lowQualScore : 1 22 1 1 1 1 11 11 1
lowQualScore : 33 7 444 33 5 0 33 33 88 2 33 444 5555 2 99999999 88 0 2 1 1 777777 2 2 5555 2 0 2 444 33 22 4 6 2 5555 0 2 44 2 2 6 3 6
lowQualScore : .. . ... .. . . .. .. .. . .. ... .... . ........ .. . . . . ...... . . .... . . . ... .. .. . . . .... . . .. . . . . .
lowQualScore : 44 2 444 44 7 8 44 44 22 4 22 111 0000 5 11111111 44 3 5 2 9 222222 1 2 3333 5 8 5 444 44 44 9 0 9 7777 3 7 77 7 7 8 1 0
consensus : AAATCTGCGAACATTATAGAGGAATTCC--GATTGNT---TATCAACA--AGAAGCGA--AG--ACACT-C--AC---GCTCAGTCCCATTCTGGCAGGTATTTCC----TGCATCAGAA-TTTAACAT--------TG--TTT-ACATATCTGT------ATGGTATCATAATGCT----TG-TTCAGGCTTCAATG-TTTATTTATGCGTG---G--AAAGTGTTTT-CGCAAGGCTG-CGCTAACCT----CTATCT-TGAACGCCCGGT-T-GTAACC-AATGAAAATCATACGGGCTGA-ATTTCT
Reference ( gi|118103 ) : AAATCTGCGAACATTATAGAGGAATTCC--GATTGCT---TATCAACA--AGAGGAGA--AG--AC--T-C--AC---GCTCAGTCCCATTCTGGCAGGTATTTCC----TGCATCAGAA-TTTAACAT--------TG--TAT-ACATTTCTGT------ATGGTATCAAAATGTT----TG-TTCAGGCTGCAATG-TTTATTTATGCATG---G--AAAGTGTTTA-CGCAAGACCG-CGCTAACCT----CTATCT-TGAACGCCCGGA-T-GTAACC-AATGAAATTCATACGGGCTGA-ATTTTT
gi|118105 : AAATCTGCAAATATTATAGTGGAATTCC--GATTGCT---TATAACCA--AGAGGAGA--AG--AC--T-C--GT---GCTCAGTCCCATTCTGGCAGGTATTTCC----TGCATCAGAA-TTTAACAT--------TG--TTT-ACATATCTG-------ACGGTATCAAAATGTT----TG-TTCAGGCTTCAATA-TTTATTTATGCATG---G--GAAGGGTTAA-CACAAGACTG-CGCTAACCT----CAATCT-TGAATGCCCCGA-T-TTAACC-AATAAAATTCATACAGGTTGA-ATTTC
gi|118102 : AAATCTGCGAATATTGCAGAGGAATTCC--GATTGCT---TATCAACA--AGAAGCAA--AG--ACACT-C--AC---GCTCAATCCCATTCTGGCAGGTATTTCC----TGCATCAGAA-TTTAACAT--------TGG-TAT-TCATATATGT------ATGGTATAATAATGTT----TG-TTCAG-TTACAATG-TTTATTTATGCATG---G--AAAGTGTTTA-CGCAAGGCTG-CGTTAACCT----CTATTT-TGAACCCCCGGT-T-GCAACC-AATGAAAATCATACGGGCTGA-AATTggcc
gi|118104 : AAATCTGCGAATATTATAGAGAAATTCC--GATTGCG---TATCAACA--AGAAGCGA--AG--AC--A-CCTAT---GCTCAATCCCATTCTGGCAGGTATTTCC----TGCATCAGAA-TTTAACAT--------TGA-TAT-TCATATATGT------ATGGTATAATAATGTT----TG-TTCTGGCTTCAATG-TGTATTTATGCATG---G--AAAGTGTTTA-CGCAAGGCTG-CGCTAACCT----CTATTT-TGAACACTCGGT-T-GT-ACC-AATAAAAATCATACGAGGTGA-ATTTCccggcc
gi|118106 : AAATCTGCGAACATTATAGAGGAATTCC--GACTGAT---TATCAACA--AGAGGAGA--AG--ACACT-C--AC---GCTCAGTCCCATTCTGGCAGGTATTTCC----TGCATCAG-A-TTTAACGT--------TG--TTTCATATCTGTGT------ATGGTGTCAAAACGCT----TG-TTCAGGCTTCAATA-TTTGTTTCTG------------AGTGTTTT-CACAAGGCTA-TGCTAACCT----CTTTCT-TGAAAGCCCGAT-T-GTAACC-AATGAAAATCATACGGGCTGA-ATTTggcc
gi|118107 : AAATCTGTGAACATTATAGAGGAACTCC--GATTGAT---TATCAACA--AGAAGCAA--AG--ACACT-C--AC---GCTCAGT-CAATTTTGGCAGGTACTTCC----TGCATCAGAATTTTAACAT--------TG--TTT-ACATATCTGT------ATGGTAACATAACGCT----TG-TTCAGGCTTCAATG-TGTATTTATGCGTA---G--AAAGTGTTTT-CGTAAGGCTG-CACTAACC-----GTATCT-TCAACGTCCAAT-T-GTAACC-GATGACAATCATACTGGCTGT-AT
gi|118108 : AAATCTGCCAACATTAAAGGGTAATTCCCAGATTGAT---TATCA-----------------------------C---GCTCAGTCCCATTCTGGCAGCTATTTCC----TGCATCAGAA-CTTAACAT--------TGGTTAT-GTATT--TAT------ATGATTTCGTAATGCT----TG-TTCAGGCTTCAATG-TTTATTTATGCGTG---G--AAAGTGTTTT-CGCAAGGCTG-CGCTAACAT----CTATCT-TGAACTCGCGAT-T-GTAACC-TATGAAAAGCATACGGGCTGA-ATTT
gi|118109 : AAATCTGCGAACATTATAGAGAAATT------------------AACA---GAAGCGA--AG--AC-------AC---GCTCAGTCCAATTCTGGCAGGTATTGCG----TACATCAGAA-TTAAACATACCGGTAGTT--TAC-ATATTTCTAT---------GTATCATAATGCT----TG-TTCAGGC---AACG-TTTATTTATGAATG---G--AAAGTGTTTTTCGCAAGGCTG-CGCAAACCT----CTATCT-TGAACG-CCAGA-TCATAACC-AATGAAAAGCATACGGGCTGA-ATTTccggtc
gi|118110 : AAGTCTGCGAACATAATAGAGGAATTCC--GATTGAT---TATCAACA--AGAAGCGAATAC--AC--T-C--AA---GCTCAGTCCCGTTCTGGCAGGTA-TTCC----TGTATC---G-TTT-GCA-------------TAT-A-ATTTATGT------ATGGTGTCATAATGCT----TG-TTCAGGCTTCAATGTTTTATTTATGCGAGGCCG--AAAGTGTTTA-CGTAAGGCTG-CGTTGACTT----CAATCT-TGAACACCCGAT-T-GTAACC-AAccggcc
gi|118111 : AAATCTGCAAACATTATAGAGGAATTCT--GATTGCT---TATCAACA--AAAATCGA--AGACAC--T-C--AC---GCTCTGTCCCATTCTAGCAAGTATTTTCCGTATGTATCAGAA-TTTAACAT--------TG--TTT-ACCTTTCTAT------ATGATATTCTAATGCT----TG-TTCAGGC-GC-ATG-TT-------------------AAGTGTTTT-CGTAATGCTGTTTTTAACC-------ATCT-TGAACGCCCGAG-T-GTAACC-ATTGAAAATCTTACTGGCTGA-AT
gi|118113 : AAATCTGCGAACATTATAGAGTAATTTC--GATTGAT---TATCAACA--AGAAGTGA--AG--ATA-TGC--GC---GCTTAGTCTTATTCTGGCAGTTATATCC----TGCATCCGAA-TTTAGCAT--------TT--T-T-ACATAGCTGT------ACGGTATCAAAATGCG----TG-TTCAGACTTCAGTG-TTTATTTAGGCATG---G--AAAgtccggcc
gi|118112 : AAATCTGCAAACGTTATAGAGGAATTCC--GACTGGTCAGTATCAACA--AGAAGCGA--AG--ACACT-C--TC---GCTCTGTCCAATTTTGGCAAGTATTTCC----TGAATCAGAA-TAAAACAC--------TG--TTT-ACATATCTGTACAAACATGGTGCCATAATGCT----TG-TTCAGGCTTCAACA-TTTATTGATACGTG---G---ATGTGTTT
gi|118114 : AAATCCGCGAACATTCTAGAGGAATTCC--GATTGGT---TATCAACA--AGAAATGA--AG--GCAAT-C--ACCTTGCTATACCCTATTCTGGAAGATATGTCC----TGCA
gi|118115 : AAATCTGGGAATATTATAGAGGAATCCC--TATTGGT---TATCAACAACAAATGAAC--AC--AC--T-C--GC---TCTCAGTCCCATTC
gi|118116 : AATCTGCGTACATTATAGAGGAATTTT--GATTGAT---TATCAACA--AGAAGCGA--AG--ACACT-C--AC---ATTCAGTCG------GGCAGGTATTTCA----TGCATCAGAA-TTAAACAT--------TG--TTT-ACATATATGT------TTGGCGTCATAATGCT----TG-TTCAGTCTTCAATA-TTTATTTATGCATG---G--AAAGTGTTTT-CGCGAAGCTG-TGCTAATCT----C-ATTTCTGAACGCCCGAT-T-GTAACCAAATAAAA-GCGTACGTGCTAATATTattttataaattatttatatagtttcactttgttttgaatatcattttggtattcatgatat
gi|118117 : TGCGAACACTATAGAGGAATTCC--GTTTTCA---TATCAACA--AAAAGCGA--AG--ACACT-C--AC---GCTCAGTCCCATTCTGGCAGGTATTTCC----TGCATTAAAA-GTTAACGT--------TG--TTT-ACATATCTTT------ATGGTATCATTATGTT----TG-TTCA-GCTTCAATG-TTTATTAACGAATG---A--AAAGTGTTTT-TGCAAGGCTG-CTCTAACCT----CTATCC-TGAACGTCCAGT-T-GCAACC-AATGAAAATTATAC
gi|118118 : --GATTGAT---TATCAATA--AGACGCGA--AG--ACGCT-C--AC---GCTCTGTCTCATTCTGGCCGGTATTTCC----TACATCAGAA-TTTAACAT--------TG--TTT-ATATATTTGT------ATGGTATCATAATGCT----TG-TTCAGGCTGCAGTT-TTTATTCATGCGTA---GAAAAAATGTTTT-CGGAAGGCTG-TGCTAACTT----CTATCT-TAAA--TCCAGATT-GTAACC-AATGGCAATCATACGGGCTGA-ATTT
gi|118119 : --T-C--AT---GCTCTGTCCCATTCTGGCAGGTATTTCC----TGCATCAGAA-TTTAACAT--------TG--TTT-ACATATCTGT------ATGATGTCATAATGCTTCAATGCTTCAGGCTACAACA-TTTATTTATGCATG---G--AATGTGTTTT-GGCAAGGCTG-CGCTAAATT----CTATCT-TGAATGCCCAAT-T-GTACCC-AATGAAAATCAAAATGGCTGA-AATTCccggcc
gi|118120 : AGTTATTTCC----TACGTCAGAA-TTTAACAT--------TG--TTT-ACAT-------------------CATAATGCT----T-----------CAGTT-TTTATTGATATGTG---G--ACAATGTTTT-CGCAAGGCTG-CGTTAACCT----GCATCT-TGGACGCC--GACT-GTAACC-AACGCAAACCATACGGGCTGA-ATTTggcc
gi|118121 : TAGCCTTTTCCTATTA-TGAACGACCGAT-C-GTAACC-AACGAAAAGAATACGGGCTGA-ATTTccggcc
Alignments
lowQualScore : 33 1 444 333 4444 4444 2 2 55555 2 4 2 33 666666 2 5555 2 2 2 1 444 33 2 2 5555 2 1 2
lowQualScore : .. . ... ... .... .... . . ..... . . . .. ...... . .... . . . . ... .. . . .... . . .
lowQualScore : 22 8 111 999 7777 5555 2 2 66666 2 4 2 11 444444 2 0000 4 4 4 4 111 22 7 7 3333 5 0 9
consensus : AAATCTGCGAACATTATAGAGGAATTCC--GATTGNT---TATCAACAAGAAGCGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGGTA-TCATAATGCTT----G-TTCAGGCTT-CAATG-TTTATTTATGCGTG---G--AAAGTGTTTT-CGCAAGGCTG-CGCTAACCT----CTATCT-TGAACGCCCGATTGTAACCAATGAAAATCATACGGGCTGA-ATTTCT
Reference ( family-793 ) : AAATCTGCGAACATTATAGAGGAATTCC--GATTGNT---TATCAACAAGAAGCGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGGTA-TCATAATGCTT----G-TTCAGGCTT-CAATG-TTTATTTATGCGTG---G--AAAGTGTTTT-CGCAAGGCTG-CGCTAACCT----CTATCT-TGAACGCCCGGTTGTAACCAATGAAAATCATACGGGCTGA-ATTTCT
gi|118102 : AAATCTGCGAATATTGCAGAGGAATTCC--GATTGCT---TATCAACAAGAAGCAAAGACACTCAC---GCTCAATCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-GTATTCATATA--TGT------ATGGTA-TAATAATGTTT----G-TTCAG--TTACAATG-TTTATTTATGCATG---G--AAAGTGTTTA-CGCAAGGCTG-CGTTAACCT----CTATTT-TGAACCCCCGGTTGCAACCAATGAAAATCATACGGGCTGA-AATTC
gi|118103 : AAATCTGCGAACATTATAGAGGAATTCC--GATTGCT---TATCAACAAGAGGAGAAGAC--TCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TA-TACATTTC--TGT------ATGGTA-TCAAAATGTTT----G-TTCAGGCTG-CAATG-TTTATTTATGCATG---G--AAAGTGTTTA-CGCAAGACCG-CGCTAACCT----CTATCT-TGAACGCCCGGATGTAACCAATGAAATTCATACGGGCTGA-ATTTTTcggcc
gi|118104 : AAATCTGCGAATATTATAGAGAAATTCC--GATTGCG---TATCAACAAGAAGCGAAGACACCTAT---GCTCAATCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-GATA-TTCATATA--TGT------ATGGTA-TAATAATGTTT----G-TTCTGGCTT-CAATG-TGTATTTATGCATG---G--AAAGTGTTTA-CGCAAGGCTG-CGCTAACCT----CTATTT-TGAACACTCGGTTGT-ACCAATAAAAATCATACGAGGTGA-ATTTCT
gi|118105 : AAATCTGCAAATATTATAGTGGAATTCC--GATTGCT---TATAACCAAGAGGAGAAGAC--TCGT---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TG-------ACGGTA-TCAAAATGTTT----G-TTCAGGCTT-CAATA-TTTATTTATGCATG---G--GAAGGGTTAA-CACAAGACTG-CGCTAACCT----CAATCT-TGAATGCCCCGATTTAACCAATAAAATTCATACAGGTTGA-ATTTCTggcc
gi|118106 : AAATCTGCGAACATTATAGAGGAATTCC--GACTGAT---TATCAACAAGAGGAGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAG-A-TTTA-ACGT-----T-G-TT-T-CATATCTGTGT------ATGGTG-TCAAAACGCTT----G-TTCAGGCTT-CAATA-TTTGTTTCTG------------AGTGTTTT-CACAAGGCTA-TGCTAACCT----CTTTCT-TGAAAGCCCGATTGTAACCAATGAAAATCATACGGGCTGA-ATTTggcc
gi|118107 : AAATCTGTGAACATTATAGAGGAACTCC--GATTGAT---TATCAACAAGAAGCAAAGACACTCAC---GCTCAGT-CAATTT----TGGCAGGTACTTCC----TGCATCAGAATTTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGGTA-ACATAACGCTT----G-TTCAGGCTT-CAATG-TGTATTTATGCGTA---G--AAAGTGTTTT-CGTAAGGCTG-CACTAACC-----GTATCT-TCAACGTCCAATTGTAACCGATGACAATCATACTGGCTGT-AT
gi|118108 : AAATCTGCCAACATTAAAGGGTAATTCCCAGATTGAT---TATCA--------------------C---GCTCAGTCCCATTC----TGGCAGCTATTTCC----TGCATCAGAA-CTTA-ACAT-----T-G-GT-TATGTATT--TAT------ATGATT-TCGTAATGCTT----G-TTCAGGCTT-CAATG-TTTATTTATGCGTG---G--AAAGTGTTTT-CGCAAGGCTG-CGCTAACAT----CTATCT-TGAACTCGCGATTGTAACCTATGAAAAGCATACGGGCTGA-ATTTC
gi|118109 : AAATCTGCGAACATTATAGAGAAATT------------------AACA-GAAGCGAAGACAC-------GCTCAGTCCAATTC----TGGCAGGTATTGCG----TACATCAGAA-TTAA-ACATACCGGTAG-TT-TACATATT--TCT------ATG-TA-TCATAATGCTT----G-TTCAGGC----AACG-TTTATTTATGAATG---G--AAAGTGTTTTTCGCAAGGCTG-CGCAAACCT----CTATCT-TGAACGCCAGATCATAACCAATGAAAAGCATACGGGCTGA-ATTTCcggtc
gi|118110 : AAGTCTGCGAACATAATAGAGGAATTCC--GATTGAT---TATCAACAAGAAGCGAATACACTCAA---GCTCAGTCCCGTTC----TGGCAGGTA-TTCC----TGTATC---G-TTTGCATAT-----A-A-TT-TA--------TGT------ATGGTG-TCATAATGCTT----G-TTCAGGCTT-CAATGTTTTATTTATGCGAGGCCG--AAAGTGTTTA-CGTAAGGCTG-CGTTGACTT----CAATCT-TGAACACCCGATTGTAACCAAcggcc
gi|118111 : AAATCTGCAAACATTATAGAGGAATTCT--GATTGCT---TATCAACAAAAATCGAAGACACTCAC---GCTCTGTCCCATTC----TAGCAAGTATTTTCCGTATGTATCAGAA-TTTA-ACAT-----T-G-TT-TACCTTTC--TAT------ATGATA-TTCTAATGCTT----G-TTCAGGCGC---ATG-TT-------------------AAGTGTTTT-CGTAATGCTGTTTTTAACC-------ATCT-TGAACGCCCGAGTGTAACCATTGAAAATCTTACTGGCTGA-ATGTC
gi|118112 : AAATCTGCAAACGTTATAGAGGAATTCC--GACTGGTCAGTATCAACAAGAAGCGAAGACACTCTC---GCTCTGTCCAATTT----TGGCAAGTATTTCC----TGAATCAGAA-TAAA-ACAC-----T-G-TT-TACATATC--TGTACAAACATGGTG-CCATAATGCTT----G-TTCAGGCTT-CAACA-TTTATTGATACGTG---G---ATGTGTTTcggcc
gi|118113 : AAATCTGCGAACATTATAGAGTAATTTC--GATTGAT---TATCAACAAGAAGTGAAGATATGCGC---GCTTAGTCTTATTC----TGGCAGTTATATCC----TGCATCCGAA-TTTA-GCAT-----T---TT-TACATAGC--TGT------ACGGTA-TCAAAATGCGT----G-TTCAGACTT-CAGTG-TTTATTTAGGCATG---G--AAA
gi|118114 : AAATCCGCGAACATTCTAGAGGAATTCC--GATTGGT---TATCAACAAGAAATGAAGGCAATCACCTTGCTATACCCTATTC----TGGAAGATATGTCC----TGCA
gi|118115 : AAATCTGGGAATATTATAGAGGAATCCC--TATTGGT---TATCAACAACAAATGAACACACTCGC---TCTCAGTCCCATTCATTTTATAAATTATTT---------AT-ATAG-TTTC-ACTT-----T-GTTT-TGAATATC--ATT------TTGGTATTCATGAT
gi|118116 : AATCTGCGTACATTATAGAGGAATTTT--GATTGAT---TATCAACAAGAAGCGAAGACACTCAC---ATTCAGTCG----------GGCAGGTATTTCA----TGCATCAGAA-TTAA-ACAT-----T-G-TT-TACATATA--TGT------TTGGCG-TCATAATGCTT----G-TTCAGTCTT-CAATA-TTTATTTATGCATG---G--AAAGTGTTTT-CGCGAAGCTG-TGCTAATCT----C-ATTTCTGAACGCCCGATTGTAACCAAATAAAAGCGTACGTGCTAATATTat
gi|118117 : TGCGAACACTATAGAGGAATTCC--GTTTTCA---TATCAACAAAAAGCGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATTAAAA-GTTA-ACGT-----T-G-TT-TACATATC--TTT------ATGGTA-TCATTATGTTT----G-TTCA-GCTT-CAATG-TTTATTAACGAATG---A--AAAGTGTTTT-TGCAAGGCTG-CTCTAACCT----CTATCC-TGAACGTCCAGTTGCAACCAATGAAAATTATAC
gi|118118 : --GATTGAT---TATCAATAAGACGCGAAGACGCTCAC---GCTCTGTCTCATTC----TGGCCGGTATTTCC----TACATCAGAA-TTTA-ACAT-----T-G-TT-TATATATT--TGT------ATGGTA-TCATAATGCTT----G-TTCAGGCTG-CAGTT-TTTATTCATGCGTA---GAAAAAATGTTTT-CGGAAGGCTG-TGCTAACTT----CTATCT-TAAAT-CCAGATTGTAACCAATGGCAATCATACGGGCTGA-ATTTC
gi|118119 : TCAT---GCTCTGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGATG-TCATAATGCTTCAATGCTTCAGGCTA-CAACA-TTTATTTATGCATG---G--AATGTGTTTT-GGCAAGGCTG-CGCTAAATT----CTATCT-TGAATGCCCAATTGTACCCAATGAAAATCAAAATGGCTGA-AATTCTcggcc
gi|118120 : AGTTATTTCC----TACGTCAGAA-TTTA-ACAT-----T-G-TT-TACAT----------------------CATAATGCTT----------------CAGTT-TTTATTGATATGTG---G--ACAATGTTTT-CGCAAGGCTG-CGTTAACCT----GCATCT-TGGACG-CCGACTGTAACCAACGCAAACCATACGGGCTGA-ATTTCggcc
gi|118121 : TAGCCTTTTCCTATTA-TGAACGACCGATCGTAACCAACGAAAAGAATACGGGCTGA-ATTTCcggcc
Alignments
lowQualScore : 33 1 444 333 4444 4444 2 2 55555 2 4 2 33 666666 2 5555 2 2 2 1 444 33 2 2 5555 2 2 2
lowQualScore : .. . ... ... .... .... . . ..... . . . .. ...... . .... . . . . ... .. . . .... . . .
lowQualScore : 22 8 111 999 7777 5555 2 2 66666 2 4 2 11 444444 2 0000 4 4 4 4 111 22 7 7 3333 5 5 9
consensus : AAATCTGCGAACATTATAGAGGAATTCC--GATTGNT---TATCAACAAGAAGCGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGGTA-TCATAATGCTT----G-TTCAGGCTT-CAATG-TTTATTTATGCGTG---G--AAAGTGTTTT-CGCAAGGCTG-CGCTAACCT----CTATCT-TGAACG-CCCGATTGTAACCAATGAAAATCATACGGGCTGA-ATTTCT
Reference ( family-793 ) : AAATCTGCGAACATTATAGAGGAATTCC--GATTGNT---TATCAACAAGAAGCGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGGTA-TCATAATGCTT----G-TTCAGGCTT-CAATG-TTTATTTATGCGTG---G--AAAGTGTTTT-CGCAAGGCTG-CGCTAACCT----CTATCT-TGAACG-CCCGATTGTAACCAATGAAAATCATACGGGCTGA-ATTTCT
gi|118102 : AAATCTGCGAATATTGCAGAGGAATTCC--GATTGCT---TATCAACAAGAAGCAAAGACACTCAC---GCTCAATCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-GTATTCATATA--TGT------ATGGTA-TAATAATGTTT----G-TTCAG--TTACAATG-TTTATTTATGCATG---G--AAAGTGTTTA-CGCAAGGCTG-CGTTAACCT----CTATTT-TGAACC-CCCGGTTGCAACCAATGAAAATCATACGGGCTGA-AATTC
gi|118103 : AAATCTGCGAACATTATAGAGGAATTCC--GATTGCT---TATCAACAAGAGGAGAAGAC--TCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TA-TACATTTC--TGT------ATGGTA-TCAAAATGTTT----G-TTCAGGCTG-CAATG-TTTATTTATGCATG---G--AAAGTGTTTA-CGCAAGACCG-CGCTAACCT----CTATCT-TGAACG-CCCGGATGTAACCAATGAAATTCATACGGGCTGA-ATTTTTcggcc
gi|118104 : AAATCTGCGAATATTATAGAGAAATTCC--GATTGCG---TATCAACAAGAAGCGAAGACACCTAT---GCTCAATCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-GATA-TTCATATA--TGT------ATGGTA-TAATAATGTTT----G-TTCTGGCTT-CAATG-TGTATTTATGCATG---G--AAAGTGTTTA-CGCAAGGCTG-CGCTAACCT----CTATTT-TGAACA-CTCGGTTGT-ACCAATAAAAATCATACGAGGTGA-ATTTCT
gi|118105 : AAATCTGCAAATATTATAGTGGAATTCC--GATTGCT---TATAACCAAGAGGAGAAGAC--TCGT---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TG-------ACGGTA-TCAAAATGTTT----G-TTCAGGCTT-CAATA-TTTATTTATGCATG---G--GAAGGGTTAA-CACAAGACTG-CGCTAACCT----CAATCT-TGAATGCCCCGATT-TAACCAATAAAATTCATACAGGTTGA-ATTTCTggcc
gi|118106 : AAATCTGCGAACATTATAGAGGAATTCC--GACTGAT---TATCAACAAGAGGAGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAG-A-TTTA-ACGT-----T-G-TT-T-CATATCTGTGT------ATGGTG-TCAAAACGCTT----G-TTCAGGCTT-CAATA-TTTGTTTCTG------------AGTGTTTT-CACAAGGCTA-TGCTAACCT----CTTTCT-TGAAAG-CCCGATTGTAACCAATGAAAATCATACGGGCTGA-ATTTggcc
gi|118107 : AAATCTGTGAACATTATAGAGGAACTCC--GATTGAT---TATCAACAAGAAGCAAAGACACTCAC---GCTCAGT-CAATTT----TGGCAGGTACTTCC----TGCATCAGAATTTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGGTA-ACATAACGCTT----G-TTCAGGCTT-CAATG-TGTATTTATGCGTA---G--AAAGTGTTTT-CGTAAGGCTG-CACTAACC-----GTATCT-TCAACG-TCCAATTGTAACCGATGACAATCATACTGGCTGT-AT
gi|118108 : AAATCTGCCAACATTAAAGGGTAATTCCCAGATTGAT---TATCA--------------------C---GCTCAGTCCCATTC----TGGCAGCTATTTCC----TGCATCAGAA-CTTA-ACAT-----T-G-GT-TATGTATT--TAT------ATGATT-TCGTAATGCTT----G-TTCAGGCTT-CAATG-TTTATTTATGCGTG---G--AAAGTGTTTT-CGCAAGGCTG-CGCTAACAT----CTATCT-TGAACT-CGCGATTGTAACCTATGAAAAGCATACGGGCTGA-ATTTC
gi|118109 : AAATCTGCGAACATTATAGAGAAATT------------------AACA-GAAGCGAAGACAC-------GCTCAGTCCAATTC----TGGCAGGTATTGCG----TACATCAGAA-TTAA-ACATACCGGTAG-TT-TACATATT--TCT------ATG-TA-TCATAATGCTT----G-TTCAGGC----AACG-TTTATTTATGAATG---G--AAAGTGTTTTTCGCAAGGCTG-CGCAAACCT----CTATCT-TGAACG-CCAGATCATAACCAATGAAAAGCATACGGGCTGA-ATTTCcggtc
gi|118110 : AAGTCTGCGAACATAATAGAGGAATTCC--GATTGAT---TATCAACAAGAAGCGAATACACTCAA---GCTCAGTCCCGTTC----TGGCAGGTA-TTCC----TGTATC---G-TTTGCATAT-----A-A-TT-TA--------TGT------ATGGTG-TCATAATGCTT----G-TTCAGGCTT-CAATGTTTTATTTATGCGAGGCCG--AAAGTGTTTA-CGTAAGGCTG-CGTTGACTT----CAATCT-TGAACA-CCCGATTGTAACCAAcggcc
gi|118111 : AAATCTGCAAACATTATAGAGGAATTCT--GATTGCT---TATCAACAAAAATCGAAGACACTCAC---GCTCTGTCCCATTC----TAGCAAGTATTTTCCGTATGTATCAGAA-TTTA-ACAT-----T-G-TT-TACCTTTC--TAT------ATGATA-TTCTAATGCTT----G-TTCAGGCGC---ATG-TT-------------------AAGTGTTTT-CGTAATGCTGTTTTTAACC-------ATCT-TGAACG-CCCGAGTGTAACCATTGAAAATCTTACTGGCTGA-ATGTC
gi|118112 : AAATCTGCAAACGTTATAGAGGAATTCC--GACTGGTCAGTATCAACAAGAAGCGAAGACACTCTC---GCTCTGTCCAATTT----TGGCAAGTATTTCC----TGAATCAGAA-TAAA-ACAC-----T-G-TT-TACATATC--TGTACAAACATGGTG-CCATAATGCTT----G-TTCAGGCTT-CAACA-TTTATTGATACGTG---G---ATGTGTTTcggcc
gi|118113 : AAATCTGCGAACATTATAGAGTAATTTC--GATTGAT---TATCAACAAGAAGTGAAGATATGCGC---GCTTAGTCTTATTC----TGGCAGTTATATCC----TGCATCCGAA-TTTA-GCAT-----T---TT-TACATAGC--TGT------ACGGTA-TCAAAATGCGT----G-TTCAGACTT-CAGTG-TTTATTTAGGCATG---G--AAA
gi|118114 : AAATCCGCGAACATTCTAGAGGAATTCC--GATTGGT---TATCAACAAGAAATGAAGGCAATCACCTTGCTATACCCTATTC----TGGAAGATATGTCC----TGCA
gi|118115 : AAATCTGGGAATATTATAGAGGAATCCC--TATTGGT---TATCAACAACAAATGAACACACTCGC---TCTCAGTCCCATTCATTTTATAAATTATTT---------AT-ATAG-TTTC-ACTT-----T-GTTT-TGAATATC--ATT------TTGGTATTCATGAT
gi|118116 : AATCTGCGTACATTATAGAGGAATTTT--GATTGAT---TATCAACAAGAAGCGAAGACACTCAC---ATTCAGTCG----------GGCAGGTATTTCA----TGCATCAGAA-TTAA-ACAT-----T-G-TT-TACATATA--TGT------TTGGCG-TCATAATGCTT----G-TTCAGTCTT-CAATA-TTTATTTATGCATG---G--AAAGTGTTTT-CGCGAAGCTG-TGCTAATCT----C-ATTTCTGAACG-CCCGATTGTAACCAAATAAAAGCGTACGTGCTAATATTat
gi|118117 : TGCGAACACTATAGAGGAATTCC--GTTTTCA---TATCAACAAAAAGCGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATTAAAA-GTTA-ACGT-----T-G-TT-TACATATC--TTT------ATGGTA-TCATTATGTTT----G-TTCA-GCTT-CAATG-TTTATTAACGAATG---A--AAAGTGTTTT-TGCAAGGCTG-CTCTAACCT----CTATCC-TGAACG-TCCAGTTGCAACCAATGAAAATTATAC
gi|118118 : --GATTGAT---TATCAATAAGACGCGAAGACGCTCAC---GCTCTGTCTCATTC----TGGCCGGTATTTCC----TACATCAGAA-TTTA-ACAT-----T-G-TT-TATATATT--TGT------ATGGTA-TCATAATGCTT----G-TTCAGGCTG-CAGTT-TTTATTCATGCGTA---GAAAAAATGTTTT-CGGAAGGCTG-TGCTAACTT----CTATCT-TAAAT--CCAGATTGTAACCAATGGCAATCATACGGGCTGA-ATTTC
gi|118119 : TCAT---GCTCTGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGATG-TCATAATGCTTCAATGCTTCAGGCTA-CAACA-TTTATTTATGCATG---G--AATGTGTTTT-GGCAAGGCTG-CGCTAAATT----CTATCT-TGAATG-CCCAATTGTACCCAATGAAAATCAAAATGGCTGA-AATTCTcggcc
gi|118120 : AGTTATTTCC----TACGTCAGAA-TTTA-ACAT-----T-G-TT-TACAT----------------------CATAATGCTT----------------CAGTT-TTTATTGATATGTG---G--ACAATGTTTT-CGCAAGGCTG-CGTTAACCT----GCATCT-TGGACG--CCGACTGTAACCAACGCAAACCATACGGGCTGA-ATTTCggcc
gi|118121 : TAGCCTTTTCCTATTA-TGAACG-ACCGATCGTAACCAACGAAAAGAATACGGGCTGA-ATTTCcggcc
Alignments
lowQualScore : 33 1 444 333 4444 4444 2 2 55555 2 4 2 33 666666 2 5555 2 2 2 1 444 33 2 2 5555 2 2 2
lowQualScore : .. . ... ... .... .... . . ..... . . . .. ...... . .... . . . . ... .. . . .... . . .
lowQualScore : 22 8 111 999 7777 5555 2 2 66666 2 4 2 11 444444 2 0000 4 4 4 4 111 22 7 7 3333 5 5 9
consensus : AAATCTGCGAACATTATAGAGGAATTCC--GATTGNT---TATCAACAAGAAGCGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGGTA-TCATAATGCTT----G-TTCAGGCTT-CAATG-TTTATTTATGCGTG---G--AAAGTGTTTT-CGCAAGGCTG-CGCTAACCT----CTATCT-TGAACG-CCCGATTGTAACCAATGAAAATCATACGGGCTGA-ATTTCT
Reference ( family-793 ) : AAATCTGCGAACATTATAGAGGAATTCC--GATTGNT---TATCAACAAGAAGCGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGGTA-TCATAATGCTT----G-TTCAGGCTT-CAATG-TTTATTTATGCGTG---G--AAAGTGTTTT-CGCAAGGCTG-CGCTAACCT----CTATCT-TGAACG-CCCGATTGTAACCAATGAAAATCATACGGGCTGA-ATTTCT
gi|118102 : AAATCTGCGAATATTGCAGAGGAATTCC--GATTGCT---TATCAACAAGAAGCAAAGACACTCAC---GCTCAATCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-GTATTCATATA--TGT------ATGGTA-TAATAATGTTT----G-TTCAG--TTACAATG-TTTATTTATGCATG---G--AAAGTGTTTA-CGCAAGGCTG-CGTTAACCT----CTATTT-TGAACC-CCCGGTTGCAACCAATGAAAATCATACGGGCTGA-AATTC
gi|118103 : AAATCTGCGAACATTATAGAGGAATTCC--GATTGCT---TATCAACAAGAGGAGAAGAC--TCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TA-TACATTTC--TGT------ATGGTA-TCAAAATGTTT----G-TTCAGGCTG-CAATG-TTTATTTATGCATG---G--AAAGTGTTTA-CGCAAGACCG-CGCTAACCT----CTATCT-TGAACG-CCCGGATGTAACCAATGAAATTCATACGGGCTGA-ATTTTTcggcc
gi|118104 : AAATCTGCGAATATTATAGAGAAATTCC--GATTGCG---TATCAACAAGAAGCGAAGACACCTAT---GCTCAATCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-GATA-TTCATATA--TGT------ATGGTA-TAATAATGTTT----G-TTCTGGCTT-CAATG-TGTATTTATGCATG---G--AAAGTGTTTA-CGCAAGGCTG-CGCTAACCT----CTATTT-TGAACA-CTCGGTTGT-ACCAATAAAAATCATACGAGGTGA-ATTTCT
gi|118105 : AAATCTGCAAATATTATAGTGGAATTCC--GATTGCT---TATAACCAAGAGGAGAAGAC--TCGT---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TG-------ACGGTA-TCAAAATGTTT----G-TTCAGGCTT-CAATA-TTTATTTATGCATG---G--GAAGGGTTAA-CACAAGACTG-CGCTAACCT----CAATCT-TGAATGCCCCGATT-TAACCAATAAAATTCATACAGGTTGA-ATTTCTggcc
gi|118106 : AAATCTGCGAACATTATAGAGGAATTCC--GACTGAT---TATCAACAAGAGGAGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAG-A-TTTA-ACGT-----T-G-TT-T-CATATCTGTGT------ATGGTG-TCAAAACGCTT----G-TTCAGGCTT-CAATA-TTTGTTTCTG------------AGTGTTTT-CACAAGGCTA-TGCTAACCT----CTTTCT-TGAAAG-CCCGATTGTAACCAATGAAAATCATACGGGCTGA-ATTTggcc
gi|118107 : AAATCTGTGAACATTATAGAGGAACTCC--GATTGAT---TATCAACAAGAAGCAAAGACACTCAC---GCTCAGT-CAATTT----TGGCAGGTACTTCC----TGCATCAGAATTTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGGTA-ACATAACGCTT----G-TTCAGGCTT-CAATG-TGTATTTATGCGTA---G--AAAGTGTTTT-CGTAAGGCTG-CACTAACC-----GTATCT-TCAACG-TCCAATTGTAACCGATGACAATCATACTGGCTGT-AT
gi|118108 : AAATCTGCCAACATTAAAGGGTAATTCCCAGATTGAT---TATCA--------------------C---GCTCAGTCCCATTC----TGGCAGCTATTTCC----TGCATCAGAA-CTTA-ACAT-----T-G-GT-TATGTATT--TAT------ATGATT-TCGTAATGCTT----G-TTCAGGCTT-CAATG-TTTATTTATGCGTG---G--AAAGTGTTTT-CGCAAGGCTG-CGCTAACAT----CTATCT-TGAACT-CGCGATTGTAACCTATGAAAAGCATACGGGCTGA-ATTTC
gi|118109 : AAATCTGCGAACATTATAGAGAAATT------------------AACA-GAAGCGAAGACAC-------GCTCAGTCCAATTC----TGGCAGGTATTGCG----TACATCAGAA-TTAA-ACATACCGGTAG-TT-TACATATT--TCT------ATG-TA-TCATAATGCTT----G-TTCAGGC----AACG-TTTATTTATGAATG---G--AAAGTGTTTTTCGCAAGGCTG-CGCAAACCT----CTATCT-TGAACG-CCAGATCATAACCAATGAAAAGCATACGGGCTGA-ATTTCcggtc
gi|118110 : AAGTCTGCGAACATAATAGAGGAATTCC--GATTGAT---TATCAACAAGAAGCGAATACACTCAA---GCTCAGTCCCGTTC----TGGCAGGTA-TTCC----TGTATC---G-TTTGCATAT-----A-A-TT-TA--------TGT------ATGGTG-TCATAATGCTT----G-TTCAGGCTT-CAATGTTTTATTTATGCGAGGCCG--AAAGTGTTTA-CGTAAGGCTG-CGTTGACTT----CAATCT-TGAACA-CCCGATTGTAACCAAcggcc
gi|118111 : AAATCTGCAAACATTATAGAGGAATTCT--GATTGCT---TATCAACAAAAATCGAAGACACTCAC---GCTCTGTCCCATTC----TAGCAAGTATTTTCCGTATGTATCAGAA-TTTA-ACAT-----T-G-TT-TACCTTTC--TAT------ATGATA-TTCTAATGCTT----G-TTCAGGCGC---ATG-TT-------------------AAGTGTTTT-CGTAATGCTGTTTTTAACC-------ATCT-TGAACG-CCCGAGTGTAACCATTGAAAATCTTACTGGCTGA-ATGTC
gi|118112 : AAATCTGCAAACGTTATAGAGGAATTCC--GACTGGTCAGTATCAACAAGAAGCGAAGACACTCTC---GCTCTGTCCAATTT----TGGCAAGTATTTCC----TGAATCAGAA-TAAA-ACAC-----T-G-TT-TACATATC--TGTACAAACATGGTG-CCATAATGCTT----G-TTCAGGCTT-CAACA-TTTATTGATACGTG---G---ATGTGTTTcggcc
gi|118113 : AAATCTGCGAACATTATAGAGTAATTTC--GATTGAT---TATCAACAAGAAGTGAAGATATGCGC---GCTTAGTCTTATTC----TGGCAGTTATATCC----TGCATCCGAA-TTTA-GCAT-----T---TT-TACATAGC--TGT------ACGGTA-TCAAAATGCGT----G-TTCAGACTT-CAGTG-TTTATTTAGGCATG---G--AAA
gi|118114 : AAATCCGCGAACATTCTAGAGGAATTCC--GATTGGT---TATCAACAAGAAATGAAGGCAATCACCTTGCTATACCCTATTC----TGGAAGATATGTCC----TGCA
gi|118115 : AAATCTGGGAATATTATAGAGGAATCCC--TATTGGT---TATCAACAACAAATGAACACACTCGC---TCTCAGTCCCATTCATTTTATAAATTATTT---------AT-ATAG-TTTC-ACTT-----T-GTTT-TGAATATC--ATT------TTGGTATTCATGAT
gi|118116 : AATCTGCGTACATTATAGAGGAATTTT--GATTGAT---TATCAACAAGAAGCGAAGACACTCAC---ATTCAGTCG----------GGCAGGTATTTCA----TGCATCAGAA-TTAA-ACAT-----T-G-TT-TACATATA--TGT------TTGGCG-TCATAATGCTT----G-TTCAGTCTT-CAATA-TTTATTTATGCATG---G--AAAGTGTTTT-CGCGAAGCTG-TGCTAATCT----C-ATTTCTGAACG-CCCGATTGTAACCAAATAAAAGCGTACGTGCTAATATTat
gi|118117 : TGCGAACACTATAGAGGAATTCC--GTTTTCA---TATCAACAAAAAGCGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATTAAAA-GTTA-ACGT-----T-G-TT-TACATATC--TTT------ATGGTA-TCATTATGTTT----G-TTCA-GCTT-CAATG-TTTATTAACGAATG---A--AAAGTGTTTT-TGCAAGGCTG-CTCTAACCT----CTATCC-TGAACG-TCCAGTTGCAACCAATGAAAATTATAC
gi|118118 : --GATTGAT---TATCAATAAGACGCGAAGACGCTCAC---GCTCTGTCTCATTC----TGGCCGGTATTTCC----TACATCAGAA-TTTA-ACAT-----T-G-TT-TATATATT--TGT------ATGGTA-TCATAATGCTT----G-TTCAGGCTG-CAGTT-TTTATTCATGCGTA---GAAAAAATGTTTT-CGGAAGGCTG-TGCTAACTT----CTATCT-TAAAT--CCAGATTGTAACCAATGGCAATCATACGGGCTGA-ATTTC
gi|118119 : TCAT---GCTCTGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGATG-TCATAATGCTTCAATGCTTCAGGCTA-CAACA-TTTATTTATGCATG---G--AATGTGTTTT-GGCAAGGCTG-CGCTAAATT----CTATCT-TGAATG-CCCAATTGTACCCAATGAAAATCAAAATGGCTGA-AATTCTcggcc
gi|118120 : AGTTATTTCC----TACGTCAGAA-TTTA-ACAT-----T-G-TT-TACAT----------------------CATAATGCTT----------------CAGTT-TTTATTGATATGTG---G--ACAATGTTTT-CGCAAGGCTG-CGTTAACCT----GCATCT-TGGACG--CCGACTGTAACCAACGCAAACCATACGGGCTGA-ATTTCggcc
gi|118121 : TAGCCTTTTCCTATTA-TGAACG-ACCGATCGTAACCAACGAAAAGAATACGGGCTGA-ATTTCcggcc
blockSeqs : CA C CAG CTT ATTT CGTA T C ACCGG A A . TG ACAAAC T CAAT C . T A GCC AA T T TTTC C C T
blockSeqs : . C . . . . . . . . T . . . . . . . . A . . . . . . . .
blockSeqs : . C . . . . . . . . . . . . . . . . . A . . . . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . . . G . . . . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . . . G . . . . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . . . A . . . . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . . . G . . . . . . . .
blockSeqs : . C . . . . . . . . . . . . . . . . . G . . . . . . . .
blockSeqs : . G . . . . . . . . . . . . . . . . . A . . . . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . . . A . . . . . . . .
blockSeqs : . G . . . . . . . . . . . . . . . . . A . . . . . . . .
blockSeqs : . G . . . . . . . . . . . . . . . . . G . . . . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . . . A . . . . . . . .
blockSeqs : . C . . . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : .
blockSeqCons :
originalCons : AAATCTGCGAACATTATAGAGGAATTCC--GATTGNT---TATCAACAAGAAGCGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGGTA-TCATAATGCTT----G-TTCAGGCTT-CAATG-TTTATTTATGCGTG---G--AAAGTGTTTT-CGCAAGGCTG-CGCTAACCT----CTATCT-TGAACG-CCCGATTGTAACCAATGAAAATCATACGGGCTGA-ATTTCT
finalCons : AAATCTGCGAACATTATAGAGGAATTCC--GATTGNT---TATCAACAAGAAGCGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGGTA-TCATAATGCTT----G-TTCAGGCTT-CAATG-TTTATTTATGCGTG---G--AAAGTGTTTT-CGCAAGGCTG-CGCTAACCT----CTATCT-TGAACG-CCCGATTGTAACCAATGAAAATCATACGGGCTGA-ATTTCT
Alignments
lowQualScore : 33 1 444 333 4444 4444 2 2 55555 2 4 2 33 666666 2 5555 2 2 2 1 444 33 2 2 5555 2 2 2
lowQualScore : .. . ... ... .... .... . . ..... . . . .. ...... . .... . . . . ... .. . . .... . . .
lowQualScore : 22 8 111 999 7777 5555 2 2 66666 2 4 2 11 444444 2 0000 4 4 4 4 111 22 7 7 3333 5 5 9
consensus : AAATCTGCGAACATTATAGAGGAATTCC--GATTGNT---TATCAACAAGAAGCGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGGTA-TCATAATGCTT----G-TTCAGGCTT-CAATG-TTTATTTATGCGTG---G--AAAGTGTTTT-CGCAAGGCTG-CGCTAACCT----CTATCT-TGAACG-CCCGATTGTAACCAATGAAAATCATACGGGCTGA-ATTTCT
Reference ( family-793 ) : AAATCTGCGAACATTATAGAGGAATTCC--GATTGNT---TATCAACAAGAAGCGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGGTA-TCATAATGCTT----G-TTCAGGCTT-CAATG-TTTATTTATGCGTG---G--AAAGTGTTTT-CGCAAGGCTG-CGCTAACCT----CTATCT-TGAACG-CCCGATTGTAACCAATGAAAATCATACGGGCTGA-ATTTCT
gi|118102 : AAATCTGCGAATATTGCAGAGGAATTCC--GATTGCT---TATCAACAAGAAGCAAAGACACTCAC---GCTCAATCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-GTATTCATATA--TGT------ATGGTA-TAATAATGTTT----G-TTCAG--TTACAATG-TTTATTTATGCATG---G--AAAGTGTTTA-CGCAAGGCTG-CGTTAACCT----CTATTT-TGAACC-CCCGGTTGCAACCAATGAAAATCATACGGGCTGA-AATTC
gi|118103 : AAATCTGCGAACATTATAGAGGAATTCC--GATTGCT---TATCAACAAGAGGAGAAGAC--TCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TA-TACATTTC--TGT------ATGGTA-TCAAAATGTTT----G-TTCAGGCTG-CAATG-TTTATTTATGCATG---G--AAAGTGTTTA-CGCAAGACCG-CGCTAACCT----CTATCT-TGAACG-CCCGGATGTAACCAATGAAATTCATACGGGCTGA-ATTTTTcggcc
gi|118104 : AAATCTGCGAATATTATAGAGAAATTCC--GATTGCG---TATCAACAAGAAGCGAAGACACCTAT---GCTCAATCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-GATA-TTCATATA--TGT------ATGGTA-TAATAATGTTT----G-TTCTGGCTT-CAATG-TGTATTTATGCATG---G--AAAGTGTTTA-CGCAAGGCTG-CGCTAACCT----CTATTT-TGAACA-CTCGGTTGT-ACCAATAAAAATCATACGAGGTGA-ATTTCT
gi|118105 : AAATCTGCAAATATTATAGTGGAATTCC--GATTGCT---TATAACCAAGAGGAGAAGAC--TCGT---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TG-------ACGGTA-TCAAAATGTTT----G-TTCAGGCTT-CAATA-TTTATTTATGCATG---G--GAAGGGTTAA-CACAAGACTG-CGCTAACCT----CAATCT-TGAATGCCCCGATT-TAACCAATAAAATTCATACAGGTTGA-ATTTCTggcc
gi|118106 : AAATCTGCGAACATTATAGAGGAATTCC--GACTGAT---TATCAACAAGAGGAGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATCAG-A-TTTA-ACGT-----T-G-TT-T-CATATCTGTGT------ATGGTG-TCAAAACGCTT----G-TTCAGGCTT-CAATA-TTTGTTTCTG------------AGTGTTTT-CACAAGGCTA-TGCTAACCT----CTTTCT-TGAAAG-CCCGATTGTAACCAATGAAAATCATACGGGCTGA-ATTTggcc
gi|118107 : AAATCTGTGAACATTATAGAGGAACTCC--GATTGAT---TATCAACAAGAAGCAAAGACACTCAC---GCTCAGT-CAATTT----TGGCAGGTACTTCC----TGCATCAGAATTTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGGTA-ACATAACGCTT----G-TTCAGGCTT-CAATG-TGTATTTATGCGTA---G--AAAGTGTTTT-CGTAAGGCTG-CACTAACC-----GTATCT-TCAACG-TCCAATTGTAACCGATGACAATCATACTGGCTGT-AT
gi|118108 : AAATCTGCCAACATTAAAGGGTAATTCCCAGATTGAT---TATCA--------------------C---GCTCAGTCCCATTC----TGGCAGCTATTTCC----TGCATCAGAA-CTTA-ACAT-----T-G-GT-TATGTATT--TAT------ATGATT-TCGTAATGCTT----G-TTCAGGCTT-CAATG-TTTATTTATGCGTG---G--AAAGTGTTTT-CGCAAGGCTG-CGCTAACAT----CTATCT-TGAACT-CGCGATTGTAACCTATGAAAAGCATACGGGCTGA-ATTTC
gi|118109 : AAATCTGCGAACATTATAGAGAAATT------------------AACA-GAAGCGAAGACAC-------GCTCAGTCCAATTC----TGGCAGGTATTGCG----TACATCAGAA-TTAA-ACATACCGGTAG-TT-TACATATT--TCT------ATG-TA-TCATAATGCTT----G-TTCAGGC----AACG-TTTATTTATGAATG---G--AAAGTGTTTTTCGCAAGGCTG-CGCAAACCT----CTATCT-TGAACG-CCAGATCATAACCAATGAAAAGCATACGGGCTGA-ATTTCcggtc
gi|118110 : AAGTCTGCGAACATAATAGAGGAATTCC--GATTGAT---TATCAACAAGAAGCGAATACACTCAA---GCTCAGTCCCGTTC----TGGCAGGTA-TTCC----TGTATC---G-TTTGCATAT-----A-A-TT-TA--------TGT------ATGGTG-TCATAATGCTT----G-TTCAGGCTT-CAATGTTTTATTTATGCGAGGCCG--AAAGTGTTTA-CGTAAGGCTG-CGTTGACTT----CAATCT-TGAACA-CCCGATTGTAACCAAcggcc
gi|118111 : AAATCTGCAAACATTATAGAGGAATTCT--GATTGCT---TATCAACAAAAATCGAAGACACTCAC---GCTCTGTCCCATTC----TAGCAAGTATTTTCCGTATGTATCAGAA-TTTA-ACAT-----T-G-TT-TACCTTTC--TAT------ATGATA-TTCTAATGCTT----G-TTCAGGCGC---ATG-TT-------------------AAGTGTTTT-CGTAATGCTGTTTTTAACC-------ATCT-TGAACG-CCCGAGTGTAACCATTGAAAATCTTACTGGCTGA-ATGTC
gi|118112 : AAATCTGCAAACGTTATAGAGGAATTCC--GACTGGTCAGTATCAACAAGAAGCGAAGACACTCTC---GCTCTGTCCAATTT----TGGCAAGTATTTCC----TGAATCAGAA-TAAA-ACAC-----T-G-TT-TACATATC--TGTACAAACATGGTG-CCATAATGCTT----G-TTCAGGCTT-CAACA-TTTATTGATACGTG---G---ATGTGTTTcggcc
gi|118113 : AAATCTGCGAACATTATAGAGTAATTTC--GATTGAT---TATCAACAAGAAGTGAAGATATGCGC---GCTTAGTCTTATTC----TGGCAGTTATATCC----TGCATCCGAA-TTTA-GCAT-----T---TT-TACATAGC--TGT------ACGGTA-TCAAAATGCGT----G-TTCAGACTT-CAGTG-TTTATTTAGGCATG---G--AAA
gi|118114 : AAATCCGCGAACATTCTAGAGGAATTCC--GATTGGT---TATCAACAAGAAATGAAGGCAATCACCTTGCTATACCCTATTC----TGGAAGATATGTCC----TGCA
gi|118115 : AAATCTGGGAATATTATAGAGGAATCCC--TATTGGT---TATCAACAACAAATGAACACACTCGC---TCTCAGTCCCATTCATTTTATAAATTATTT---------AT-ATAG-TTTC-ACTT-----T-GTTT-TGAATATC--ATT------TTGGTATTCATGAT
gi|118116 : AATCTGCGTACATTATAGAGGAATTTT--GATTGAT---TATCAACAAGAAGCGAAGACACTCAC---ATTCAGTCG----------GGCAGGTATTTCA----TGCATCAGAA-TTAA-ACAT-----T-G-TT-TACATATA--TGT------TTGGCG-TCATAATGCTT----G-TTCAGTCTT-CAATA-TTTATTTATGCATG---G--AAAGTGTTTT-CGCGAAGCTG-TGCTAATCT----C-ATTTCTGAACG-CCCGATTGTAACCAAATAAAAGCGTACGTGCTAATATTat
gi|118117 : TGCGAACACTATAGAGGAATTCC--GTTTTCA---TATCAACAAAAAGCGAAGACACTCAC---GCTCAGTCCCATTC----TGGCAGGTATTTCC----TGCATTAAAA-GTTA-ACGT-----T-G-TT-TACATATC--TTT------ATGGTA-TCATTATGTTT----G-TTCA-GCTT-CAATG-TTTATTAACGAATG---A--AAAGTGTTTT-TGCAAGGCTG-CTCTAACCT----CTATCC-TGAACG-TCCAGTTGCAACCAATGAAAATTATAC
gi|118118 : --GATTGAT---TATCAATAAGACGCGAAGACGCTCAC---GCTCTGTCTCATTC----TGGCCGGTATTTCC----TACATCAGAA-TTTA-ACAT-----T-G-TT-TATATATT--TGT------ATGGTA-TCATAATGCTT----G-TTCAGGCTG-CAGTT-TTTATTCATGCGTA---GAAAAAATGTTTT-CGGAAGGCTG-TGCTAACTT----CTATCT-TAAAT--CCAGATTGTAACCAATGGCAATCATACGGGCTGA-ATTTC
gi|118119 : TCAT---GCTCTGTCCCATTC----TGGCAGGTATTTCC----TGCATCAGAA-TTTA-ACAT-----T-G-TT-TACATATC--TGT------ATGATG-TCATAATGCTTCAATGCTTCAGGCTA-CAACA-TTTATTTATGCATG---G--AATGTGTTTT-GGCAAGGCTG-CGCTAAATT----CTATCT-TGAATG-CCCAATTGTACCCAATGAAAATCAAAATGGCTGA-AATTCTcggcc
gi|118120 : AGTTATTTCC----TACGTCAGAA-TTTA-ACAT-----T-G-TT-TACAT----------------------CATAATGCTT----------------CAGTT-TTTATTGATATGTG---G--ACAATGTTTT-CGCAAGGCTG-CGTTAACCT----GCATCT-TGGACG--CCGACTGTAACCAACGCAAACCATACGGGCTGA-ATTTCggcc
gi|118121 : TAGCCTTTTCCTATTA-TGAACG-ACCGATCGTAACCAACGAAAAGAATACGGGCTGA-ATTTCcggcc