lowQualScore : 1 1111111 2 1111
lowQualScore : 8 6 22 22 5 6666666 9999999 0 2 2 8 2 2 2 0000 777 4444 888
lowQualScore : . . .. .. . ....... ....... . . . . . . . .... ... .... ...
lowQualScore : 3 0 99 99 6 8888888 0000000 1 1 1 8 1 0 0 5555 000 2222 444
consensus : AAGACTTCAAAAGTGTGTA--T--CTGTG-------CGGG------GGGAA-TA-CTTTGAAGGGTTGGCCTGAA-AAAA-ATCCCG-TTCCTGTGAAA-ATCTTAAATATCC---GAAGACCA---GTGACAGAATA----TA--TTGAATGCCCCTCGTA
Reference ( gi|106828 ) : AAGACTTCAAATGTGCGTA--T--CTGCG-------CGGG------AGGAA-TA-CTTTGAAGGGTTGGCCTGAAGAAAA-ATCCCG-TTCCTGTGAAA-ATCTTAAATATCT---GAAGACCA---GTGACAGAATA----TA--CTGAATGCCCCTCGTA
gi|106830 : AAGACTTAAAAAGTGTGTA--T--CTGTG-------CGGG------GGGAAATA-CTTTGAAGGGTTAGCTTGAAAAAAAAATCCCG-TTTCCGTGAAA-ATCTTAAATATCC---GAAGACCA---GTAACAGAATA----TA--TTGAATGCCCCTCATA
gi|106829 : AATACTTAAAAAATGTGTA--T--CTGTG-------CTGG------AG-AA-TA-CTTTGAAGGGTTAGCC-GAAAGAAA-ATCCCG-TTCCTGTGAAA-ATCTTAAATATCC---GAAGACCA---GTGACAGAATA----TA--TTAAATGCCCCTCGTA
gi|106832 : AAGACTTCAAAAGTGTGTA--T--CTGTG-------CAGG------GGGAA-TA-CTTTGAAGGGTTGGCCTGAA-AATA-ATCCCA-TTCCTGTGAAA-ATCTTAAATATCC---GAAGACCA---GCAACAGAATA----TAATTTGAATGCCC
gi|106831 : AAGACTTCAAAAGTATGTA--T--CTTTG-------CGGG-------GGAA-CA-CTTTGAAAGGTTGGCCTTAA----A-ATTCCG-TTCCTGTGAAA-ATCTTAAATATTC---GAAGACCA---GTGACAGAATA----TA--TTGAATGCCCCTCGTA
gi|106835 : AAGACTTCAAAAGTATGTA--T--CTGTG-------CGGG------GGGAA-CA-ATTTGAAGGGTTGGCCTGAA-AAAA-ATCCCG-TTCTTGTAAAA-ATCTTAAATAGCC---GAAGACCA---GTTACATAATA----TA--TTAAATGCCCCTTGTA
gi|106836 : AAGTCTTCAAAAGTGTGTT--T--CTGTG-------CGGG-------GGAA-TA-CTTTGAAGGGTTGGCCTGAA-AAAA-GTCCCG-TTTATGTGAAA-ATCATAAATATTT---AGTGACCA---GTGACAGAATA----TA--TTGAATGCCCCTCGTA
gi|106834 : AAGTCTTCAAAAGTGTGTA--A--TTGTG-------CGGG-------GTAA-TA-TTTTGAAGGGTTGGCCTGAA-AAAA-ATCCCG-TTCCTGTGAAA-ATCTTTAATAACC---GAAGACTA---GTGACAGAGTA----TA--TTGAATGCCCCTCGTA
gi|106833 : AAGACTTCAAAAATGTGTA--C--CTGGG-------CGGGTGGTGGGGGGA-TA-CTTTGAAGGGTTGGCCTGAC-AAAA-ATCACG-TTCCTGTGAAA-ATCTTAAATATCC---GAATACCA---GTGACAGAATT----TA--TTGAATGTCCCTCGTA
gi|106837 : AATACTTCAAAAGTGTGTA--T--CTGTG-------CAGG------AGGAA-TA-CTTTGAAGGGTTGGCCTGAA-AAAA-ATCCTG-TTCTTGTGAAA-ATCTTTAATATCC---AAAGACCA---GTGAGCGAATAATTTTA--TTGAATGTTCCTCATA
gi|106838 : AATACTTCAAAAGTGTGTA--TTTCTGCGAGTGGGGTGAG------AGGA--TA-CTTTGAAGGGTTGACCTGAA-AAAA-ATCCCG-TTCCTGTGAAA-ATCTTAAATATGC---GAAGACCA---TTGACAGATTA----TA--TTGATTGCCCCTCATA
gi|106840 : AATACTTCAGAAGTGTATAGAT--TTGTG-------CGGG------GGGAA-TA-CTTTGAAGGGTTGGTCTGA--AAAA-ATCCCG-TTCCTGTG---------AAATATCC---GTAGACCA---GTAACAGAATT----TA--TTGAATGCCCCTCGTA
gi|106839 : AAGTCTTCAAAAGTGTGTA--T--CTGTG-------CGGG-------GCAA-TAGTTTTAAATGGTCGGCCTAAATAAA---TCCCG-TACCTGTTGAA-ATCTTAAATATCC---GAAGACCA---GTGACAGGATA----TA--TTGCATACCACTCGTA
gi|106841 : AAGACTTCAGAAGAGTGTA--T--CTGTT-------CGGG------AG-AA-TA-CTTTAAAGG-CAGGTCTTAA--AAA-ATCCAG-TTTGTGTGGAA-ATCTTAAATATCG---GAAGACCA---GTGACAGGTTT----TA--TTGAATGCCACTCATA
gi|106843 : AAGACCGAAAA-GTGTGTA--T--CAGTG-------CGGA------TGAAA-TA-CTTGGAAGGGTTTGCCTGAA--AAA-ATCTCA-ATCCTGTGAAA-TTCTTAAATATTA---GTAGACTA---GTAACAGAGTA----TA--TTGAAAGACCCACGTA
gi|106842 : AAGACTTCACAAGTATGTT--T--ATATG-------CAGA------GGGGA-TA-CATTGAAGGGT-------------A-ATCC-A-TTCCTGTGAAA-CTCTTCAATATCC---AAAGACCA---GTGACAGAATA----TA--TTTGATGCCCCTCGTA
gi|106844 : AATACTTCAAAAGTGTGTA--C--CTGTG-------CGGG------TGGAA-TA-CTTTGATGGGTTGGCCTGA---------------------GAAA-A--------ATC--------ACCT---GTGACAGAATA----TA--CTGAATGCCCCTCGTA
gi|106845 : ACTTCAAAAGTGTGTA--T--CTGTG-------TGGG------GGTAA-TA-CCTTGAAGGGTTTGCCTGAAAAAAA-AAACCGGTTCCTGTCAAA-ATCTTAAATATCC---GAAGACAA---GTAACAGAATA----TA--TTGAATGCCCCTCGTA
gi|106846 : CTTCAAAAGTATGTA--T--CTGTT-------CATG------GGGAA-TA-CTTTAAAAGGTTG
gi|106847 : A--T--TTGTG-------CGGG-------GGAA-TA-CTTTGAAGGGTTAGCCTAAA--AAA-ATCC-G-TTCCTGTGAAA-ATCTTAAATATCC---GAAGACTA---GTGACAGAATA----TA--ATGAATGTCCCTCGTA
gi|106848 : AAAA-ATCCTG-TTCCTGTGAAA-ATCTTAAA-ATCC---AAAAAC
gi|106849 : G-TTCTTATGCAACATTTT---T-TCTACAGAAGGCCATTAGTGACAGAATT----TA--TTGAATGCCCCTCGCA
gi|106850 : ---GAAGGCCACTAGTGACAGAATT----TA--TTGAATGCCCCTCGTA
Alignments
lowQualScore : 111111
lowQualScore : 2 22 333 555555 222222 2 2 0 2 22 22 1 1 666 4444 22
lowQualScore : . .. ... ...... ...... . . . . .. .. . . ... .... ..
lowQualScore : 1 88 555 888888 111111 0 0 1 0 88 88 6 9 777 0000 66
consensus : AAGACTTC-AAAAGTGTGTA--TCTGTGCG---GG------GG-----GAA-TA-CTTTGAAGGGTTGGCCTGAA-AA--AAAT--CCCGTTCCTGTGAAA-ATCTTAAATATCCGAAGACCA---GTGACAGAATA----TA--TTGAATGCCCCTCGTA
Reference ( family-747 ) : AAGACTTC-AAAAGTGTGTA--TCTGTGCG---GG------GG-----GAA-TA-CTTTGAAGGGTTGGCCTGAA-AA--AAAT--CCCGTTCCTGTGAAA-ATCTTAAATATCCGAAGACCA---GTGACAGAATA----TA--TTGAATGCCCCTCGTA
gi|106828 : AAGACTTC-AAATGTGCGTA--TCTGCGCG---GG------AG-----GAA-TA-CTTTGAAGGGTTGGCCTGAAGAA--AAAT--CCCGTTCCTGTGAAA-ATCTTAAATATCTGAAGACCA---GTGACAGAATA----TA--CTGAATGCCCCTCGTA
gi|106829 : AATACTTA-AAAAATGTGTA--TCTGTGCT---GG------AG------AA-TA-CTTTGAAGGGTTAGCCGAAA-GA--AAAT--CCCGTTCCTGTGAAA-ATCTTAAATATCCGAAGACCA---GTGACAGAATA----TA--TTAAATGCCCCTCGTA
gi|106830 : AAGACTTA-AAAAGTGTGTA--TCTGTGCG---GG------GG-----GAAATA-CTTTGAAGGGTTAGCTTGAA-AAAAAAAT--CCCGTTTCCGTGAAA-ATCTTAAATATCCGAAGACCA---GTAACAGAATA----TA--TTGAATGCCCCTCATA
gi|106831 : AAGACTTC-AAAAGTATGTA--TCTTTGCG---GG------GG------AA-CA-CTTTGAAAGGTTGGCCTTAA-AA-----T--TCCGTTCCTGTGAAA-ATCTTAAATATTCGAAGACCA---GTGACAGAATA----TA--TTGAATGCCCCTCGTA
gi|106832 : AAGACTTC-AAAAGTGTGTA--TCTGTGCA---GG------GG-----GAA-TA-CTTTGAAGGGTTGGCCTGAA-AA--TAAT--CCCATTCCTGTGAAA-ATCTTAAATATCCGAAGACCA---GCAACAGAATA----TAATTTGAATGCCC
gi|106833 : AAGACTTC-AAAAATGTGTA--CCTGGGCG---GGTGGTGGGG-----GGA-TA-CTTTGAAGGGTTGGCCTGAC-AA--AAAT--CACGTTCCTGTGAAA-ATCTTAAATATCCGAATACCA---GTGACAGAATT----TA--TTGAATGTCCCTCGTA
gi|106834 : AAGTCTTC-AAAAGTGTGTA--ATTGTGCG---GG------GT------AA-TA-TTTTGAAGGGTTGGCCTGAA-AA--AAAT--CCCGTTCCTGTGAAA-ATCTTTAATAACCGAAGACTA---GTGACAGAGTA----TA--TTGAATGCCCCTCGTA
gi|106835 : AAGACTTC-AAAAGTATGTA--TCTGTGCG---GG------GG-----GAA-CA-ATTTGAAGGGTTGGCCTGAA-AA--AAAT--CCCGTTCTTGTAAAA-ATCTTAAATAGCCGAAGACCA---GTTACATAATA----TA--TTAAATGCCCCTTGTA
gi|106836 : AAGTCTTC-AAAAGTGTGTT--TCTGTGCG---GG------G------GAA-TA-CTTTGAAGGGTTGGCCTGAA-AA--AAGT--CCCGTTTATGTGAAA-ATCATAAATATTTAGTGACCA---GTGACAGAATA----TA--TTGAATGCCCCTCGTA
gi|106837 : AATACTTC-AAAAGTGTGTA--TCTGTGCA---GG------AG-----GAA-TA-CTTTGAAGGGTTGGCCTGAA-AA--AAAT--CCTGTTCTTGTGAAA-ATCTTTAATATCCAAAGACCA---GTGAGCGAATAATTTTA--TTGAATGTTCCTCATA
gi|106838 : AATACTTC-AAAAGTGTGTA--TTTCTGCGAGTGG------GGTGAGAGGA-TA-CTTTGAAGGGTTGACCTGAA-AA--AAAT--CCCGTTCCTGTGAAA-ATCTTAAATATGCGAAGACCA---TTGACAGATTA----TA--TTGATTGCCCCTCATA
gi|106839 : AAGTCTTC-AAAAGTGTGTA--TCTGTGCG---GG------GC------AA-TAGTTTTAAATGGTCGGCCT-AA-AT--AAAT--CCCGTACCTGTTGAA-ATCTTAAATATCCGAAGACCA---GTGACAGGATA----TA--TTGCATACCACTCGTA
gi|106840 : AATACTTC-AGAAGTGTATAGATTTGTGCG---GG------GG-----GAA-TA-CTTTGAAGGGTTGGTCTG-A-AA--AAAT--CCCGTTCCTGTG---------AAATATCCGTAGACCA---GTAACAGAATT----TA--TTGAATGCCCCTCGTA
gi|106841 : AAGACTTC-AGAAGAGTGTA--TCTGTTCG---GG------AG------AA-TA-CTTTAAAGG-CAGGTCTTAA-AA--AA-T--CCAGTTTGTGTGGAA-ATCTTAAATATCGGAAGACCA---GTGACAGGTTT----TA--TTGAATGCCACTCATA
gi|106842 : AAGACTTC-ACAAGTATGTT--TATATGCA---GA------GG-----GGA-TA-CATTGAAGGGT---------------AAT--CC-ATTCCTGTGAAA-CTCTTCAATATCCAAAGACCA---GTGACAGAATA----TA--TTTGATGCCCCTCGTA
gi|106843 : AAGAC--CGAAAAGTGTGTA--TCAGTGCG---GA------TG-----AAA-TA-CTTGGAAGGGTTTGCCTGAA-AA--AA-T--CTCAATCCTGTGAAA-TTCTTAAATATTAGTAGACTA---GTAACAGAGTA----TA--TTGAAAGACCCACGTA
gi|106844 : AATACTTC-AAAAGTGTGTA--CCTGTGCG---GG------TG-----GAA-TA-CTTTGATGGGTTGGCCTGAG-AA--AAAT--CA----CCTGTGA----------------------CA---G------AATA----TA--CTGAATGCCCCTCGTA
gi|106845 : ACTTC-AAAAGTGTGTA--TCTGTGTG---GG------GG-----TAA-TA-CCTTGAAGGGTTTGCCTGAA-AA--AAAAAACCGGTTCCTGTCAAA-ATCTTAAATATCCGAAGACAA---GTAACAGAATA----TA--TTGAATGCCCCTCGTA
gi|106846 : CTTC-AAAAGTATGTA--TCTGTTCA---TG------GG-----GAA-TA-CTTTAAAAGGTTG
gi|106847 : A--TTTGTGCG---GG------GG------AA-TA-CTTTGAAGGGTTAGCCT-AA-AA--AAAT--CC-GTTCCTGTGAAA-ATCTTAAATATCCGAAGACTA---GTGACAGAATA----TA--ATGAATGTCCCTCGTA
gi|106848 : -AA--AAAT--CCTGTTCCTGTGAAA-ATCTTAAA-ATCCAAAAAC
gi|106849 : GTTCTTATGCAACATTTTTTCTA-CAGAAGGCCATTAGTGACAGAATT----TA--TTGAATGCCCCTCGCA
gi|106850 : GAAGGCCACTAGTGACAGAATT----TA--TTGAATGCCCCTCGTA
Alignments
lowQualScore : 111111
lowQualScore : 2 22 333 555555 222222 2 2 0 2 22 22 1 1 666 4444 22
lowQualScore : . .. ... ...... ...... . . . . .. .. . . ... .... ..
lowQualScore : 1 88 555 888888 111111 0 0 1 0 88 88 6 9 777 0000 66
consensus : AAGACTTC-AAAAGTGTGTA--TCTGTGCG---GG------GG-----GAA-TA-CTTTGAAGGGTTGGCCTGAA-AA--AAAT--CCCGTTCCTGTGAAA-ATCTTAAATATCCGAAGACCA---GTGACAGAATA----TA--TTGAATGCCCCTCGTA
Reference ( family-747 ) : AAGACTTC-AAAAGTGTGTA--TCTGTGCG---GG------GG-----GAA-TA-CTTTGAAGGGTTGGCCTGAA-AA--AAAT--CCCGTTCCTGTGAAA-ATCTTAAATATCCGAAGACCA---GTGACAGAATA----TA--TTGAATGCCCCTCGTA
gi|106828 : AAGACTTC-AAATGTGCGTA--TCTGCGCG---GG------AG-----GAA-TA-CTTTGAAGGGTTGGCCTGAAGAA--AAAT--CCCGTTCCTGTGAAA-ATCTTAAATATCTGAAGACCA---GTGACAGAATA----TA--CTGAATGCCCCTCGTA
gi|106829 : AATACTTA-AAAAATGTGTA--TCTGTGCT---GG------AG------AA-TA-CTTTGAAGGGTTAGCCGAAA-GA--AAAT--CCCGTTCCTGTGAAA-ATCTTAAATATCCGAAGACCA---GTGACAGAATA----TA--TTAAATGCCCCTCGTA
gi|106830 : AAGACTTA-AAAAGTGTGTA--TCTGTGCG---GG------GG-----GAAATA-CTTTGAAGGGTTAGCTTGAA-AAAAAAAT--CCCGTTTCCGTGAAA-ATCTTAAATATCCGAAGACCA---GTAACAGAATA----TA--TTGAATGCCCCTCATA
gi|106831 : AAGACTTC-AAAAGTATGTA--TCTTTGCG---GG------GG------AA-CA-CTTTGAAAGGTTGGCCTTAA-AA-----T--TCCGTTCCTGTGAAA-ATCTTAAATATTCGAAGACCA---GTGACAGAATA----TA--TTGAATGCCCCTCGTA
gi|106832 : AAGACTTC-AAAAGTGTGTA--TCTGTGCA---GG------GG-----GAA-TA-CTTTGAAGGGTTGGCCTGAA-AA--TAAT--CCCATTCCTGTGAAA-ATCTTAAATATCCGAAGACCA---GCAACAGAATA----TAATTTGAATGCCC
gi|106833 : AAGACTTC-AAAAATGTGTA--CCTGGGCG---GGTGGTGGGG-----GGA-TA-CTTTGAAGGGTTGGCCTGAC-AA--AAAT--CACGTTCCTGTGAAA-ATCTTAAATATCCGAATACCA---GTGACAGAATT----TA--TTGAATGTCCCTCGTA
gi|106834 : AAGTCTTC-AAAAGTGTGTA--ATTGTGCG---GG------GT------AA-TA-TTTTGAAGGGTTGGCCTGAA-AA--AAAT--CCCGTTCCTGTGAAA-ATCTTTAATAACCGAAGACTA---GTGACAGAGTA----TA--TTGAATGCCCCTCGTA
gi|106835 : AAGACTTC-AAAAGTATGTA--TCTGTGCG---GG------GG-----GAA-CA-ATTTGAAGGGTTGGCCTGAA-AA--AAAT--CCCGTTCTTGTAAAA-ATCTTAAATAGCCGAAGACCA---GTTACATAATA----TA--TTAAATGCCCCTTGTA
gi|106836 : AAGTCTTC-AAAAGTGTGTT--TCTGTGCG---GG------G------GAA-TA-CTTTGAAGGGTTGGCCTGAA-AA--AAGT--CCCGTTTATGTGAAA-ATCATAAATATTTAGTGACCA---GTGACAGAATA----TA--TTGAATGCCCCTCGTA
gi|106837 : AATACTTC-AAAAGTGTGTA--TCTGTGCA---GG------AG-----GAA-TA-CTTTGAAGGGTTGGCCTGAA-AA--AAAT--CCTGTTCTTGTGAAA-ATCTTTAATATCCAAAGACCA---GTGAGCGAATAATTTTA--TTGAATGTTCCTCATA
gi|106838 : AATACTTC-AAAAGTGTGTA--TTTCTGCGAGTGG------GGTGAGAGGA-TA-CTTTGAAGGGTTGACCTGAA-AA--AAAT--CCCGTTCCTGTGAAA-ATCTTAAATATGCGAAGACCA---TTGACAGATTA----TA--TTGATTGCCCCTCATA
gi|106839 : AAGTCTTC-AAAAGTGTGTA--TCTGTGCG---GG------GC------AA-TAGTTTTAAATGGTCGGCCT-AA-AT--AAAT--CCCGTACCTGTTGAA-ATCTTAAATATCCGAAGACCA---GTGACAGGATA----TA--TTGCATACCACTCGTA
gi|106840 : AATACTTC-AGAAGTGTATAGATTTGTGCG---GG------GG-----GAA-TA-CTTTGAAGGGTTGGTCTG-A-AA--AAAT--CCCGTTCCTGTG---------AAATATCCGTAGACCA---GTAACAGAATT----TA--TTGAATGCCCCTCGTA
gi|106841 : AAGACTTC-AGAAGAGTGTA--TCTGTTCG---GG------AG------AA-TA-CTTTAAAGG-CAGGTCTTAA-AA--AA-T--CCAGTTTGTGTGGAA-ATCTTAAATATCGGAAGACCA---GTGACAGGTTT----TA--TTGAATGCCACTCATA
gi|106842 : AAGACTTC-ACAAGTATGTT--TATATGCA---GA------GG-----GGA-TA-CATTGAAGGGT---------------AAT--CC-ATTCCTGTGAAA-CTCTTCAATATCCAAAGACCA---GTGACAGAATA----TA--TTTGATGCCCCTCGTA
gi|106843 : AAGAC--CGAAAAGTGTGTA--TCAGTGCG---GA------TG-----AAA-TA-CTTGGAAGGGTTTGCCTGAA-AA--AA-T--CTCAATCCTGTGAAA-TTCTTAAATATTAGTAGACTA---GTAACAGAGTA----TA--TTGAAAGACCCACGTA
gi|106844 : AATACTTC-AAAAGTGTGTA--CCTGTGCG---GG------TG-----GAA-TA-CTTTGATGGGTTGGCCTGAG-AA--AAAT--CA----CCTGTGA----------------------CA---G------AATA----TA--CTGAATGCCCCTCGTA
gi|106845 : ACTTC-AAAAGTGTGTA--TCTGTGTG---GG------GG-----TAA-TA-CCTTGAAGGGTTTGCCTGAA-AA--AAAAAACCGGTTCCTGTCAAA-ATCTTAAATATCCGAAGACAA---GTAACAGAATA----TA--TTGAATGCCCCTCGTA
gi|106846 : CTTC-AAAAGTATGTA--TCTGTTCA---TG------GG-----GAA-TA-CTTTAAAAGGTTG
gi|106847 : A--TTTGTGCG---GG------GG------AA-TA-CTTTGAAGGGTTAGCCT-AA-AA--AAAT--CC-GTTCCTGTGAAA-ATCTTAAATATCCGAAGACTA---GTGACAGAATA----TA--ATGAATGTCCCTCGTA
gi|106848 : -AA--AAAT--CCTGTTCCTGTGAAA-ATCTTAAA-ATCCAAAAAC
gi|106849 : GTTCTTATGCAACATTTTTTCTA-CAGAAGGCCATTAGTGACAGAATT----TA--TTGAATGCCCCTCGCA
gi|106850 : GAAGGCCACTAGTGACAGAATT----TA--TTGAATGCCCCTCGTA
blockSeqs : G GA AGT TGGTGG TGAGAG A G . AA AA C C TTA ATTT AT
blockSeqs : . . . . G . . . . . C . CTA . .
blockSeqs : . . . . G . . . . . C . . . .
blockSeqs : . . . . G . . . . . C . . . .
blockSeqs : . . . . G . . . . . C . . . .
blockSeqs : . . . . G . . . . . C . . . .
blockSeqs : . . . . G . . . . . C . . . .
blockSeqs : . . . . G . . . . . C . . . .
blockSeqs : . . . . G . . . . . T . . . .
blockSeqs : . . . . A . . . . . C . . . .
blockSeqs : . . . . G . . . . . C . . . .
blockSeqs : . . . . T . . . . . C . . . .
blockSeqs : . . . . G . . . . . A . . . .
blockSeqs : . . . . . . . . . . C . . . .
blockSeqs : . . . . . . . . . . G . . . .
blockSeqs : . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : AAGACTTC-AAAAGTGTGTA--TCTGTGCG---GG------GG-----GAA-TA-CTTTGAAGGGTTGGCCTGAA-AA--AAAT--CCCGTTCCTGTGAAA-ATCTTAAATATCCGAAGACCA---GTGACAGAATA----TA--TTGAATGCCCCTCGTA
finalCons : AAGACTTC-AAAAGTGTGTA--TCTGTGCG---GG------GG-----GAA-TA-CTTTGAAGGGTTGGCCTGAA-AA--AAAT--CCCGTTCCTGTGAAA-ATCTTAAATATCCGAAGACCA---GTGACAGAATA----TA--TTGAATGCCCCTCGTA
Alignments
lowQualScore : 111111
lowQualScore : 2 22 333 555555 222222 2 2 0 2 22 22 1 1 666 4444 22
lowQualScore : . .. ... ...... ...... . . . . .. .. . . ... .... ..
lowQualScore : 1 88 555 888888 111111 0 0 1 0 88 88 6 9 777 0000 66
consensus : AAGACTTC-AAAAGTGTGTA--TCTGTGCG---GG------GG-----GAA-TA-CTTTGAAGGGTTGGCCTGAA-AA--AAAT--CCCGTTCCTGTGAAA-ATCTTAAATATCCGAAGACCA---GTGACAGAATA----TA--TTGAATGCCCCTCGTA
Reference ( family-747 ) : AAGACTTC-AAAAGTGTGTA--TCTGTGCG---GG------GG-----GAA-TA-CTTTGAAGGGTTGGCCTGAA-AA--AAAT--CCCGTTCCTGTGAAA-ATCTTAAATATCCGAAGACCA---GTGACAGAATA----TA--TTGAATGCCCCTCGTA
gi|106828 : AAGACTTC-AAATGTGCGTA--TCTGCGCG---GG------AG-----GAA-TA-CTTTGAAGGGTTGGCCTGAAGAA--AAAT--CCCGTTCCTGTGAAA-ATCTTAAATATCTGAAGACCA---GTGACAGAATA----TA--CTGAATGCCCCTCGTA
gi|106829 : AATACTTA-AAAAATGTGTA--TCTGTGCT---GG------AG------AA-TA-CTTTGAAGGGTTAGCCGAAA-GA--AAAT--CCCGTTCCTGTGAAA-ATCTTAAATATCCGAAGACCA---GTGACAGAATA----TA--TTAAATGCCCCTCGTA
gi|106830 : AAGACTTA-AAAAGTGTGTA--TCTGTGCG---GG------GG-----GAAATA-CTTTGAAGGGTTAGCTTGAA-AAAAAAAT--CCCGTTTCCGTGAAA-ATCTTAAATATCCGAAGACCA---GTAACAGAATA----TA--TTGAATGCCCCTCATA
gi|106831 : AAGACTTC-AAAAGTATGTA--TCTTTGCG---GG------GG------AA-CA-CTTTGAAAGGTTGGCCTTAA-AA-----T--TCCGTTCCTGTGAAA-ATCTTAAATATTCGAAGACCA---GTGACAGAATA----TA--TTGAATGCCCCTCGTA
gi|106832 : AAGACTTC-AAAAGTGTGTA--TCTGTGCA---GG------GG-----GAA-TA-CTTTGAAGGGTTGGCCTGAA-AA--TAAT--CCCATTCCTGTGAAA-ATCTTAAATATCCGAAGACCA---GCAACAGAATA----TAATTTGAATGCCC
gi|106833 : AAGACTTC-AAAAATGTGTA--CCTGGGCG---GGTGGTGGGG-----GGA-TA-CTTTGAAGGGTTGGCCTGAC-AA--AAAT--CACGTTCCTGTGAAA-ATCTTAAATATCCGAATACCA---GTGACAGAATT----TA--TTGAATGTCCCTCGTA
gi|106834 : AAGTCTTC-AAAAGTGTGTA--ATTGTGCG---GG------GT------AA-TA-TTTTGAAGGGTTGGCCTGAA-AA--AAAT--CCCGTTCCTGTGAAA-ATCTTTAATAACCGAAGACTA---GTGACAGAGTA----TA--TTGAATGCCCCTCGTA
gi|106835 : AAGACTTC-AAAAGTATGTA--TCTGTGCG---GG------GG-----GAA-CA-ATTTGAAGGGTTGGCCTGAA-AA--AAAT--CCCGTTCTTGTAAAA-ATCTTAAATAGCCGAAGACCA---GTTACATAATA----TA--TTAAATGCCCCTTGTA
gi|106836 : AAGTCTTC-AAAAGTGTGTT--TCTGTGCG---GG------G------GAA-TA-CTTTGAAGGGTTGGCCTGAA-AA--AAGT--CCCGTTTATGTGAAA-ATCATAAATATTTAGTGACCA---GTGACAGAATA----TA--TTGAATGCCCCTCGTA
gi|106837 : AATACTTC-AAAAGTGTGTA--TCTGTGCA---GG------AG-----GAA-TA-CTTTGAAGGGTTGGCCTGAA-AA--AAAT--CCTGTTCTTGTGAAA-ATCTTTAATATCCAAAGACCA---GTGAGCGAATAATTTTA--TTGAATGTTCCTCATA
gi|106838 : AATACTTC-AAAAGTGTGTA--TTTCTGCGAGTGG------GGTGAGAGGA-TA-CTTTGAAGGGTTGACCTGAA-AA--AAAT--CCCGTTCCTGTGAAA-ATCTTAAATATGCGAAGACCA---TTGACAGATTA----TA--TTGATTGCCCCTCATA
gi|106839 : AAGTCTTC-AAAAGTGTGTA--TCTGTGCG---GG------GC------AA-TAGTTTTAAATGGTCGGCCT-AA-AT--AAAT--CCCGTACCTGTTGAA-ATCTTAAATATCCGAAGACCA---GTGACAGGATA----TA--TTGCATACCACTCGTA
gi|106840 : AATACTTC-AGAAGTGTATAGATTTGTGCG---GG------GG-----GAA-TA-CTTTGAAGGGTTGGTCTG-A-AA--AAAT--CCCGTTCCTGTG---------AAATATCCGTAGACCA---GTAACAGAATT----TA--TTGAATGCCCCTCGTA
gi|106841 : AAGACTTC-AGAAGAGTGTA--TCTGTTCG---GG------AG------AA-TA-CTTTAAAGG-CAGGTCTTAA-AA--AA-T--CCAGTTTGTGTGGAA-ATCTTAAATATCGGAAGACCA---GTGACAGGTTT----TA--TTGAATGCCACTCATA
gi|106842 : AAGACTTC-ACAAGTATGTT--TATATGCA---GA------GG-----GGA-TA-CATTGAAGGGT---------------AAT--CC-ATTCCTGTGAAA-CTCTTCAATATCCAAAGACCA---GTGACAGAATA----TA--TTTGATGCCCCTCGTA
gi|106843 : AAGAC--CGAAAAGTGTGTA--TCAGTGCG---GA------TG-----AAA-TA-CTTGGAAGGGTTTGCCTGAA-AA--AA-T--CTCAATCCTGTGAAA-TTCTTAAATATTAGTAGACTA---GTAACAGAGTA----TA--TTGAAAGACCCACGTA
gi|106844 : AATACTTC-AAAAGTGTGTA--CCTGTGCG---GG------TG-----GAA-TA-CTTTGATGGGTTGGCCTGAG-AA--AAAT--CA----CCTGTGA----------------------CA---G------AATA----TA--CTGAATGCCCCTCGTA
gi|106845 : ACTTC-AAAAGTGTGTA--TCTGTGTG---GG------GG-----TAA-TA-CCTTGAAGGGTTTGCCTGAA-AA--AAAAAACCGGTTCCTGTCAAA-ATCTTAAATATCCGAAGACAA---GTAACAGAATA----TA--TTGAATGCCCCTCGTA
gi|106846 : CTTC-AAAAGTATGTA--TCTGTTCA---TG------GG-----GAA-TA-CTTTAAAAGGTTG
gi|106847 : A--TTTGTGCG---GG------GG------AA-TA-CTTTGAAGGGTTAGCCT-AA-AA--AAAT--CC-GTTCCTGTGAAA-ATCTTAAATATCCGAAGACTA---GTGACAGAATA----TA--ATGAATGTCCCTCGTA
gi|106848 : -AA--AAAT--CCTGTTCCTGTGAAA-ATCTTAAA-ATCCAAAAAC
gi|106849 : GTTCTTATGCAACATTTTTTCTA-CAGAAGGCCATTAGTGACAGAATT----TA--TTGAATGCCCCTCGCA
gi|106850 : GAAGGCCACTAGTGACAGAATT----TA--TTGAATGCCCCTCGTA