lowQualScore : 1
lowQualScore : 2 55555 0 2 4 4444 2 4
lowQualScore : . ..... . . . .... . .
lowQualScore : 1 00000 2 5 9 2222 0 2
consensus : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-CCCCTTGCGCGACCGACCCACGAAAAAAGCACCGACTGAAAAA
Reference ( gi|35912 ) : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-CCACTTGCGCGACCGACCCACGAAAAAAGCACCGACTGAAAAA
gi|35913 : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-ACCCTTGCGCGACCGACCCACGAAAAAAGCACCGACTGGAAAA
gi|35914 : AGGCC-AA-----AATAAAAATAGTGTT----TGTTT-CCCCTTGCGCGACCGACCCACAGAAAAAGCACCGACTGAAAAA
gi|35915 : AGGCC-TA-----AATAAAA-TAGTGTT----TGTTT-CCCCTTGTGCGACCAACCCACGAAAAAAGCACCGACTGAAAAA
gi|35917 : AGGCC-AA-----AATTAAAATATTGTT----TGTTT-CCGCTTGCGCGACCGACCCACGAAAAAAGCACCGACTGAAA
gi|35916 : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-CCCCTTGCGCGACTGACCATCGAAAAAAGCACTGGCTGAAAAA
gi|35918 : AGGCC-TA-----AATAAAAAAAGTGTT----TGTTT-CCTCTTGCGCGACCAACATACGAAAAAAACACCGACTGAAAAA
gi|35920 : AGGGC-CA-----AATAAAAATAGTGTT----TGTTT-CCTATTGTGCGACCGACCCATGAAAAATGCACCGACTGAAAA
gi|35921 : AGGCC-TACCGTAAATAAAAATAGTGCT----TGTTT-CCTCTTGCGTGACCGACCCAAGGAAAAAGCACTGACTGAAAAA
gi|35919 : AGGCC-TT-----AATGAAAATAGTGTTAAAGTCTTT-CCCCTTGTGCGACCAACCCACGAAAAAAGCACCGACTGAAAAA
gi|35922 : AGGCC-CA-----AATTAGAATATTGTT----TGTTT-CCCCTTGTGCGACCCACCTACG-AAAAAGTACCGACTAAAAAA
gi|35923 : AGGCT-TA-----AATAAAAA-AATGTT----TGTTT-CCTCTTGTGCAACCAACCCACGAACAAAAAA--GACTGAAAAA
gi|35924 : AGGCC-TA-----AATCAAACAATTTTT----TATCT-CCCCTTG-GTGACTGACCAATGAAATAAGCACTGACTTAAAAA
gi|35926 : AGGCC-TA-----AAAAAAAAGA-TGTT----TGTTT-CCGTTTACCCGACCGACCC
gi|35927 : AGGCC-TA-----AAAAAAAAAGATGTT----TGTTT-CCGGTTACCCGACCGACCC
gi|35925 : AGGCC-TA-----AATAAAAAAAGTGTT----TGTTT-CCCCTTGC
gi|35928 : GGCC-TG-----AATTAAAATATTGTT----TGTTT-CCCCTTGCTTGACCGACCAACGAAAAAAGCACCGACTGAAAA
gi|35929 : GGCA-TA-----AATTAAAAAATTGTT----TGTTT-CCCCTTGCACAACTGAGCCACCAAAAAAGCACTGACTGAAAAA
gi|35930 : GGCCACA-----ATTGAAAGTA-TCTC----TGTTT-CCCCTTGCGTGACTGACCCACGAAAATAGCATCAACTGAAAAA
gi|35931 : GGCC-TA-----AATTAAAAAAATGTT----TGTTTGCCTCTT-C-CGACCGACCCA
gi|35932 : A-----ATTAAAAATATT-TC----TGTTT-ACCCTTGCGTGACCGGTCCACGAAAAAGGCACCGACTGAAAAA
Alignments
lowQualScore : 2 44444 1 4 4444 1
lowQualScore : . ..... . . .... .
lowQualScore : 0 88888 9 2 0000 9
consensus : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-CCCCTTGCGCGACCGACCCACGAAAAAAGCACCGACTGAAAAA
Reference ( family-780 ) : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-CCCCTTGCGCGACCGACCCACGAAAAAAGCACCGACTGAAAAA
gi|35912 : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-CCACTTGCGCGACCGACCCACGAAAAAAGCACCGACTGAAAAA
gi|35913 : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-ACCCTTGCGCGACCGACCCACGAAAAAAGCACCGACTGGAAAA
gi|35914 : AGGCC-AA-----AATAAAAATAGTGTT----TGTTT-CCCCTTGCGCGACCGACCCACAGAAAAAGCACCGACTGAAAAA
gi|35915 : AGGCC-TA-----AATAAAA-TAGTGTT----TGTTT-CCCCTTGTGCGACCAACCCACGAAAAAAGCACCGACTGAAAAA
gi|35916 : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-CCCCTTGCGCGACTGACCATCGAAAAAAGCACTGGCTGAAAAA
gi|35917 : AGGCC-AA-----AATTAAAATATTGTT----TGTTT-CCGCTTGCGCGACCGACCCACGAAAAAAGCACCGACTGAAA
gi|35918 : AGGCC-TA-----AATAAAAAAAGTGTT----TGTTT-CCTCTTGCGCGACCAACATACGAAAAAAACACCGACTGAAAAA
gi|35919 : AGGCC-TT-----AATGAAAATAGTGTTAAAGTCTTT-CCCCTTGTGCGACCAACCCACGAAAAAAGCACCGACTGAAAAA
gi|35920 : AGGGC-CA-----AATAAAAATAGTGTT----TGTTT-CCTATTGTGCGACCGACCCATGAAAAATGCACCGACTGAAAA
gi|35921 : AGGCC-TACCGTAAATAAAAATAGTGCT----TGTTT-CCTCTTGCGTGACCGACCCAAGGAAAAAGCACTGACTGAAAAA
gi|35922 : AGGCC-CA-----AATTAGAATATTGTT----TGTTT-CCCCTTGTGCGACCCACCTACG-AAAAAGTACCGACTAAAAAA
gi|35923 : AGGCT-TA-----AATAAAAA-AATGTT----TGTTT-CCTCTTGTGCAACCAACCCACGAACAAAAAA--GACTGAAAAA
gi|35924 : AGGCC-TA-----AATCAAACAATTTTT----TATCT-CCCCTTG-GTGACTGACCAATGAAATAAGCACTGACTTAAAAA
gi|35925 : AGGCC-TA-----AATAAAAAAAGTGTT----TGTTT-CCCCTTGC
gi|35926 : AGGCC-TA-----AAAAAAAAGA-TGTT----TGTTT-CCGTTTACCCGACCGACCC
gi|35927 : AGGCC-TA-----AAAAAAAAAGATGTT----TGTTT-CCGGTTACCCGACCGACCC
gi|35928 : GGCC-TG-----AATTAAAATATTGTT----TGTTT-CCCCTTGCTTGACCGACCAACGAAAAAAGCACCGACTGAAAA
gi|35929 : GGCA-TA-----AATTAAAAAATTGTT----TGTTT-CCCCTTGCACAACTGAGCCACCAAAAAAGCACTGACTGAAAAA
gi|35930 : GGCCACA-----ATTGAAAGTA-TCTC----TGTTT-CCCCTTGCGTGACTGACCCACGAAAATAGCATCAACTGAAAAA
gi|35931 : GGCC-TA-----AATTAAAAAAATGTT----TGTTTGCCTCTT-C-CGACCGACCCA
gi|35932 : A-----ATTAAAAATATT-TC----TGTTT-ACCCTTGCGTGACCGGTCCACGAAAAAGGCACCGACTGAAAAA
Alignments
lowQualScore : 2 44444 1 4 4444 1
lowQualScore : . ..... . . .... .
lowQualScore : 0 88888 9 2 0000 9
consensus : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-CCCCTTGCGCGACCGACCCACGAAAAAAGCACCGACTGAAAAA
Reference ( family-780 ) : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-CCCCTTGCGCGACCGACCCACGAAAAAAGCACCGACTGAAAAA
gi|35912 : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-CCACTTGCGCGACCGACCCACGAAAAAAGCACCGACTGAAAAA
gi|35913 : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-ACCCTTGCGCGACCGACCCACGAAAAAAGCACCGACTGGAAAA
gi|35914 : AGGCC-AA-----AATAAAAATAGTGTT----TGTTT-CCCCTTGCGCGACCGACCCACAGAAAAAGCACCGACTGAAAAA
gi|35915 : AGGCC-TA-----AATAAAA-TAGTGTT----TGTTT-CCCCTTGTGCGACCAACCCACGAAAAAAGCACCGACTGAAAAA
gi|35916 : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-CCCCTTGCGCGACTGACCATCGAAAAAAGCACTGGCTGAAAAA
gi|35917 : AGGCC-AA-----AATTAAAATATTGTT----TGTTT-CCGCTTGCGCGACCGACCCACGAAAAAAGCACCGACTGAAA
gi|35918 : AGGCC-TA-----AATAAAAAAAGTGTT----TGTTT-CCTCTTGCGCGACCAACATACGAAAAAAACACCGACTGAAAAA
gi|35919 : AGGCC-TT-----AATGAAAATAGTGTTAAAGTCTTT-CCCCTTGTGCGACCAACCCACGAAAAAAGCACCGACTGAAAAA
gi|35920 : AGGGC-CA-----AATAAAAATAGTGTT----TGTTT-CCTATTGTGCGACCGACCCATGAAAAATGCACCGACTGAAAA
gi|35921 : AGGCC-TACCGTAAATAAAAATAGTGCT----TGTTT-CCTCTTGCGTGACCGACCCAAGGAAAAAGCACTGACTGAAAAA
gi|35922 : AGGCC-CA-----AATTAGAATATTGTT----TGTTT-CCCCTTGTGCGACCCACCTACG-AAAAAGTACCGACTAAAAAA
gi|35923 : AGGCT-TA-----AATAAAAA-AATGTT----TGTTT-CCTCTTGTGCAACCAACCCACGAACAAAAAA--GACTGAAAAA
gi|35924 : AGGCC-TA-----AATCAAACAATTTTT----TATCT-CCCCTTG-GTGACTGACCAATGAAATAAGCACTGACTTAAAAA
gi|35925 : AGGCC-TA-----AATAAAAAAAGTGTT----TGTTT-CCCCTTGC
gi|35926 : AGGCC-TA-----AAAAAAAAGA-TGTT----TGTTT-CCGTTTACCCGACCGACCC
gi|35927 : AGGCC-TA-----AAAAAAAAAGATGTT----TGTTT-CCGGTTACCCGACCGACCC
gi|35928 : GGCC-TG-----AATTAAAATATTGTT----TGTTT-CCCCTTGCTTGACCGACCAACGAAAAAAGCACCGACTGAAAA
gi|35929 : GGCA-TA-----AATTAAAAAATTGTT----TGTTT-CCCCTTGCACAACTGAGCCACCAAAAAAGCACTGACTGAAAAA
gi|35930 : GGCCACA-----ATTGAAAGTA-TCTC----TGTTT-CCCCTTGCGTGACTGACCCACGAAAATAGCATCAACTGAAAAA
gi|35931 : GGCC-TA-----AATTAAAAAAATGTT----TGTTTGCCTCTT-C-CGACCGACCCA
gi|35932 : A-----ATTAAAAATATT-TC----TGTTT-ACCCTTGCGTGACCGGTCCACGAAAAAGGCACCGACTGAAAAA
blockSeqs : A CCGTA T G AAAG G
blockSeqs : . . T G . .
blockSeqs : . . T G . .
blockSeqs : . . T G . .
blockSeqs : . . T T . .
blockSeqs : . . A G . .
blockSeqs : . . T G . .
blockSeqs : . . T G . .
blockSeqs : . . T G . .
blockSeqs : . . T T . .
blockSeqs : . . A A . .
blockSeqs : . . A T . .
blockSeqs : . . G G . .
blockSeqs : . . A A . .
blockSeqs : . . T T . .
blockSeqs : . . A T . .
blockSeqs : . . T A . .
blockSeqs : . . A T . .
blockSeqs : . . T . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-CCCCTTGCGCGACCGACCCACGAAAAAAGCACCGACTGAAAAA
finalCons : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-CCCCTTGCGCGACCGACCCACGAAAAAAGCACCGACTGAAAAA
Alignments
lowQualScore : 2 44444 1 4 4444 1
lowQualScore : . ..... . . .... .
lowQualScore : 0 88888 9 2 0000 9
consensus : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-CCCCTTGCGCGACCGACCCACGAAAAAAGCACCGACTGAAAAA
Reference ( family-780 ) : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-CCCCTTGCGCGACCGACCCACGAAAAAAGCACCGACTGAAAAA
gi|35912 : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-CCACTTGCGCGACCGACCCACGAAAAAAGCACCGACTGAAAAA
gi|35913 : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-ACCCTTGCGCGACCGACCCACGAAAAAAGCACCGACTGGAAAA
gi|35914 : AGGCC-AA-----AATAAAAATAGTGTT----TGTTT-CCCCTTGCGCGACCGACCCACAGAAAAAGCACCGACTGAAAAA
gi|35915 : AGGCC-TA-----AATAAAA-TAGTGTT----TGTTT-CCCCTTGTGCGACCAACCCACGAAAAAAGCACCGACTGAAAAA
gi|35916 : AGGCC-TA-----AATAAAAATAGTGTT----TGTTT-CCCCTTGCGCGACTGACCATCGAAAAAAGCACTGGCTGAAAAA
gi|35917 : AGGCC-AA-----AATTAAAATATTGTT----TGTTT-CCGCTTGCGCGACCGACCCACGAAAAAAGCACCGACTGAAA
gi|35918 : AGGCC-TA-----AATAAAAAAAGTGTT----TGTTT-CCTCTTGCGCGACCAACATACGAAAAAAACACCGACTGAAAAA
gi|35919 : AGGCC-TT-----AATGAAAATAGTGTTAAAGTCTTT-CCCCTTGTGCGACCAACCCACGAAAAAAGCACCGACTGAAAAA
gi|35920 : AGGGC-CA-----AATAAAAATAGTGTT----TGTTT-CCTATTGTGCGACCGACCCATGAAAAATGCACCGACTGAAAA
gi|35921 : AGGCC-TACCGTAAATAAAAATAGTGCT----TGTTT-CCTCTTGCGTGACCGACCCAAGGAAAAAGCACTGACTGAAAAA
gi|35922 : AGGCC-CA-----AATTAGAATATTGTT----TGTTT-CCCCTTGTGCGACCCACCTACG-AAAAAGTACCGACTAAAAAA
gi|35923 : AGGCT-TA-----AATAAAAA-AATGTT----TGTTT-CCTCTTGTGCAACCAACCCACGAACAAAAAA--GACTGAAAAA
gi|35924 : AGGCC-TA-----AATCAAACAATTTTT----TATCT-CCCCTTG-GTGACTGACCAATGAAATAAGCACTGACTTAAAAA
gi|35925 : AGGCC-TA-----AATAAAAAAAGTGTT----TGTTT-CCCCTTGC
gi|35926 : AGGCC-TA-----AAAAAAAAGA-TGTT----TGTTT-CCGTTTACCCGACCGACCC
gi|35927 : AGGCC-TA-----AAAAAAAAAGATGTT----TGTTT-CCGGTTACCCGACCGACCC
gi|35928 : GGCC-TG-----AATTAAAATATTGTT----TGTTT-CCCCTTGCTTGACCGACCAACGAAAAAAGCACCGACTGAAAA
gi|35929 : GGCA-TA-----AATTAAAAAATTGTT----TGTTT-CCCCTTGCACAACTGAGCCACCAAAAAAGCACTGACTGAAAAA
gi|35930 : GGCCACA-----ATTGAAAGTA-TCTC----TGTTT-CCCCTTGCGTGACTGACCCACGAAAATAGCATCAACTGAAAAA
gi|35931 : GGCC-TA-----AATTAAAAAAATGTT----TGTTTGCCTCTT-C-CGACCGACCCA
gi|35932 : A-----ATTAAAAATATT-TC----TGTTT-ACCCTTGCGTGACCGGTCCACGAAAAAGGCACCGACTGAAAAA