lowQualScore : 333333333333 1 1111111111 11111 1
lowQualScore : 0 4 2 33 333333333333 777777 2 3 2 33 2 1 3 55555 5555 5555 2 0000000000 5555 22222 2 2 0
lowQualScore : . . . .. ............ ...... . . . .. . . . ..... .... .... . .......... .... ..... . . .
lowQualScore : 9 7 5 44 444444444444 222222 5 5 5 44 5 9 6 66666 0000 0000 5 9999999999 3333 22222 7 7 9
consensus : TTTAGTGAATATGGATT-TCGGCACATGTAAA--CA--C--TCTCG--GTTTTCT------CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCAAGGTA-GGAATGAACTACCGATGGAAGACAATATACT-----TAGTTACATCT----TGGGAGTATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAAT----AAATTACCGT-GTTTT-TCTGTGCCTTGACGTNACTTTTACAAACAAAAA
Reference ( gi|88890 ) : TTTAGTGAACATGTATT-TCGGCACATGTAAA--CA--A--TC--G--GTTTTCT------CGAA-TTGCGTCTTTTATGG-TGA--TAGCTGCAAGGTA-GGAATGAACTACCGATGCAAGACAATATACT-----TAGTTACATCT----TGGGAGTATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAAT----AAATTACCGT-GTTTT-TCTGTGCCTTGACGTCACTTTTACAAACAAAAA
gi|88891 : TTTAATGAACATGTATT-TCGGCACATGTAAA--CA--C--TCTCA--GTTTTCT------CGAA-TTGCGTCTTTTATGG-TGA--TAGCTGCAAGGTA-GGAGTGAACTACTGATGGAAGACAATATACT-----AAGTTACATCT----TGGGAGTACGCATTAAGAAAAATATT----GAG-TA----------TA----AAAT----AAATTACCAT-GTTTT-TCTGTGCCTTGACATTACTTTTACAAACAAAAA
gi|88896 : TTTAGTGAATATGGATT-TCGGTACATGTAAA--CA--C--TCTTG--GTTTTCT------CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCAAGGTA-GGAATGAATTACCGATGGAAGACAATATACT-----TAGTTACATCT----TGGAAGTATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAA-----AAATTACAGT-GTTTT-TCTATGCCTTGATGTTACTTT
gi|88893 : TTTAGTGAATATAGATT-TCGGTACATGTAAA--CA--C--TCTCG--GTTTTCC------CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCAAGGTA-GGAATGAACTACCGATGGAAGACAATATACTTACAATAGTTACATCT----TGAAAGTATGCATTAGGACAAATAAT----GAG-TA----------TA----AAA-----AAATTACCGT-GTTTT-TCTGTGCCTTCATGTAACTTTTATAAACAAAAA
gi|88894 : TTTAGTGAATATGGATT-TCGGTACATGTAAA--CA--C--TCTCG--GTTTTCT------CAAA-TTGCGTCTTTTGTGG-TGA--TAGATGCAAGGTA-GGAATTAACTACTGATGGAAGACAATATACT-----TAGTTACATCT----TGGGAATATGTTTTAA-AAAAATTATGCCGGGG-TA----------TA----AAAT----AAATTACCGT-GTTTT-TCTGTGCCTTGACGTTACTTTTACAAACAAAAA
gi|88898 : TTTAGTGAATAAGGATT-TCAGTACAAGTAAG--CA--C--TCTCG--GTTTTCT------CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCATGGTA-GGAATGAATTACCGATGGAAGACAATATACT-----TAGTTACATCT----TAGTTACATGCATTAAGAAAAATAGT----GAG-TA----------TA----AAAC----AAATTACCGT-GTTTT-TCTGTGCTTTGGCGTAACTTTTACAAACAAAAA
gi|88899 : TTTGGTGAATATGGATT-TCGGTACAAGTAAA--CA--C--TC--G--GTTT-CT------CGAA-TTGCGTCTTTTGTTG-TGA--TAGCTGCATGGTA-TGAATGCACTACTGATGGAAGACAATATACT-----AAGTTACATCT----TGAAAGTATGCATTAAGAAAAATAGT----GAG-TA----------TA----AAAC----AAATAACCGT-GGTTT-TCTGTGCTTTGACGTAACTTTTACATACAAAA
gi|88892 : TTTAGTGAATATGGATT-TCAGTACAAGTAAA--CA--C--TCTCG--GTTTTCT------CGAA-TTGCGTCTCTTGTGG-TGA--TAGCTGCATGGTA-GGAATGAATTACCG-TGGAAGACAATATACT-----TAGTTACATCT----TGGAAGTATGCATTAAGAAAAATAGT----GAG-TA----------TA----AA-----------ACCGT-G-TCT-TCTGTGCTTTGATGTAACTTTTACAAACAAAAA
gi|88902 : TTTAGTGAAGATGTATTAT--GTACATGTAAAACCC--T--TC--G--GTTTTCT------CGAA-TTGCGTCTTTTGTGG-TGA--TAGCAGCAAAGTA-GGAATGAACTACCGATTGAAGATAATAAACT-----TAGTTATATCT----TGGGAGTATGTATTAAGAAAAATAGT----GAG-AA----------TA----AAAT----AAATCATCAT-GTTAT-TCTGTGCATTAACG
gi|88895 : TTTAGTGAATATGGATT-TCGGTACATGCAAA--CACTA--TC--T---TTTTCT------CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGTAAAGTA-CGATTGAACTACCGATGGAAGACAATAAACT-----TAGTAACATCT----TGGGAATATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAA-----AAATGGCT-T-ATTTT-TTTG
gi|88901 : TTTAGTGAACATGTATT-TCGTCACATGTTAA--CA--C--TCTCG--GTTTTCT------CGAA-TTGCGTCTTTTATGG-TGA--TAGCTGCAAGGTA-GGAGTGAACTACCGGTGGAAGACAATATAGT-----TAGTTACATCT----TGGGAATATGCATGAAAAAAAA-AAT----
gi|88900 : TTTAGTGAACATGTATT-TCGGCACATGTAAA--CA--A--TC--TCCGTTTTCT------CGAA-TTGTGTCTTTTATAG-TGA--TAGCTACAAGGTA-GGAGTTAACTACCGATGGAAGACAATATACT-----AAGTTACATCT----TGGGGGTATGCATTAAa
gi|88897 : TTTAGTGAACATGTATT-TCGGCACATGTAAA--CT--C--TCTCG--GTTTTCT------CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCGAGGTA-GGAGTGAACTACTGATAGAATGCAATATACT-----Ta
gi|88903 : TTAGTGAACATGTATT-TCGGCACATGTAAA--CA--C--TCTCG--GTTTTCT------TGAA-TTGCGTCTTTTATGG-TGA--TAGCTGCAAGGTA-GTAATGAACTACTGATGGAAGCCAATAAACT-----TAGTTACATCT----TGGGAGTATGCATTAAGAAAAATAAT----GGA-TA----------TA----AAAT----AAAATACCGT-GTTTT-TCTGTGCCTTGACGTTACTTTTACAAACAAAAA
gi|88904 : TGAATATGGATT-TCATCACACGTTAA--CA--G--TC--TC-GTTTTTTTTTTTTCGAA-TTGCATATTTTTTGGACGA--TTGCTGCACGGGA-GAAGTG-----------CAAGA---TTTGTT-----CAGTTACATCTAAGGTGAG-GTATGCAT----AAAAATAAA----GAG-TAAAGTTATATGTA----GTATGGTTAGATAACCGT-TTTTT-TCCGTGCCTTGACGT
gi|88905 : ATG-TCAGCACATGTCAA--CA--ATGTT--G--GTTACCT------TCAA-TTGCATCTTTCCTGG-TGAACTAACTGCAAAATATAGA---AACTATTGATTGAAGACAAT----T-----T-----CATCT----TGCTCGTGTTCATTAAGA----------------TA----------TC----AAAG----AAATTACCATCATTTT-TCTTTGCTCTGgatgctt
gi|88906 : ACT-TCTGCACATGTAAA--CA--ACGTC--G--ATTTTCT------CTAATTTACACATTTTGCAG-TGA--TAGCTGCA
gi|88907 : GGTG-GG---GAACTACAGATTGAAGACAATATACT-----TAGTTACATCT----TGGGAGTA
gi|88908 : ACTACAGATTGAAGACAATATACT-----TAGTTACATCT----TGGGAGTATGCATTAACAAAAACAGT----GAG-T-----------TA----AAAT----AAATT
gi|88909 : TACCGACGGAAGACAATATACT-----TAGTTACATAT----TGGAAGTATGCATTAAAAAAAA--GT----GAG-TA----------TA----AAAC----AAATTACCTT-GTTTT-TCTGTGCTTTGACGTAACTTTTACAAACAAAAA
gi|88910 : TGCTTTAAGAAAAATAAT----GAG-TA----------TATTAAAAAT----AAATTACTGT-GTTTT-TCTGTGCCTTGATGTTACTTTTACAAACAAAAA
gi|88911 : tggatgtgtAAAACGAG----GAGGTC----------TT----AAAC----AAATAACCGT-GTTTTTTCTGTGCTTTGACGTAACTTTTACAAACAAAAA
Alignments
lowQualScore : 1111111111 11111
lowQualScore : 1 2 2 55555 2 2 33 2 55555 4444 4444 2 0000000000 5555 11111 2 2 1
lowQualScore : . . . ..... . . .. . ..... .... .... . .......... .... ..... . . .
lowQualScore : 7 4 4 99999 4 4 22 4 33333 7777 7777 4 3333333333 0000 00000 5 5 0
consensus : TTTAGTGAACATGGATT-TCGGCACATGTAAACACTCT-CGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCAAGGTA-GGAATGAACTACCGATGGAAGACAATATACT-----TAGTTACATCT----TGGGAGTATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAAT----AAATTACCGT-GTTTT-TCTGTGCCTTGACGTNACTTTTACAAACAAAAA
Reference ( family-772 ) : TTTAGTGAATATGGATT-TCGGCACATGTAAACACTCT-CGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCAAGGTA-GGAATGAACTACCGATGGAAGACAATATACT-----TAGTTACATCT----TGGGAGTATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAAT----AAATTACCGT-GTTTT-TCTGTGCCTTGACGTNACTTTTACAAACAAAAA
gi|88890 : TTTAGTGAACATGTATT-TCGGCACATGTAAACAATC---GGTTTTCT-----CGAA-TTGCGTCTTTTATGG-TGA--TAGCTGCAAGGTA-GGAATGAACTACCGATGCAAGACAATATACT-----TAGTTACATCT----TGGGAGTATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAAT----AAATTACCGT-GTTTT-TCTGTGCCTTGACGTCACTTTTACAAACAAAAA
gi|88891 : TTTAATGAACATGTATT-TCGGCACATGTAAACACTCT-CAGTTTTCT-----CGAA-TTGCGTCTTTTATGG-TGA--TAGCTGCAAGGTA-GGAGTGAACTACTGATGGAAGACAATATACT-----AAGTTACATCT----TGGGAGTACGCATTAAGAAAAATATT----GAG-TA----------TA----AAAT----AAATTACCAT-GTTTT-TCTGTGCCTTGACATTACTTTTACAAACAAAAA
gi|88892 : TTTAGTGAATATGGATT-TCAGTACAAGTAAACACTCT-CGGTTTTCT-----CGAA-TTGCGTCTCTTGTGG-TGA--TAGCTGCATGGTA-GGAATGAATTACCG-TGGAAGACAATATACT-----TAGTTACATCT----TGGAAGTATGCATTAAGAAAAATAGT----GAG-TA----------TA----AA-----------ACCGT-G-TCT-TCTGTGCTTTGATGTAACTTTTACAAACAAAAA
gi|88893 : TTTAGTGAATATAGATT-TCGGTACATGTAAACACTCT-CGGTTTTCC-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCAAGGTA-GGAATGAACTACCGATGGAAGACAATATACTTACAATAGTTACATCT----TGAAAGTATGCATTAGGACAAATAAT----GAG-TA----------TA----AAA-----AAATTACCGT-GTTTT-TCTGTGCCTTCATGTAACTTTTATAAACAAAAA
gi|88894 : TTTAGTGAATATGGATT-TCGGTACATGTAAACACTCT-CGGTTTTCT-----CAAA-TTGCGTCTTTTGTGG-TGA--TAGATGCAAGGTA-GGAATTAACTACTGATGGAAGACAATATACT-----TAGTTACATCT----TGGGAATATGTTTTAA-AAAAATTATGCCGGGG-TA----------TA----AAAT----AAATTACCGT-GTTTT-TCTGTGCCTTGACGTTACTTTTACAAACAAAAA
gi|88895 : TTTAGTGAATATGGATT-TCGGTACATGCAAACACTAT-CT-TTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGTAAAGTA-CGATTGAACTACCGATGGAAGACAATAAACT-----TAGTAACATCT----TGGGAATATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAA-----AAATGGCT-T-ATTTT-TTTG
gi|88896 : TTTAGTGAATATGGATT-TCGGTACATGTAAACACTCT-TGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCAAGGTA-GGAATGAATTACCGATGGAAGACAATATACT-----TAGTTACATCT----TGGAAGTATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAA-----AAATTACAGT-GTTTT-TCTATGCCTTGATGTTACTTT
gi|88897 : TTTAGTGAACATGTATT-TCGGCACATGTAAACTCTCT-CGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCGAGGTA-GGAGTGAACTACTGATAGAATGCAATATACT-----T
gi|88898 : TTTAGTGAATAAGGATT-TCAGTACAAGTAAGCACTCT-CGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCATGGTA-GGAATGAATTACCGATGGAAGACAATATACT-----TAGTTACATCT----TAGTTACATGCATTAAGAAAAATAGT----GAG-TA----------TA----AAAC----AAATTACCGT-GTTTT-TCTGTGCTTTGGCGTAACTTTTACAAACAAAAA
gi|88899 : TTTGGTGAATATGGATT-TCGGTACAAGTAAACACTC---GGTTT-CT-----CGAA-TTGCGTCTTTTGTTG-TGA--TAGCTGCATGGTA-TGAATGCACTACTGATGGAAGACAATATACT-----AAGTTACATCT----TGAAAGTATGCATTAAGAAAAATAGT----GAG-TA----------TA----AAAC----AAATAACCGT-GGTTT-TCTGTGCTTTGACGTAACTTTTACATACAAAA
gi|88900 : TTTAGTGAACATGTATT-TCGGCACATGTAAACAATCT-CCGTTTTCT-----CGAA-TTGTGTCTTTTATAG-TGA--TAGCTACAAGGTA-GGAGTTAACTACCGATGGAAGACAATATACT-----AAGTTACATCT----TGGGGGTATGCATTAA
gi|88901 : TTTAGTGAACATGTATT-TCGTCACATGTTAACACTCT-CGGTTTTCT-----CGAA-TTGCGTCTTTTATGG-TGA--TAGCTGCAAGGTA-GGAGTGAACTACCGGTGGAAGACAATATAGT-----TAGTTACATCT----TGGGAATATGCATGAAAAAAAA-AAT----a
gi|88902 : TTTAGTGAAGATGTATTAT--GTACATGTAAA-ACCCTTCGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCAGCAAAGTA-GGAATGAACTACCGATTGAAGATAATAAACT-----TAGTTATATCT----TGGGAGTATGTATTAAGAAAAATAGT----GAG-AA----------TA----AAAT----AAATCATCAT-GTTAT-TCTGTGCATTAACGa
gi|88903 : TTAGTGAACATGTATT-TCGGCACATGTAAACACTCT-CGGTTTTCT-----TGAA-TTGCGTCTTTTATGG-TGA--TAGCTGCAAGGTA-GTAATGAACTACTGATGGAAGCCAATAAACT-----TAGTTACATCT----TGGGAGTATGCATTAAGAAAAATAAT----GGA-TA----------TA----AAAT----AAAATACCGT-GTTTT-TCTGTGCCTTGACGTTACTTTTACAAACAAAAA
gi|88904 : TGAATATGGATT-TCATCACACGTTAACAGTCT-CGTTTTTTTTTTTTCGAA-TTGCATATTTTTTGGACGA--TTGCTGCACGGGA-GAAGTG------C-----AAGA---TTTGTT-----CAGTTACATCTAAGGTGAG-GTATGCAT----AAAAATAAA----GAG-TAAAGTTATATGTA----GTATGGTTAGATAACCGT-TTTTT-TCCGTGCCTTGACGTG
gi|88905 : ATG-TCAGCACATGTCAACAATGT-TGGTTACCT-----TCAA-TTGCATCTTTCCTGG-TGAACTAACTGCAAAATATAGAA---ACTATTGATTGAAGACAAT----T-----T-----CATCT----TGCTCGTGTTCATTAAGA----------------TA----------TC----AAAG----AAATTACCATCATTTT-TCTTTGCTCTGtgctt
gi|88906 : ACT-TCTGCACATGTAAACAACGT-CGATTTTCT-----CTAATTTACACATTTTGCAG-TGA--TAGCTGCA
gi|88907 : GGTG-GG---GAACTACAGATTGAAGACAATATACT-----TAGTTACATCT----TGGGAGTA
gi|88908 : ACTACAGATTGAAGACAATATACT-----TAGTTACATCT----TGGGAGTATGCATTAACAAAAACAGT----GAG-T-----------TA----AAAT----AAATT
gi|88909 : TACCGACGGAAGACAATATACT-----TAGTTACATAT----TGGAAGTATGCATTAAAAAAAA--GT----GAG-TA----------TA----AAAC----AAATTACCTT-GTTTT-TCTGTGCTTTGACGTAACTTTTACAAACAAAAA
gi|88910 : TGCTTTAAGAAAAATAAT----GAG-TA----------TATTAAAAAT----AAATTACTGT-GTTTT-TCTGTGCCTTGATGTTACTTTTACAAACAAAAA
gi|88911 : tggatgtgtAAAACGAG----GAGGTC----------TT----AAAC----AAATAACCGT-GTTTTTTCTGTGCTTTGACGTAACTTTTACAAACAAAAA
Alignments
lowQualScore : 1111111111 11111
lowQualScore : 0 1 2 2 55555 2 2 33 2 55555 4444 4444 2 0000000000 5555 11111 2 2 1
lowQualScore : . . . . ..... . . .. . ..... .... .... . .......... .... ..... . . .
lowQualScore : 2 7 4 4 99999 4 4 22 4 33333 7777 7777 4 3333333333 0000 00000 5 5 0
consensus : TTTAGTGAACATGGATT-TCGGCACATGTAAACACTCT-CGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCAAGGTA-GGAATGAACTACCGATGGAAGACAATATACT-----TAGTTACATCT----TGGGAGTATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAAT----AAATTACCGT-GTTTT-TCTGTGCCTTGACGTNACTTTTACAAACAAAAA
Reference ( family-772 ) : TTTAGTGAACATGGATT-TCGGCACATGTAAACACTCT-CGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCAAGGTA-GGAATGAACTACCGATGGAAGACAATATACT-----TAGTTACATCT----TGGGAGTATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAAT----AAATTACCGT-GTTTT-TCTGTGCCTTGACGTNACTTTTACAAACAAAAA
gi|88890 : TTTAGTGAACATGTATT-TCGGCACATGTAAACAATC---GGTTTTCT-----CGAA-TTGCGTCTTTTATGG-TGA--TAGCTGCAAGGTA-GGAATGAACTACCGATGCAAGACAATATACT-----TAGTTACATCT----TGGGAGTATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAAT----AAATTACCGT-GTTTT-TCTGTGCCTTGACGTCACTTTTACAAACAAAAA
gi|88891 : TTTAATGAACATGTATT-TCGGCACATGTAAACACTCT-CAGTTTTCT-----CGAA-TTGCGTCTTTTATGG-TGA--TAGCTGCAAGGTA-GGAGTGAACTACTGATGGAAGACAATATACT-----AAGTTACATCT----TGGGAGTACGCATTAAGAAAAATATT----GAG-TA----------TA----AAAT----AAATTACCAT-GTTTT-TCTGTGCCTTGACATTACTTTTACAAACAAAAA
gi|88892 : TTTAGTGAATATGGATT-TCAGTACAAGTAAACACTCT-CGGTTTTCT-----CGAA-TTGCGTCTCTTGTGG-TGA--TAGCTGCATGGTA-GGAATGAATTACCG-TGGAAGACAATATACT-----TAGTTACATCT----TGGAAGTATGCATTAAGAAAAATAGT----GAG-TA----------TA----AA-----------ACCGT-G-TCT-TCTGTGCTTTGATGTAACTTTTACAAACAAAAA
gi|88893 : TTTAGTGAATATAGATT-TCGGTACATGTAAACACTCT-CGGTTTTCC-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCAAGGTA-GGAATGAACTACCGATGGAAGACAATATACTTACAATAGTTACATCT----TGAAAGTATGCATTAGGACAAATAAT----GAG-TA----------TA----AAA-----AAATTACCGT-GTTTT-TCTGTGCCTTCATGTAACTTTTATAAACAAAAA
gi|88894 : TTTAGTGAATATGGATT-TCGGTACATGTAAACACTCT-CGGTTTTCT-----CAAA-TTGCGTCTTTTGTGG-TGA--TAGATGCAAGGTA-GGAATTAACTACTGATGGAAGACAATATACT-----TAGTTACATCT----TGGGAATATGTTTTAA-AAAAATTATGCCGGGG-TA----------TA----AAAT----AAATTACCGT-GTTTT-TCTGTGCCTTGACGTTACTTTTACAAACAAAAA
gi|88895 : TTTAGTGAATATGGATT-TCGGTACATGCAAACACTAT-CT-TTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGTAAAGTA-CGATTGAACTACCGATGGAAGACAATAAACT-----TAGTAACATCT----TGGGAATATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAA-----AAATGGCT-T-ATTTT-TTTG
gi|88896 : TTTAGTGAATATGGATT-TCGGTACATGTAAACACTCT-TGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCAAGGTA-GGAATGAATTACCGATGGAAGACAATATACT-----TAGTTACATCT----TGGAAGTATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAA-----AAATTACAGT-GTTTT-TCTATGCCTTGATGTTACTTT
gi|88897 : TTTAGTGAACATGTATT-TCGGCACATGTAAACTCTCT-CGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCGAGGTA-GGAGTGAACTACTGATAGAATGCAATATACT-----T
gi|88898 : TTTAGTGAATAAGGATT-TCAGTACAAGTAAGCACTCT-CGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCATGGTA-GGAATGAATTACCGATGGAAGACAATATACT-----TAGTTACATCT----TAGTTACATGCATTAAGAAAAATAGT----GAG-TA----------TA----AAAC----AAATTACCGT-GTTTT-TCTGTGCTTTGGCGTAACTTTTACAAACAAAAA
gi|88899 : TTTGGTGAATATGGATT-TCGGTACAAGTAAACACTC---GGTTT-CT-----CGAA-TTGCGTCTTTTGTTG-TGA--TAGCTGCATGGTA-TGAATGCACTACTGATGGAAGACAATATACT-----AAGTTACATCT----TGAAAGTATGCATTAAGAAAAATAGT----GAG-TA----------TA----AAAC----AAATAACCGT-GGTTT-TCTGTGCTTTGACGTAACTTTTACATACAAAA
gi|88900 : TTTAGTGAACATGTATT-TCGGCACATGTAAACAATCT-CCGTTTTCT-----CGAA-TTGTGTCTTTTATAG-TGA--TAGCTACAAGGTA-GGAGTTAACTACCGATGGAAGACAATATACT-----AAGTTACATCT----TGGGGGTATGCATTAA
gi|88901 : TTTAGTGAACATGTATT-TCGTCACATGTTAACACTCT-CGGTTTTCT-----CGAA-TTGCGTCTTTTATGG-TGA--TAGCTGCAAGGTA-GGAGTGAACTACCGGTGGAAGACAATATAGT-----TAGTTACATCT----TGGGAATATGCATGAAAAAAAA-AAT----a
gi|88902 : TTTAGTGAAGATGTATTAT--GTACATGTAAA-ACCCTTCGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCAGCAAAGTA-GGAATGAACTACCGATTGAAGATAATAAACT-----TAGTTATATCT----TGGGAGTATGTATTAAGAAAAATAGT----GAG-AA----------TA----AAAT----AAATCATCAT-GTTAT-TCTGTGCATTAACGa
gi|88903 : TTAGTGAACATGTATT-TCGGCACATGTAAACACTCT-CGGTTTTCT-----TGAA-TTGCGTCTTTTATGG-TGA--TAGCTGCAAGGTA-GTAATGAACTACTGATGGAAGCCAATAAACT-----TAGTTACATCT----TGGGAGTATGCATTAAGAAAAATAAT----GGA-TA----------TA----AAAT----AAAATACCGT-GTTTT-TCTGTGCCTTGACGTTACTTTTACAAACAAAAA
gi|88904 : TGAATATGGATT-TCATCACACGTTAACAGTCT-CGTTTTTTTTTTTTCGAA-TTGCATATTTTTTGGACGA--TTGCTGCACGGGA-GAAGTG------C-----AAGA---TTTGTT-----CAGTTACATCTAAGGTGAG-GTATGCAT----AAAAATAAA----GAG-TAAAGTTATATGTA----GTATGGTTAGATAACCGT-TTTTT-TCCGTGCCTTGACGTG
gi|88905 : ATG-TCAGCACATGTCAACAATGT-TGGTTACCT-----TCAA-TTGCATCTTTCCTGG-TGAACTAACTGCAAAATATAGAA---ACTATTGATTGAAGACAAT----T-----T-----CATCT----TGCTCGTGTTCATTAAGA----------------TA----------TC----AAAG----AAATTACCATCATTTT-TCTTTGCTCTGtgctt
gi|88906 : ACT-TCTGCACATGTAAACAACGT-CGATTTTCT-----CTAATTTACACATTTTGCAG-TGA--TAGCTGCA
gi|88907 : GGTG-GG---GAACTACAGATTGAAGACAATATACT-----TAGTTACATCT----TGGGAGTA
gi|88908 : ACTACAGATTGAAGACAATATACT-----TAGTTACATCT----TGGGAGTATGCATTAACAAAAACAGT----GAG-T-----------TA----AAAT----AAATT
gi|88909 : TACCGACGGAAGACAATATACT-----TAGTTACATAT----TGGAAGTATGCATTAAAAAAAA--GT----GAG-TA----------TA----AAAC----AAATTACCTT-GTTTT-TCTGTGCTTTGACGTAACTTTTACAAACAAAAA
gi|88910 : TGCTTTAAGAAAAATAAT----GAG-TA----------TATTAAAAAT----AAATTACTGT-GTTTT-TCTGTGCCTTGATGTTACTTTTACAAACAAAAA
gi|88911 : tggatgtgtAAAACGAG----GAGGTC----------TT----AAAC----AAATAACCGT-GTTTTTTCTGTGCTTTGACGTAACTTTTACAAACAAAAA
blockSeqs : T A T TTTTT T A AC T TACAA AAGG GCCG G AAGTTATATG TTAA TGGTT C T T
blockSeqs : G . . . . . . . . . . . . . T . . A
blockSeqs : G . . . . . . . . . . . . . T . . A
blockSeqs : G . . . . . . . . . . . . . C . . T
blockSeqs : G . . . . . . . . . . . . . C . . T
blockSeqs : G . . . . . . . . . . . . . T . . A
blockSeqs : T . . . . . . . . . . . . . T . . A
blockSeqs : G . . . . . . . . . . . . . G . . T
blockSeqs : G . . . . . . . . . . . . . T . . G
blockSeqs : T . . . . . . . . . . . . . C . . A
blockSeqs : T . . . . . . . . . . . . . T . . T
blockSeqs : T . . . . . . . . . . . . . C . . A
blockSeqs : T . . . . . . . . . . . . . . . .
blockSeqs : G . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons :
originalCons : TTTAGTGAACATGGATT-TCGGCACATGTAAACACTCT-CGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCAAGGTA-GGAATGAACTACCGATGGAAGACAATATACT-----TAGTTACATCT----TGGGAGTATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAAT----AAATTACCGT-GTTTT-TCTGTGCCTTGACGTNACTTTTACAAACAAAAA
finalCons : TTTAGTGAACATGGATT-TCGGCACATGTAAACACTCT-CGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCAAGGTA-GGAATGAACTACCGATGGAAGACAATATACT-----TAGTTACATCT----TGGGAGTATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAAT----AAATTACCGT-GTTTT-TCTGTGCCTTGACGTNACTTTTACAAACAAAAA
Alignments
lowQualScore : 1111111111 11111
lowQualScore : 0 1 2 2 55555 2 2 33 2 55555 4444 4444 2 0000000000 5555 11111 2 2 1
lowQualScore : . . . . ..... . . .. . ..... .... .... . .......... .... ..... . . .
lowQualScore : 2 7 4 4 99999 4 4 22 4 33333 7777 7777 4 3333333333 0000 00000 5 5 0
consensus : TTTAGTGAACATGGATT-TCGGCACATGTAAACACTCT-CGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCAAGGTA-GGAATGAACTACCGATGGAAGACAATATACT-----TAGTTACATCT----TGGGAGTATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAAT----AAATTACCGT-GTTTT-TCTGTGCCTTGACGTNACTTTTACAAACAAAAA
Reference ( family-772 ) : TTTAGTGAACATGGATT-TCGGCACATGTAAACACTCT-CGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCAAGGTA-GGAATGAACTACCGATGGAAGACAATATACT-----TAGTTACATCT----TGGGAGTATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAAT----AAATTACCGT-GTTTT-TCTGTGCCTTGACGTNACTTTTACAAACAAAAA
gi|88890 : TTTAGTGAACATGTATT-TCGGCACATGTAAACAATC---GGTTTTCT-----CGAA-TTGCGTCTTTTATGG-TGA--TAGCTGCAAGGTA-GGAATGAACTACCGATGCAAGACAATATACT-----TAGTTACATCT----TGGGAGTATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAAT----AAATTACCGT-GTTTT-TCTGTGCCTTGACGTCACTTTTACAAACAAAAA
gi|88891 : TTTAATGAACATGTATT-TCGGCACATGTAAACACTCT-CAGTTTTCT-----CGAA-TTGCGTCTTTTATGG-TGA--TAGCTGCAAGGTA-GGAGTGAACTACTGATGGAAGACAATATACT-----AAGTTACATCT----TGGGAGTACGCATTAAGAAAAATATT----GAG-TA----------TA----AAAT----AAATTACCAT-GTTTT-TCTGTGCCTTGACATTACTTTTACAAACAAAAA
gi|88892 : TTTAGTGAATATGGATT-TCAGTACAAGTAAACACTCT-CGGTTTTCT-----CGAA-TTGCGTCTCTTGTGG-TGA--TAGCTGCATGGTA-GGAATGAATTACCG-TGGAAGACAATATACT-----TAGTTACATCT----TGGAAGTATGCATTAAGAAAAATAGT----GAG-TA----------TA----AA-----------ACCGT-G-TCT-TCTGTGCTTTGATGTAACTTTTACAAACAAAAA
gi|88893 : TTTAGTGAATATAGATT-TCGGTACATGTAAACACTCT-CGGTTTTCC-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCAAGGTA-GGAATGAACTACCGATGGAAGACAATATACTTACAATAGTTACATCT----TGAAAGTATGCATTAGGACAAATAAT----GAG-TA----------TA----AAA-----AAATTACCGT-GTTTT-TCTGTGCCTTCATGTAACTTTTATAAACAAAAA
gi|88894 : TTTAGTGAATATGGATT-TCGGTACATGTAAACACTCT-CGGTTTTCT-----CAAA-TTGCGTCTTTTGTGG-TGA--TAGATGCAAGGTA-GGAATTAACTACTGATGGAAGACAATATACT-----TAGTTACATCT----TGGGAATATGTTTTAA-AAAAATTATGCCGGGG-TA----------TA----AAAT----AAATTACCGT-GTTTT-TCTGTGCCTTGACGTTACTTTTACAAACAAAAA
gi|88895 : TTTAGTGAATATGGATT-TCGGTACATGCAAACACTAT-CT-TTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGTAAAGTA-CGATTGAACTACCGATGGAAGACAATAAACT-----TAGTAACATCT----TGGGAATATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAA-----AAATGGCT-T-ATTTT-TTTG
gi|88896 : TTTAGTGAATATGGATT-TCGGTACATGTAAACACTCT-TGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCAAGGTA-GGAATGAATTACCGATGGAAGACAATATACT-----TAGTTACATCT----TGGAAGTATGCATTAAGAAAAATAAT----GAG-TA----------TA----AAA-----AAATTACAGT-GTTTT-TCTATGCCTTGATGTTACTTT
gi|88897 : TTTAGTGAACATGTATT-TCGGCACATGTAAACTCTCT-CGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCGAGGTA-GGAGTGAACTACTGATAGAATGCAATATACT-----T
gi|88898 : TTTAGTGAATAAGGATT-TCAGTACAAGTAAGCACTCT-CGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCTGCATGGTA-GGAATGAATTACCGATGGAAGACAATATACT-----TAGTTACATCT----TAGTTACATGCATTAAGAAAAATAGT----GAG-TA----------TA----AAAC----AAATTACCGT-GTTTT-TCTGTGCTTTGGCGTAACTTTTACAAACAAAAA
gi|88899 : TTTGGTGAATATGGATT-TCGGTACAAGTAAACACTC---GGTTT-CT-----CGAA-TTGCGTCTTTTGTTG-TGA--TAGCTGCATGGTA-TGAATGCACTACTGATGGAAGACAATATACT-----AAGTTACATCT----TGAAAGTATGCATTAAGAAAAATAGT----GAG-TA----------TA----AAAC----AAATAACCGT-GGTTT-TCTGTGCTTTGACGTAACTTTTACATACAAAA
gi|88900 : TTTAGTGAACATGTATT-TCGGCACATGTAAACAATCT-CCGTTTTCT-----CGAA-TTGTGTCTTTTATAG-TGA--TAGCTACAAGGTA-GGAGTTAACTACCGATGGAAGACAATATACT-----AAGTTACATCT----TGGGGGTATGCATTAA
gi|88901 : TTTAGTGAACATGTATT-TCGTCACATGTTAACACTCT-CGGTTTTCT-----CGAA-TTGCGTCTTTTATGG-TGA--TAGCTGCAAGGTA-GGAGTGAACTACCGGTGGAAGACAATATAGT-----TAGTTACATCT----TGGGAATATGCATGAAAAAAAA-AAT----a
gi|88902 : TTTAGTGAAGATGTATTAT--GTACATGTAAA-ACCCTTCGGTTTTCT-----CGAA-TTGCGTCTTTTGTGG-TGA--TAGCAGCAAAGTA-GGAATGAACTACCGATTGAAGATAATAAACT-----TAGTTATATCT----TGGGAGTATGTATTAAGAAAAATAGT----GAG-AA----------TA----AAAT----AAATCATCAT-GTTAT-TCTGTGCATTAACGa
gi|88903 : TTAGTGAACATGTATT-TCGGCACATGTAAACACTCT-CGGTTTTCT-----TGAA-TTGCGTCTTTTATGG-TGA--TAGCTGCAAGGTA-GTAATGAACTACTGATGGAAGCCAATAAACT-----TAGTTACATCT----TGGGAGTATGCATTAAGAAAAATAAT----GGA-TA----------TA----AAAT----AAAATACCGT-GTTTT-TCTGTGCCTTGACGTTACTTTTACAAACAAAAA
gi|88904 : TGAATATGGATT-TCATCACACGTTAACAGTCT-CGTTTTTTTTTTTTCGAA-TTGCATATTTTTTGGACGA--TTGCTGCACGGGA-GAAGTG------C-----AAGA---TTTGTT-----CAGTTACATCTAAGGTGAG-GTATGCAT----AAAAATAAA----GAG-TAAAGTTATATGTA----GTATGGTTAGATAACCGT-TTTTT-TCCGTGCCTTGACGTG
gi|88905 : ATG-TCAGCACATGTCAACAATGT-TGGTTACCT-----TCAA-TTGCATCTTTCCTGG-TGAACTAACTGCAAAATATAGAA---ACTATTGATTGAAGACAAT----T-----T-----CATCT----TGCTCGTGTTCATTAAGA----------------TA----------TC----AAAG----AAATTACCATCATTTT-TCTTTGCTCTGtgctt
gi|88906 : ACT-TCTGCACATGTAAACAACGT-CGATTTTCT-----CTAATTTACACATTTTGCAG-TGA--TAGCTGCA
gi|88907 : GGTG-GG---GAACTACAGATTGAAGACAATATACT-----TAGTTACATCT----TGGGAGTA
gi|88908 : ACTACAGATTGAAGACAATATACT-----TAGTTACATCT----TGGGAGTATGCATTAACAAAAACAGT----GAG-T-----------TA----AAAT----AAATT
gi|88909 : TACCGACGGAAGACAATATACT-----TAGTTACATAT----TGGAAGTATGCATTAAAAAAAA--GT----GAG-TA----------TA----AAAC----AAATTACCTT-GTTTT-TCTGTGCTTTGACGTAACTTTTACAAACAAAAA
gi|88910 : TGCTTTAAGAAAAATAAT----GAG-TA----------TATTAAAAAT----AAATTACTGT-GTTTT-TCTGTGCCTTGATGTTACTTTTACAAACAAAAA
gi|88911 : tggatgtgtAAAACGAG----GAGGTC----------TT----AAAC----AAATAACCGT-GTTTTTTCTGTGCTTTGACGTAACTTTTACAAACAAAAA