lowQualScore : 1111 1 22
lowQualScore : 2 1 7 22 55555 4 3333 33 4 2 0 2 00
lowQualScore : . . . .. ..... . .... .. . . . . ..
lowQualScore : 4 7 2 77 11111 4 1111 99 4 4 9 4 88
consensus : CAGGGTTTCCC-CCAGGAATTTTTGAAGGCATGT-TGCT----AA-AAATGGGANGGG-GTGGGTACGGGAGGGG-TAT-CCCCTCCTGTGTTGA-ATTTTTTT
Reference ( gi|158045 ) : CAGGGTTTCCC-CCAGGAATTTTTGAAGACATGT-TGCT----AA-AAATGCGAGGGG-GTGGGTACTGGAGGGG-TGT-CCCCTCCTGTGTTGAAATTTTTTT
gi|158041 : CAGGGTTTCTC-CCAGGAATTTTTGAAGGCATGT-TGCT----GA-AAATGGGA-GGG-GTGGGTACGGGAGAGG-TGT-CCCCTCCTGTGTTG--ATTTTTTT
gi|158043 : CAGGGTTCCCC-CCAGGAATTTTTGAAGGCATGT-TGCT----AA-AAATGGGA-GGG-GTGGGTATGGGAGGGG-TGT-ACCTTCCTGTGT--AGATTTTTTT
gi|158042 : CAGGGTTCCCC-CCAGGAATTTTTGAAGGCATGT-TGCT----AA-AAATGGGA-GGG-GTGGGTACGGGAGGGGTTAT-ACCCTCCTGTGTTG--ATTTTTTT
gi|158046 : CAGGGTGTCCC-CCAGGAATTTTTGAAGGCAAGT-TGCT----TA-AAATGGGA-GGG-GTGGGTATGGGAGGGG-TGT-CCTCTCCTGTGTTG--ATTTTTTT
gi|158044 : CAGGGTTCCTC-CCAGGATTTTTTGAAGGCATGT--GCT----AA-AATTGGGAGGGG--TGGGTATAGGAGGGG-TGT-CCCCTCCTGTGTT--AATTTTTTT
gi|158047 : CAAGGTTCCCC-CAAGGAATTTTTGAAGACATGT-TGCT----AA-AAATGGGAGG-----GGGTACGGGAGGGG-TTT-CCCACTGTGTGTTG--ATTTTTTT
gi|158049 : CAGGGTTTTCC-ACAGGAATTT-------CATGT-TGCA----AA-AAATGCGCTAGG-TTGGGTACAGGAGAGG-TAT-CCCCTCTTGTGTTGA
gi|158050 : CAGGGTTTTCC-C-AAGAATTTCTGAACGCATGT-TGCC----AA-AAATGCACTTGG-GTTGATACAGGAAAGG-TAT--CCCTATTGTGTTG-AATTTTTTT
gi|158048 : CAGGGTTTCCC-CCATGAATTTTTGAAGGCATGT-TGCA----AA-AAATGGGAGGGGTGTG
gi|158051 : CAGGGTTTCCC-CCAGACA---------GCATGT---AT----AAGAAATGAGATGGG--TGGGTATGGGATGGG-TAT-CCACTCCTGTGTTGAt
gi|158052 : CAGGATTTCCC-CT--GAAT------AG-CATGTATGTTTGTAAG-AAATGAGATGGG-GTGGGTACAGGATAGG-CAT-CCACTCTTGTGTTGA
gi|158055 : CAGGGTTCACCATCAA-AATTTCGGATGGCATGT-TGCA----AA-CAATGCGAGGTG-GTGGGTAC
gi|158054 : CAGTGTTTTCC-TCAGAAATGCATGAA---ATA----------AG-AAATGATATGGA-GTGGGTACAGGATGGG-TAT-CCCATCCTGTGTTAAa
gi|158053 : CAGGATTTCCT-CTAGGT-TTTTTGATAGTATGT-TACA----AG-ACATGAGATGAA-GTGGGTACAGGATCGG-TAT-TTACTCCTACGTTGA
gi|158056 : AGTGTTTCTC-TCAGAAAT--------ACATGT--ATT----AAGAAATGAGATGAG-GTGGGTACGGGATGGG-TAT-CCTATCCTGTGTTGA
gi|158057 : GGATTCCCC-ACAGAAATTTTTGAAGGCATGT-TGCT----AA----TGGGAGGGT--TGAGTACAGGAGGGG-TGT-CCCATCCTGTGTTG--ATTTTTTT
gi|158058 : CCC-CCAGGAATTTTTGAAGGCATGT-TGCT----AA-AAATG-----------------GGAGGGG-TGT-CCCCTCCTGTGTTG--ATTTTTTT
gi|158059 : AGGAATTTCTGAAGGTGTGT-TGCA----AA-AAATGCTAGGTA-GTAGGTATTGGAGGGG-CATCCCCCTCATATGTTG
gi|158060 : GGG-GTGGGTACGGGAGGGG-TAT-CCCCTCTTATGTTAAAATTTTTT
Alignments
lowQualScore : 1 11
lowQualScore : 2 1 0 6 2 5 2 2 33
lowQualScore : . . . . . . . . ..
lowQualScore : 2 1 1 3 1 3 2 2 44
consensus : CAGGGTTTCCC-CCAGGAATTTTTGAAGGCATGTTGCTAA-AAATGGGATGGGGTGGGTACGGGAGGGG-TAT-CCCCTCCTGTGTTG-AATTTTTTT
Reference ( family-801 ) : CAGGGTTTCCC-CCAGGAATTTTTGAAGGCATGTTGCTAA-AAATGGGANGGGGTGGGTACGGGAGGGG-TAT-CCCCTCCTGTGTTG-AATTTTTTT
gi|158041 : CAGGGTTTCTC-CCAGGAATTTTTGAAGGCATGTTGCTGA-AAATGGGA-GGGGTGGGTACGGGAGAGG-TGT-CCCCTCCTGTGTTG--ATTTTTTT
gi|158042 : CAGGGTTCCCC-CCAGGAATTTTTGAAGGCATGTTGCTAA-AAATGGGA-GGGGTGGGTACGGGAGGGGTTAT-ACCCTCCTGTGTTG--ATTTTTTT
gi|158043 : CAGGGTTCCCC-CCAGGAATTTTTGAAGGCATGTTGCTAA-AAATGGGA-GGGGTGGGTATGGGAGGGG-TGT-ACCTTCCTGTGTAG--ATTTTTTT
gi|158044 : CAGGGTTCCTC-CCAGGATTTTTTGAAGGCATGT-GCTAA-AATTGGGA-GGGGTGGGTATAGGAGGGG-TGT-CCCCTCCTGTGTT--AATTTTTTT
gi|158045 : CAGGGTTTCCC-CCAGGAATTTTTGAAGACATGTTGCTAA-AAATGCGAGGGGGTGGGTACTGGAGGGG-TGT-CCCCTCCTGTGTTGAAATTTTTTT
gi|158046 : CAGGGTGTCCC-CCAGGAATTTTTGAAGGCAAGTTGCTTA-AAATGGGA-GGGGTGGGTATGGGAGGGG-TGT-CCTCTCCTGTGTTG--ATTTTTTT
gi|158047 : CAAGGTTCCCC-CAAGGAATTTTTGAAGACATGTTGCTAA-AAATGGGAGG----GGGTACGGGAGGGG-TTT-CCCACTGTGTGTTG--ATTTTTTT
gi|158048 : CAGGGTTTCCC-CCATGAATTTTTGAAGGCATGTTGCAAA-AAATGGGA-GGGGTGTGT
gi|158049 : CAGGGTTTTCC-ACAGGAATTT-------CATGTTGCAAA-AAATGCGCTAGGTTGGGTACAGGAGAGG-TAT-CCCCTCTTGTGTTG-A
gi|158050 : CAGGGTTTTCC-C-AAGAATTTCTGAACGCATGTTGCCAA-AAATGCACTTGGGTTGATACAGGAAAGG-TAT--CCCTATTGTGTTG-AATTTTTTT
gi|158051 : CAGGGTTTCCC-CCAGACA---------GCATGT--ATAAGAAATGAGATGGG-TGGGTATGGGATGGG-TAT-CCACTCCTGTGTTG-A
gi|158052 : CAGGATTTCCC-CT--GAATA---GCATGTATGTTTGTAAGAAATGAGATGGGGTGGGTACAGGATAGG-CAT-CCACTCTTGTGTTG-A
gi|158053 : CAGGATTTCCT-CTAGGT-TTTTTGATAGTATGTTACAAG-ACATGAGATGAAGTGGGTACAGGATCGG-TAT-TTACTCCTACGTTG-A
gi|158054 : CAGTGTTTTCC-TCAGAAATGCATGAA---ATA-----AG-AAATGATATGGAGTGGGTACAGGATGGG-TAT-CCCATCCTGTGTTA-A
gi|158055 : CAGGGTTCACCATCAA-AATTTCGGATGGCATGTTGCAAA-CAATGCGAGGTGGTGGGTAC
gi|158056 : AGTGTTTCTC-TCAGAAAT--------ACATGT-ATTAAGAAATGAGATGAGGTGGGTACGGGATGGG-TAT-CCTATCCTGTGTTG-Aa
gi|158057 : GGATTCCCC-ACAGAAATTTTTGAAGGCATGTTGCTAA----TGGGA-GGGTTGAGTACAGGAGGGG-TGT-CCCATCCTGTGTTG--ATTTTTTT
gi|158058 : CCC-CCAGGAATTTTTGAAGGCATGTTGCTAA-AAAT----------------GGGAGGGG-TGT-CCCCTCCTGTGTTG--ATTTTTTT
gi|158059 : AGGAATTTCTGAAGGTGTGTTGCAAA-AAATGCTAGGTAGTAGGTATTGGAGGGG-CATCCCCCTCATATGTTG-
gi|158060 : GGTGGGGTGGGTACGGGAGGGG-TAT-CCCCTCTTATGTTA-AAATTTTTT
Alignments
lowQualScore : 1 11
lowQualScore : 2 1 0 6 2 5 2 2 33
lowQualScore : . . . . . . . . ..
lowQualScore : 2 1 1 3 1 4 2 2 44
consensus : CAGGGTTTCCC-CCAGGAATTTTTGAAGGCATGTTGCTAA-AAATGGGATGGGGTGGGTACGGGAGGGG-TAT-CCCCTCCTGTGTTG-AATTTTTTT
Reference ( family-801 ) : CAGGGTTTCCC-CCAGGAATTTTTGAAGGCATGTTGCTAA-AAATGGGATGGGGTGGGTACGGGAGGGG-TAT-CCCCTCCTGTGTTG-AATTTTTTT
gi|158041 : CAGGGTTTCTC-CCAGGAATTTTTGAAGGCATGTTGCTGA-AAATGGGA-GGGGTGGGTACGGGAGAGG-TGT-CCCCTCCTGTGTTG--ATTTTTTT
gi|158042 : CAGGGTTCCCC-CCAGGAATTTTTGAAGGCATGTTGCTAA-AAATGGGA-GGGGTGGGTACGGGAGGGGTTAT-ACCCTCCTGTGTTG--ATTTTTTT
gi|158043 : CAGGGTTCCCC-CCAGGAATTTTTGAAGGCATGTTGCTAA-AAATGGGA-GGGGTGGGTATGGGAGGGG-TGT-ACCTTCCTGTGTAG--ATTTTTTT
gi|158044 : CAGGGTTCCTC-CCAGGATTTTTTGAAGGCATGT-GCTAA-AATTGGGA-GGGGTGGGTATAGGAGGGG-TGT-CCCCTCCTGTGTT--AATTTTTTT
gi|158045 : CAGGGTTTCCC-CCAGGAATTTTTGAAGACATGTTGCTAA-AAATGCGAGGGGGTGGGTACTGGAGGGG-TGT-CCCCTCCTGTGTTGAAATTTTTTT
gi|158046 : CAGGGTGTCCC-CCAGGAATTTTTGAAGGCAAGTTGCTTA-AAATGGGA-GGGGTGGGTATGGGAGGGG-TGT-CCTCTCCTGTGTTG--ATTTTTTT
gi|158047 : CAAGGTTCCCC-CAAGGAATTTTTGAAGACATGTTGCTAA-AAATGGGA-GG---GGGTACGGGAGGGG-TTT-CCCACTGTGTGTTG--ATTTTTTT
gi|158048 : CAGGGTTTCCC-CCATGAATTTTTGAAGGCATGTTGCAAA-AAATGGGA-GGGGTGTGT
gi|158049 : CAGGGTTTTCC-ACAGGAATTT-------CATGTTGCAAA-AAATGCGCTAGGTTGGGTACAGGAGAGG-TAT-CCCCTCTTGTGTTG-A
gi|158050 : CAGGGTTTTCC-C-AAGAATTTCTGAACGCATGTTGCCAA-AAATGCACTTGGGTTGATACAGGAAAGG-TAT--CCCTATTGTGTTG-AATTTTTTT
gi|158051 : CAGGGTTTCCC-CCAGACA---------GCATGT--ATAAGAAATGAGATGGG-TGGGTATGGGATGGG-TAT-CCACTCCTGTGTTG-A
gi|158052 : CAGGATTTCCC-CT--GAATA---GCATGTATGTTTGTAAGAAATGAGATGGGGTGGGTACAGGATAGG-CAT-CCACTCTTGTGTTG-A
gi|158053 : CAGGATTTCCT-CTAGGT-TTTTTGATAGTATGTTACAAG-ACATGAGATGAAGTGGGTACAGGATCGG-TAT-TTACTCCTACGTTG-A
gi|158054 : CAGTGTTTTCC-TCAGAAATGCATGAA---ATA-----AG-AAATGATATGGAGTGGGTACAGGATGGG-TAT-CCCATCCTGTGTTA-A
gi|158055 : CAGGGTTCACCATCAA-AATTTCGGATGGCATGTTGCAAA-CAATGCGAGGTGGTGGGTAC
gi|158056 : AGTGTTTCTC-TCAGAAAT--------ACATGT-ATTAAGAAATGAGATGAGGTGGGTACGGGATGGG-TAT-CCTATCCTGTGTTG-Aa
gi|158057 : GGATTCCCC-ACAGAAATTTTTGAAGGCATGTTGCTAA----TGGGA-GGGTTGAGTACAGGAGGGG-TGT-CCCATCCTGTGTTG--ATTTTTTT
gi|158058 : CCC-CCAGGAATTTTTGAAGGCATGTTGCTAA-AAAT----------------GGGAGGGG-TGT-CCCCTCCTGTGTTG--ATTTTTTT
gi|158059 : AGGAATTTCTGAAGGTGTGTTGCAAA-AAATGCTAGGTAGTAGGTATTGGAGGGG-CATCCCCCTCATATGTTG-
gi|158060 : GGTGGGGTGGGTACGGGAGGGG-TAT-CCCCTCTTATGTTA-AAATTTTTT
blockSeqs : A T G G G T C AA
blockSeqs : . T G G T . . A
blockSeqs : . T G G T . . A
blockSeqs : . T . C T . . A
blockSeqs : . T . G T . . A
blockSeqs : . T . G T . . A
blockSeqs : . T . G T . . A
blockSeqs : . C . C G . . A
blockSeqs : . T . C T . . A
blockSeqs : . A . A G . . A
blockSeqs : . C . A T . . .
blockSeqs : . T . A . . . .
blockSeqs : . T . A . . . .
blockSeqs : . C . C . . . .
blockSeqs : . . . A . . . .
blockSeqs : . . . G . . . .
blockSeqs : . . . C . . .
blockSeqs : . . . .
blockSeqs : .
blockSeqCons : A*
originalCons : CAGGGTTTCCC-CCAGGAATTTTTGAAGGCATGTTGCTAA-AAATGGGATGGGGTGGGTACGGGAGGGG-TAT-CCCCTCCTGTGTTG-AATTTTTTT
finalCons : CAGGGTTTCCC-CCAGGAATTTTTGAAGGCATGTTGCTAA-AAATGGGATGGGGTGGGTACGGGAGGGG-TAT-CCCCTCCTGTGTTGA-ATTTTTTT
Alignments
lowQualScore : 1 11
lowQualScore : 2 1 0 6 2 5 2 2 33
lowQualScore : . . . . . . . . ..
lowQualScore : 2 1 1 3 1 4 2 2 44
consensus : CAGGGTTTCCC-CCAGGAATTTTTGAAGGCATGTTGCTAA-AAATGGGATGGGGTGGGTACGGGAGGGG-TAT-CCCCTCCTGTGTTG-AATTTTTTT
Reference ( family-801 ) : CAGGGTTTCCC-CCAGGAATTTTTGAAGGCATGTTGCTAA-AAATGGGATGGGGTGGGTACGGGAGGGG-TAT-CCCCTCCTGTGTTG-AATTTTTTT
gi|158041 : CAGGGTTTCTC-CCAGGAATTTTTGAAGGCATGTTGCTGA-AAATGGGA-GGGGTGGGTACGGGAGAGG-TGT-CCCCTCCTGTGTTG--ATTTTTTT
gi|158042 : CAGGGTTCCCC-CCAGGAATTTTTGAAGGCATGTTGCTAA-AAATGGGA-GGGGTGGGTACGGGAGGGGTTAT-ACCCTCCTGTGTTG--ATTTTTTT
gi|158043 : CAGGGTTCCCC-CCAGGAATTTTTGAAGGCATGTTGCTAA-AAATGGGA-GGGGTGGGTATGGGAGGGG-TGT-ACCTTCCTGTGTAG--ATTTTTTT
gi|158044 : CAGGGTTCCTC-CCAGGATTTTTTGAAGGCATGT-GCTAA-AATTGGGA-GGGGTGGGTATAGGAGGGG-TGT-CCCCTCCTGTGTT--AATTTTTTT
gi|158045 : CAGGGTTTCCC-CCAGGAATTTTTGAAGACATGTTGCTAA-AAATGCGAGGGGGTGGGTACTGGAGGGG-TGT-CCCCTCCTGTGTTGAAATTTTTTT
gi|158046 : CAGGGTGTCCC-CCAGGAATTTTTGAAGGCAAGTTGCTTA-AAATGGGA-GGGGTGGGTATGGGAGGGG-TGT-CCTCTCCTGTGTTG--ATTTTTTT
gi|158047 : CAAGGTTCCCC-CAAGGAATTTTTGAAGACATGTTGCTAA-AAATGGGA-GG---GGGTACGGGAGGGG-TTT-CCCACTGTGTGTTG--ATTTTTTT
gi|158048 : CAGGGTTTCCC-CCATGAATTTTTGAAGGCATGTTGCAAA-AAATGGGA-GGGGTGTGT
gi|158049 : CAGGGTTTTCC-ACAGGAATTT-------CATGTTGCAAA-AAATGCGCTAGGTTGGGTACAGGAGAGG-TAT-CCCCTCTTGTGTTG-A
gi|158050 : CAGGGTTTTCC-C-AAGAATTTCTGAACGCATGTTGCCAA-AAATGCACTTGGGTTGATACAGGAAAGG-TAT--CCCTATTGTGTTG-AATTTTTTT
gi|158051 : CAGGGTTTCCC-CCAGACA---------GCATGT--ATAAGAAATGAGATGGG-TGGGTATGGGATGGG-TAT-CCACTCCTGTGTTG-A
gi|158052 : CAGGATTTCCC-CT--GAATA---GCATGTATGTTTGTAAGAAATGAGATGGGGTGGGTACAGGATAGG-CAT-CCACTCTTGTGTTG-A
gi|158053 : CAGGATTTCCT-CTAGGT-TTTTTGATAGTATGTTACAAG-ACATGAGATGAAGTGGGTACAGGATCGG-TAT-TTACTCCTACGTTG-A
gi|158054 : CAGTGTTTTCC-TCAGAAATGCATGAA---ATA-----AG-AAATGATATGGAGTGGGTACAGGATGGG-TAT-CCCATCCTGTGTTA-A
gi|158055 : CAGGGTTCACCATCAA-AATTTCGGATGGCATGTTGCAAA-CAATGCGAGGTGGTGGGTAC
gi|158056 : AGTGTTTCTC-TCAGAAAT--------ACATGT-ATTAAGAAATGAGATGAGGTGGGTACGGGATGGG-TAT-CCTATCCTGTGTTG-Aa
gi|158057 : GGATTCCCC-ACAGAAATTTTTGAAGGCATGTTGCTAA----TGGGA-GGGTTGAGTACAGGAGGGG-TGT-CCCATCCTGTGTTG--ATTTTTTT
gi|158058 : CCC-CCAGGAATTTTTGAAGGCATGTTGCTAA-AAAT----------------GGGAGGGG-TGT-CCCCTCCTGTGTTG--ATTTTTTT
gi|158059 : AGGAATTTCTGAAGGTGTGTTGCAAA-AAATGCTAGGTAGTAGGTATTGGAGGGG-CATCCCCCTCATATGTTG-
gi|158060 : GGTGGGGTGGGTACGGGAGGGG-TAT-CCCCTCTTATGTTA-AAATTTTTT