lowQualScore : 1 1111111
lowQualScore : 5 2 4 8888888 3333 7 1111111
lowQualScore : . . . ....... .... . .......
lowQualScore : 9 3 3 8888888 9999 2 0000000
consensus : GGAAACAGCACTTTGTAAGAATGTATCNATCGACGC-----CATG----TTGTAAATCTCAACG------AACTGCGAATGTAACGATTAATCT
Reference ( gi|13338 ) : GGAAACTGCACTTTGTAAGAATGTATCAATCAACAT-----CATG----TTGTAAATCCCAACA------AACTGCGAATGTAACGATTAATCT
gi|13337 : GGAAACAGCACTTTGTAAGAATGTATCAATCAACCA-----CATG----TTGTAAATCTCAACA------AACTGCAAATGTAACAATTAATCT
gi|13340 : GGAAACAGCACTTTGTAAGAATGTATCAATCGACGT-----CATG----TTGTAAATCTCAACAAACTTGAACTACGGATGTAACGATTAATTT
gi|13339 : GGAAGCAGCACTTTATAAGAATGTATCAATCAACGC-----CATG----TTGTAAATCTCGATG------AACTGCAAATGTAACGATTGATCT
gi|13342 : GAAAACAGCACCTTGTAAAAATGTATCAATCAATAT-----AA-A----TTGTAAATCTCAACA------AACTGCAAATGTAACAATTAATCT
gi|13341 : GGAAACAGCACTTTGTAAGAATGTATCAATCGCCGT-----GATG----CGGTACATCTCAACG------AACTGCAAATGTAACGATTAATCT
gi|13343 : GGAAACAGCATTTTGTAAGACTATATCAATCGACGT-----CAT------TGTAAATCGCAACG------AACTGCGAATGTACCGATTAATCT
gi|13345 : GGAAACCGCATTTTGTATGAATGTAACAATCGACGT-----CATG----TTGTAAATCGTAACG------AACTGCGAATGTAACG
gi|13344 : GGAAACAGCACTTTGTAATAATATATCAA---ACGC-----CATG----CTGTAAATCTCAACT------AACTACAAATGTAATTATTAATCT
gi|13346 : GAAACAGCATTTTGTAAGAATTTATCGATCGACGT-----CATG----TTGTAAATCACAACG------AACTGTGAATGTAACAATTAATC
gi|13347 : GAAACAACACTTTGTA--------TCAATAGACGT-----CATGAACATTGTAAATCTCAAAG------AACTG--AATGTAACGATTAATCT
gi|13349 : CATCTTATAAGAAATTATTAATCGACCC-----CAAG----TTGTAAATCTCATCG------AACTGCGAATGAAATTATTAATCT
gi|13350 : aaTTATAATAATGTATCTATCGACGC-----CATG----TTGTAAATTTCAACG------AACTGCGAATGTAACGATTAATCT
gi|13351 : TTGTAAAAATATATTTATCGACAC-----AATA----GTGTAAATTTCTACG------AACTGCAAAAGTAACGATAACTCT
gi|13352 : GAATTTATCTATCGACGC-----CATG----TTGTAAATTTCA-CA------AACTGCAAATGTAACGATTAATCT
gi|13353 : GAGTGTATCGATCGGCGT-----CATG----TTGTTAATTTCAACG------AACTACAAATCTAACGATTAATCT
gi|13354 : GAATGTATCTATCGACATGACATCATG----TTGTAACTTTCAAC----------TCCGAAAGTAACGATTAATCT
gi|13355 : GAGTGTATCTATCGACAT-----CATG----TTGTAAATTTCAATG------AAATACGAGTGTAA
gi|13357 : AGTGTATCTATCGACGA-----CATC----TTGTAAATTTAAACG------AGCTACGAATGTAACGATTAATCT
gi|13356 : AATGTAACTATAGACGC-----CATG----GTGTAAATTTAAACG------AACTGCGAATGTAACGAATAATCT
gi|13348 : AAAGTATCTATTGATGC-----CATG----TTGTAAAGTTTAACC------AGCTGCGAATGCAACAATTTATCT
gi|13358 : gagataacatcgtATTTATCAATCGACGC-----CATT----TTGTAAATCTCAACG------AAATGCGAATGTAATATTTAATC
gi|13359 : ACGC-----CATG----TTGTAAATTTCAACG------AACTTCGAATGTAACGATTAATTT
Alignments
lowQualScore : 1 44444 3333 555555
lowQualScore : . ..... .... ......
lowQualScore : 0 33333 7777 000000
consensus : GGAAACAGCACTTTGTAAGAATGTATCNATCGACGC-----CATG----TTGTAAATCTCAAC------GAACTGCGAATGTAACGATTAATCT
Reference ( family-745 ) : GGAAACAGCACTTTGTAAGAATGTATCNATCGACGC-----CATG----TTGTAAATCTCAAC------GAACTGCGAATGTAACGATTAATCT
gi|13337 : GGAAACAGCACTTTGTAAGAATGTATCAATCAACCA-----CATG----TTGTAAATCTCAAC------AAACTGCAAATGTAACAATTAATCT
gi|13338 : GGAAACTGCACTTTGTAAGAATGTATCAATCAACAT-----CATG----TTGTAAATCCCAAC------AAACTGCGAATGTAACGATTAATCT
gi|13339 : GGAAGCAGCACTTTATAAGAATGTATCAATCAACGC-----CATG----TTGTAAATCTCGAT------GAACTGCAAATGTAACGATTGATCT
gi|13340 : GGAAACAGCACTTTGTAAGAATGTATCAATCGACGT-----CATG----TTGTAAATCTCAACAAACTTGAACTACGGATGTAACGATTAATTT
gi|13341 : GGAAACAGCACTTTGTAAGAATGTATCAATCGCCGT-----GATG----CGGTACATCTCAAC------GAACTGCAAATGTAACGATTAATCT
gi|13342 : GAAAACAGCACCTTGTAAAAATGTATCAATCAATAT-----AA-A----TTGTAAATCTCAAC------AAACTGCAAATGTAACAATTAATCT
gi|13343 : GGAAACAGCATTTTGTAAGACTATATCAATCGACGT-----CAT------TGTAAATCGCAAC------GAACTGCGAATGTACCGATTAATCT
gi|13344 : GGAAACAGCACTTTGTAATAATATATCAA---ACGC-----CATG----CTGTAAATCTCAAC------TAACTACAAATGTAATTATTAATCT
gi|13345 : GGAAACCGCATTTTGTATGAATGTAACAATCGACGT-----CATG----TTGTAAATCGTAAC------GAACTGCGAATGTAACG
gi|13346 : GAAACAGCATTTTGTAAGAATTTATCGATCGACGT-----CATG----TTGTAAATCACAAC------GAACTGTGAATGTAACAATTAATC
gi|13347 : GAAACAACACTTTGTA--------TCAATAGACGT-----CATGAACATTGTAAATCTCAAA------GAACTG--AATGTAACGATTAATCT
gi|13348 : GAGATAACA--TCGTAAA---GTATCTATTGATGC-----CATG----TTGTAAAGTTTAAC------CAGCTGCGAATGCAACAATTTATCT
gi|13349 : AACATCTTATAAGAAATTATTAATCGACCC-----CAAG----TTGTAAATCTCATC------GAACTGCGAATGAAATTATTAATCT
gi|13350 : TTATAATAATGTATCTATCGACGC-----CATG----TTGTAAATTTCAAC------GAACTGCGAATGTAACGATTAATCT
gi|13351 : TTGTAAAAATATATTTATCGACAC-----AATA----GTGTAAATTTCTAC------GAACTGCAAAAGTAACGATAACTCT
gi|13352 : GAATTTATCTATCGACGC-----CATG----TTGTAAATTTC-AC------AAACTGCAAATGTAACGATTAATCT
gi|13353 : GAGTGTATCGATCGGCGT-----CATG----TTGTTAATTTCAAC------GAACTACAAATCTAACGATTAATCT
gi|13354 : GAATGTATCTATCGACATGACATCATG----TTGTAACTTTCAAC----------TCCGAAAGTAACGATTAATCT
gi|13355 : GAGTGTATCTATCGACAT-----CATG----TTGTAAATTTCAAT------GAAATACGAGTGTAA
gi|13356 : AATGTAACTATAGACGC-----CATG----GTGTAAATTTAAAC------GAACTGCGAATGTAACGAATAATCT
gi|13357 : AGTGTATCTATCGACGA-----CATC----TTGTAAATTTAAAC------GAGCTACGAATGTAACGATTAATCT
gi|13358 : ATTTATCAATCGACGC-----CATT----TTGTAAATCTCAAC------GAAATGCGAATGTAATATTTAATC
gi|13359 : ACGC-----CATG----TTGTAAATTTCAAC------GAACTTCGAATGTAACGATTAATTT
Alignments
lowQualScore : 1 44444 3333 555555
lowQualScore : . ..... .... ......
lowQualScore : 0 33333 7777 000000
consensus : GGAAACAGCACTTTGTAAGAATGTATCNATCGACGC-----CATG----TTGTAAATCTCAAC------GAACTGCGAATGTAACGATTAATCT
Reference ( family-745 ) : GGAAACAGCACTTTGTAAGAATGTATCNATCGACGC-----CATG----TTGTAAATCTCAAC------GAACTGCGAATGTAACGATTAATCT
gi|13337 : GGAAACAGCACTTTGTAAGAATGTATCAATCAACCA-----CATG----TTGTAAATCTCAAC------AAACTGCAAATGTAACAATTAATCT
gi|13338 : GGAAACTGCACTTTGTAAGAATGTATCAATCAACAT-----CATG----TTGTAAATCCCAAC------AAACTGCGAATGTAACGATTAATCT
gi|13339 : GGAAGCAGCACTTTATAAGAATGTATCAATCAACGC-----CATG----TTGTAAATCTCGAT------GAACTGCAAATGTAACGATTGATCT
gi|13340 : GGAAACAGCACTTTGTAAGAATGTATCAATCGACGT-----CATG----TTGTAAATCTCAACAAACTTGAACTACGGATGTAACGATTAATTT
gi|13341 : GGAAACAGCACTTTGTAAGAATGTATCAATCGCCGT-----GATG----CGGTACATCTCAAC------GAACTGCAAATGTAACGATTAATCT
gi|13342 : GAAAACAGCACCTTGTAAAAATGTATCAATCAATAT-----AA-A----TTGTAAATCTCAAC------AAACTGCAAATGTAACAATTAATCT
gi|13343 : GGAAACAGCATTTTGTAAGACTATATCAATCGACGT-----CAT------TGTAAATCGCAAC------GAACTGCGAATGTACCGATTAATCT
gi|13344 : GGAAACAGCACTTTGTAATAATATATCAA---ACGC-----CATG----CTGTAAATCTCAAC------TAACTACAAATGTAATTATTAATCT
gi|13345 : GGAAACCGCATTTTGTATGAATGTAACAATCGACGT-----CATG----TTGTAAATCGTAAC------GAACTGCGAATGTAACG
gi|13346 : GAAACAGCATTTTGTAAGAATTTATCGATCGACGT-----CATG----TTGTAAATCACAAC------GAACTGTGAATGTAACAATTAATC
gi|13347 : GAAACAACACTTTGTA--------TCAATAGACGT-----CATGAACATTGTAAATCTCAAA------GAACTG--AATGTAACGATTAATCT
gi|13348 : GAGATAACA--TCGTAAA---GTATCTATTGATGC-----CATG----TTGTAAAGTTTAAC------CAGCTGCGAATGCAACAATTTATCT
gi|13349 : AACATCTTATAAGAAATTATTAATCGACCC-----CAAG----TTGTAAATCTCATC------GAACTGCGAATGAAATTATTAATCT
gi|13350 : TTATAATAATGTATCTATCGACGC-----CATG----TTGTAAATTTCAAC------GAACTGCGAATGTAACGATTAATCT
gi|13351 : TTGTAAAAATATATTTATCGACAC-----AATA----GTGTAAATTTCTAC------GAACTGCAAAAGTAACGATAACTCT
gi|13352 : GAATTTATCTATCGACGC-----CATG----TTGTAAATTTC-AC------AAACTGCAAATGTAACGATTAATCT
gi|13353 : GAGTGTATCGATCGGCGT-----CATG----TTGTTAATTTCAAC------GAACTACAAATCTAACGATTAATCT
gi|13354 : GAATGTATCTATCGACATGACATCATG----TTGTAACTTTCAAC----------TCCGAAAGTAACGATTAATCT
gi|13355 : GAGTGTATCTATCGACAT-----CATG----TTGTAAATTTCAAT------GAAATACGAGTGTAA
gi|13356 : AATGTAACTATAGACGC-----CATG----GTGTAAATTTAAAC------GAACTGCGAATGTAACGAATAATCT
gi|13357 : AGTGTATCTATCGACGA-----CATC----TTGTAAATTTAAAC------GAGCTACGAATGTAACGATTAATCT
gi|13358 : ATTTATCAATCGACGC-----CATT----TTGTAAATCTCAAC------GAAATGCGAATGTAATATTTAATC
gi|13359 : ACGC-----CATG----TTGTAAATTTCAAC------GAACTTCGAATGTAACGATTAATTT
blockSeqs : A GACAT AACA AAACTT
blockSeqs : A . . .
blockSeqs : A . . .
blockSeqs : A . . .
blockSeqs : A . . .
blockSeqs : A . . .
blockSeqs : A . . .
blockSeqs : A . . .
blockSeqs : G . . .
blockSeqs : A . . .
blockSeqs : T . . .
blockSeqs : A . . .
blockSeqs : T . . .
blockSeqs : T . . .
blockSeqs : T . . .
blockSeqs : G . . .
blockSeqs : T . . .
blockSeqs : T . . .
blockSeqs : T . . .
blockSeqs : T . . .
blockSeqs : A . . .
blockSeqs : . . .
blockSeqCons :
originalCons : GGAAACAGCACTTTGTAAGAATGTATCNATCGACGC-----CATG----TTGTAAATCTCAAC------GAACTGCGAATGTAACGATTAATCT
finalCons : GGAAACAGCACTTTGTAAGAATGTATCNATCGACGC-----CATG----TTGTAAATCTCAAC------GAACTGCGAATGTAACGATTAATCT
Alignments
lowQualScore : 1 44444 3333 555555
lowQualScore : . ..... .... ......
lowQualScore : 0 33333 7777 000000
consensus : GGAAACAGCACTTTGTAAGAATGTATCNATCGACGC-----CATG----TTGTAAATCTCAAC------GAACTGCGAATGTAACGATTAATCT
Reference ( family-745 ) : GGAAACAGCACTTTGTAAGAATGTATCNATCGACGC-----CATG----TTGTAAATCTCAAC------GAACTGCGAATGTAACGATTAATCT
gi|13337 : GGAAACAGCACTTTGTAAGAATGTATCAATCAACCA-----CATG----TTGTAAATCTCAAC------AAACTGCAAATGTAACAATTAATCT
gi|13338 : GGAAACTGCACTTTGTAAGAATGTATCAATCAACAT-----CATG----TTGTAAATCCCAAC------AAACTGCGAATGTAACGATTAATCT
gi|13339 : GGAAGCAGCACTTTATAAGAATGTATCAATCAACGC-----CATG----TTGTAAATCTCGAT------GAACTGCAAATGTAACGATTGATCT
gi|13340 : GGAAACAGCACTTTGTAAGAATGTATCAATCGACGT-----CATG----TTGTAAATCTCAACAAACTTGAACTACGGATGTAACGATTAATTT
gi|13341 : GGAAACAGCACTTTGTAAGAATGTATCAATCGCCGT-----GATG----CGGTACATCTCAAC------GAACTGCAAATGTAACGATTAATCT
gi|13342 : GAAAACAGCACCTTGTAAAAATGTATCAATCAATAT-----AA-A----TTGTAAATCTCAAC------AAACTGCAAATGTAACAATTAATCT
gi|13343 : GGAAACAGCATTTTGTAAGACTATATCAATCGACGT-----CAT------TGTAAATCGCAAC------GAACTGCGAATGTACCGATTAATCT
gi|13344 : GGAAACAGCACTTTGTAATAATATATCAA---ACGC-----CATG----CTGTAAATCTCAAC------TAACTACAAATGTAATTATTAATCT
gi|13345 : GGAAACCGCATTTTGTATGAATGTAACAATCGACGT-----CATG----TTGTAAATCGTAAC------GAACTGCGAATGTAACG
gi|13346 : GAAACAGCATTTTGTAAGAATTTATCGATCGACGT-----CATG----TTGTAAATCACAAC------GAACTGTGAATGTAACAATTAATC
gi|13347 : GAAACAACACTTTGTA--------TCAATAGACGT-----CATGAACATTGTAAATCTCAAA------GAACTG--AATGTAACGATTAATCT
gi|13348 : GAGATAACA--TCGTAAA---GTATCTATTGATGC-----CATG----TTGTAAAGTTTAAC------CAGCTGCGAATGCAACAATTTATCT
gi|13349 : AACATCTTATAAGAAATTATTAATCGACCC-----CAAG----TTGTAAATCTCATC------GAACTGCGAATGAAATTATTAATCT
gi|13350 : TTATAATAATGTATCTATCGACGC-----CATG----TTGTAAATTTCAAC------GAACTGCGAATGTAACGATTAATCT
gi|13351 : TTGTAAAAATATATTTATCGACAC-----AATA----GTGTAAATTTCTAC------GAACTGCAAAAGTAACGATAACTCT
gi|13352 : GAATTTATCTATCGACGC-----CATG----TTGTAAATTTC-AC------AAACTGCAAATGTAACGATTAATCT
gi|13353 : GAGTGTATCGATCGGCGT-----CATG----TTGTTAATTTCAAC------GAACTACAAATCTAACGATTAATCT
gi|13354 : GAATGTATCTATCGACATGACATCATG----TTGTAACTTTCAAC----------TCCGAAAGTAACGATTAATCT
gi|13355 : GAGTGTATCTATCGACAT-----CATG----TTGTAAATTTCAAT------GAAATACGAGTGTAA
gi|13356 : AATGTAACTATAGACGC-----CATG----GTGTAAATTTAAAC------GAACTGCGAATGTAACGAATAATCT
gi|13357 : AGTGTATCTATCGACGA-----CATC----TTGTAAATTTAAAC------GAGCTACGAATGTAACGATTAATCT
gi|13358 : ATTTATCAATCGACGC-----CATT----TTGTAAATCTCAAC------GAAATGCGAATGTAATATTTAATC
gi|13359 : ACGC-----CATG----TTGTAAATTTCAAC------GAACTTCGAATGTAACGATTAATTT