAA-CAACAAACTGATAGGGAAACTGCTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
Reference ( family-803 ) : TTGTTCTGCTATTCGATT-TTACCGACGCTAT-TTT-AAC-CGCTCT-GCGATTCTG---CAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTAATGTAGGNCACAGCAATAT-TAAATANGTGTTATCAATA-AT---TGTTCATACCGTTTAT-G-AAA-CAACAAACTGATAGGGAAACTGCTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
gi|134556 : TTGTTCTGTTATTTGACT-TTACCGACGCTAT-TTT-AAT-CGCTCT-GTGATTTTA---CAA-----------A---CA-------------T----------AAATG--AC-T-C----------------TATGTAATGTGGAGCACAGCAATAT-TAAATAGGTGTTATCAATA-AT---TGTTCATACCGCTTAT-G-AAA-CAACAAACTGATAAGGAAACTGCTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCAATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
gi|134557 : TTGTTCTGCTATTCGATT-T-ACCGACGCTAT-TTT-AAC-CGTTCT-GCGATGGTG---CAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTAATGTAAAGCACAGCAATAT-ACAATAGGTGTTATCAATA-AT---TGTTCATACCGTTTAT-G-AAA-CAACAAACTGATAAGGAAACTGCTTT-----AATATTTTA---TACTAATAGTGTTC--ATAGCTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACAG-TTCTGATCTAATATTCAGTTTATAAAAA
gi|134558 : TTGTTCTGCTATTCGATT-TTACCGACGCTAT-TTT-AAC-CGTTCT-GCGATGCTA---CAA-----------A---CA-------------C----------AAATG--AT-T-C----------------AATG--ATTCA----ACAGCAATAT-ACAATAGGTGTTATCAACA-AT---TGTTCATTCC-TTTAT-G-TAA-CAACAAATTGATAAGGAAACTGCTTT-----AATATTGTA---TATTAATAGTATTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACGG-TTTTGATCTAATATTCAATTTATAGTAA
gi|134559 : TTGTTCTGCTATTCGATT-TTACCGACGCTAT-TTT-TAC-CGCTCT-GCGATTCTG---TAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTACTGTGGAGCACAGCAATAT-TAAATATGTGTTGTCAATA-AT---TGTTCATACTGTTTTT-G-AAA-CAACAAACTGATAGGGAAACTGTTTT-----AATATTTAA---TATTAATAGCGTTC--ATAGTTACACAA--TAT--AAAGCA-A----------TCACA--A------CTGACGGT-TTATTCCATTT---ATATACAA-TTTTGATCTAATATTCAGTTTATAATAA
gi|134560 : TTGTTCTGCTATTCGATT-TTAGCGACGCTAT-TTT-AAC-CGCTCT-GCGATTCTG---CAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTAATGTGGAGCACAGCAATAT-TAAATGGGTGTTATCAATA-AT---TGTTCATACCGTTTAT-G-AAA-CAACAAACTGATGGGAAAACTGCTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACCG-TTT
gi|134561 : TTGTTCTGCTATTCGATT-TTACCGACGCTTT-TTT-AAC-TGCTCT-GCGATTCTT---CAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTAATGTGGAACACAGCAACAT-TAAATAGGCGTTATCAATA-AT---GGTTCATACC
gi|134562 : TGCTATTCGATT-TTACAGGCGCTAT-TTC-AAT-CGCTCT-GCGATTCTG---CAA-----------A---TA-------------C----------AAATG--AC-T-T----------------TATGTAATGTGGAGCACAGCAATAT-TAGATAGGTGTTATCAATA-AT---TGTTCATATCGTTTAT-G-AAA-CAACAAACTTATAAGGAAACTGCTTT-----AATATTTTA---TATAAATAGTGTTC--ATAGTTACACAG--TAA--ACAGCA-A----------TCACA--A------TTAATGGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTAAGTTTATAGTAA
gi|134563 : TGCTATTCGATT-TTACAGGTGCTAT-TTC-AAT-CGCTCT-GCAATTCTG---CAA-----------A---CA-------------C----------AAATG--AC-T-T----------------TATGTAATTTGGAGCACAGCAATAT-TAGATAGGTGTTATCAATA-AT---TGTTCATATCGTTTAT-G-AAA-CAACAAACTTATAAGGAAACTGCTTA-----AATATGTTA---TATGAATAGTGTTC--ATAGTTTCACAG--TAA--ACAGCA-A----------TCACA--A------TTAATGGT-TTATTCCATTTATAATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
gi|134564 : TGCGATTGTATTGTTATCCACGCTAT-TTTTAAC-CCCTCTTGCTATTCTG---TAA---------------CA-------------A----------GATTC--AC-T-CCTGTACACACTCCATTTGTGTCATTTAGGTCACAGCAACTT-TAAATATGTGTTGTTTATA-TT---TTTTCATA
gi|134565 : T-TTAC-GATTTTAT-TTA-AAC-CGCTCT-GCGATTCTGTTACAATATTCATTCATA---TA-------------T----------ACACT--ACCT-C----------------TGTGTTATGTAGGTCACAACAATTT-TAACTACTTATTACTAA-A-ATG--TGCTTCTACCTTTTTTAA-AAA-CAACAAATTTAT
gi|134566 : ACC-ACGCTAT-TTT-AATTCGCTCT-GCAATTCTG---TAA-----------A---TC-------------C-------------TG--CC-T-C----------------TATGTAATAAAGGTCACAGCAATAT-TAAACATGTGTTATTAATA-TG---TATCTGTACTTTTTAT-G-ATA-GGACAAACTGCTAG------TTCACT-----GATATTGTAATGTATAAATAA-GTCCATATAGTAACAAAAACTATCAATAGTGTATCT-------TCATA--GTATACTTTGATGGTATTATTCCATTT---TTAT--TG-TTTTGTT----TATTCAGTATATA
gi|134567 : CGATTCTAT-TTTTAAT-CGCTCT-GCAATTCTG---TAACA---------A---GA-------------CTCATTCCTGTAAACGCTACCT-C----------------TGTGTTATGTAAGTCACACTAATTT-TAACTATTTGTTGCTAATATATGCTTCTTCAT----TTTCT-A-AAAGCAACAAACGTAT-GGGATACTAC
gi|134568 : CGATTCTAT-TTTTAAC-CGCTCT-GCGATTCTG---TAA---------------CAAGAGTCATTCCTGT----------AAAAGCTAC-TTC----------------TGTGTTATGTAGGTCACAATAATTT-TAACTATTTGTTGCTAATA-TT---TGCTTCTACCTTTTAT-G-AAA-CAACACATTTAT-GAGATACTGCCGT-----CATAT
gi|134569 : CTATGTTT-AAC-CGCTCT-GCCATTCTGTAACAA-----------AACTCA-------------TTCCTGT----AAACGCTACCT-C----------------TGTGTTATGTAGGTCACAATAATTT-TAACTACTTGTTGCCAATA-TA---TGCTTCTACCTTTTCT-ATAAA-CAACAAA
gi|134570 : ATGTTATGTATGTAACAGCTTTTG-TAAATAAGTGTTATTACAA-CT---TGTTCGTACCGTTAAT-G-AAA-CGAAAAACTGCTCTGAAAACTGC--C-----ATTATGTTC---TATTGATAG-GTTC--ATGTTTACACGA--TAA--GTAGTA-ATAAAGTCTTGTCATATTACACT--TTAACGTT-TTATTCCATTT---AT----AG-TTTTGGTTTAATATTCAGTTTATAATAA
gi|134571 : aaacagaA-A----------T-ACA--C------TTGATGGT-TTATTCCATTT---ATATACAG-TTTTG
gi|134571 : AAGTGT-ATTAACA-AT---TGTTCATACCGTTTAT-G-AAA-CAACAAACTGATAGGGAAACTGCTTTTAATTAATATTT------ATTAATAGCGTCC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACAATTTTTGATCTAATGTaacaattgttcataccgtttatgaaacaacaaactgatagggaaactgcttttaattaatatttattaatagcgtccatagttacacaatatatagcaatcacaattgacggtttattccatttatatacaatttttgatctaatgt
gi|134572 : caaaactgtatataaatggaataaaccatcATATATATATACGTGTTGTTAATA-TT---TGCTCATATTTTTAAT-G-GAA-CAACAAATTTATGGGGAAACTACTGT-------TATCGTA---TATT
gi|134573 : -AAA-CAACAAACTGATAGGGAAACTGTTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACTCAA--TA---A-AGCA-A----------TCACA--A------CTGACGGT-TTATTCCATTT---ATATACAA-TTTTGATCTAATATTGAGTTTATAATAA
gi|134574 : TTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACTGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
gi|134575 : A-A----------T-ACA--C------TTGATGGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
Alignments
lowQualScore : 111 44444444444444444444444444444444444444444 11 1111111111111111 1111111111 111111
lowQualScore : 4 2 8 2 2 000 11111111111111111111111111111111111111111 11 8 2 8888888888888888 1 1 0 2 1 22 666 3 2 2 2 1 77777 555 1 44 44 666 2 7777777777 33 444444 2 555 2
lowQualScore : . . . . . ... ......................................... .. . . ................ . . . . . .. ... . . . . . ..... ... . .. .. ... . .......... .. ...... . ... .
lowQualScore : 0 9 6 9 9 000 22222222222222222222222222222222222222222 88 6 9 9999999999999999 9 9 8 5 0 44 555 3 7 5 5 9 77777 444 7 66 66 222 9 5555555555 99 333333 9 000 9
consensus : TTGTTCTGCTATTCGATT-TTACCGACGCTAT-TTT-AAC-CGCTCT-GCGATTCTG---CAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTNATGTAGGNCACAGCAATAT-TAAATANGTGTTATCAATA-AT---TGTTCATACCGTTTAT-G-AAA-CAACAAACTGATAGGGAAACTGCTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
Reference ( family-803 ) : TTGTTCTGCTATTCGATT-TTACCGACGCTAT-TTT-AAC-CGCTCT-GCGATTCTG---CAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTNATGTAGGNCACAGCAATAT-TAAATANGTGTTATCAATA-AT---TGTTCATACCGTTTAT-G-AAA-CAACAAACTGATAGGGAAACTGCTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
gi|134556 : TTGTTCTGTTATTTGACT-TTACCGACGCTAT-TTT-AAT-CGCTCT-GTGATTTTA---CAA-----------A---CA-------------T----------AAATG--AC-T-C----------------TATGTAATGTGGAGCACAGCAATAT-TAAATAGGTGTTATCAATA-AT---TGTTCATACCGCTTAT-G-AAA-CAACAAACTGATAAGGAAACTGCTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCAATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
gi|134557 : TTGTTCTGCTATTCGATT-T-ACCGACGCTAT-TTT-AAC-CGTTCT-GCGATGGTG---CAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTAATGTAAAGCACAGCAATAT-ACAATAGGTGTTATCAATA-AT---TGTTCATACCGTTTAT-G-AAA-CAACAAACTGATAAGGAAACTGCTTT-----AATATTTTA---TACTAATAGTGTTC--ATAGCTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACAG-TTCTGATCTAATATTCAGTTTATAAAAA
gi|134558 : TTGTTCTGCTATTCGATT-TTACCGACGCTAT-TTT-AAC-CGTTCT-GCGATGCTA---CAA-----------A---CA-------------C----------AAATG--AT-T-C----------------AATG--ATTCA----ACAGCAATAT-ACAATAGGTGTTATCAACA-AT---TGTTCATTCC-TTTAT-G-TAA-CAACAAATTGATAAGGAAACTGCTTT-----AATATTGTA---TATTAATAGTATTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACGG-TTTTGATCTAATATTCAATTTATAGTAA
gi|134559 : TTGTTCTGCTATTCGATT-TTACCGACGCTAT-TTT-TAC-CGCTCT-GCGATTCTG---TAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTACTGTGGAGCACAGCAATAT-TAAATATGTGTTGTCAATA-AT---TGTTCATACTGTTTTT-G-AAA-CAACAAACTGATAGGGAAACTGTTTT-----AATATTTAA---TATTAATAGCGTTC--ATAGTTACACAA--TAT--AAAGCA-A----------TCACA--A------CTGACGGT-TTATTCCATTT---ATATACAA-TTTTGATCTAATATTCAGTTTATAATAA
gi|134560 : TTGTTCTGCTATTCGATT-TTAGCGACGCTAT-TTT-AAC-CGCTCT-GCGATTCTG---CAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTAATGTGGAGCACAGCAATAT-TAAATGGGTGTTATCAATA-AT---TGTTCATACCGTTTAT-G-AAA-CAACAAACTGATGGGAAAACTGCTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACCG-TTT
gi|134561 : TTGTTCTGCTATTCGATT-TTACCGACGCTTT-TTT-AAC-TGCTCT-GCGATTCTT---CAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTAATGTGGAACACAGCAACAT-TAAATAGGCGTTATCAATA-AT---GGTTCATACC
gi|134562 : TGCTATTCGATT-TTACAGGCGCTAT-TTC-AAT-CGCTCT-GCGATTCTG---CAA-----------A---TA-------------C----------AAATG--AC-T-T----------------TATGTAATGTGGAGCACAGCAATAT-TAGATAGGTGTTATCAATA-AT---TGTTCATATCGTTTAT-G-AAA-CAACAAACTTATAAGGAAACTGCTTT-----AATATTTTA---TATAAATAGTGTTC--ATAGTTACACAG--TAA--ACAGCA-A----------TCACA--A------TTAATGGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTAAGTTTATAGTAA
gi|134563 : TGCTATTCGATT-TTACAGGTGCTAT-TTC-AAT-CGCTCT-GCAATTCTG---CAA-----------A---CA-------------C----------AAATG--AC-T-T----------------TATGTAATTTGGAGCACAGCAATAT-TAGATAGGTGTTATCAATA-AT---TGTTCATATCGTTTAT-G-AAA-CAACAAACTTATAAGGAAACTGCTTA-----AATATGTTA---TATGAATAGTGTTC--ATAGTTTCACAG--TAA--ACAGCA-A----------TCACA--A------TTAATGGT-TTATTCCATTTATAATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
gi|134564 : TGCGATTGTATTGTTATCCACGCTAT-TTTTAAC-CCCTCTTGCTATTCTG---TAA---------------CA-------------A----------GATTC--AC-T-CCTGTACACACTCCATTTGTGTCATTTAGGTCACAGCAACTT-TAAATATGTGTTGTTTATA-TT---TTTTCATA
gi|134565 : T-TTAC-GATTTTAT-TTA-AAC-CGCTCT-GCGATTCTGTTACAATATTCATTCATA---TA-------------T----------ACACT--ACCT-C----------------TGTGTTATGTAGGTCACAACAATTT-TAACTACTTATTACTAA-A-ATG--TGCTTCTACCTTTTTTAA-AAA-CAACAAATTTAT
gi|134566 : ACC-ACGCTAT-TTT-AATTCGCTCT-GCAATTCTG---TAA-----------A---TC-------------C-------------TG--CC-T-C----------------TATGTAATAAAGGTCACAGCAATAT-TAAACATGTGTTATTAATA-TG---TATCTGTACTTTTTAT-G-ATA-GGACAAACTGCTAG------TTCACT-----GATATTGTAATGTATAAATAA-GTCCATATAGTAACAAAAACTATCAATAGTGTATCT-------TCATA--GTATACTTTGATGGTATTATTCCATTT---TTAT--TG-TTTTGTT----TATTCAGTATATA
gi|134567 : CGATTCTAT-TTTTAAT-CGCTCT-GCAATTCTG---TAACA---------A---GA-------------CTCATTCCTGTAAACGCTACCT-C----------------TGTGTTATGTAAGTCACACTAATTT-TAACTATTTGTTGCTAATATATGCTTCTTCAT----TTTCT-A-AAAGCAACAAACGTAT-GGGATACTAC
gi|134568 : CGATTCTAT-TTTTAAC-CGCTCT-GCGATTCTG---TAA---------------CAAGAGTCATTCCTGT----------AAAAGCTAC-TTC----------------TGTGTTATGTAGGTCACAATAATTT-TAACTATTTGTTGCTAATA-TT---TGCTTCTACCTTTTAT-G-AAA-CAACACATTTAT-GAGATACTGCCGT-----CATAT
gi|134569 : CTATGTTT-AAC-CGCTCT-GCCATTCTGTAACAA-----------AACTCA-------------TTCCTGT----AAACGCTACCT-C----------------TGTGTTATGTAGGTCACAATAATTT-TAACTACTTGTTGCCAATA-TA---TGCTTCTACCTTTTCT-ATAAA-CAACAAA
gi|134570 : ATGTTATGTATGTAACAGCTTTTG-TAAATAAGTGTTATTACAA-CT---TGTTCGTACCGTTAAT-G-AAA-CGAAAAACTGCTCTGAAAACTGC--C-----ATTATGTTC---TATTGATAG-GTTC--ATGTTTACACGA--TAA--GTAGTA-ATAAAGTCTTGTCATATTACACT--TTAACGTT-TTATTCCATTT---AT----AG-TTTTGGTTTAATATTCAGTTTATAATAA
gi|134571 : aaacagaA-A----------T-ACA--C------TTGATGGT-TTATTCCATTT---ATATACAG-TTTTG
gi|134571 : AAGTGT-ATTAACA-AT---TGTTCATACCGTTTAT-G-AAA-CAACAAACTGATAGGGAAACTGCTTTTAATTAATATTT------ATTAATAGCGTCC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACAATTTTTGATCTAATGTaacaattgttcataccgtttatgaaacaacaaactgatagggaaactgcttttaattaatatttattaatagcgtccatagttacacaatatatagcaatcacaattgacggtttattccatttatatacaatttttgatctaatgt
gi|134572 : caaaactgtatataaatggaataaaccatcATATATATATACGTGTTGTTAATA-TT---TGCTCATATTTTTAAT-G-GAA-CAACAAATTTATGGGGAAACTACTGT-------TATCGTA---TATT
gi|134573 : -AAA-CAACAAACTGATAGGGAAACTGTTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACTCAA--TA---A-AGCA-A----------TCACA--A------CTGACGGT-TTATTCCATTT---ATATACAA-TTTTGATCTAATATTGAGTTTATAATAA
gi|134574 : TTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACTGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
gi|134575 : A-A----------T-ACA--C------TTGATGGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
blockSeqs : G G T T T TTA CAAGACTCATTCCTGT CT C T CTGTACACACTCCATT A G A G TA GCT G A T G A TAATT ATG T AT AC TCA T TAAAGTCTTG TT TATACT A ATA T
blockSeqs : . . T . . TAA CAAGAGTCATTCCTGT CT C . . A G . G A G G . . . A . . T . . T . TCT . CACT . . .
blockSeqs : . . T . . . TATTCATTCATATAT CT C . . A G . T A . G . . . A . . C . . T . . . . . . .
blockSeqs : . . . . . . AACTCATTCCTGT . . . . A A . G A . G . . . G . . T . . T . . . . . . .
blockSeqs : . . . . . . ACAC . . . . A G . G A . G . . . A . . T . . T . . . . . . .
blockSeqs : . . . . . . ACAC . . . . A G . G A . T . . . A . . T . . A . . . . . . .
blockSeqs : . . . . . . ACAC . . . . C T . G A . T . . . A . . C . . A . . . . . . .
blockSeqs : . . . . . . ACAC . . . . T T . T A . T . . . C . . T . . A . . . . . . .
blockSeqs : . . . . . . ACAC . . . . A T . C T . T . . . A . . T . . T . . . . . . .
blockSeqs : . . . . . ATAC . . . . T T . T A . G . . . G . . . . . T . . . . . . .
blockSeqs : . . . . . ACAC . . . . T T . T T . G . . . A . . . . . . . . . . . . .
blockSeqs : . . . . . ATCC . . . . T T . T T . T . . . . . . . . . . . . .
blockSeqs : . . . . . CAA . . . . T T . C T . . . . . . . . . . . . .
blockSeqs : . . . A C . . . . .
blockSeqs : . A A . . .
blockSeqs : C T .
blockSeqCons :
originalCons : TTGTTCTGCTATTCGATT-TTACCGACGCTAT-TTT-AAC-CGCTCT-GCGATTCTG---CAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTNATGTAGGNCACAGCAATAT-TAAATANGTGTTATCAATA-AT---TGTTCATACCGTTTAT-G-AAA-CAACAAACTGATAGGGAAACTGCTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
finalCons : TTGTTCTGCTATTCGATT-TTACCGACGCTAT-TTT-AAC-CGCTCT-GCGATTCTG---CAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTNATGTAGGNCACAGCAATAT-TAAATANGTGTTATCAATA-AT---TGTTCATACCGTTTAT-G-AAA-CAACAAACTGATAGGGAAACTGCTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
Alignments
lowQualScore : 111 44444444444444444444444444444444444444444 11 1111111111111111 1111111111 111111
lowQualScore : 4 2 8 2 2 000 11111111111111111111111111111111111111111 11 8 2 8888888888888888 1 1 0 2 1 22 666 3 2 2 2 1 77777 555 1 44 44 666 2 7777777777 33 444444 2 555 2
lowQualScore : . . . . . ... ......................................... .. . . ................ . . . . . .. ... . . . . . ..... ... . .. .. ... . .......... .. ...... . ... .
lowQualScore : 0 9 6 9 9 000 22222222222222222222222222222222222222222 88 6 9 9999999999999999 9 9 8 5 0 44 555 3 7 5 5 9 77777 444 7 66 66 222 9 5555555555 99 333333 9 000 9
consensus : TTGTTCTGCTATTCGATT-TTACCGACGCTAT-TTT-AAC-CGCTCT-GCGATTCTG---CAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTNATGTAGGNCACAGCAATAT-TAAATANGTGTTATCAATA-AT---TGTTCATACCGTTTAT-G-AAA-CAACAAACTGATAGGGAAACTGCTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
Reference ( family-803 ) : TTGTTCTGCTATTCGATT-TTACCGACGCTAT-TTT-AAC-CGCTCT-GCGATTCTG---CAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTNATGTAGGNCACAGCAATAT-TAAATANGTGTTATCAATA-AT---TGTTCATACCGTTTAT-G-AAA-CAACAAACTGATAGGGAAACTGCTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
gi|134556 : TTGTTCTGTTATTTGACT-TTACCGACGCTAT-TTT-AAT-CGCTCT-GTGATTTTA---CAA-----------A---CA-------------T----------AAATG--AC-T-C----------------TATGTAATGTGGAGCACAGCAATAT-TAAATAGGTGTTATCAATA-AT---TGTTCATACCGCTTAT-G-AAA-CAACAAACTGATAAGGAAACTGCTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCAATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
gi|134557 : TTGTTCTGCTATTCGATT-T-ACCGACGCTAT-TTT-AAC-CGTTCT-GCGATGGTG---CAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTAATGTAAAGCACAGCAATAT-ACAATAGGTGTTATCAATA-AT---TGTTCATACCGTTTAT-G-AAA-CAACAAACTGATAAGGAAACTGCTTT-----AATATTTTA---TACTAATAGTGTTC--ATAGCTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACAG-TTCTGATCTAATATTCAGTTTATAAAAA
gi|134558 : TTGTTCTGCTATTCGATT-TTACCGACGCTAT-TTT-AAC-CGTTCT-GCGATGCTA---CAA-----------A---CA-------------C----------AAATG--AT-T-C----------------AATG--ATTCA----ACAGCAATAT-ACAATAGGTGTTATCAACA-AT---TGTTCATTCC-TTTAT-G-TAA-CAACAAATTGATAAGGAAACTGCTTT-----AATATTGTA---TATTAATAGTATTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACGG-TTTTGATCTAATATTCAATTTATAGTAA
gi|134559 : TTGTTCTGCTATTCGATT-TTACCGACGCTAT-TTT-TAC-CGCTCT-GCGATTCTG---TAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTACTGTGGAGCACAGCAATAT-TAAATATGTGTTGTCAATA-AT---TGTTCATACTGTTTTT-G-AAA-CAACAAACTGATAGGGAAACTGTTTT-----AATATTTAA---TATTAATAGCGTTC--ATAGTTACACAA--TAT--AAAGCA-A----------TCACA--A------CTGACGGT-TTATTCCATTT---ATATACAA-TTTTGATCTAATATTCAGTTTATAATAA
gi|134560 : TTGTTCTGCTATTCGATT-TTAGCGACGCTAT-TTT-AAC-CGCTCT-GCGATTCTG---CAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTAATGTGGAGCACAGCAATAT-TAAATGGGTGTTATCAATA-AT---TGTTCATACCGTTTAT-G-AAA-CAACAAACTGATGGGAAAACTGCTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACCG-TTT
gi|134561 : TTGTTCTGCTATTCGATT-TTACCGACGCTTT-TTT-AAC-TGCTCT-GCGATTCTT---CAA-----------A---CA-------------C----------AAATG--AC-T-C----------------TATGTAATGTGGAACACAGCAACAT-TAAATAGGCGTTATCAATA-AT---GGTTCATACC
gi|134562 : TGCTATTCGATT-TTACAGGCGCTAT-TTC-AAT-CGCTCT-GCGATTCTG---CAA-----------A---TA-------------C----------AAATG--AC-T-T----------------TATGTAATGTGGAGCACAGCAATAT-TAGATAGGTGTTATCAATA-AT---TGTTCATATCGTTTAT-G-AAA-CAACAAACTTATAAGGAAACTGCTTT-----AATATTTTA---TATAAATAGTGTTC--ATAGTTACACAG--TAA--ACAGCA-A----------TCACA--A------TTAATGGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTAAGTTTATAGTAA
gi|134563 : TGCTATTCGATT-TTACAGGTGCTAT-TTC-AAT-CGCTCT-GCAATTCTG---CAA-----------A---CA-------------C----------AAATG--AC-T-T----------------TATGTAATTTGGAGCACAGCAATAT-TAGATAGGTGTTATCAATA-AT---TGTTCATATCGTTTAT-G-AAA-CAACAAACTTATAAGGAAACTGCTTA-----AATATGTTA---TATGAATAGTGTTC--ATAGTTTCACAG--TAA--ACAGCA-A----------TCACA--A------TTAATGGT-TTATTCCATTTATAATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
gi|134564 : TGCGATTGTATTGTTATCCACGCTAT-TTTTAAC-CCCTCTTGCTATTCTG---TAA---------------CA-------------A----------GATTC--AC-T-CCTGTACACACTCCATTTGTGTCATTTAGGTCACAGCAACTT-TAAATATGTGTTGTTTATA-TT---TTTTCATA
gi|134565 : T-TTAC-GATTTTAT-TTA-AAC-CGCTCT-GCGATTCTGTTACAATATTCATTCATA---TA-------------T----------ACACT--ACCT-C----------------TGTGTTATGTAGGTCACAACAATTT-TAACTACTTATTACTAA-A-ATG--TGCTTCTACCTTTTTTAA-AAA-CAACAAATTTAT
gi|134566 : ACC-ACGCTAT-TTT-AATTCGCTCT-GCAATTCTG---TAA-----------A---TC-------------C-------------TG--CC-T-C----------------TATGTAATAAAGGTCACAGCAATAT-TAAACATGTGTTATTAATA-TG---TATCTGTACTTTTTAT-G-ATA-GGACAAACTGCTAG------TTCACT-----GATATTGTAATGTATAAATAA-GTCCATATAGTAACAAAAACTATCAATAGTGTATCT-------TCATA--GTATACTTTGATGGTATTATTCCATTT---TTAT--TG-TTTTGTT----TATTCAGTATATA
gi|134567 : CGATTCTAT-TTTTAAT-CGCTCT-GCAATTCTG---TAACA---------A---GA-------------CTCATTCCTGTAAACGCTACCT-C----------------TGTGTTATGTAAGTCACACTAATTT-TAACTATTTGTTGCTAATATATGCTTCTTCAT----TTTCT-A-AAAGCAACAAACGTAT-GGGATACTAC
gi|134568 : CGATTCTAT-TTTTAAC-CGCTCT-GCGATTCTG---TAA---------------CAAGAGTCATTCCTGT----------AAAAGCTAC-TTC----------------TGTGTTATGTAGGTCACAATAATTT-TAACTATTTGTTGCTAATA-TT---TGCTTCTACCTTTTAT-G-AAA-CAACACATTTAT-GAGATACTGCCGT-----CATAT
gi|134569 : CTATGTTT-AAC-CGCTCT-GCCATTCTGTAACAA-----------AACTCA-------------TTCCTGT----AAACGCTACCT-C----------------TGTGTTATGTAGGTCACAATAATTT-TAACTACTTGTTGCCAATA-TA---TGCTTCTACCTTTTCT-ATAAA-CAACAAA
gi|134570 : ATGTTATGTATGTAACAGCTTTTG-TAAATAAGTGTTATTACAA-CT---TGTTCGTACCGTTAAT-G-AAA-CGAAAAACTGCTCTGAAAACTGC--C-----ATTATGTTC---TATTGATAG-GTTC--ATGTTTACACGA--TAA--GTAGTA-ATAAAGTCTTGTCATATTACACT--TTAACGTT-TTATTCCATTT---AT----AG-TTTTGGTTTAATATTCAGTTTATAATAA
gi|134571 : aaacagaA-A----------T-ACA--C------TTGATGGT-TTATTCCATTT---ATATACAG-TTTTG
gi|134571 : AAGTGT-ATTAACA-AT---TGTTCATACCGTTTAT-G-AAA-CAACAAACTGATAGGGAAACTGCTTTTAATTAATATTT------ATTAATAGCGTCC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACGGT-TTATTCCATTT---ATATACAATTTTTGATCTAATGTaacaattgttcataccgtttatgaaacaacaaactgatagggaaactgcttttaattaatatttattaatagcgtccatagttacacaatatatagcaatcacaattgacggtttattccatttatatacaatttttgatctaatgt
gi|134572 : caaaactgtatataaatggaataaaccatcATATATATATACGTGTTGTTAATA-TT---TGCTCATATTTTTAAT-G-GAA-CAACAAATTTATGGGGAAACTACTGT-------TATCGTA---TATT
gi|134573 : -AAA-CAACAAACTGATAGGGAAACTGTTTT-----AATATTTTA---TATTAATAGTGTTC--ATAGTTACTCAA--TA---A-AGCA-A----------TCACA--A------CTGACGGT-TTATTCCATTT---ATATACAA-TTTTGATCTAATATTGAGTTTATAATAA
gi|134574 : TTTA---TATTAATAGTGTTC--ATAGTTACACAA--TAT--ATAGCA-A----------TCACA--A------TTGACTGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA
gi|134575 : A-A----------T-ACA--C------TTGATGGT-TTATTCCATTT---ATATACAG-TTTTGATCTAATATTCAGTTTATAATAA