lowQualScore : 11111 111 333 1 1 1 22222222 3333333333 22 222222222222 1 33333333333333333 1111 1 1 111111 11 1111 1 222 11111111 44444444444 111111 33333 11 1 11 1111
lowQualScore : 6 2 99999 3 0 4 5 777 00000 000 000 4 4 0 55 55 3 55 3 3 7777 5 777 4 0 22222222 3 99 4 1 3 4 5555555555 4 4 3 3 33 222222222222 3 4 2 33333333333333333 2 777 0000 11 7 4 2 66 4 5 111111 1 11 3333 0 2 333 77777777 2 33 22 5555 0 0 2 6 444 5555 33333333333 2 000000 7 6 55555 5555 00 5 5 66 0 4 3 555 5 0 5 11 22 7 9 3333 3 3 3 555
lowQualScore : . . ..... . . . . ... ..... ... ... . . . .. .. . .. . . .... . ... . . ........ . .. . . . . .......... . . . . .. ............ . . . ................. . ... .... .. . . . .. . . ...... . .. .... . . ... ........ . .. .. .... . . . . ... .... ........... . ...... . . ..... .... .. . . .. . . . ... . . . .. .. . . .... . . . ...
lowQualScore : 0 0 11111 6 9 0 4 000 00000 111 222 0 0 3 00 00 3 00 6 6 7777 4 000 0 7 77777777 6 44 0 2 0 0 8888888888 0 0 0 9 22 888888888888 9 1 9 88888888888888888 6 000 0000 55 0 4 7 22 4 0 555555 4 44 7777 7 7 333 33333333 7 77 55 3333 7 7 7 7 777 7777 77777777777 7 666666 7 7 00000 7777 44 3 0 33 1 3 6 000 7 1 4 88 44 2 2 1111 1 1 3 888
consensus : GAGTGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTGACCGCTAT-AAGAGA---AGGAAAATCACCAACAGT-----GAATCACGGTTAAACACAA-T-TT-TTACT--AA--ATTAATAAC--TGTTATT-TTAGTGAAAC-ATAC----ACCGATCGAAA---G-CTGAACTATTACCTGATCGAGTGATGTTAACATATTCAT---AGAAAC-TGGCGTAACTA-CG-GAGAATTAAGCATTTATTCACGGGCATTCCTTCGC-AAAA--CG-----GCGAAAAATA-CCCAC-AACCATTTCATACAGTACTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG------------ATAAACNTATAATTAGATTANTAAAGTATAAAAATAAAAGAAAACAG----------------CGTNATTAACTTTAGTA---AAATA--G-AAAAATTAGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATATCATTTATGTAAATTAC------AAAATAGGCTTCATCTTTN-ATTA-A--AAATAT-ANACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATCGGTGGGTCGTGTTCTT-ACAAAATC---AAA----AG-A---------A-AATTTAA----TANTTTCTAAAT--GCGAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGCGGTTGCAAATCACGCGTCACGG---AAACGAGAA-TTAGCCG--CGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-AC-T---TCATACTCGT
Reference ( gi|111358 ) : GAATGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTAACCGCTAT-AATAGA---AGGAAAATCACCAACAGT-----GAATCACGGTTAAACACAAAT-TT-TTGCT--AA--ATTTATAAC--TGTTATT-TTAGTGAAAC-ATAC----ACCGACCGAAA---G-CTGAACTATAACCTGATCGAGTGATGTTAACATATTAAA---AGAAAC-TGGCGTAACTA-TG-GAGAATTAAGCATTTACTCACGGGCATTTCTTCGC-AAAT--CG-----GCGAAAAATA-CCCAC-AATCATTTCATACAGTATTGTAGTAGCTAGTACAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATAAGATTAGTAAAGTATAAAAATAAAAGAAAACAA----------------CGTTATTAACTTTAGTA---AAATA--G-AAAAATTTGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATATCATTGATGTAAATTAC------AAAATAGGCTTCATCTTTT-ATTA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATC---AAA----AG-A---------A-AATTTAA----TAATTTGTAAAT--GCCAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGTGGTTGCATATCACGCGTCACGG---AAACGAGAA-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TCATACTCGT
gi|111359 : GAGTGTTATTTTACTCATGAAACGTACATTTATGACAATAGAAAAT-----AG-ACGTGTTATAAACCGCTAT-AATAGA---AGGAAAATCAACAGCAGT-----GAATCACGGTTTAACAC----------------A--ATTAATAAC--TGTTATT-TTAGTGAAAC-ATAC----ACCGATCCAAACCTGCCTGAACTATGACCTGATCGAGTGATGTTAACATATTAAT---ATGAAC-TGGCGTAACTA-CG-GAGAATTAAGCATTTATTCACGGGCATTCCTTCGC-AAAA--CG-----GCGAAAAATA-CCCAC-AACCATTTCATACAGTATTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATTAAATTTGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTTTGTA---AAATA--T-AAAATTTAGATGTTGAATAACA-CAGATTT-AAAA-ACATGATGAACAACATATCATTTAAGTAAATTAC------AAAAAAGGCTTCATCTTTT-ATTA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATTGGTGGGCCGTGTTCTT-AC-AAATC---AAA----AG-A---------A-AATTTAA----TAATTTGTAAAT--GCGAAAAAA----TTAAGAAAAAATAAGCA-TAATTTA-AGGCAATATGCGGTTGCATATCACGCTTCAAGG---TAACAAGAA-TTAGCCG--TGGCGCTTATGAA-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TCTTTCTCGT
gi|111360 : GAGTGTTATTTTACTCTTAAAACATACACTTATAACAATAGAAA-T-----AG-ACGTGTTATTGGCCGCTAT-AAGAGA---AAGAAAATTACCAACAGT-----GAATCAC----AAACACAA-T-TT-TTACT--AT--ATTAATAAC--TGTTATT-TAAGTGAAAC-ATAC----ATCGATCGAAA---G-CTAAACTATAACCTGATCGAGTGATGTTAACATATTCAT---AGAAAC-TGGCGTAACTA-CG-GAGAATTAAGCATTTTCTCACGGGCATTCCTTCGC-AAAAAACG-----GCGAAAAATA-CCCAC-AACCATGTCATGCTGTACTGTAATAGTTATTGAAATCGCTGATTAATCAACCTGAATG------------ATAAACTTATAATTAGATTATTAAAGTATAAAAATAAAAGAAGACAG----------------CGTAATTAACTTTAGTA---AAATA--A-AATAATTAAATATTGAATAACA-TGAATATAAAAA-ACATGATGAACAACATATCACTTACGTAAATTAC------AAAATAGGCTTCATCTTTA-ATTA-A--GAATAT-ATACTACACAAATAAATAA--------GT-TA--TTCTT----GAAACAATGACTGATCGGTGGGTTATGTTCTT-ACAAAATC---AAA----AG-T---------G-AAGATAA----TATTTTCTAAAC--G-GAATTAA----TTA---AAAAATAAGCATTAATTTA-AGGCAATATGCTGTTGCAAATCACGCGTCACGG---AAACGAAAA-AAGGCCG--CGGCGCTT---AT-ATCAATCACTTATT----CTAAGTCAATT-AAAT-AC-T---TCATATTCGT
gi|111362 : GAGTGTTATTTTACTCTTAAAACATACACTTATTACAATAGAAAAT-----AG-ACGTGTTATTGGCCGCTAT-AAGAGATAAAAGAAAATCACCAACAGT-----GAATCA----TAAACACAG-T-TT-TTACT--AA--ATTAACAAC--TGTTATT-TTAGTGAAAC-ACGC----ATCGATCGAAA---G-CTAAACTATTATCTGATCGAGTGATGTTAACATATTCAT---AGAAAC-TGGCGTAACTA-CG-GAGAATTAAGCATTTTCTCACGGGCATTCCTTCGCAAAAA--CG-----GCGAAAAATA-CCCAC-AACCATGTCATGCAGTACTGTAATAGCTAGTGAAATCGCTGTTTAAACAACATGAATG------------ATAAACTTATAATTAGATTATTAAAGTATAAAAAT-----ATAACAG----------------CGTTATTAACTTTAGTG---AAATA--A-AAATATTAAATATTGAATAACA-TAAATAT-AAAA-ACATGATGAACAACATATCA
gi|111363 : GAGTGTTATTTTACTCTTAAAACATACACTTATGACTACAGAAAAT-----AG-ACGTGTTATTAACCGCTAT-AATAGA---AGAAAAATCACCAACAGT-----GAATCACGGCTAAACACAA----T-TCAC---AA--AT---CAA----GTTACA-CT--TGAAACAATG-----ACCGATCGgcattta
gi|111361 : GAGTGTTATTT-ACTCTTAAAACGTACACTTATGACAATAGAAAATTAATAAC-AC-TGTTATT
gi|111366 : AGTGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAC-----AG-ACGTGTTATTAACCGCTAT-AAGAGA---AGGAAAATCACCAACAGT-----GAAATGCGGTTAAACACAATT-TT-TTACT--AG--ATTAATAAC--TTTTATT-TCAGTGAAAC-ATAC----ACCGATCGAAA---G-CTGAACTATTATCTGATCGAGTGATGTTTACATAGTAAT---AGAAAC-TAGCGTAACTA-CG-GAGAATTAAGCATTTATTAACGGGCATTCCTTCGC-AAAAA-CG-----GCGAAAATTA-CCCAC-AACCATTTCGTACAGTACTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTAAGTA---AAATA--GAAAAAAATAGATGTTAAATAACA-TAGATAT--TAA-ACATGATGAACAACATATCATTTATGTCAATTAC------AAAATAGGCTTCATCTTTT-ATTA-A--AAATGT-AAACTACGCAAAT---CAA--------GT-TA--TAATT----GAAACAATGACCGATCGGTGGGCCGTGTTCTA-ACAAAATC---AAA----AG-A---------A-AATTTTA----TTATTTGTAAAT--GCGAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGCGGTTGCAAATCACGCGTCACGG---AAACAAGAA-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTACTT----CTAAGTCAGTT-AAATAAC-T---TTATACTCGT
gi|111367 : AGTGTTGTTTGACTCTTAAAACATACATTTATGACAAAAGAAAAT-----AA-CCGTGTTATTGACCGCTAT-AATGGT---AGGGAAATGACCCACAGT-----GAATCACAGTTAAACATGA-T-TT-TTACT--TA--ATGTAGAGC--TATTATT-TTAGTGATAC-ATAC----GCTGATCGGAA---G-CTAAACTAATACCTGATCGAATGATATTAACATATCTAT---AGAGAC-AGGCATAAC----G-GGTAATTGCGCATTTATCAACGAGCATTCCTTCGC-AAAA--AAAAAAAGCGAAAGATTTCCCAC-AACCATTTCACACAGTATTATTATAGTCATTGAAATTGCTGTTTATACAACATGAATG------------ATAAAGTTATCATTAGATTATTTAAGTATAAAAATAGAAGAAAACAATTACAATAAACAATAACGTAATTAACTTTAGTA---AATTA--A-ATGTATTAAGTATTGAATAATACTATTTAT-CAAA-ACATGAGGAACAAAATATCATTCATGTAAATTAC------AAAATAGGCTTCATCTTTA-GTTA-A--GAATAT-ATACTATACAAATAAACAA--------GT-TA--TTCTT----AAAACAATAACAGATCAGTGGGCCATGTTCGT-ACAAAATC---AAA----TG-T---------ATAGTTTAA-----ATTTTCTAAAT--GCGAATAAA----TTAAG-AAAAATAAACATTAATTTA-TGGCAATTTGCAGTTGTAAATCACGCGTTACGG---AAACGAAAA-CTGGACA--CGCTCCTAATAAA-ATCAATCACTATTT----CTAAGTCAATT-AAAT-ACAG---TAATATTCGT
gi|111368 : TGTTATTTTACTCTTAAAACATACACTTATTAATATAGAACAT-----AG-ACGTGTTATTGGCCGCTAT-AAGAGA---AAGAAAATCACCAACAGT-----GAATCAC----AAACACAA-T-TT-TTACT--AA--ATTAATAAC--TGTTATT-TTAGTGAAAC-ATAC----ATCTATCGAAA---G-TTAAACTATTACCTGATCGAATGATGTTAACATATTCAT---AGAAAC-TGGCGTAACTA-CT-GAGAATTAAGCATTTTCTCATGGGCATTCCTTCGC-AAAAAACG-----GCGACAAATA-CCCTC-AATCATCTCAGGCAGTACTGTAATAGCTATTGAAATCGCTGATTTAACAACATAAATG------------ATAAACTTATAATTAGATTATTTAAGTATAGAAATAAAAGAAGACAG----------------CGTAATTAACTTTAGTA---AAATA--A-AAATATTAAATATTGAATAACA-TAAATAT-AAAA-ACATAATGAACAACATATCATTTATGTAAATTAC------AAAATAGGCTTCATCTTTA-ACTA-A--GAATAT-ATACTACACAAATAAATAA--------AT-TA--TTCTT----GAAACAATGACTGATCGGTGAGTTATGTTTTT-ACAAAATC---AAA----AG-T---------A-AAGATAA----TATTTTCTAAAC--G-GAATTAA----TTAAA-AAA---AAGCATAAATTTA-AGGCAAAATGCAGTTGCAAATCACGTGTCACGG---AAACGAAAA-TAGGCCG--CAGTGC---TAAT-ATCAATCAATAATT----CTATGTCATTT-AAAT-AC-T---TCATATTCGT
gi|111364 : gTGTTATTTTACTCTTAAAACATACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTAACCGCTAT-AAGAGA---AGGAAAATCCCCAACAGA-----GAATCACGTTTAAACACAATT-TTATT--T--AA--ATTGGTAAC--TGTTATT-TTAGTGAAAC-ATAC----ACCGATCGAAA---G-CTAAACTATTACCTGATCGAGTGATGTTAACATAGCCAT---AGAAAC-TGGTGTAACTA-CG-GAGAAGTAAGAATTTATACACGGGTATTCCTT------------------CGAAAAATA-ATCGCAAACCATTGTATA
gi|111365 : gggTGTTATTTTACTATTAAAACGTACACTTATAACAATAGAAAAT-----AG-ACGTGT--TTGACCGCTAT-AAGAGA---AGGAAAATCACCAACAGTATCTGAAATCA-AATTAAACAC--ATCTT-TTACT--AA--ATTAATAAC---G-TATA-ATAGTGAAAC-ATACACCTACCTACCGAAA---G-CTGAGCTATTACCTGATTAGGTGATGTTAACATATTCAT---AGGGGCGTAGCGTGAC
gi|111369 : gggTTAT--CGATATAACA------AGCACGTGCTATTCACGGTCATGAATA-A---AGGCGAATAGGCAACAGT-----GATTCGCAGCGAAACACAT-T-TT-TTACTCAAATGATTCATAAC--CGGTATTGTTAGCGATAC-ATGC----ACAGTTTGGAA---G-CTGAACACTAAA-TGATGTAATGTTGTTAACATG---AACATACAAAC-TGACGTCGCCACTGTAAGA--TACGCATTGATTTATAAGCACTCATTTAC-A--T------------AAAAA-----CAC-AAT---TTCATGTAGTGTTG------CTA------TCACTCTTTAAACAATATGAATGCATTTTACTGATATAA---TATAATACGATTAATTGAGAATGAGGATAAAAGCAAACAG----------------TATAATTAACTTCTGCATCGAAATAATG-AACAA
gi|111370 : --AA--ATTAATAACACTGTTATT-TAAGTGACAC-ATAC----ACTGAGCGAGA---G-CTGAACTATTACCTAATCGAG---------------------AGCAAC-TGGCGTAACTA-CG-GAGAATTAAGCATTTATTCACGGGCATTTCTTCGT-AAAA--CG-----GCGAAAAATA-CCCAC-A-CCATTTCATACACTATTATAGTAGCCAGTTAAATCGGTGATTAAACAACATGAATG------------ATAAACGTATTATTAGATTAGTAAAGTATAACAATAAAAGAAAACAG----------------CTTTATTAACTTTAGTA---AAATA--G-AAAAATTAGATGTTGAATAA-------------AA-ACATGATGAACAACATATCATTTATGTAAACTAC------CAAAAAGGTTTCATCTTAT-ATCA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----AAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATC---AAA----AG-A---------A-AATTTAA----TAATTTGTAAAT--GCGAATAAA----TTAAG-AAAAATAAGCATTAATGTA-AGGCAATATGCGGTTGCATATCACGTGTCACGG---AAACGAGAA-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TTATACTCGTgaaaaacta
gi|111371 : GAGTGATGTTAACATATTAAT---AGAAAC-TGGCGTAACTA-CG-GAGAATTAAGCATTTATTCACGGGCATTTCTTCAC-AAAA--CG-----GCGAAACATA-CCCAC-AACCATTTCATACAGTATTGCAGTAGCCAGTGAAATCGGTGATTAAACAACATGAA-G------------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAAAAG----------------CGTTATTAACTTAAGTA---AAATA--G-AAAAATTAGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATATCATTTATGTAAATTAC------AAACAAAGCTTCATCGTTT-ATCA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGAC----CGGTGGGTCGTGTTCTTAAAAAAATC---AAA----AGAA---------A-AACTGAA----TAATTTGTAAAT--GCAAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGTGGTTGCATATCACGCGTCACGG---AAACGAGAA-TGAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TTA-ACTCGT
gi|111372 : AGTA---AAATA--A-AATTATTAAATATTGAATAACA-TAAATAT-AAAAAACATGATGAACAACGTATCATTTATGTATTTTAC------AAAATAGGCTTCATCTTTA-ATTA-A--GAATAT-ATACTACACAAATAAATAA--------GT-TA--TTCTT----AAAACAATGACTGATTGGTGGGTTATGTTCTT-ACAAAATC---AAA----AG-T---------A-AAGATAA----TATTTTCTAAAC--G-GAATTAATTTTTTAA--AAAAAT---CATTAATTTA-AGGCAATATGCAGTTGCAAATCACGCGTCACGG---AAACGAAAA-TAGGCCG--CGGCGC---TAAT-ATCAATCACTAGTT----CTAAGTCAGTT-AAAT-AC-T---TCATATTCGT
gi|111373 : TAAATTACTTTTTTAAAAAAGTCTT-----TTC-ACTA-CGCAAATGTTAGACTACTCAAAT---TAA--------AA-TAAATATTTTATTGAAACATTAACCGATTAGAGGTTCAAACTCTT-A-AAAATC---CAT----AT-ACTAGTATACA-TGTTT------TACTTTCTAAATAAGC--ATAAC----TTTAT-AAAAGTAAGCATCAATTTA-GAG-AGTATACAGTTGTAACTCA-GC----TGGATTAAACAAG---TTA-CCGAATGAAATTCAT--TCATCAATTACTCTTTAAAAC-AACTCAATT-GAAT-AC-T---
gi|111374 : tagcatttctAC------AAAAT------CACCTTTA-ATTA-A--GAATAT-ATACTACACAAATAAACAA--------GT-TA--TTCTT----GAAACAATGAATGATCGGTGGGTTATGTTCTT-ACAAAATC---AAA----AG-T---------A-AAGATAA----TATTTTCTAAAC--GG-AATTAA----TTAA--AAAAATAAGCATTAATTTA-AGGCAATATGCAGTTTCAAATCACGCGTCAAGG---AAACGAAAA-TAGACCG--CGGCGCTT---AT-ATCAATCACTAATT----CTAAGTTAGTTAAAAC-AC-T---TCATATTCGT
gi|111375 : TCTTTTCACTACAC-AAATGTTAGACTACTCAAAT---TAA--------ATGTA--TTATT----GAAACATTAACCGATTAGAGGTTCAAACTCTT-A-AAAATC---CAT----AT-ACTAGTATACA-TGTTT------TACTTTTTAAATAAGC--ATAAC----TTTAT-AAAAGTAAGCATCAATTTAGAGG--GTATACAGTTGTAAATCA---GT--TGG---ATACGACAAGTTA-CCG--
gi|111376 : TCTTTTCACTACAC-AAATGTTAAACTATTCAAAT---TAAAAAAAAATGT-T---TA-TT----GAAACATTAACCGATTAGAGGTTCAAACTCTT-A-AAAATC---CAT----AT-ACCAGTATACA-TATTT------TACTTTCTAAATAAGC--ATAAC----TTTAT-AAAAGTAAGCATCAATTTA-GGG-AGTATACAGTTGTAAATCA---GT--TGG---ATACGACAAGTTA-CCGAATGAAATTCAT--TCATCAGTTACTCTT------TAAAACAACT-AATT-Gaatgaaatccattcaccaattgctctttaaaacaactcgattgaatactt
gi|111377 : TCTTTTCACTACAC-AAATGTTAGACTACTCAAAC---TAAAAAAAT--GT-TT--TA-TT----GAAACATTAACCGATAAGAGGTTCAAACTCTT-AAAAATTC---ATATACTAGTATACAT----A-GATTT------TACTTTCTAAATAAGC--ATAAC----TTTAT-AAAAGTAAGCCTCAATTTA-GAG-AGTATACAGTTGTAAATCAaatact
gi|111378 : --AAACAC-AA--TTCACAAAT---CAA--------GT-TA--CACTT----GAAACAATGACCGATCGGTGGGCCGTATTCTT-ACAAAATC---AAA----AG-A---------A-AATTTAA----TAATTTGTAAAT--GCGAATAAA----TTAAG-AAAAATAAGCATTAATCTA-AGGCAATATGCGGTTGCATATCACGCGTCACGG---AAACGAGAG-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TGTTACTTGTgttggttatgacaagttacagaatgaaattcattcatcaattactctttaaaacaactcaattgaatactaagtcat
gi|111363 : --AAACAC-AA--TTCACAAAT---CAA--------GT-TA--CACTT----GAAACAATGACCGATCG
gi|111379 : gagtgttattttactcttaaaacatacacttatgactacagaaaatagacgtgttattaaccgctataatagaagaaaaatcaccaacagtgaatcacggctTT----GAAACATTAACCGATTACAGGTTCAAACTCTT-A-AAAATCCATAAA----AT-A---------G-TATTCATGTTTTACTTTCTAAATAAGC--ATAAC----TTAAT-AAAAGTAAGCATCAATTTATAG--AGTATACAGTTGTAAATCA---GT--TGG---ATACAAG---TTA-CCGAATGAAATTCAT--TCATCGATTACTATTTAAAAC-AACTCAATT-GAAT-AC-TAAGTCAT
Alignments
lowQualScore : 1111 111111111 1111111111 2222222222222222 11111111 111111 1111 1 222 11111111 444444444444444 1 1111
lowQualScore : 1 88888 3 0 666 99999 666 3 3 44 44 44 3 0000 666 3 1 3 55 3 555555555 3 3 0 2 7777777777 1 1 6666666666666666 1 666 33333333 3 0 4 1 44 4 666 000000 0 1 3333 1 1 333 77777777 2 33 22 5555 2 5 444 5555 000000000000000 2 888888 1 0 0 5555 99 5 4 0 3 2 444 5 4 77 2 3 6 3333 3 3 3 555
lowQualScore : . ..... . . ... ..... ... . . .. .. .. . .... ... . . . .. . ......... . . . . .......... . . ................ . ... ........ . . . . .. . ... ...... . . .... . . ... ........ . .. .. .... . . ... .... ............... . ...... . . . .... .. . . . . . ... . . .. . . . .... . . . ...
lowQualScore : 0 33333 3 5 444 11111 555 6 6 66 66 66 3 4444 444 6 8 3 00 6 555555555 6 6 5 5 5555555555 0 0 5555555555555555 0 444 22222222 6 5 0 4 77 0 444 555555 5 0 8888 4 0 333 33333333 7 77 55 3333 5 6 444 3333 444444444444444 5 888888 0 4 3 3333 11 0 1 6 3 7 777 3 4 33 2 4 2 1111 1 1 1 444
consensus : GAGTGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTGACCGCTATAAGAGA---AGGAAAATCACCAACAGT-----GAATCACGGTTAAACACAA-TTTTT-ACT--AA--ATTAATAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCGAAA---GC-TGAACTATTACCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTCCTTCGC-AAAA--CG-----GCGAAAAATA-CCCAC-AACCATTTCATACAGTACTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG----------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTTAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTTATGTAAATTAC------AAAATAGGCTTCATCTTTNATTA-A--AAATAT-ANACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATCGGTGGGTCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TANTTTCTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGCGGTTGCAAATCACGCGTCACGG---AAACGAGAA-TTAGCCG--CGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-AC-T---TCATACTCGT
Reference ( family-769 ) : GAGTGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTGACCGCTATAAGAGA---AGGAAAATCACCAACAGT-----GAATCACGGTTAAACACAA-TTTTT-ACT--AA--ATTAATAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCGAAA---GC-TGAACTATTACCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTCCTTCGC-AAAA--CG-----GCGAAAAATA-CCCAC-AACCATTTCATACAGTACTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG----------ATAAACNTATAATTAGATTANTAAAGTATAAAAATAAAAGAAAACAG----------------CGTNATTAACTTTAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTTATGTAAATTAC------AAAATAGGCTTCATCTTTNATTA-A--AAATAT-ANACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATCGGTGGGTCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TANTTTCTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGCGGTTGCAAATCACGCGTCACGG---AAACGAGAA-TTAGCCG--CGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-AC-T---TCATACTCGT
gi|111358 : GAATGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTAACCGCTATAATAGA---AGGAAAATCACCAACAGT-----GAATCACGGTTAAACACAAATTTTT-GCT--AA--ATTTATAAC--TGTTATT-TTAGTGAAACATAC----ACCGACCGAAA---GC-TGAACTATAACCTGATCGAGTGATGTTAACATATTAAAAGAAAC-TGGCGTAACTATGG--AGAATTAAGCATTTACTCACGGGCATTTCTTCGC-AAAT--CG-----GCGAAAAATA-CCCAC-AATCATTTCATACAGTATTGTAGTAGCTAGTACAATCGCTGATTAAACAACATGAATG----------ATAAACGTATAATAAGATTAGTAAAGTATAAAAATAAAAGAAAACAA----------------CGTTATTAACTTTAGTA---AAAT--------AG-AAAAATTTGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTGATGTAAATTAC------AAAATAGGCTTCATCTTTTATTA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TAATTTGTAAATGCCAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGTGGTTGCATATCACGCGTCACGG---AAACGAGAA-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TCATACTCGT
gi|111359 : GAGTGTTATTTTACTCATGAAACGTACATTTATGACAATAGAAAAT-----AG-ACGTGTTATAAACCGCTATAATAGA---AGGAAAATCAACAGCAGT-----GAATCACGGTTTAACACAA-TT----------------AATAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCCAAACCTGCCTGAACTATGACCTGATCGAGTGATGTTAACATATTAATATGAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTCCTTCGC-AAAA--CG-----GCGAAAAATA-CCCAC-AACCATTTCATACAGTATTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG----------ATAAACGTATAATTAAATTTGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTTTGTA---AAAT--------AT-AAAATTTAGATGTTGAATAACA-CAGATTT-AAAA-ACATGATGAACAACATAT---CATTTAAGTAAATTAC------AAAAAAGGCTTCATCTTTTATTA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATTGGTGGGCCGTGTTCTT-AC-AAATC---AAA----AG-----A---------A-AATTTAA----TAATTTGTAAATGCGAAAAAA----TTAAGAAAAAATAAGCA-TAATTTA-AGGCAATATGCGGTTGCATATCACGCTTCAAGG---TAACAAGAA-TTAGCCG--TGGCGCTTATGAA-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TCTTTCTCGT
gi|111360 : GAGTGTTATTTTACTCTTAAAACATACACTTATAACAATAGAAA-T-----AG-ACGTGTTATTGGCCGCTATAAGAGA---AAGAAAATTACCAACAGT-----GAATCAC----AAACACAA-TTTTT-ACT--AT--ATTAATAAC--TGTTATT-TAAGTGAAACATAC----ATCGATCGAAA---GC-TAAACTATAACCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTTCTCACGGGCATTCCTTCGC-AAAAAACG-----GCGAAAAATA-CCCAC-AACCATGTCATGCTGTACTGTAATAGTTATTGAAATCGCTGATTAATCAACCTGAATG----------ATAAACTTATAATTAGATTATTAAAGTATAAAAATAAAAGAAGACAG----------------CGTAATTAACTTTAGTA---AAAT--------AA-AATAATTAAATATTGAATAACA-TGAATATAAAAA-ACATGATGAACAACATAT---CACTTACGTAAATTAC------AAAATAGGCTTCATCTTTAATTA-A--GAATAT-ATACTACACAAATAAATAA--------GT-TA--TTCTT----GAAACAATGACTGATCGGTGGGTTATGTTCTT-ACAAAATC---AAA----AG-----T---------G-AAGATAA----TATTTTCTAAACG-GAATTAA----TTA---AAAAATAAGCATTAATTTA-AGGCAATATGCTGTTGCAAATCACGCGTCACGG---AAACGAAAA-AAGGCCG--CGGCGCTT---AT-ATCAATCACTTATT----CTAAGTCAATT-AAAT-AC-T---TCATATTCGT
gi|111361 : GAGTGTTATTT-ACTCTTAAAACGTACACTTATGACAATAGAAAATTAATAAC-AC-TGTTATT
gi|111362 : GAGTGTTATTTTACTCTTAAAACATACACTTATTACAATAGAAAAT-----AG-ACGTGTTATTGGCCGCTATAAGAGATAAAAGAAAATCACCAACAGT-----GAATCA----TAAACACAG-TTTTT-ACT--AA--ATTAACAAC--TGTTATT-TTAGTGAAACACGC----ATCGATCGAAA---GC-TAAACTATTATCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTTCTCACGGGCATTCCTTCGCAAAAA--CG-----GCGAAAAATA-CCCAC-AACCATGTCATGCAGTACTGTAATAGCTAGTGAAATCGCTGTTTAAACAACATGAATG----------ATAAACTTATAATTAGATTATTAAAGTATAAAAAT-----ATAACAG----------------CGTTATTAACTTTAGTG---AAAT--------AA-AAATATTAAATATTGAATAACA-TAAATAT-AAAA-ACATGATGAACAACATATCAGCATTTA
gi|111363 : GAGTGTTATTTTACTCTTAAAACATACACTTATGACTACAGAAAAT-----AG-ACGTGTTATTAACCGCTATAATAGA---AGAAAAATCACCAACAGT-----GAATCACGGCTAAACACAA---TTC-AC---AA--ATCAA-------GTTACA-CT--TGAAACA-ATG---ACCGATCG
gi|111364 : GGGTGTTATTTTACTCTTAAAACATACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTAACCGCTATAAGAGA---AGGAAAATCCCCAACAGA-----GAATCACGTTTAAACACAA-TTTTA-TTT--AA--ATTGGTAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCGAAA---GC-TAAACTATTACCTGATCGAGTGATGTTAACATAGCCATAGAAAC-TGGTGTAACTACGG--AGAAGTAAGAATTTATACACGGGTATTCCTT------------------CGAAAAATA-ATCGCAAACCATTGTATA
gi|111365 : GGGTGTTATTTTACTATTAAAACGTACACTTATAACAATAGAAAAT-----AG-ACGTGT--TTGACCGCTATAAGAGA---AGGAAAATCACCAACAGTATCTGAAATCA-AATTAAACACAT-CTTTT-ACT--AA--ATTAATAAC---G-TATA-ATAGTGAAACATACACCTACCTACCGAAA---GC-TGAGCTATTACCTGATTAGGTGATGTTAACATATTCATAGGGGCGTAGCGTGAC
gi|111366 : AGTGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAC-----AG-ACGTGTTATTAACCGCTATAAGAGA---AGGAAAATCACCAACAGT-----GAAATGCGGTTAAACACAA-TTTTTTACT--AG--ATTAATAAC--TTTTATT-TCAGTGAAACATAC----ACCGATCGAAA---GC-TGAACTATTATCTGATCGAGTGATGTTTACATAGTAATAGAAAC-TAGCGTAACTACGG--AGAATTAAGCATTTATTAACGGGCATTCCTTCGC-AAAAA-CG-----GCGAAAATTA-CCCAC-AACCATTTCGTACAGTACTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG----------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTAAGTA---AAAT--------AGAAAAAAATAGATGTTAAATAACA-TAGATAT--TAA-ACATGATGAACAACATAT---CATTTATGTCAATTAC------AAAATAGGCTTCATCTTTTATTA-A--AAATGT-AAACTACGCAAAT---CAA--------GT-TA--TAATT----GAAACAATGACCGATCGGTGGGCCGTGTTCTA-ACAAAATC---AAA----AG-----A---------A-AATTTTA----TTATTTGTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGCGGTTGCAAATCACGCGTCACGG---AAACAAGAA-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTACTT----CTAAGTCAGTT-AAATAAC-T---TTATACTCGT
gi|111367 : AGTGTTGTTTGACTCTTAAAACATACATTTATGACAAAAGAAAAT-----AA-CCGTGTTATTGACCGCTATAATGGT---AGGGAAATGACCCACAGT-----GAATCACAGTTAAACATGA-TTTTT-ACT--TA--ATGTAGAGC--TATTATT-TTAGTGATACATAC----GCTGATCGGAA---GC-TAAACTAATACCTGATCGAATGATATTAACATATCTATAGAGAC-AGGCATAAC---GG--GTAATTGCGCATTTATCAACGAGCATTCCTTCGC-AAAA--AAAAAAAGCGAAAGATTTCCCAC-AACCATTTCACACAGTATTATTATAGTCATTGAAATTGCTGTTTATACAACATGAATG----------ATAAAGTTATCATTAGATTATTTAAGTATAAAAATAGAAGAAAACAATTACAATAAACAATAACGTAATTAACTTTAGTA---AATT--------AA-ATGTATTAAGTATTGAATAATACTATTTAT-CAAA-ACATGAGGAACAAAATAT---CATTCATGTAAATTAC------AAAATAGGCTTCATCTTTAGTTA-A--GAATAT-ATACTATACAAATAAACAA--------GT-TA--TTCTT----AAAACAATAACAGATCAGTGGGCCATGTTCGT-ACAAAATC---AAA----TG-----T---------ATAGTTTAA-----ATTTTCTAAATGCGAATAAA----TTAAG-AAAAATAAACATTAATTTA-TGGCAATTTGCAGTTGTAAATCACGCGTTACGG---AAACGAAAA-CTGGACA--CGCTCCTAATAAA-ATCAATCACTATTT----CTAAGTCAATT-AAAT-ACAG---TAATATTCGT
gi|111368 : GTGTTATTTTACTCTTAAAACATACACTTATTAATATAGAACAT-----AG-ACGTGTTATTGGCCGCTATAAGAGA---AAGAAAATCACCAACAGT-----GAATCAC----AAACACAA-TTTTT-ACT--AA--ATTAATAAC--TGTTATT-TTAGTGAAACATAC----ATCTATCGAAA---GT-TAAACTATTACCTGATCGAATGATGTTAACATATTCATAGAAAC-TGGCGTAACTACTG--AGAATTAAGCATTTTCTCATGGGCATTCCTTCGC-AAAAAACG-----GCGACAAATA-CCCTC-AATCATCTCAGGCAGTACTGTAATAGCTATTGAAATCGCTGATTTAACAACATAAATG----------ATAAACTTATAATTAGATTATTTAAGTATAGAAATAAAAGAAGACAG----------------CGTAATTAACTTTAGTA---AAAT--------AA-AAATATTAAATATTGAATAACA-TAAATAT-AAAA-ACATAATGAACAACATAT---CATTTATGTAAATTAC------AAAATAGGCTTCATCTTTAACTA-A--GAATAT-ATACTACACAAATAAATAA--------AT-TA--TTCTT----GAAACAATGACTGATCGGTGAGTTATGTTTTT-ACAAAATC---AAA----AG-----T---------A-AAGATAA----TATTTTCTAAACG-GAATTAA----TTAAA-AAA---AAGCATAAATTTA-AGGCAAAATGCAGTTGCAAATCACGTGTCACGG---AAACGAAAA-TAGGCCG--CAGTGC---TAAT-ATCAATCAATAATT----CTATGTCATTT-AAAT-AC-T---TCATATTCGT
gi|111369 : TTAT--CGATATAACA------AGCACGTGCTATTCACGGTCATGAATAA---AGGCGAATAGGCAACAGT-----GATTCGCAGCGAAACACAT-TTTTT-ACTCAAATGATTCATAAC--CGGTATTGTTAGCGATACATGC----ACAGTTTGGAA---GC-TGAAC-ACTAAATGATGTAATGTTGTTAACATGAACATACAAAC-TGACGTCGCCACTGTAAGA--TACGCATTGATTTATAAGCACTCATTTAC-A--------------TAAAAA-----CAC-AA---TTTCATGTAGT------GTTGCTA------TCACTCTTTAAACAATATGAATGCATTTTACTGATATA-ATATAATACGATTAATTGAGAATGAGGATAAAAGCAAACAG----------------TATAATTAACTTCTGCATCGAAATAATGAACAAG-AAAAACTA
gi|111370 : --AA--ATTAATAACACTGTTATT-TAAGTGACACATAC----ACTGAGCGAGA---GC-TGAACTATTACCTAATCGAG------------------AGCAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTTCTTCGT-AAAA--CG-----GCGAAAAATA-CCCAC-A-CCATTTCATACACTATTATAGTAGCCAGTTAAATCGGTGATTAAACAACATGAATG----------ATAAACGTATTATTAGATTAGTAAAGTATAACAATAAAAGAAAACAG----------------CTTTATTAACTTTAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAA-------------AA-ACATGATGAACAACATAT---CATTTATGTAAACTAC------CAAAAAGGTTTCATCTTATATCA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----AAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TAATTTGTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATGTA-AGGCAATATGCGGTTGCATATCACGTGTCACGG---AAACGAGAA-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TTATACTCGT
gi|111371 : GAGTGATGTTAACATATTAATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTTCTTCAC-AAAA--CG-----GCGAAACATA-CCCAC-AACCATTTCATACAGTATTGCAGTAGCCAGTGAAATCGGTGATTAAACAACATGAA-G----------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAAAAG----------------CGTTATTAACTTAAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTTATGTAAATTAC------AAACAAAGCTTCATCGTTTATCA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGAC----CGGTGGGTCGTGTTCTTAAAAAAATC---AAA----AGA----A---------A-AACTGAA----TAATTTGTAAATGCAAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGTGGTTGCATATCACGCGTCACGG---AAACGAGAA-TGAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TTA-ACTCGT
gi|111372 : AGTA---AAAT--------AA-AATTATTAAATATTGAATAACA-TAAATAT-AAAAAACATGATGAACAACGTAT---CATTTATGTATTTTAC------AAAATAGGCTTCATCTTTAATTA-A--GAATAT-ATACTACACAAATAAATAA--------GT-TA--TTCTT----AAAACAATGACTGATTGGTGGGTTATGTTCTT-ACAAAATC---AAA----AG-----T---------A-AAGATAA----TATTTTCTAAACG-GAATTAATTTTTTAA--AAAAAT---CATTAATTTA-AGGCAATATGCAGTTGCAAATCACGCGTCACGG---AAACGAAAA-TAGGCCG--CGGCGC---TAAT-ATCAATCACTAGTT----CTAAGTCAGTT-AAAT-AC-T---TCATATTCGT
gi|111373 : TAG---CATTTCT-TAAATTACTTTTTTAAAAAAGTCTT-----TTCACTA-CGCAAATGTTAGACTACTCAAAT---TAA--------AA-TAAATATTTTATTGAAACATTAACCGATTAGAGGTTCAAACTCTT-A-AAAATC---CAT----AT-----ACTAGTATACA-TGTTT------TACTTTCTAAATAAGCATAAC----TTTAT-AAAAGTAAGCATCAATTTA-GAG-AGTATACAGTTGTAACTCA-GC----TGGATTAAACAAG---TTA-CCGAATGAAATTCAT--TCATCAATTACTCTTTAAAAC-AACTCAATT-GAAT-AC-T---
gi|111374 : AC------AAAAT------CACCTTTAATTA-A--GAATAT-ATACTACACAAATAAACAA--------GT-TA--TTCTT----GAAACAATGAATGATCGGTGGGTTATGTTCTT-ACAAAATC---AAA----AG-----T---------A-AAGATAA----TATTTTCTAAACG-GAATTAA----TTAA--AAAAATAAGCATTAATTTA-AGGCAATATGCAGTTTCAAATCACGCGTCAAGG---AAACGAAAA-TAGACCG--CGGCGCTT---AT-ATCAATCACTAATT----CTAAGTTAGTTAAAAC-AC-T---TCATATTCGT
gi|111375 : TTTCACTACAC-AAATGTTAGACTACTCAAAT---TAA--------ATGTA--TTATT----GAAACATTAACCGATTAGAGGTTCAAACTCTT-A-AAAATC---CAT----AT-----ACTAGTATACA-TGTTT------TACTTTTTAAATAAGCATAAC----TTTAT-AAAAGTAAGCATCAATTTAGAGG--GTATACAGTTGTAAATCA---GT--TGG---ATACGACAAGTTA-CCG--
gi|111376 : tctTTTCACTACAC-AAATGTTAAACTATTCAAAT---TAAAAAAAAATGT-T---TA-TT----GAAACATTAACCGATTAGAGGTTCAAACTCTT-A-AAAATC---CAT----AT-----ACCAGTATACA-TATTT------TACTTTCTAAATAAGCATAAC----TTTAT-AAAAGTAAGCATCAATTTA-GGG-AGTATACAGTTGTAAATCA---GT--TGG---ATACGACAAGTTA-CCG--aatgaaatccattcaccaattgctctttaaaacaactcgattgaatactt
gi|111377 : tctTTTCACTACAC-AAATGTTAGACTACTCAAAC---TAAAAAAAT--GT-TT--TA-TT----GAAACATTAACCGATAAGAGGTTCAAACTCTT-AAAAATTC---ATATACTAGTATACAT--------A-GATTT------TACTTTCTAAATAAGCATAAC----TTTAT-AAAAGTAAGCCTCAATTTA-GAG-AGTATACAGTTGTAAATCAaatgaaattcattcatcagttactctttaaaacaactaattgaatact
gi|111378 : tctCACAAAT---CAA--------GT-TA--CACTT----GAAACAATGACCGATCGGTGGGCCGTATTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TAATTTGTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATCTA-AGGCAATATGCGGTTGCATATCACGCGTCACGG---AAACGAGAG-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TGTTACTTGTgttggttatgacaagttacagaatgaaattcattcatcaattactctttaaaacaactcaattgaatactaagtcat
gi|111379 : aaacacaattTT----GAAACATTAACCGATTACAGGTTCAAACTCTT-A-AAAATCCATAAA----AT-----A---------G-TATTCATGTTTTACTTTCTAAATAAGCATAAC----TTAAT-AAAAGTAAGCATCAATTTATAG--AGTATACAGTTGTAAATCA---GT--TGG---ATACAAG---TTA-CCGAATGAAATTCAT--TCATCGATTACTATTTAAAAC-AACTCAATT-GAAT-AC-TAAGTCAT
Alignments
lowQualScore : 1111 111111111 222222222222 2222222222222222 11111111 111111 1111 1 222 11111111 444444444444444 1 1111
lowQualScore : 1 88888 3 0 666 99999 666 3 3 44 44 44 3 0000 666 3 1 3 55 3 555555555 3 3 0 2 000000000000 2 1 6666666666666666 1 666 33333333 3 0 4 1 44 4 666 000000 0 1 3333 1 1 333 77777777 2 33 22 5555 2 5 444 5555 000000000000000 2 888888 1 0 0 5555 99 5 4 0 3 2 444 5 4 77 2 3 6 3333 3 3 3 555
lowQualScore : . ..... . . ... ..... ... . . .. .. .. . .... ... . . . .. . ......... . . . . ............ . . ................ . ... ........ . . . . .. . ... ...... . . .... . . ... ........ . .. .. .... . . ... .... ............... . ...... . . . .... .. . . . . . ... . . .. . . . .... . . . ...
lowQualScore : 0 33333 3 5 444 11111 555 6 6 66 66 66 3 4444 444 6 8 3 00 6 555555555 6 6 5 5 555555555555 5 6 5555555555555555 4 444 22222222 6 5 0 4 77 0 444 555555 5 0 8888 4 0 333 33333333 7 77 55 3333 5 6 444 3333 444444444444444 5 888888 0 4 3 3333 11 0 1 6 3 7 777 3 4 33 2 4 2 1111 1 1 1 444
consensus : GAGTGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTGACCGCTATAAGAGA---AGGAAAATCACCAACAGT-----GAATCACGGTTAAACACAA-TTTTT-ACT--AA--ATTAATAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCGAAA---GC-TGAACTATTACCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTCCTTCGC-AAAA--CG-----GCGAAAAATA-CCCAC-AACCATTTCATACAGTACTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTTAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTTATGTAAATTAC------AAAATAGGCTTCATCTTTNATTA-A--AAATAT-ANACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATCGGTGGGTCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TANTTTCTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGCGGTTGCAAATCACGCGTCACGG---AAACGAGAA-TTAGCCG--CGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-AC-T---TCATACTCGT
Reference ( family-769 ) : GAGTGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTGACCGCTATAAGAGA---AGGAAAATCACCAACAGT-----GAATCACGGTTAAACACAA-TTTTT-ACT--AA--ATTAATAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCGAAA---GC-TGAACTATTACCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTCCTTCGC-AAAA--CG-----GCGAAAAATA-CCCAC-AACCATTTCATACAGTACTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTTAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTTATGTAAATTAC------AAAATAGGCTTCATCTTTNATTA-A--AAATAT-ANACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATCGGTGGGTCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TANTTTCTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGCGGTTGCAAATCACGCGTCACGG---AAACGAGAA-TTAGCCG--CGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-AC-T---TCATACTCGT
gi|111358 : GAATGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTAACCGCTATAATAGA---AGGAAAATCACCAACAGT-----GAATCACGGTTAAACACAAATTTTT-GCT--AA--ATTTATAAC--TGTTATT-TTAGTGAAACATAC----ACCGACCGAAA---GC-TGAACTATAACCTGATCGAGTGATGTTAACATATTAAAAGAAAC-TGGCGTAACTATGG--AGAATTAAGCATTTACTCACGGGCATTTCTTCGC-AAAT--CG-----GCGAAAAATA-CCCAC-AATCATTTCATACAGTATTGTAGTAGCTAGTACAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATAAGATTAGTAAAGTATAAAAATAAAAGAAAACAA----------------CGTTATTAACTTTAGTA---AAAT--------AG-AAAAATTTGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTGATGTAAATTAC------AAAATAGGCTTCATCTTTTATTA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TAATTTGTAAATGCCAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGTGGTTGCATATCACGCGTCACGG---AAACGAGAA-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TCATACTCGT
gi|111359 : GAGTGTTATTTTACTCATGAAACGTACATTTATGACAATAGAAAAT-----AG-ACGTGTTATAAACCGCTATAATAGA---AGGAAAATCAACAGCAGT-----GAATCACGGTTTAACACAA-TT----------------AATAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCCAAACCTGCCTGAACTATGACCTGATCGAGTGATGTTAACATATTAATATGAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTCCTTCGC-AAAA--CG-----GCGAAAAATA-CCCAC-AACCATTTCATACAGTATTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATTAAATTTGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTTTGTA---AAAT--------AT-AAAATTTAGATGTTGAATAACA-CAGATTT-AAAA-ACATGATGAACAACATAT---CATTTAAGTAAATTAC------AAAAAAGGCTTCATCTTTTATTA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATTGGTGGGCCGTGTTCTT-AC-AAATC---AAA----AG-----A---------A-AATTTAA----TAATTTGTAAATGCGAAAAAA----TTAAGAAAAAATAAGCA-TAATTTA-AGGCAATATGCGGTTGCATATCACGCTTCAAGG---TAACAAGAA-TTAGCCG--TGGCGCTTATGAA-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TCTTTCTCGT
gi|111360 : GAGTGTTATTTTACTCTTAAAACATACACTTATAACAATAGAAA-T-----AG-ACGTGTTATTGGCCGCTATAAGAGA---AAGAAAATTACCAACAGT-----GAATCAC----AAACACAA-TTTTT-ACT--AT--ATTAATAAC--TGTTATT-TAAGTGAAACATAC----ATCGATCGAAA---GC-TAAACTATAACCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTTCTCACGGGCATTCCTTCGC-AAAAAACG-----GCGAAAAATA-CCCAC-AACCATGTCATGCTGTACTGTAATAGTTATTGAAATCGCTGATTAATCAACCTGAATG------------ATAAACTTATAATTAGATTATTAAAGTATAAAAATAAAAGAAGACAG----------------CGTAATTAACTTTAGTA---AAAT--------AA-AATAATTAAATATTGAATAACA-TGAATATAAAAA-ACATGATGAACAACATAT---CACTTACGTAAATTAC------AAAATAGGCTTCATCTTTAATTA-A--GAATAT-ATACTACACAAATAAATAA--------GT-TA--TTCTT----GAAACAATGACTGATCGGTGGGTTATGTTCTT-ACAAAATC---AAA----AG-----T---------G-AAGATAA----TATTTTCTAAACG-GAATTAA----TTA---AAAAATAAGCATTAATTTA-AGGCAATATGCTGTTGCAAATCACGCGTCACGG---AAACGAAAA-AAGGCCG--CGGCGCTT---AT-ATCAATCACTTATT----CTAAGTCAATT-AAAT-AC-T---TCATATTCGT
gi|111361 : GAGTGTTATTT-ACTCTTAAAACGTACACTTATGACAATAGAAAATTAATAAC-AC-TGTTATT
gi|111362 : GAGTGTTATTTTACTCTTAAAACATACACTTATTACAATAGAAAAT-----AG-ACGTGTTATTGGCCGCTATAAGAGATAAAAGAAAATCACCAACAGT-----GAATCA----TAAACACAG-TTTTT-ACT--AA--ATTAACAAC--TGTTATT-TTAGTGAAACACGC----ATCGATCGAAA---GC-TAAACTATTATCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTTCTCACGGGCATTCCTTCGCAAAAA--CG-----GCGAAAAATA-CCCAC-AACCATGTCATGCAGTACTGTAATAGCTAGTGAAATCGCTGTTTAAACAACATGAATG------------ATAAACTTATAATTAGATTATTAAAGTATAAAAAT-----ATAACAG----------------CGTTATTAACTTTAGTG---AAAT--------AA-AAATATTAAATATTGAATAACA-TAAATAT-AAAA-ACATGATGAACAACATATCAGCATTTA
gi|111363 : GAGTGTTATTTTACTCTTAAAACATACACTTATGACTACAGAAAAT-----AG-ACGTGTTATTAACCGCTATAATAGA---AGAAAAATCACCAACAGT-----GAATCACGGCTAAACACAA---TTC-AC---AA--ATCAA-------GTTACA-CT--TGAAACA-ATG---ACCGATCG
gi|111364 : GGGTGTTATTTTACTCTTAAAACATACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTAACCGCTATAAGAGA---AGGAAAATCCCCAACAGA-----GAATCACGTTTAAACACAA-TTTTA-TTT--AA--ATTGGTAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCGAAA---GC-TAAACTATTACCTGATCGAGTGATGTTAACATAGCCATAGAAAC-TGGTGTAACTACGG--AGAAGTAAGAATTTATACACGGGTATTCCTT------------------CGAAAAATA-ATCGCAAACCATTGTATA
gi|111365 : GGGTGTTATTTTACTATTAAAACGTACACTTATAACAATAGAAAAT-----AG-ACGTGT--TTGACCGCTATAAGAGA---AGGAAAATCACCAACAGTATCTGAAATCA-AATTAAACACAT-CTTTT-ACT--AA--ATTAATAAC---G-TATA-ATAGTGAAACATACACCTACCTACCGAAA---GC-TGAGCTATTACCTGATTAGGTGATGTTAACATATTCATAGGGGCGTAGCGTGAC
gi|111366 : AGTGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAC-----AG-ACGTGTTATTAACCGCTATAAGAGA---AGGAAAATCACCAACAGT-----GAAATGCGGTTAAACACAA-TTTTTTACT--AG--ATTAATAAC--TTTTATT-TCAGTGAAACATAC----ACCGATCGAAA---GC-TGAACTATTATCTGATCGAGTGATGTTTACATAGTAATAGAAAC-TAGCGTAACTACGG--AGAATTAAGCATTTATTAACGGGCATTCCTTCGC-AAAAA-CG-----GCGAAAATTA-CCCAC-AACCATTTCGTACAGTACTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTAAGTA---AAAT--------AGAAAAAAATAGATGTTAAATAACA-TAGATAT--TAA-ACATGATGAACAACATAT---CATTTATGTCAATTAC------AAAATAGGCTTCATCTTTTATTA-A--AAATGT-AAACTACGCAAAT---CAA--------GT-TA--TAATT----GAAACAATGACCGATCGGTGGGCCGTGTTCTA-ACAAAATC---AAA----AG-----A---------A-AATTTTA----TTATTTGTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGCGGTTGCAAATCACGCGTCACGG---AAACAAGAA-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTACTT----CTAAGTCAGTT-AAATAAC-T---TTATACTCGT
gi|111367 : AGTGTTGTTTGACTCTTAAAACATACATTTATGACAAAAGAAAAT-----AA-CCGTGTTATTGACCGCTATAATGGT---AGGGAAATGACCCACAGT-----GAATCACAGTTAAACATGA-TTTTT-ACT--TA--ATGTAGAGC--TATTATT-TTAGTGATACATAC----GCTGATCGGAA---GC-TAAACTAATACCTGATCGAATGATATTAACATATCTATAGAGAC-AGGCATAAC---GG--GTAATTGCGCATTTATCAACGAGCATTCCTTCGC-AAAA--AAAAAAAGCGAAAGATTTCCCAC-AACCATTTCACACAGTATTATTATAGTCATTGAAATTGCTGTTTATACAACATGAATG------------ATAAAGTTATCATTAGATTATTTAAGTATAAAAATAGAAGAAAACAATTACAATAAACAATAACGTAATTAACTTTAGTA---AATT--------AA-ATGTATTAAGTATTGAATAATACTATTTAT-CAAA-ACATGAGGAACAAAATAT---CATTCATGTAAATTAC------AAAATAGGCTTCATCTTTAGTTA-A--GAATAT-ATACTATACAAATAAACAA--------GT-TA--TTCTT----AAAACAATAACAGATCAGTGGGCCATGTTCGT-ACAAAATC---AAA----TG-----T---------ATAGTTTAA-----ATTTTCTAAATGCGAATAAA----TTAAG-AAAAATAAACATTAATTTA-TGGCAATTTGCAGTTGTAAATCACGCGTTACGG---AAACGAAAA-CTGGACA--CGCTCCTAATAAA-ATCAATCACTATTT----CTAAGTCAATT-AAAT-ACAG---TAATATTCGT
gi|111368 : GTGTTATTTTACTCTTAAAACATACACTTATTAATATAGAACAT-----AG-ACGTGTTATTGGCCGCTATAAGAGA---AAGAAAATCACCAACAGT-----GAATCAC----AAACACAA-TTTTT-ACT--AA--ATTAATAAC--TGTTATT-TTAGTGAAACATAC----ATCTATCGAAA---GT-TAAACTATTACCTGATCGAATGATGTTAACATATTCATAGAAAC-TGGCGTAACTACTG--AGAATTAAGCATTTTCTCATGGGCATTCCTTCGC-AAAAAACG-----GCGACAAATA-CCCTC-AATCATCTCAGGCAGTACTGTAATAGCTATTGAAATCGCTGATTTAACAACATAAATG------------ATAAACTTATAATTAGATTATTTAAGTATAGAAATAAAAGAAGACAG----------------CGTAATTAACTTTAGTA---AAAT--------AA-AAATATTAAATATTGAATAACA-TAAATAT-AAAA-ACATAATGAACAACATAT---CATTTATGTAAATTAC------AAAATAGGCTTCATCTTTAACTA-A--GAATAT-ATACTACACAAATAAATAA--------AT-TA--TTCTT----GAAACAATGACTGATCGGTGAGTTATGTTTTT-ACAAAATC---AAA----AG-----T---------A-AAGATAA----TATTTTCTAAACG-GAATTAA----TTAAA-AAA---AAGCATAAATTTA-AGGCAAAATGCAGTTGCAAATCACGTGTCACGG---AAACGAAAA-TAGGCCG--CAGTGC---TAAT-ATCAATCAATAATT----CTATGTCATTT-AAAT-AC-T---TCATATTCGT
gi|111369 : TTAT--CGATATAACA------AGCACGTGCTATTCACGGTCATGAATAA---AGGCGAATAGGCAACAGT-----GATTCGCAGCGAAACACAT-TTTTT-ACTCAAATGATTCATAAC--CGGTATTGTTAGCGATACATGC----ACAGTTTGGAA---GC-TGAAC-ACTAAATGATGTAATGTTGTTAACATGAACATACAAAC-TGACGTCGCCACTGTAAGA--TACGCATTGATTTATAAGCACTCATTTAC-A--------------TAAAAA-----CAC-AA---TTTCATGTAGT------GTTGCTA------TCACTCTTTAAACAATATGAATGCATTTTACTGATATAA---TATAATACGATTAATTGAGAATGAGGATAAAAGCAAACAG----------------TATAATTAACTTCTGCATCGAAATAATGAACAAG-AAAAACTA
gi|111370 : --AA--ATTAATAACACTGTTATT-TAAGTGACACATAC----ACTGAGCGAGA---GC-TGAACTATTACCTAATCGAG------------------AGCAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTTCTTCGT-AAAA--CG-----GCGAAAAATA-CCCAC-A-CCATTTCATACACTATTATAGTAGCCAGTTAAATCGGTGATTAAACAACATGAATG------------ATAAACGTATTATTAGATTAGTAAAGTATAACAATAAAAGAAAACAG----------------CTTTATTAACTTTAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAA-------------AA-ACATGATGAACAACATAT---CATTTATGTAAACTAC------CAAAAAGGTTTCATCTTATATCA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----AAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TAATTTGTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATGTA-AGGCAATATGCGGTTGCATATCACGTGTCACGG---AAACGAGAA-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TTATACTCGT
gi|111371 : GAGTGATGTTAACATATTAATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTTCTTCAC-AAAA--CG-----GCGAAACATA-CCCAC-AACCATTTCATACAGTATTGCAGTAGCCAGTGAAATCGGTGATTAAACAACATGAA-G------------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAAAAG----------------CGTTATTAACTTAAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTTATGTAAATTAC------AAACAAAGCTTCATCGTTTATCA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGAC----CGGTGGGTCGTGTTCTTAAAAAAATC---AAA----AGA----A---------A-AACTGAA----TAATTTGTAAATGCAAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGTGGTTGCATATCACGCGTCACGG---AAACGAGAA-TGAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TTA-ACTCGT
gi|111372 : AGTA---AAAT--------AA-AATTATTAAATATTGAATAACA-TAAATAT-AAAAAACATGATGAACAACGTAT---CATTTATGTATTTTAC------AAAATAGGCTTCATCTTTAATTA-A--GAATAT-ATACTACACAAATAAATAA--------GT-TA--TTCTT----AAAACAATGACTGATTGGTGGGTTATGTTCTT-ACAAAATC---AAA----AG-----T---------A-AAGATAA----TATTTTCTAAACG-GAATTAATTTTTTAA--AAAAAT---CATTAATTTA-AGGCAATATGCAGTTGCAAATCACGCGTCACGG---AAACGAAAA-TAGGCCG--CGGCGC---TAAT-ATCAATCACTAGTT----CTAAGTCAGTT-AAAT-AC-T---TCATATTCGT
gi|111373 : TAG---CATTTCT-TAAATTACTTTTTTAAAAAAGTCTT-----TTCACTA-CGCAAATGTTAGACTACTCAAAT---TAA--------AA-TAAATATTTTATTGAAACATTAACCGATTAGAGGTTCAAACTCTT-A-AAAATC---CAT----AT-----ACTAGTATACA-TGTTT------TACTTTCTAAATAAGCATAAC----TTTAT-AAAAGTAAGCATCAATTTA-GAG-AGTATACAGTTGTAACTCA-GC----TGGATTAAACAAG---TTA-CCGAATGAAATTCAT--TCATCAATTACTCTTTAAAAC-AACTCAATT-GAAT-AC-T---
gi|111374 : AC------AAAAT------CACCTTTAATTA-A--GAATAT-ATACTACACAAATAAACAA--------GT-TA--TTCTT----GAAACAATGAATGATCGGTGGGTTATGTTCTT-ACAAAATC---AAA----AG-----T---------A-AAGATAA----TATTTTCTAAACG-GAATTAA----TTAA--AAAAATAAGCATTAATTTA-AGGCAATATGCAGTTTCAAATCACGCGTCAAGG---AAACGAAAA-TAGACCG--CGGCGCTT---AT-ATCAATCACTAATT----CTAAGTTAGTTAAAAC-AC-T---TCATATTCGT
gi|111375 : TTTCACTACAC-AAATGTTAGACTACTCAAAT---TAA--------ATGTA--TTATT----GAAACATTAACCGATTAGAGGTTCAAACTCTT-A-AAAATC---CAT----AT-----ACTAGTATACA-TGTTT------TACTTTTTAAATAAGCATAAC----TTTAT-AAAAGTAAGCATCAATTTAGAGG--GTATACAGTTGTAAATCA---GT--TGG---ATACGACAAGTTA-CCG--
gi|111376 : tctTTTCACTACAC-AAATGTTAAACTATTCAAAT---TAAAAAAAAATGT-T---TA-TT----GAAACATTAACCGATTAGAGGTTCAAACTCTT-A-AAAATC---CAT----AT-----ACCAGTATACA-TATTT------TACTTTCTAAATAAGCATAAC----TTTAT-AAAAGTAAGCATCAATTTA-GGG-AGTATACAGTTGTAAATCA---GT--TGG---ATACGACAAGTTA-CCG--aatgaaatccattcaccaattgctctttaaaacaactcgattgaatactt
gi|111377 : tctTTTCACTACAC-AAATGTTAGACTACTCAAAC---TAAAAAAAT--GT-TT--TA-TT----GAAACATTAACCGATAAGAGGTTCAAACTCTT-AAAAATTC---ATATACTAGTATACAT--------A-GATTT------TACTTTCTAAATAAGCATAAC----TTTAT-AAAAGTAAGCCTCAATTTA-GAG-AGTATACAGTTGTAAATCAaatgaaattcattcatcagttactctttaaaacaactaattgaatact
gi|111378 : tctCACAAAT---CAA--------GT-TA--CACTT----GAAACAATGACCGATCGGTGGGCCGTATTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TAATTTGTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATCTA-AGGCAATATGCGGTTGCATATCACGCGTCACGG---AAACGAGAG-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TGTTACTTGTgttggttatgacaagttacagaatgaaattcattcatcaattactctttaaaacaactcaattgaatactaagtcat
gi|111379 : aaacacaattTT----GAAACATTAACCGATTACAGGTTCAAACTCTT-A-AAAATCCATAAA----AT-----A---------G-TATTCATGTTTTACTTTCTAAATAAGCATAAC----TTAAT-AAAAGTAAGCATCAATTTATAG--AGTATACAGTTGTAAATCA---GT--TGG---ATACAAG---TTA-CCGAATGAAATTCAT--TCATCGATTACTATTTAAAAC-AACTCAATT-GAAT-AC-TAAGTCAT
Alignments
lowQualScore : 1111 111111111 222222222222 2222222222222222 11111111 111111 1111 1 222 11111111 444444444444444 1 1111
lowQualScore : 1 88888 3 0 666 99999 666 3 3 44 44 44 3 0000 666 3 1 3 55 3 555555555 3 3 0 2 000000000000 2 1 6666666666666666 1 666 33333333 3 0 4 1 44 4 666 000000 0 1 3333 1 1 333 77777777 2 33 22 5555 2 5 444 5555 000000000000000 2 888888 1 0 0 5555 99 5 4 0 3 2 444 5 4 77 2 3 6 3333 3 3 3 555
lowQualScore : . ..... . . ... ..... ... . . .. .. .. . .... ... . . . .. . ......... . . . . ............ . . ................ . ... ........ . . . . .. . ... ...... . . .... . . ... ........ . .. .. .... . . ... .... ............... . ...... . . . .... .. . . . . . ... . . .. . . . .... . . . ...
lowQualScore : 0 33333 3 5 444 11111 555 6 6 66 66 66 3 4444 444 6 8 3 00 6 555555555 6 6 5 5 555555555555 5 6 5555555555555555 4 444 22222222 6 5 0 4 77 0 444 555555 5 0 8888 4 0 333 33333333 7 77 55 3333 5 6 444 3333 444444444444444 5 888888 0 4 3 3333 11 0 1 6 3 7 777 3 4 33 2 4 2 1111 1 1 1 444
consensus : GAGTGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTGACCGCTATAAGAGA---AGGAAAATCACCAACAGT-----GAATCACGGTTAAACACAA-TTTTT-ACT--AA--ATTAATAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCGAAA---GC-TGAACTATTACCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTCCTTCGC-AAAA--CG-----GCGAAAAATA-CCCAC-AACCATTTCATACAGTACTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTTAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTTATGTAAATTAC------AAAATAGGCTTCATCTTTNATTA-A--AAATAT-ANACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATCGGTGGGTCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TANTTTCTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGCGGTTGCAAATCACGCGTCACGG---AAACGAGAA-TTAGCCG--CGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-AC-T---TCATACTCGT
Reference ( family-769 ) : GAGTGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTGACCGCTATAAGAGA---AGGAAAATCACCAACAGT-----GAATCACGGTTAAACACAA-TTTTT-ACT--AA--ATTAATAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCGAAA---GC-TGAACTATTACCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTCCTTCGC-AAAA--CG-----GCGAAAAATA-CCCAC-AACCATTTCATACAGTACTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTTAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTTATGTAAATTAC------AAAATAGGCTTCATCTTTNATTA-A--AAATAT-ANACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATCGGTGGGTCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TANTTTCTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGCGGTTGCAAATCACGCGTCACGG---AAACGAGAA-TTAGCCG--CGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-AC-T---TCATACTCGT
gi|111358 : GAATGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTAACCGCTATAATAGA---AGGAAAATCACCAACAGT-----GAATCACGGTTAAACACAAATTTTT-GCT--AA--ATTTATAAC--TGTTATT-TTAGTGAAACATAC----ACCGACCGAAA---GC-TGAACTATAACCTGATCGAGTGATGTTAACATATTAAAAGAAAC-TGGCGTAACTATGG--AGAATTAAGCATTTACTCACGGGCATTTCTTCGC-AAAT--CG-----GCGAAAAATA-CCCAC-AATCATTTCATACAGTATTGTAGTAGCTAGTACAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATAAGATTAGTAAAGTATAAAAATAAAAGAAAACAA----------------CGTTATTAACTTTAGTA---AAAT--------AG-AAAAATTTGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTGATGTAAATTAC------AAAATAGGCTTCATCTTTTATTA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TAATTTGTAAATGCCAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGTGGTTGCATATCACGCGTCACGG---AAACGAGAA-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TCATACTCGT
gi|111359 : GAGTGTTATTTTACTCATGAAACGTACATTTATGACAATAGAAAAT-----AG-ACGTGTTATAAACCGCTATAATAGA---AGGAAAATCAACAGCAGT-----GAATCACGGTTTAACACAA-TT----------------AATAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCCAAACCTGCCTGAACTATGACCTGATCGAGTGATGTTAACATATTAATATGAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTCCTTCGC-AAAA--CG-----GCGAAAAATA-CCCAC-AACCATTTCATACAGTATTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATTAAATTTGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTTTGTA---AAAT--------AT-AAAATTTAGATGTTGAATAACA-CAGATTT-AAAA-ACATGATGAACAACATAT---CATTTAAGTAAATTAC------AAAAAAGGCTTCATCTTTTATTA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATTGGTGGGCCGTGTTCTT-AC-AAATC---AAA----AG-----A---------A-AATTTAA----TAATTTGTAAATGCGAAAAAA----TTAAGAAAAAATAAGCA-TAATTTA-AGGCAATATGCGGTTGCATATCACGCTTCAAGG---TAACAAGAA-TTAGCCG--TGGCGCTTATGAA-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TCTTTCTCGT
gi|111360 : GAGTGTTATTTTACTCTTAAAACATACACTTATAACAATAGAAA-T-----AG-ACGTGTTATTGGCCGCTATAAGAGA---AAGAAAATTACCAACAGT-----GAATCAC----AAACACAA-TTTTT-ACT--AT--ATTAATAAC--TGTTATT-TAAGTGAAACATAC----ATCGATCGAAA---GC-TAAACTATAACCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTTCTCACGGGCATTCCTTCGC-AAAAAACG-----GCGAAAAATA-CCCAC-AACCATGTCATGCTGTACTGTAATAGTTATTGAAATCGCTGATTAATCAACCTGAATG------------ATAAACTTATAATTAGATTATTAAAGTATAAAAATAAAAGAAGACAG----------------CGTAATTAACTTTAGTA---AAAT--------AA-AATAATTAAATATTGAATAACA-TGAATATAAAAA-ACATGATGAACAACATAT---CACTTACGTAAATTAC------AAAATAGGCTTCATCTTTAATTA-A--GAATAT-ATACTACACAAATAAATAA--------GT-TA--TTCTT----GAAACAATGACTGATCGGTGGGTTATGTTCTT-ACAAAATC---AAA----AG-----T---------G-AAGATAA----TATTTTCTAAACG-GAATTAA----TTA---AAAAATAAGCATTAATTTA-AGGCAATATGCTGTTGCAAATCACGCGTCACGG---AAACGAAAA-AAGGCCG--CGGCGCTT---AT-ATCAATCACTTATT----CTAAGTCAATT-AAAT-AC-T---TCATATTCGT
gi|111361 : GAGTGTTATTT-ACTCTTAAAACGTACACTTATGACAATAGAAAATTAATAAC-AC-TGTTATT
gi|111362 : GAGTGTTATTTTACTCTTAAAACATACACTTATTACAATAGAAAAT-----AG-ACGTGTTATTGGCCGCTATAAGAGATAAAAGAAAATCACCAACAGT-----GAATCA----TAAACACAG-TTTTT-ACT--AA--ATTAACAAC--TGTTATT-TTAGTGAAACACGC----ATCGATCGAAA---GC-TAAACTATTATCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTTCTCACGGGCATTCCTTCGCAAAAA--CG-----GCGAAAAATA-CCCAC-AACCATGTCATGCAGTACTGTAATAGCTAGTGAAATCGCTGTTTAAACAACATGAATG------------ATAAACTTATAATTAGATTATTAAAGTATAAAAAT-----ATAACAG----------------CGTTATTAACTTTAGTG---AAAT--------AA-AAATATTAAATATTGAATAACA-TAAATAT-AAAA-ACATGATGAACAACATATCAGCATTTA
gi|111363 : GAGTGTTATTTTACTCTTAAAACATACACTTATGACTACAGAAAAT-----AG-ACGTGTTATTAACCGCTATAATAGA---AGAAAAATCACCAACAGT-----GAATCACGGCTAAACACAA---TTC-AC---AA--ATCAA-------GTTACA-CT--TGAAACA-ATG---ACCGATCG
gi|111364 : GGGTGTTATTTTACTCTTAAAACATACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTAACCGCTATAAGAGA---AGGAAAATCCCCAACAGA-----GAATCACGTTTAAACACAA-TTTTA-TTT--AA--ATTGGTAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCGAAA---GC-TAAACTATTACCTGATCGAGTGATGTTAACATAGCCATAGAAAC-TGGTGTAACTACGG--AGAAGTAAGAATTTATACACGGGTATTCCTT------------------CGAAAAATA-ATCGCAAACCATTGTATA
gi|111365 : GGGTGTTATTTTACTATTAAAACGTACACTTATAACAATAGAAAAT-----AG-ACGTGT--TTGACCGCTATAAGAGA---AGGAAAATCACCAACAGTATCTGAAATCA-AATTAAACACAT-CTTTT-ACT--AA--ATTAATAAC---G-TATA-ATAGTGAAACATACACCTACCTACCGAAA---GC-TGAGCTATTACCTGATTAGGTGATGTTAACATATTCATAGGGGCGTAGCGTGAC
gi|111366 : AGTGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAC-----AG-ACGTGTTATTAACCGCTATAAGAGA---AGGAAAATCACCAACAGT-----GAAATGCGGTTAAACACAA-TTTTTTACT--AG--ATTAATAAC--TTTTATT-TCAGTGAAACATAC----ACCGATCGAAA---GC-TGAACTATTATCTGATCGAGTGATGTTTACATAGTAATAGAAAC-TAGCGTAACTACGG--AGAATTAAGCATTTATTAACGGGCATTCCTTCGC-AAAAA-CG-----GCGAAAATTA-CCCAC-AACCATTTCGTACAGTACTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTAAGTA---AAAT--------AGAAAAAAATAGATGTTAAATAACA-TAGATAT--TAA-ACATGATGAACAACATAT---CATTTATGTCAATTAC------AAAATAGGCTTCATCTTTTATTA-A--AAATGT-AAACTACGCAAAT---CAA--------GT-TA--TAATT----GAAACAATGACCGATCGGTGGGCCGTGTTCTA-ACAAAATC---AAA----AG-----A---------A-AATTTTA----TTATTTGTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGCGGTTGCAAATCACGCGTCACGG---AAACAAGAA-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTACTT----CTAAGTCAGTT-AAATAAC-T---TTATACTCGT
gi|111367 : AGTGTTGTTTGACTCTTAAAACATACATTTATGACAAAAGAAAAT-----AA-CCGTGTTATTGACCGCTATAATGGT---AGGGAAATGACCCACAGT-----GAATCACAGTTAAACATGA-TTTTT-ACT--TA--ATGTAGAGC--TATTATT-TTAGTGATACATAC----GCTGATCGGAA---GC-TAAACTAATACCTGATCGAATGATATTAACATATCTATAGAGAC-AGGCATAAC---GG--GTAATTGCGCATTTATCAACGAGCATTCCTTCGC-AAAA--AAAAAAAGCGAAAGATTTCCCAC-AACCATTTCACACAGTATTATTATAGTCATTGAAATTGCTGTTTATACAACATGAATG------------ATAAAGTTATCATTAGATTATTTAAGTATAAAAATAGAAGAAAACAATTACAATAAACAATAACGTAATTAACTTTAGTA---AATT--------AA-ATGTATTAAGTATTGAATAATACTATTTAT-CAAA-ACATGAGGAACAAAATAT---CATTCATGTAAATTAC------AAAATAGGCTTCATCTTTAGTTA-A--GAATAT-ATACTATACAAATAAACAA--------GT-TA--TTCTT----AAAACAATAACAGATCAGTGGGCCATGTTCGT-ACAAAATC---AAA----TG-----T---------ATAGTTTAA-----ATTTTCTAAATGCGAATAAA----TTAAG-AAAAATAAACATTAATTTA-TGGCAATTTGCAGTTGTAAATCACGCGTTACGG---AAACGAAAA-CTGGACA--CGCTCCTAATAAA-ATCAATCACTATTT----CTAAGTCAATT-AAAT-ACAG---TAATATTCGT
gi|111368 : GTGTTATTTTACTCTTAAAACATACACTTATTAATATAGAACAT-----AG-ACGTGTTATTGGCCGCTATAAGAGA---AAGAAAATCACCAACAGT-----GAATCAC----AAACACAA-TTTTT-ACT--AA--ATTAATAAC--TGTTATT-TTAGTGAAACATAC----ATCTATCGAAA---GT-TAAACTATTACCTGATCGAATGATGTTAACATATTCATAGAAAC-TGGCGTAACTACTG--AGAATTAAGCATTTTCTCATGGGCATTCCTTCGC-AAAAAACG-----GCGACAAATA-CCCTC-AATCATCTCAGGCAGTACTGTAATAGCTATTGAAATCGCTGATTTAACAACATAAATG------------ATAAACTTATAATTAGATTATTTAAGTATAGAAATAAAAGAAGACAG----------------CGTAATTAACTTTAGTA---AAAT--------AA-AAATATTAAATATTGAATAACA-TAAATAT-AAAA-ACATAATGAACAACATAT---CATTTATGTAAATTAC------AAAATAGGCTTCATCTTTAACTA-A--GAATAT-ATACTACACAAATAAATAA--------AT-TA--TTCTT----GAAACAATGACTGATCGGTGAGTTATGTTTTT-ACAAAATC---AAA----AG-----T---------A-AAGATAA----TATTTTCTAAACG-GAATTAA----TTAAA-AAA---AAGCATAAATTTA-AGGCAAAATGCAGTTGCAAATCACGTGTCACGG---AAACGAAAA-TAGGCCG--CAGTGC---TAAT-ATCAATCAATAATT----CTATGTCATTT-AAAT-AC-T---TCATATTCGT
gi|111369 : TTAT--CGATATAACA------AGCACGTGCTATTCACGGTCATGAATAA---AGGCGAATAGGCAACAGT-----GATTCGCAGCGAAACACAT-TTTTT-ACTCAAATGATTCATAAC--CGGTATTGTTAGCGATACATGC----ACAGTTTGGAA---GC-TGAAC-ACTAAATGATGTAATGTTGTTAACATGAACATACAAAC-TGACGTCGCCACTGTAAGA--TACGCATTGATTTATAAGCACTCATTTAC-A--------------TAAAAA-----CAC-AA---TTTCATGTAGT------GTTGCTA------TCACTCTTTAAACAATATGAATGCATTTTACTGATATAA---TATAATACGATTAATTGAGAATGAGGATAAAAGCAAACAG----------------TATAATTAACTTCTGCATCGAAATAATGAACAAG-AAAAACTA
gi|111370 : --AA--ATTAATAACACTGTTATT-TAAGTGACACATAC----ACTGAGCGAGA---GC-TGAACTATTACCTAATCGAG------------------AGCAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTTCTTCGT-AAAA--CG-----GCGAAAAATA-CCCAC-A-CCATTTCATACACTATTATAGTAGCCAGTTAAATCGGTGATTAAACAACATGAATG------------ATAAACGTATTATTAGATTAGTAAAGTATAACAATAAAAGAAAACAG----------------CTTTATTAACTTTAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAA-------------AA-ACATGATGAACAACATAT---CATTTATGTAAACTAC------CAAAAAGGTTTCATCTTATATCA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----AAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TAATTTGTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATGTA-AGGCAATATGCGGTTGCATATCACGTGTCACGG---AAACGAGAA-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TTATACTCGT
gi|111371 : GAGTGATGTTAACATATTAATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTTCTTCAC-AAAA--CG-----GCGAAACATA-CCCAC-AACCATTTCATACAGTATTGCAGTAGCCAGTGAAATCGGTGATTAAACAACATGAA-G------------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAAAAG----------------CGTTATTAACTTAAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTTATGTAAATTAC------AAACAAAGCTTCATCGTTTATCA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGAC----CGGTGGGTCGTGTTCTTAAAAAAATC---AAA----AGA----A---------A-AACTGAA----TAATTTGTAAATGCAAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGTGGTTGCATATCACGCGTCACGG---AAACGAGAA-TGAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TTA-ACTCGT
gi|111372 : AGTA---AAAT--------AA-AATTATTAAATATTGAATAACA-TAAATAT-AAAAAACATGATGAACAACGTAT---CATTTATGTATTTTAC------AAAATAGGCTTCATCTTTAATTA-A--GAATAT-ATACTACACAAATAAATAA--------GT-TA--TTCTT----AAAACAATGACTGATTGGTGGGTTATGTTCTT-ACAAAATC---AAA----AG-----T---------A-AAGATAA----TATTTTCTAAACG-GAATTAATTTTTTAA--AAAAAT---CATTAATTTA-AGGCAATATGCAGTTGCAAATCACGCGTCACGG---AAACGAAAA-TAGGCCG--CGGCGC---TAAT-ATCAATCACTAGTT----CTAAGTCAGTT-AAAT-AC-T---TCATATTCGT
gi|111373 : TAG---CATTTCT-TAAATTACTTTTTTAAAAAAGTCTT-----TTCACTA-CGCAAATGTTAGACTACTCAAAT---TAA--------AA-TAAATATTTTATTGAAACATTAACCGATTAGAGGTTCAAACTCTT-A-AAAATC---CAT----AT-----ACTAGTATACA-TGTTT------TACTTTCTAAATAAGCATAAC----TTTAT-AAAAGTAAGCATCAATTTA-GAG-AGTATACAGTTGTAACTCA-GC----TGGATTAAACAAG---TTA-CCGAATGAAATTCAT--TCATCAATTACTCTTTAAAAC-AACTCAATT-GAAT-AC-T---
gi|111374 : AC------AAAAT------CACCTTTAATTA-A--GAATAT-ATACTACACAAATAAACAA--------GT-TA--TTCTT----GAAACAATGAATGATCGGTGGGTTATGTTCTT-ACAAAATC---AAA----AG-----T---------A-AAGATAA----TATTTTCTAAACG-GAATTAA----TTAA--AAAAATAAGCATTAATTTA-AGGCAATATGCAGTTTCAAATCACGCGTCAAGG---AAACGAAAA-TAGACCG--CGGCGCTT---AT-ATCAATCACTAATT----CTAAGTTAGTTAAAAC-AC-T---TCATATTCGT
gi|111375 : TTTCACTACAC-AAATGTTAGACTACTCAAAT---TAA--------ATGTA--TTATT----GAAACATTAACCGATTAGAGGTTCAAACTCTT-A-AAAATC---CAT----AT-----ACTAGTATACA-TGTTT------TACTTTTTAAATAAGCATAAC----TTTAT-AAAAGTAAGCATCAATTTAGAGG--GTATACAGTTGTAAATCA---GT--TGG---ATACGACAAGTTA-CCG--
gi|111376 : tctTTTCACTACAC-AAATGTTAAACTATTCAAAT---TAAAAAAAAATGT-T---TA-TT----GAAACATTAACCGATTAGAGGTTCAAACTCTT-A-AAAATC---CAT----AT-----ACCAGTATACA-TATTT------TACTTTCTAAATAAGCATAAC----TTTAT-AAAAGTAAGCATCAATTTA-GGG-AGTATACAGTTGTAAATCA---GT--TGG---ATACGACAAGTTA-CCG--aatgaaatccattcaccaattgctctttaaaacaactcgattgaatactt
gi|111377 : tctTTTCACTACAC-AAATGTTAGACTACTCAAAC---TAAAAAAAT--GT-TT--TA-TT----GAAACATTAACCGATAAGAGGTTCAAACTCTT-AAAAATTC---ATATACTAGTATACAT--------A-GATTT------TACTTTCTAAATAAGCATAAC----TTTAT-AAAAGTAAGCCTCAATTTA-GAG-AGTATACAGTTGTAAATCAaatgaaattcattcatcagttactctttaaaacaactaattgaatact
gi|111378 : tctCACAAAT---CAA--------GT-TA--CACTT----GAAACAATGACCGATCGGTGGGCCGTATTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TAATTTGTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATCTA-AGGCAATATGCGGTTGCATATCACGCGTCACGG---AAACGAGAG-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TGTTACTTGTgttggttatgacaagttacagaatgaaattcattcatcaattactctttaaaacaactcaattgaatactaagtcat
gi|111379 : aaacacaattTT----GAAACATTAACCGATTACAGGTTCAAACTCTT-A-AAAATCCATAAA----AT-----A---------G-TATTCATGTTTTACTTTCTAAATAAGCATAAC----TTAAT-AAAAGTAAGCATCAATTTATAG--AGTATACAGTTGTAAATCA---GT--TGG---ATACAAG---TTA-CCGAATGAAATTCAT--TCATCGATTACTATTTAAAAC-AACTCAATT-GAAT-AC-TAAGTCAT
blockSeqs : G TAATA C TAA ATCTG GGT . T CA TG AC G ACCT CCT C A G TA A AAAAAAA T A G CATTTTACTGAT G G TTACAATAAACAATAA T TCG AATGAACA A C G AA A CAG TTTTTT T CGC T A AAA AAAAAAAT G AA AC TATT A C CAT TACT ACTAGTATAC T ATGTTT A C TTTT GA G C C C ATT G G AA A G C AAAA A A A AAG
blockSeqs : A . . . . GGC . . . . . . G . . C . . . AACG . . T . T T . A . . . . A A . . . A CAC T T AAA AAAAAT . . TC . . C . . ACTAGTATAC . AA T C . G T C C C . G G AA A A C AAAA . . . .
blockSeqs : G . . . . GTT . . . . . . . . . C . . . AACG . . G . T T . T . . . . A A . . . T CAC T A AAA . . . AA . . C . . ACCAGTATAC . AA A C . G . C C C . . G . A A . . . . . .
blockSeqs : T . . . . AAT . . . . . . . . . C . . . ACG . . G . G G . T . . . . G C . . . A CAC T T AAA . . . TC . . C . . TATACAT . TA T C . A . C C T . . G . A A . . . . . .
blockSeqs : G . . . . GGT . . . . . . . . . C . . . CG . . T . T T . A . . . . T A . . . A A . T AAA . . . TC . . C . . AA . AA T C . G . C C C . . G . A A . . . . . .
blockSeqs : G . . . . AGT . . . . . . . . . A . . . CG . . T . T T . A . . . . A A . . . T A . A . . . . AC . . C . . A . AA A A . G . C C C . . G . A A . . . . . .
blockSeqs : A . . . . AGC . . . . . . . . . T . . . CG . . G . G A . A . . . . G A . . . T A . A . . . . AC . . A . . T . AA A A . T . C C C . . G . A A . . . . . .
blockSeqs : G . . . . . . . . . . . . . . C . . . CG . . G . G G . T . . . . A . . . . A A . T . . . . TC . . C . . A . AA T A . T . C C C . . G . A A . . . . . .
blockSeqs : G . . . . . . . . . . . . . . C . . . . . . . . . G . T . . . . . . . . . C A . G . . . . AT . . C . . T . AA C A . T . C C C . . A . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . A . . . . . . . . . . . A A . T . . . . TC . . A . . T . AA T C . T . C C C . . G . . . . . . . . .
blockSeqs : . . . . . . . . . . C A . G . . . . TA . . C . . A . AA C A . G . . . . . . . . . . . . . . . .
blockSeqs : C A . A . . . . AC . . . . . T . . C . . T . . . . . . . . . . . . . . . .
blockSeqs : C A . G . . . . A . . . . . T . . C . . . . . . . . . . .
blockSeqs : . . . . A . . . . . A . . A . . . . . . . . . . .
blockSeqs : . . . . . A . . C . . . . .
blockSeqCons :
originalCons : GAGTGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTGACCGCTATAAGAGA---AGGAAAATCACCAACAGT-----GAATCACGGTTAAACACAA-TTTTT-ACT--AA--ATTAATAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCGAAA---GC-TGAACTATTACCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTCCTTCGC-AAAA--CG-----GCGAAAAATA-CCCAC-AACCATTTCATACAGTACTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTTAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTTATGTAAATTAC------AAAATAGGCTTCATCTTTNATTA-A--AAATAT-ANACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATCGGTGGGTCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TANTTTCTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGCGGTTGCAAATCACGCGTCACGG---AAACGAGAA-TTAGCCG--CGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-AC-T---TCATACTCGT
finalCons : GAGTGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTGACCGCTATAAGAGA---AGGAAAATCACCAACAGT-----GAATCACGGTTAAACACAA-TTTTT-ACT--AA--ATTAATAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCGAAA---GC-TGAACTATTACCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTCCTTCGC-AAAA--CG-----GCGAAAAATA-CCCAC-AACCATTTCATACAGTACTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTTAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTTATGTAAATTAC------AAAATAGGCTTCATCTTTNATTA-A--AAATAT-ANACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATCGGTGGGTCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TANTTTCTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGCGGTTGCAAATCACGCGTCACGG---AAACGAGAA-TTAGCCG--CGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-AC-T---TCATACTCGT
Alignments
lowQualScore : 1111 111111111 222222222222 2222222222222222 11111111 111111 1111 1 222 11111111 444444444444444 1 1111
lowQualScore : 1 88888 3 0 666 99999 666 3 3 44 44 44 3 0000 666 3 1 3 55 3 555555555 3 3 0 2 000000000000 2 1 6666666666666666 1 666 33333333 3 0 4 1 44 4 666 000000 0 1 3333 1 1 333 77777777 2 33 22 5555 2 5 444 5555 000000000000000 2 888888 1 0 0 5555 99 5 4 0 3 2 444 5 4 77 2 3 6 3333 3 3 3 555
lowQualScore : . ..... . . ... ..... ... . . .. .. .. . .... ... . . . .. . ......... . . . . ............ . . ................ . ... ........ . . . . .. . ... ...... . . .... . . ... ........ . .. .. .... . . ... .... ............... . ...... . . . .... .. . . . . . ... . . .. . . . .... . . . ...
lowQualScore : 0 33333 3 5 444 11111 555 6 6 66 66 66 3 4444 444 6 8 3 00 6 555555555 6 6 5 5 555555555555 5 6 5555555555555555 4 444 22222222 6 5 0 4 77 0 444 555555 5 0 8888 4 0 333 33333333 7 77 55 3333 5 6 444 3333 444444444444444 5 888888 0 4 3 3333 11 0 1 6 3 7 777 3 4 33 2 4 2 1111 1 1 1 444
consensus : GAGTGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTGACCGCTATAAGAGA---AGGAAAATCACCAACAGT-----GAATCACGGTTAAACACAA-TTTTT-ACT--AA--ATTAATAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCGAAA---GC-TGAACTATTACCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTCCTTCGC-AAAA--CG-----GCGAAAAATA-CCCAC-AACCATTTCATACAGTACTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTTAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTTATGTAAATTAC------AAAATAGGCTTCATCTTTNATTA-A--AAATAT-ANACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATCGGTGGGTCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TANTTTCTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGCGGTTGCAAATCACGCGTCACGG---AAACGAGAA-TTAGCCG--CGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-AC-T---TCATACTCGT
Reference ( family-769 ) : GAGTGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTGACCGCTATAAGAGA---AGGAAAATCACCAACAGT-----GAATCACGGTTAAACACAA-TTTTT-ACT--AA--ATTAATAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCGAAA---GC-TGAACTATTACCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTCCTTCGC-AAAA--CG-----GCGAAAAATA-CCCAC-AACCATTTCATACAGTACTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTTAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTTATGTAAATTAC------AAAATAGGCTTCATCTTTNATTA-A--AAATAT-ANACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATCGGTGGGTCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TANTTTCTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGCGGTTGCAAATCACGCGTCACGG---AAACGAGAA-TTAGCCG--CGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-AC-T---TCATACTCGT
gi|111358 : GAATGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTAACCGCTATAATAGA---AGGAAAATCACCAACAGT-----GAATCACGGTTAAACACAAATTTTT-GCT--AA--ATTTATAAC--TGTTATT-TTAGTGAAACATAC----ACCGACCGAAA---GC-TGAACTATAACCTGATCGAGTGATGTTAACATATTAAAAGAAAC-TGGCGTAACTATGG--AGAATTAAGCATTTACTCACGGGCATTTCTTCGC-AAAT--CG-----GCGAAAAATA-CCCAC-AATCATTTCATACAGTATTGTAGTAGCTAGTACAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATAAGATTAGTAAAGTATAAAAATAAAAGAAAACAA----------------CGTTATTAACTTTAGTA---AAAT--------AG-AAAAATTTGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTGATGTAAATTAC------AAAATAGGCTTCATCTTTTATTA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TAATTTGTAAATGCCAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGTGGTTGCATATCACGCGTCACGG---AAACGAGAA-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TCATACTCGT
gi|111359 : GAGTGTTATTTTACTCATGAAACGTACATTTATGACAATAGAAAAT-----AG-ACGTGTTATAAACCGCTATAATAGA---AGGAAAATCAACAGCAGT-----GAATCACGGTTTAACACAA-TT----------------AATAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCCAAACCTGCCTGAACTATGACCTGATCGAGTGATGTTAACATATTAATATGAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTCCTTCGC-AAAA--CG-----GCGAAAAATA-CCCAC-AACCATTTCATACAGTATTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATTAAATTTGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTTTGTA---AAAT--------AT-AAAATTTAGATGTTGAATAACA-CAGATTT-AAAA-ACATGATGAACAACATAT---CATTTAAGTAAATTAC------AAAAAAGGCTTCATCTTTTATTA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGACCGATTGGTGGGCCGTGTTCTT-AC-AAATC---AAA----AG-----A---------A-AATTTAA----TAATTTGTAAATGCGAAAAAA----TTAAGAAAAAATAAGCA-TAATTTA-AGGCAATATGCGGTTGCATATCACGCTTCAAGG---TAACAAGAA-TTAGCCG--TGGCGCTTATGAA-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TCTTTCTCGT
gi|111360 : GAGTGTTATTTTACTCTTAAAACATACACTTATAACAATAGAAA-T-----AG-ACGTGTTATTGGCCGCTATAAGAGA---AAGAAAATTACCAACAGT-----GAATCAC----AAACACAA-TTTTT-ACT--AT--ATTAATAAC--TGTTATT-TAAGTGAAACATAC----ATCGATCGAAA---GC-TAAACTATAACCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTTCTCACGGGCATTCCTTCGC-AAAAAACG-----GCGAAAAATA-CCCAC-AACCATGTCATGCTGTACTGTAATAGTTATTGAAATCGCTGATTAATCAACCTGAATG------------ATAAACTTATAATTAGATTATTAAAGTATAAAAATAAAAGAAGACAG----------------CGTAATTAACTTTAGTA---AAAT--------AA-AATAATTAAATATTGAATAACA-TGAATATAAAAA-ACATGATGAACAACATAT---CACTTACGTAAATTAC------AAAATAGGCTTCATCTTTAATTA-A--GAATAT-ATACTACACAAATAAATAA--------GT-TA--TTCTT----GAAACAATGACTGATCGGTGGGTTATGTTCTT-ACAAAATC---AAA----AG-----T---------G-AAGATAA----TATTTTCTAAACG-GAATTAA----TTA---AAAAATAAGCATTAATTTA-AGGCAATATGCTGTTGCAAATCACGCGTCACGG---AAACGAAAA-AAGGCCG--CGGCGCTT---AT-ATCAATCACTTATT----CTAAGTCAATT-AAAT-AC-T---TCATATTCGT
gi|111361 : GAGTGTTATTT-ACTCTTAAAACGTACACTTATGACAATAGAAAATTAATAAC-AC-TGTTATT
gi|111362 : GAGTGTTATTTTACTCTTAAAACATACACTTATTACAATAGAAAAT-----AG-ACGTGTTATTGGCCGCTATAAGAGATAAAAGAAAATCACCAACAGT-----GAATCA----TAAACACAG-TTTTT-ACT--AA--ATTAACAAC--TGTTATT-TTAGTGAAACACGC----ATCGATCGAAA---GC-TAAACTATTATCTGATCGAGTGATGTTAACATATTCATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTTCTCACGGGCATTCCTTCGCAAAAA--CG-----GCGAAAAATA-CCCAC-AACCATGTCATGCAGTACTGTAATAGCTAGTGAAATCGCTGTTTAAACAACATGAATG------------ATAAACTTATAATTAGATTATTAAAGTATAAAAAT-----ATAACAG----------------CGTTATTAACTTTAGTG---AAAT--------AA-AAATATTAAATATTGAATAACA-TAAATAT-AAAA-ACATGATGAACAACATATCAGCATTTA
gi|111363 : GAGTGTTATTTTACTCTTAAAACATACACTTATGACTACAGAAAAT-----AG-ACGTGTTATTAACCGCTATAATAGA---AGAAAAATCACCAACAGT-----GAATCACGGCTAAACACAA---TTC-AC---AA--ATCAA-------GTTACA-CT--TGAAACA-ATG---ACCGATCG
gi|111364 : GGGTGTTATTTTACTCTTAAAACATACACTTATGACAATAGAAAAT-----AG-ACGTGTTATTAACCGCTATAAGAGA---AGGAAAATCCCCAACAGA-----GAATCACGTTTAAACACAA-TTTTA-TTT--AA--ATTGGTAAC--TGTTATT-TTAGTGAAACATAC----ACCGATCGAAA---GC-TAAACTATTACCTGATCGAGTGATGTTAACATAGCCATAGAAAC-TGGTGTAACTACGG--AGAAGTAAGAATTTATACACGGGTATTCCTT------------------CGAAAAATA-ATCGCAAACCATTGTATA
gi|111365 : GGGTGTTATTTTACTATTAAAACGTACACTTATAACAATAGAAAAT-----AG-ACGTGT--TTGACCGCTATAAGAGA---AGGAAAATCACCAACAGTATCTGAAATCA-AATTAAACACAT-CTTTT-ACT--AA--ATTAATAAC---G-TATA-ATAGTGAAACATACACCTACCTACCGAAA---GC-TGAGCTATTACCTGATTAGGTGATGTTAACATATTCATAGGGGCGTAGCGTGAC
gi|111366 : AGTGTTATTTTACTCTTAAAACGTACACTTATGACAATAGAAAAC-----AG-ACGTGTTATTAACCGCTATAAGAGA---AGGAAAATCACCAACAGT-----GAAATGCGGTTAAACACAA-TTTTTTACT--AG--ATTAATAAC--TTTTATT-TCAGTGAAACATAC----ACCGATCGAAA---GC-TGAACTATTATCTGATCGAGTGATGTTTACATAGTAATAGAAAC-TAGCGTAACTACGG--AGAATTAAGCATTTATTAACGGGCATTCCTTCGC-AAAAA-CG-----GCGAAAATTA-CCCAC-AACCATTTCGTACAGTACTGTAGTAGCTAGTGAAATCGCTGATTAAACAACATGAATG------------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAACAG----------------CGTTATTAACTTAAGTA---AAAT--------AGAAAAAAATAGATGTTAAATAACA-TAGATAT--TAA-ACATGATGAACAACATAT---CATTTATGTCAATTAC------AAAATAGGCTTCATCTTTTATTA-A--AAATGT-AAACTACGCAAAT---CAA--------GT-TA--TAATT----GAAACAATGACCGATCGGTGGGCCGTGTTCTA-ACAAAATC---AAA----AG-----A---------A-AATTTTA----TTATTTGTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGCGGTTGCAAATCACGCGTCACGG---AAACAAGAA-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTACTT----CTAAGTCAGTT-AAATAAC-T---TTATACTCGT
gi|111367 : AGTGTTGTTTGACTCTTAAAACATACATTTATGACAAAAGAAAAT-----AA-CCGTGTTATTGACCGCTATAATGGT---AGGGAAATGACCCACAGT-----GAATCACAGTTAAACATGA-TTTTT-ACT--TA--ATGTAGAGC--TATTATT-TTAGTGATACATAC----GCTGATCGGAA---GC-TAAACTAATACCTGATCGAATGATATTAACATATCTATAGAGAC-AGGCATAAC---GG--GTAATTGCGCATTTATCAACGAGCATTCCTTCGC-AAAA--AAAAAAAGCGAAAGATTTCCCAC-AACCATTTCACACAGTATTATTATAGTCATTGAAATTGCTGTTTATACAACATGAATG------------ATAAAGTTATCATTAGATTATTTAAGTATAAAAATAGAAGAAAACAATTACAATAAACAATAACGTAATTAACTTTAGTA---AATT--------AA-ATGTATTAAGTATTGAATAATACTATTTAT-CAAA-ACATGAGGAACAAAATAT---CATTCATGTAAATTAC------AAAATAGGCTTCATCTTTAGTTA-A--GAATAT-ATACTATACAAATAAACAA--------GT-TA--TTCTT----AAAACAATAACAGATCAGTGGGCCATGTTCGT-ACAAAATC---AAA----TG-----T---------ATAGTTTAA-----ATTTTCTAAATGCGAATAAA----TTAAG-AAAAATAAACATTAATTTA-TGGCAATTTGCAGTTGTAAATCACGCGTTACGG---AAACGAAAA-CTGGACA--CGCTCCTAATAAA-ATCAATCACTATTT----CTAAGTCAATT-AAAT-ACAG---TAATATTCGT
gi|111368 : GTGTTATTTTACTCTTAAAACATACACTTATTAATATAGAACAT-----AG-ACGTGTTATTGGCCGCTATAAGAGA---AAGAAAATCACCAACAGT-----GAATCAC----AAACACAA-TTTTT-ACT--AA--ATTAATAAC--TGTTATT-TTAGTGAAACATAC----ATCTATCGAAA---GT-TAAACTATTACCTGATCGAATGATGTTAACATATTCATAGAAAC-TGGCGTAACTACTG--AGAATTAAGCATTTTCTCATGGGCATTCCTTCGC-AAAAAACG-----GCGACAAATA-CCCTC-AATCATCTCAGGCAGTACTGTAATAGCTATTGAAATCGCTGATTTAACAACATAAATG------------ATAAACTTATAATTAGATTATTTAAGTATAGAAATAAAAGAAGACAG----------------CGTAATTAACTTTAGTA---AAAT--------AA-AAATATTAAATATTGAATAACA-TAAATAT-AAAA-ACATAATGAACAACATAT---CATTTATGTAAATTAC------AAAATAGGCTTCATCTTTAACTA-A--GAATAT-ATACTACACAAATAAATAA--------AT-TA--TTCTT----GAAACAATGACTGATCGGTGAGTTATGTTTTT-ACAAAATC---AAA----AG-----T---------A-AAGATAA----TATTTTCTAAACG-GAATTAA----TTAAA-AAA---AAGCATAAATTTA-AGGCAAAATGCAGTTGCAAATCACGTGTCACGG---AAACGAAAA-TAGGCCG--CAGTGC---TAAT-ATCAATCAATAATT----CTATGTCATTT-AAAT-AC-T---TCATATTCGT
gi|111369 : TTAT--CGATATAACA------AGCACGTGCTATTCACGGTCATGAATAA---AGGCGAATAGGCAACAGT-----GATTCGCAGCGAAACACAT-TTTTT-ACTCAAATGATTCATAAC--CGGTATTGTTAGCGATACATGC----ACAGTTTGGAA---GC-TGAAC-ACTAAATGATGTAATGTTGTTAACATGAACATACAAAC-TGACGTCGCCACTGTAAGA--TACGCATTGATTTATAAGCACTCATTTAC-A--------------TAAAAA-----CAC-AA---TTTCATGTAGT------GTTGCTA------TCACTCTTTAAACAATATGAATGCATTTTACTGATATAA---TATAATACGATTAATTGAGAATGAGGATAAAAGCAAACAG----------------TATAATTAACTTCTGCATCGAAATAATGAACAAG-AAAAACTA
gi|111370 : --AA--ATTAATAACACTGTTATT-TAAGTGACACATAC----ACTGAGCGAGA---GC-TGAACTATTACCTAATCGAG------------------AGCAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTTCTTCGT-AAAA--CG-----GCGAAAAATA-CCCAC-A-CCATTTCATACACTATTATAGTAGCCAGTTAAATCGGTGATTAAACAACATGAATG------------ATAAACGTATTATTAGATTAGTAAAGTATAACAATAAAAGAAAACAG----------------CTTTATTAACTTTAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAA-------------AA-ACATGATGAACAACATAT---CATTTATGTAAACTAC------CAAAAAGGTTTCATCTTATATCA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----AAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TAATTTGTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATGTA-AGGCAATATGCGGTTGCATATCACGTGTCACGG---AAACGAGAA-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TTATACTCGT
gi|111371 : GAGTGATGTTAACATATTAATAGAAAC-TGGCGTAACTACGG--AGAATTAAGCATTTATTCACGGGCATTTCTTCAC-AAAA--CG-----GCGAAACATA-CCCAC-AACCATTTCATACAGTATTGCAGTAGCCAGTGAAATCGGTGATTAAACAACATGAA-G------------ATAAACGTATAATTAGATTAGTAAAGTATAAAAATAAAAGAAAAAAG----------------CGTTATTAACTTAAGTA---AAAT--------AG-AAAAATTAGATGTTGAATAACA-TAGATAT-AAAA-ACATGATGAACAACATAT---CATTTATGTAAATTAC------AAACAAAGCTTCATCGTTTATCA-A--AAATAT-AAACTACACAAAT---CAA--------GT-TA--TACTT----GAAACAATGAC----CGGTGGGTCGTGTTCTTAAAAAAATC---AAA----AGA----A---------A-AACTGAA----TAATTTGTAAATGCAAATAAA----TTAAG-AAAAATAAGCATTAATTTA-AGGCAATATGTGGTTGCATATCACGCGTCACGG---AAACGAGAA-TGAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TTA-ACTCGT
gi|111372 : AGTA---AAAT--------AA-AATTATTAAATATTGAATAACA-TAAATAT-AAAAAACATGATGAACAACGTAT---CATTTATGTATTTTAC------AAAATAGGCTTCATCTTTAATTA-A--GAATAT-ATACTACACAAATAAATAA--------GT-TA--TTCTT----AAAACAATGACTGATTGGTGGGTTATGTTCTT-ACAAAATC---AAA----AG-----T---------A-AAGATAA----TATTTTCTAAACG-GAATTAATTTTTTAA--AAAAAT---CATTAATTTA-AGGCAATATGCAGTTGCAAATCACGCGTCACGG---AAACGAAAA-TAGGCCG--CGGCGC---TAAT-ATCAATCACTAGTT----CTAAGTCAGTT-AAAT-AC-T---TCATATTCGT
gi|111373 : TAG---CATTTCT-TAAATTACTTTTTTAAAAAAGTCTT-----TTCACTA-CGCAAATGTTAGACTACTCAAAT---TAA--------AA-TAAATATTTTATTGAAACATTAACCGATTAGAGGTTCAAACTCTT-A-AAAATC---CAT----AT-----ACTAGTATACA-TGTTT------TACTTTCTAAATAAGCATAAC----TTTAT-AAAAGTAAGCATCAATTTA-GAG-AGTATACAGTTGTAACTCA-GC----TGGATTAAACAAG---TTA-CCGAATGAAATTCAT--TCATCAATTACTCTTTAAAAC-AACTCAATT-GAAT-AC-T---
gi|111374 : AC------AAAAT------CACCTTTAATTA-A--GAATAT-ATACTACACAAATAAACAA--------GT-TA--TTCTT----GAAACAATGAATGATCGGTGGGTTATGTTCTT-ACAAAATC---AAA----AG-----T---------A-AAGATAA----TATTTTCTAAACG-GAATTAA----TTAA--AAAAATAAGCATTAATTTA-AGGCAATATGCAGTTTCAAATCACGCGTCAAGG---AAACGAAAA-TAGACCG--CGGCGCTT---AT-ATCAATCACTAATT----CTAAGTTAGTTAAAAC-AC-T---TCATATTCGT
gi|111375 : TTTCACTACAC-AAATGTTAGACTACTCAAAT---TAA--------ATGTA--TTATT----GAAACATTAACCGATTAGAGGTTCAAACTCTT-A-AAAATC---CAT----AT-----ACTAGTATACA-TGTTT------TACTTTTTAAATAAGCATAAC----TTTAT-AAAAGTAAGCATCAATTTAGAGG--GTATACAGTTGTAAATCA---GT--TGG---ATACGACAAGTTA-CCG--
gi|111376 : tctTTTCACTACAC-AAATGTTAAACTATTCAAAT---TAAAAAAAAATGT-T---TA-TT----GAAACATTAACCGATTAGAGGTTCAAACTCTT-A-AAAATC---CAT----AT-----ACCAGTATACA-TATTT------TACTTTCTAAATAAGCATAAC----TTTAT-AAAAGTAAGCATCAATTTA-GGG-AGTATACAGTTGTAAATCA---GT--TGG---ATACGACAAGTTA-CCG--aatgaaatccattcaccaattgctctttaaaacaactcgattgaatactt
gi|111377 : tctTTTCACTACAC-AAATGTTAGACTACTCAAAC---TAAAAAAAT--GT-TT--TA-TT----GAAACATTAACCGATAAGAGGTTCAAACTCTT-AAAAATTC---ATATACTAGTATACAT--------A-GATTT------TACTTTCTAAATAAGCATAAC----TTTAT-AAAAGTAAGCCTCAATTTA-GAG-AGTATACAGTTGTAAATCAaatgaaattcattcatcagttactctttaaaacaactaattgaatact
gi|111378 : tctCACAAAT---CAA--------GT-TA--CACTT----GAAACAATGACCGATCGGTGGGCCGTATTCTT-ACAAAATC---AAA----AG-----A---------A-AATTTAA----TAATTTGTAAATGCGAATAAA----TTAAG-AAAAATAAGCATTAATCTA-AGGCAATATGCGGTTGCATATCACGCGTCACGG---AAACGAGAG-TTAGCCG--TGGCGCTTATAAT-ATCAATCACTATTT----CTAAGTCAGTT-AAAT-GC-T---TGTTACTTGTgttggttatgacaagttacagaatgaaattcattcatcaattactctttaaaacaactcaattgaatactaagtcat
gi|111379 : aaacacaattTT----GAAACATTAACCGATTACAGGTTCAAACTCTT-A-AAAATCCATAAA----AT-----A---------G-TATTCATGTTTTACTTTCTAAATAAGCATAAC----TTAAT-AAAAGTAAGCATCAATTTATAG--AGTATACAGTTGTAAATCA---GT--TGG---ATACAAG---TTA-CCGAATGAAATTCAT--TCATCGATTACTATTTAAAAC-AACTCAATT-GAAT-AC-TAAGTCAT