lowQualScore : 111 111111111
lowQualScore : 33 000 7777777 33 3 77777 888888888 3
lowQualScore : .. ... ....... .. . ..... ......... .
lowQualScore : 22 000 6666666 22 3 77777 222222222 3
consensus : AATCAAAGGCCTGA--A--CGGCCTGA-------GGGA--AGGCTCGCTCGTTCACAGTTTTGCCCAT-----CATGTCG-TCTTT---CTTTAATTTCTTGTCAGAATATGATATA
Reference ( gi|157628 ) : AATCAAAGGCCTGA--A--TGGCCTGA-------GGGA--AGGCTCACTCATTCACAGTTTTGCCCAT-----CATGTCG-GCTGT---CTTTAATTTCTTGTCAGAATACGATATA
gi|157629 : AATCAAATGGCTGA--A--CGGTCTGA-------AGGA--AGGCTCACTCATTCACAGTTTTGCCCAT-----CATGT----CTTT---CTTTAATTTTTTGTCAGAATACGATATA
gi|157630 : AATCAAAGGCCTGA--A--CGGCCTGA-------GGGA--AGGCTCACTTATC--CAGTCTTGCCAAT-----CATGTTG-TCTTT---CTTTAATTTCTTTTCAGAATATGATACA
gi|157631 : AATCAAAAGCCTGA--A--CTGTCCAG-------GGGA--AGGCTGGCTTGTTCACTGTTTTGCCCAT-----CATGTCA-TCTTT---CTTTAATTTCATGTCAGAATATGAGATA
gi|157632 : AATCAAAGACCTTA--A--TGGCCAGA-------GGGA--AGGCTCACTCGTTCACAGATTTGCCCAC-----CATGATG-TCTTT---CTTTAATTTCTTGT
gi|157633 : AATCAAAGGCCACACAA--CGGCCTTA-------GGGA--AGGCTTACTCGTTCACAGTTTTGCCCAG-----CATGTCG-TTTA----CTTTGAATTCTTGTCATAATATGATTTAggcgactataataca
gi|157637 : AATCAAAGGCCTGA--A--GGGCCTGA-------GGGA--AGGCTCGCT
gi|157636 : AATCAAAGGCCTGA--A--GGGCCTGA-------GGGA--AGGCTCGCT
gi|157635 : AATCAAAGGCCTGA--A--GGGCCTGA-------GGGA--AGGCTCGCT
gi|157638 : AATCAAAGGCCTAA--A--AGGCCTGA-------GGGA--AGGCTCACT
gi|157634 : AAACAAAGGCCTGA--A--CGGCCTGA-------GGAA--AGGCCCACTCGTT
gi|157640 : AATCAAAGGTCTGA--A--GGGCCTGA-------GGGA--AGGCTCGCT
gi|157639 : AATCAAAGGCCTGA--A--AGGCCTGA-------AGGA--AGGCTCGCT
gi|157641 : ATCAAATGCCTGA--A--CGGCCTCA-------GGGA--AGGGTCACTCGTTCACAGTTTTGCCCAT-----CCTGTCA-TCTTT---CTTTAATTTTTTGTTAAACTATAATATA
gi|157642 : ATCAAAGGCCTGA--A--TGGCCAGA-------GGGA--AGGCGCACTTGTT--CTGTCTTGATCAT-----CATGTCA-CCTTT---CTTGAATTTCTTGTCAGAATATAATA
gi|157643 : ATCAAAGATCTGA--A--CGGCCTGA-------GGGA--AGACTCATTCGTTCACAGT
gi|157644 : AAAG--CTGA--AGTTGGTCTGACTTTGATGAGATTGGGTTCAC--GTTCAAATTTTCGCCCGT-----TATGTCG-TCTTT---CTTTAACGTCTTGTCAGAATATGACATAatgtcatgacgtcttagttta
gi|157645 : CCGA--A--CGACCTGA-------GGAA--AGGCTCACTCGTTCACAGTTTTGCCCAT-----CAGTTTG-TCTTT---CTTTAATTTCTAGTCAGAATATGATATA
gi|157646 : CAGTTTTGCCCAT-----TATGTCT-ATTTT---TTTTAA-TTCTTGTCAGAATATGA
gi|157647 : ttgttCAGTTTTGCCCATTGACACGTGTCG-TTTA----CTTTAATTTCTCGTCAGAATATGAT
gi|157648 : CAGTTTTGCCCA------CGTGTCGTGTCGTTTACTTTAATTTCTTGTCAG-ATATGAT
gi|157649 : TTTACCCAT-----CATGTAG-TCTTT---CTTTAATTTCTTGTCAGAATACGA
Alignments
lowQualScore : 33 1 0 2 5555 66666 1 33
lowQualScore : .. . . . .... ..... . ..
lowQualScore : 22 6 4 5 7777 77777 1 99
consensus : AATCAAAGGCCTGA--ACGGCCTGAGGGAAGGCTCGCTCGTTCACAGTTTTGCCCA----T-----CATGTCGTCTTTCTTTAATTTCTTGT--CAGAATATGATATA
Reference ( family-762 ) : AATCAAAGGCCTGA--ACGGCCTGAGGGAAGGCTCGCTCGTTCACAGTTTTGCCCA----T-----CATGTCGTCTTTCTTTAATTTCTTGT--CAGAATATGATATA
gi|157628 : AATCAAAGGCCTGA--ATGGCCTGAGGGAAGGCTCACTCATTCACAGTTTTGCCCA----T-----CATGTCGGCTGTCTTTAATTTCTTGT--CAGAATACGATATA
gi|157629 : AATCAAATGGCTGA--ACGGTCTGAAGGAAGGCTCACTCATTCACAGTTTTGCCCA----T-----CAT---GTCTTTCTTTAATTTTTTGT--CAGAATACGATATA
gi|157630 : AATCAAAGGCCTGA--ACGGCCTGAGGGAAGGCTCACTTATCCA--GTCTTGCCAA----T-----CATGTTGTCTTTCTTTAATTTCTTTT--CAGAATATGATACA
gi|157631 : AATCAAAAGCCTGA--ACTGTCCAGGGGAAGGCTGGCTTGTTCACTGTTTTGCCCA----T-----CATGTCATCTTTCTTTAATTTCATGT--CAGAATATGAGATA
gi|157632 : AATCAAAGACCTTA--ATGGCCAGAGGGAAGGCTCACTCGTTCACAGATTTGCCCA----C-----CATGATGTCTTTCTTTAATTTCTTGTGGC-GACTATAATACA
gi|157633 : AATCAAAGGCCACACAACGGCCTTAGGGAAGGCTTACTCGTTCACAGTTTTGCCCA----G-----CATGTCGT-TTACTTTGAATTCTTGT--CATAATATGATTTA
gi|157634 : AAACAAAGGCCTGA--ACGGCCTGAGGAAAGGCCCACTCGTT
gi|157635 : AATCAAAGGCCTGA--AGGGCCTGAGGGAAGGCTCGCT
gi|157636 : AATCAAAGGCCTGA--AGGGCCTGAGGGAAGGCTCGCT
gi|157637 : AATCAAAGGCCTGA--AGGGCCTGAGGGAAGGCTCGCT
gi|157638 : AATCAAAGGCCTAA--AAGGCCTGAGGGAAGGCTCACT
gi|157639 : AATCAAAGGCCTGA--AAGGCCTGAAGGAAGGCTCGCT
gi|157640 : AATCAAAGGTCTGA--AGGGCCTGAGGGAAGGCTCGCT
gi|157641 : ATCAAATGCCTGA--ACGGCCTCAGGGAAGGGTCACTCGTTCACAGTTTTGCCCA----T-----CCTGTCATCTTTCTTTAATTTTTTGT--TAAACTATAATATA
gi|157642 : ATCAAAGGCCTGA--ATGGCCAGAGGGAAGGCGCACTTGTTCT--GTCTTGATCA----T-----CATGTCACCTTTCTTGAATTTCTTGT--CAGAATATAATA
gi|157643 : ATCAAAGATCTGA--ACGGCCTGAGGGAAGACTCATTCGTTCACAGTAT-----G----T-----CATGACGTCTTAGTTTA
gi|157644 : CGTTCAAATTTTCGCCCG----T-----TATGTCGTCTTTCTTTAACGTCTTGT--CAGAATATGACATA
gi|157645 : aaagctgaagttggtctgactttgatgagattgggttcaCCGA--ACGACCTGAGGAAAGGCTCACTCGTTCACAGTTTTGCCCA----T-----CAGTTTGTCTTTCTTTAATTTCTAGT--CAGAATATGATATA
gi|157646 : TTGTTCA--GTTTTGCCCA----T-----TATGTCTATTTTTTTTAA-TTCTTGT--CAGAATATGA
gi|157647 : CAGTTTTGCCCA----TTGACACGTGTCGT-TTACTTTAATTTCTCGT--CAGAATATGAT
gi|157648 : CAGTTTTGCCCACGTGT-----CGTGTCGT-TTACTTTAATTTCTTGT--CAG-ATATGAT
gi|157649 : TTTACCCA----T-----CATGTAGTCTTTCTTTAATTTCTTGT--CAGAATACGA
Alignments
lowQualScore : 33 1 0 2 5555 66666 1 33
lowQualScore : .. . . . .... ..... . ..
lowQualScore : 22 6 4 5 7777 77777 1 99
consensus : AATCAAAGGCCTGA--ACGGCCTGAGGGAAGGCTCGCTCGTTCACAGTTTTGCCCA----T-----CATGTCGTCTTTCTTTAATTTCTTGT--CAGAATATGATATA
Reference ( family-762 ) : AATCAAAGGCCTGA--ACGGCCTGAGGGAAGGCTCGCTCGTTCACAGTTTTGCCCA----T-----CATGTCGTCTTTCTTTAATTTCTTGT--CAGAATATGATATA
gi|157628 : AATCAAAGGCCTGA--ATGGCCTGAGGGAAGGCTCACTCATTCACAGTTTTGCCCA----T-----CATGTCGGCTGTCTTTAATTTCTTGT--CAGAATACGATATA
gi|157629 : AATCAAATGGCTGA--ACGGTCTGAAGGAAGGCTCACTCATTCACAGTTTTGCCCA----T-----CAT---GTCTTTCTTTAATTTTTTGT--CAGAATACGATATA
gi|157630 : AATCAAAGGCCTGA--ACGGCCTGAGGGAAGGCTCACTTATCCA--GTCTTGCCAA----T-----CATGTTGTCTTTCTTTAATTTCTTTT--CAGAATATGATACA
gi|157631 : AATCAAAAGCCTGA--ACTGTCCAGGGGAAGGCTGGCTTGTTCACTGTTTTGCCCA----T-----CATGTCATCTTTCTTTAATTTCATGT--CAGAATATGAGATA
gi|157632 : AATCAAAGACCTTA--ATGGCCAGAGGGAAGGCTCACTCGTTCACAGATTTGCCCA----C-----CATGATGTCTTTCTTTAATTTCTTGTGGC-GACTATAATACA
gi|157633 : AATCAAAGGCCACACAACGGCCTTAGGGAAGGCTTACTCGTTCACAGTTTTGCCCA----G-----CATGTCGT-TTACTTTGAATTCTTGT--CATAATATGATTTA
gi|157634 : AAACAAAGGCCTGA--ACGGCCTGAGGAAAGGCCCACTCGTT
gi|157635 : AATCAAAGGCCTGA--AGGGCCTGAGGGAAGGCTCGCT
gi|157636 : AATCAAAGGCCTGA--AGGGCCTGAGGGAAGGCTCGCT
gi|157637 : AATCAAAGGCCTGA--AGGGCCTGAGGGAAGGCTCGCT
gi|157638 : AATCAAAGGCCTAA--AAGGCCTGAGGGAAGGCTCACT
gi|157639 : AATCAAAGGCCTGA--AAGGCCTGAAGGAAGGCTCGCT
gi|157640 : AATCAAAGGTCTGA--AGGGCCTGAGGGAAGGCTCGCT
gi|157641 : ATCAAATGCCTGA--ACGGCCTCAGGGAAGGGTCACTCGTTCACAGTTTTGCCCA----T-----CCTGTCATCTTTCTTTAATTTTTTGT--TAAACTATAATATA
gi|157642 : ATCAAAGGCCTGA--ATGGCCAGAGGGAAGGCGCACTTGTTCT--GTCTTGATCA----T-----CATGTCACCTTTCTTGAATTTCTTGT--CAGAATATAATA
gi|157643 : ATCAAAGATCTGA--ACGGCCTGAGGGAAGACTCATTCGTTCACAGTAT-----G----T-----CATGACGTCTTAGTTTA
gi|157644 : CGTTCAAATTTTCGCCCG----T-----TATGTCGTCTTTCTTTAACGTCTTGT--CAGAATATGACATA
gi|157645 : aaagctgaagttggtctgactttgatgagattgggttcaCCGA--ACGACCTGAGGAAAGGCTCACTCGTTCACAGTTTTGCCCA----T-----CAGTTTGTCTTTCTTTAATTTCTAGT--CAGAATATGATATA
gi|157646 : TTGTTCA--GTTTTGCCCA----T-----TATGTCTATTTTTTTTAA-TTCTTGT--CAGAATATGA
gi|157647 : CAGTTTTGCCCA----TTGACACGTGTCGT-TTACTTTAATTTCTCGT--CAGAATATGAT
gi|157648 : CAGTTTTGCCCACGTGT-----CGTGTCGT-TTACTTTAATTTCTTGT--CAG-ATATGAT
gi|157649 : TTTACCCA----T-----CATGTAGTCTTTCTTTAATTTCTTGT--CAGAATACGA
blockSeqs : CA C C CGTG TGACA C GG
blockSeqs : . C C . . C .
blockSeqs : . C C . . C .
blockSeqs : . T C . . C .
blockSeqs : . C C . . C .
blockSeqs : . C C . . C .
blockSeqs : . G A . . C .
blockSeqs : . G C . . C .
blockSeqs : . G C . . C .
blockSeqs : . A C . . T .
blockSeqs : . A . . . C .
blockSeqs : . G . . . . .
blockSeqs : . C . . . . .
blockSeqs : . T . . .
blockSeqs : . C
blockSeqs : . C
blockSeqCons :
originalCons : AATCAAAGGCCTGA--ACGGCCTGAGGGAAGGCTCGCTCGTTCACAGTTTTGCCCA----T-----CATGTCGTCTTTCTTTAATTTCTTGT--CAGAATATGATATA
finalCons : AATCAAAGGCCTGA--ACGGCCTGAGGGAAGGCTCGCTCGTTCACAGTTTTGCCCA----T-----CATGTCGTCTTTCTTTAATTTCTTGT--CAGAATATGATATA
Alignments
lowQualScore : 33 1 0 2 5555 66666 1 33
lowQualScore : .. . . . .... ..... . ..
lowQualScore : 22 6 4 5 7777 77777 1 99
consensus : AATCAAAGGCCTGA--ACGGCCTGAGGGAAGGCTCGCTCGTTCACAGTTTTGCCCA----T-----CATGTCGTCTTTCTTTAATTTCTTGT--CAGAATATGATATA
Reference ( family-762 ) : AATCAAAGGCCTGA--ACGGCCTGAGGGAAGGCTCGCTCGTTCACAGTTTTGCCCA----T-----CATGTCGTCTTTCTTTAATTTCTTGT--CAGAATATGATATA
gi|157628 : AATCAAAGGCCTGA--ATGGCCTGAGGGAAGGCTCACTCATTCACAGTTTTGCCCA----T-----CATGTCGGCTGTCTTTAATTTCTTGT--CAGAATACGATATA
gi|157629 : AATCAAATGGCTGA--ACGGTCTGAAGGAAGGCTCACTCATTCACAGTTTTGCCCA----T-----CAT---GTCTTTCTTTAATTTTTTGT--CAGAATACGATATA
gi|157630 : AATCAAAGGCCTGA--ACGGCCTGAGGGAAGGCTCACTTATCCA--GTCTTGCCAA----T-----CATGTTGTCTTTCTTTAATTTCTTTT--CAGAATATGATACA
gi|157631 : AATCAAAAGCCTGA--ACTGTCCAGGGGAAGGCTGGCTTGTTCACTGTTTTGCCCA----T-----CATGTCATCTTTCTTTAATTTCATGT--CAGAATATGAGATA
gi|157632 : AATCAAAGACCTTA--ATGGCCAGAGGGAAGGCTCACTCGTTCACAGATTTGCCCA----C-----CATGATGTCTTTCTTTAATTTCTTGTGGC-GACTATAATACA
gi|157633 : AATCAAAGGCCACACAACGGCCTTAGGGAAGGCTTACTCGTTCACAGTTTTGCCCA----G-----CATGTCGT-TTACTTTGAATTCTTGT--CATAATATGATTTA
gi|157634 : AAACAAAGGCCTGA--ACGGCCTGAGGAAAGGCCCACTCGTT
gi|157635 : AATCAAAGGCCTGA--AGGGCCTGAGGGAAGGCTCGCT
gi|157636 : AATCAAAGGCCTGA--AGGGCCTGAGGGAAGGCTCGCT
gi|157637 : AATCAAAGGCCTGA--AGGGCCTGAGGGAAGGCTCGCT
gi|157638 : AATCAAAGGCCTAA--AAGGCCTGAGGGAAGGCTCACT
gi|157639 : AATCAAAGGCCTGA--AAGGCCTGAAGGAAGGCTCGCT
gi|157640 : AATCAAAGGTCTGA--AGGGCCTGAGGGAAGGCTCGCT
gi|157641 : ATCAAATGCCTGA--ACGGCCTCAGGGAAGGGTCACTCGTTCACAGTTTTGCCCA----T-----CCTGTCATCTTTCTTTAATTTTTTGT--TAAACTATAATATA
gi|157642 : ATCAAAGGCCTGA--ATGGCCAGAGGGAAGGCGCACTTGTTCT--GTCTTGATCA----T-----CATGTCACCTTTCTTGAATTTCTTGT--CAGAATATAATA
gi|157643 : ATCAAAGATCTGA--ACGGCCTGAGGGAAGACTCATTCGTTCACAGTAT-----G----T-----CATGACGTCTTAGTTTA
gi|157644 : CGTTCAAATTTTCGCCCG----T-----TATGTCGTCTTTCTTTAACGTCTTGT--CAGAATATGACATA
gi|157645 : aaagctgaagttggtctgactttgatgagattgggttcaCCGA--ACGACCTGAGGAAAGGCTCACTCGTTCACAGTTTTGCCCA----T-----CAGTTTGTCTTTCTTTAATTTCTAGT--CAGAATATGATATA
gi|157646 : TTGTTCA--GTTTTGCCCA----T-----TATGTCTATTTTTTTTAA-TTCTTGT--CAGAATATGA
gi|157647 : CAGTTTTGCCCA----TTGACACGTGTCGT-TTACTTTAATTTCTCGT--CAGAATATGAT
gi|157648 : CAGTTTTGCCCACGTGT-----CGTGTCGT-TTACTTTAATTTCTTGT--CAG-ATATGAT
gi|157649 : TTTACCCA----T-----CATGTAGTCTTTCTTTAATTTCTTGT--CAGAATACGA