lowQualScore : 1 6666666666666666666666 1 1
lowQualScore : 7 333 5 1 2 2 2 4444 2 2 22 2 4444 1 1 2222222222222222222222 1 666 88888 4 5 4 2 1 7777 3
lowQualScore : . ... . . . . . .... . . .. . .... . . ...................... . ... ..... . . . . . .... .
lowQualScore : 0 555 2 8 0 0 0 2222 0 0 88 0 2222 8 8 0000000000000000000000 9 444 88888 0 2 7 1 3 1111 3
consensus : TTAAACATTTGGGAGAA---ACCGCAAGTCACGTGATCGACAT-TA-GCATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TT-G----TTTA-T-TGGCATAAGCA-A---GAAC------TAT----A-GAA---GTAT-----AGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
Reference ( gi|105173 ) : TTTAACATTTGGGAGAA---ACTGCAAGTCACGTGATCGACAT-TA-GCATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TT-G----TTTA-T-TGACATAAGCA-AT--GAAC------TAT----A-GAA---GTAT-----AGTTCATTGGCATAAGGGGCAGATCTAGAAAATTTTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
gi|105176 : TTAAACATTTGGGAGAA---ACCGCAAGTAACGTGATCGACAT-CA-ATATATC-T----C-TATATTTAGAA-CGAGTATTGA--TT-G----TTTA-C-TGGTATAAGCA-AG--GAAC------TAT----A-TAA---GTGT-----AGTTCCTTGGCATAAGGGACAGATCTAAAAAACATTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
gi|105175 : TTAAACATTTGGGAGAA---ACCGCAAATCACGTGATCGACAT-AA-GCATATC-T----C-TATTTTTAGAA-CGAGTATTTA--TT-G----TTTA-T-TTGTATAAGCA-AG--GTAC------TTT----A-GAA---GTAT-----AGTTCCTTGGCATAAGGGGCAGATCTAGAAAAGTTTCGTTC-CCGTA--AAA----TGAAAT-ATGGTAAATATATTTA
gi|105174 : TTAAACATTTGGGAGAA---ACCGCAAGTCACATGATCGACAT-TA-GCATATC-T----C-TATTTTTAGAA-GGAGTATTGA--TT-G----TTTA-T-TGGCATAAGCA-AG--GAACTACATGTAT----A-TAA---GTAT-----AGTTCCTTGGCATAAGGGACAGATCTAGAAAAGATTCATTC-CTGTATTCAA----GGAAAT-ATGGTAAAGATATTTA
gi|105177 : TTAAACATTTGGGAGAA---ACCGCATGTCACGTGATCGACAT-TA-GTATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TT-G----TTTA-A-TGGCATAAGCA-AG--AAAC----------------------TAT-----AGTTCCGTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTAATCAA----TGAAAT-ATGCTAAATATATTTA
gi|105178 : TTAAACATTTGGGAGAA---ACCGCAAGTCACATGATCGACAT-TA-GCATATC-T----C-TATTTTTAGAA-CGAATATTGA--TT-G----TTTA-T-TGACATAAGCA----------------------A-GGA---GTAT-----AGTTCCTTGGCATAAGGGACATATCTAGAAAAGTTTCGTTA-CCGTA
gi|105179 : TTAAACATTTGGGAGAA---ACCGCAAGTCACATGATCGACAT-TA-GCATATC-T----C-TATTTTTTGAA-CGAGTATTGA--TT-G----TTTA-T-TGACATAAGCA----------------------A-GGA---GTAT-----AGTTCCTTGGCATAAGGGACATATCTAGAAAAGTTTCGTTA-CCGTA
gi|105180 : TTAAACATTTGGGAGAA---ACCGCAAGTCACATGATCGACAT-TA-GCATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TT-G----TTTA-T-TGACATAGGCA----------------------A-GGA---GTAT-----AGTTCCTTGGCATAAGGGACATATCTAGGAAAGTTTCGTTA-CCGTA
gi|105182 : TTAAACATTTGGGAGAA---ACCGCAAGTCACATGATCGACAT-TA-GCATATC-T----C-TATTTTTAGAA-TGAGTATTGA--TT-G----TTTA-T-TGACATAAGCA-A---GGAG------TA--------------TAT-----AGTTCCTTGGCATAAGGGACAGATGTAGAAAAGTTTCGTTA-CCGTA
gi|105181 : TTAAACATTTGGGAGAA---ACTGCAAGTCATATGATCGACAT-TA-GCATATC-T----C-TATTTTTAGAA-CTAGTATTGA--TT-G----TTTA-T-TGACATAAGCA----------------------A-GGA---GTAT-----AGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTcacatttttaaaatgatagaataaagcaaa
gi|105184 : TTAAACATTTGGGAGAA---ACCGCAAGTCACATGATCGGCAT-TA-GCATATC-T----C-TATTTTAAGAA-TGAGTATTGA--TT-G----TTCA-C-TGACATAAGCA----------------------A-GGA---GTAT-----AGTTTCTTGGCATAAGGGACAGATCTAGAAG--TTTCGTTA-CCGTA
gi|105183 : TTAAACATTTGGGAGAA---ACCGCAAGTCACATGATCGGCAT-AA-GCATATC-T----C-TATTTTTAGAA-CAAGTATTGA--TT-A----TTTA-T-TGTTATAAGCA----------------------A-GGA---GTAT-----AGTTCTTTGGCATAAGGGACAGATCTAGAAACGTTTCcacatttataaaa
gi|105186 : TTAAACATTTGGGAGAA---ACCGCAAGTCACGTGATCGACAT-TA-GCATATA-T----C-TATTTTTAGAA-TGAGTATTGA--TA-G----TATA-T-CAGCATAAGGG-ACA-GATC------TAG----A-AAA---G
gi|105185 : TTAAACATTTGGGAGAA---ATTGCAAGTCAGGTGATCGACAT-AA-GCATATC-T----G-TATTTTAAGAA-CGAGTATTGA--TTAG----TTCC-T-TGACATGAGGG-ACA-GATC------TAG----A-AAA---GTTT-----CGTTCattcgttcccgta
gi|105187 : AACATTTGGGAGAA---ACCGCAAGTCACGTGATCGACAT-TA-GCATATC-T----T-TATTTTTAGAA-TGAGTATTGA--TT-G----TTTA-T-TAGCACAAGCA-AG--GAAC------TAT----A-GAA---GTTT-----AGTTCCTTGGCATAAGAGACAGATCTAGAAAAGTTTCGTTC-TCGTATTCAA----T-AAAT-ATGGTAAATAAATTTAccgtcttcaatgaaaaatggtaaataattt
gi|105188 : aAACATTTGGGAGAA---ACCGCAAGTCACATGATCGACAT-TA-GCATATC-T--------------------AGTATTGA--TT-A----TTTA-C-TGGCATAAGCA-AA--GAAC------TAT----A-GAA---GTAT-----AGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTGTTGTTC-CCGTATTCAA----TGAAAT-AAGGTAAATATATTTA
gi|105189 : aAATATTTGGGAGAA---ACCGCAAGTCACATGATCGACAT-TA-GCATATC-T----C-TATTTTTAGAA-CGAGTATTTG--TT-G----TTTA-T-TGACATAAGCA----------------------A-GGA---GTAT-----AGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTA-CCGTA
gi|105191 : aAACATTTGGGAGAA----------------TGG--GACGT-TA-GCATATC-T----C-TGTTTTTAAAAACGAGTATTGA--TT-G----TTTA-C-TGGCATAAGCA-AG--GAGC------TAT----A-TAA---TTAA-----AGTTT-CTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
gi|105190 : AACATTTGGGAGAA--------------C----TCGCC-T-TACGCTTATC-T----CATTTTTTTAAAA-TGAGCATTGA--TT-GCCGATTTA-TCTGA--TAAGTT-CT--GCGT------TG---------------AT-----TGTTTATTGGGATAAGGGACAGATCTGGAAAAGCTTCCTTCTCCGTG--CAAATATTAAAATAATAGAAAATA
gi|105192 : aAACATTTGGGAGAACCAGCTGTGAATCATGTGATC-ACCTGTA-GCATATCATATTGC-TAGTTTTAGAT-CAGGTGTT-ATTTT-G----CTGATT-TGGCCTAAG
gi|105193 : AGAA---ACAGCAAGATATGTGATTGACAT-TA-GCATATC-T----T-TATTTTTAGAA-TGAGTATTGA--TT-G----TTTA-T-TGGCATAAGCA-AG--GAAC------TAT----A-GAA---GTAT-----AGTTCCTTGGCATAAGGGACAGATCTAGAAAAATTTTGTTC-CCATATTCAA----TGAAAT-ATGGTAAATATATTTAggaa
gi|105186 : A-T-CGACATTAGCATAT---ATC------TATTTTTA-GAATGAGTATTGAT-AGTATATCAGCATAAGGGACAGATCTAGAAAAGATTCGTTC-CCGTA
gi|105185 : ttaaacatttgggagaaaccgcaagtcacgtgA-T-CGACATAAGCATATCTGTAT------TTT----AAGAACGAGTATTGATTAGTTCCTTGACATGAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTCTTCAA----TGAAAA-ATGGTAAATA-ATTT
gi|105194 : ttaaacatttgggagaaattgcaagtcaggtgAA---GTAT-----ACTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCCTATTCAA----TGAAAT-ATGGTTAATATATTTA
gi|105195 : TCCTTGGCATAAGGGACAGGTCTAGAAAAGTTTCAATC-CCGTATTCAA----TGAAAT-ACGGTTAATATATTTA
Alignments
lowQualScore : 55555555555555555
lowQualScore : 333 1 1 4444 1 1 22 1 4444 1 0 333 1 11111111111111111 0 22 2 0 6666 3
lowQualScore : ... . . .... . . .. . .... . . ... . ................. . .. . . .... .
lowQualScore : 333 9 9 0000 9 9 66 9 0000 9 4 333 9 66666666666666666 2 55 0 5 5555 1
consensus : TTAAACATTTGGGAGA---AACCGCAAGTCACGTGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TT-G----TTTA-TTGGCATAAG---C-AA-G-A-AC------TATAGAAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
Reference ( family-740 ) : TTAAACATTTGGGAGA---AACCGCAAGTCACGTGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TT-G----TTTA-TTGGCATAAG---C-AA-G-A-AC------TATAGAAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
gi|105173 : TTTAACATTTGGGAGA---AACTGCAAGTCACGTGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TT-G----TTTA-TTGACATAAG---C-AATG-A-AC------TATAGAAGT--ATAGTTCATTGGCATAAGGGGCAGATCTAGAAAATTTTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
gi|105174 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-GGAGTATTGA--TT-G----TTTA-TTGGCATAAG---C-AAGG-A-ACTACATGTATATAAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGATTCATTC-CTGTATTCAA----GGAAAT-ATGGTAAAGATATTTA
gi|105175 : TTAAACATTTGGGAGA---AACCGCAAATCACGTGATCGACAT-AAGCATATC-T----C-TATTTTTAGAA-CGAGTATTTA--TT-G----TTTA-TTTGTATAAG---C-AA-G-GTAC------TTTAGAAGT--ATAGTTCCTTGGCATAAGGGGCAGATCTAGAAAAGTTTCGTTC-CCGTA--AAA----TGAAAT-ATGGTAAATATATTTA
gi|105176 : TTAAACATTTGGGAGA---AACCGCAAGTAACGTGATCGACAT-CAATATATC-T----C-TATATTTAGAA-CGAGTATTGA--TT-G----TTTA-CTGGTATAAG---C-AAGG-A-AC------TATATAAGT--GTAGTTCCTTGGCATAAGGGACAGATCTAAAAAACATTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
gi|105177 : TTAAACATTTGGGAGA---AACCGCATGTCACGTGATCGACAT-TAGTATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TT-G----TTTA-ATGGCATAAG---C-AA-G-A--------------AACT--ATAGTTCCGTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTAATCAA----TGAAAT-ATGCTAAATATATTTA
gi|105178 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAATATTGA--TT-G----TTTA-TTGACATAAG---C-A-----------------AGGAGT--ATAGTTCCTTGGCATAAGGGACATATCTAGAAAAGTTTCGTTA-CCGTA
gi|105179 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTTGAA-CGAGTATTGA--TT-G----TTTA-TTGACATAAG---C-A-----------------AGGAGT--ATAGTTCCTTGGCATAAGGGACATATCTAGAAAAGTTTCGTTA-CCGTA
gi|105180 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TT-G----TTTA-TTGACATAGG---C-A-----------------AGGAGT--ATAGTTCCTTGGCATAAGGGACATATCTAGGAAAGTTTCGTTA-CCGTA
gi|105181 : TTAAACATTTGGGAGA---AACTGCAAGTCATATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CTAGTATTGA--TT-G----TTTA-TTGACATAAG---C-A-----------------AGGAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTT
gi|105182 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-TGAGTATTGA--TT-G----TTTA-TTGACATAAG---C-AA-G-G-AG------TA------T--ATAGTTCCTTGGCATAAGGGACAGATGTAGAAAAGTTTCGTTA-CCGTA
gi|105183 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGGCAT-AAGCATATC-T----C-TATTTTTAGAA-CAAGTATTGA--TT-A----TTTA-TTGTTATAAG---C-A-----------------AGGAGT--ATAGTTCTTTGGCATAAGGGACAGATCTAGAAACGTTTCcacatttttaaaatgatagaataaagcaaa
gi|105184 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGGCAT-TAGCATATC-T----C-TATTTTAAGAA-TGAGTATTGA--TT-G----TTCA-CTGACATAAG---C-A-----------------AGGAGT--ATAGTTTCTTGGCATAAGGGACAGATCTAG--AAGTTTCGTTA-CCGTA
gi|105185 : TTAAACATTTGGGAGA---AATTGCAAGTCAGGTGATCGACAT-AAGCATATC-T----G-TATTTTAAGAA-CGAGTATTGA--TTAG----TTCC-TTGACATGAGGGAC--A-G-A-TC------TAGAAAAGT--TTCGTTCCcacatttataaaa
gi|105185 : -AA-G-A-ACGAG---TATTGA--T---TAGTTCCTTGACATGAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTCTTCAA----TGAAAA-ATGGTAAATA-ATTTcgtcttcaatgaaaaatggtaaataattt
gi|105186 : ttaaacatttgggagaaattgcaagtcaggtgatcgacataagcatatctgtattttTTAAACATTTGGGAGA---AACCGCAAGTCACGTGATCGACAT-TAGCATATA-T----C-TATTTTTAGAA-TGAGT------------------A-TTG----------------------------ATAG---T--ATA-----TCAGCATAAGGGACAGATCTAGAAAAGATTCGTTC-CCGTA
gi|105187 : AAACATTTGGGAGA---AACCGCAAGTCACGTGATCGACAT-TAGCATATC-T----T-TATTTTTAGAA-TGAGTATTGA--TT-G----TTTA-TTAGCACAAG---C-AAGG-A-AC------TATAGAAGT--TTAGTTCCTTGGCATAAGAGACAGATCTAGAAAAGTTTCGTTC-TCGTATTCAA----T-AAAT-ATGGTAAATAAATTTA
gi|105188 : AAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T--------------------AGTATTGA--TT-A----TTTA-CTGGCATAAG---CAAA-G-A-AC------TATAGAAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTGTTGTTC-CCGTATTCAA----TGAAAT-AAGGTAAATATATTTA
gi|105189 : AAATATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAGTATTTG--TT-G----TTTA-TTGACATAAG---C-A-----------------AGGAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTA-CCGTA
gi|105190 : AAACATTTGGGAGA---ACTCGCC--TTACG--------------CTTATC-T----CATTTTTTTAAAA-TGAGCATTGA--TT-GCCGATTTA-TCTG-ATAAG---T-T-------C------TGC----GTTGATTGTTTATTGGGATAAGGGACAGATCTGGAAAAGCTTCCTTCTCCGTG--CAAATATTAAAATAATAGAAAATA
gi|105191 : AACATTTGGGAGA---A-------------TGG--GACGT-TAGCATATC-T----C-TGTTTTTAAAAACGAGTATTGA--TT-G----TTTA-CTGGCATAAG---C-AAGG-A-GC------TATATAATT--AAAGTTTC-TGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
gi|105192 : AACATTTGGGAGAACCAGCTGTGAATCATGTGATC-ACCTGTAGCATATCATATTGC-TAGTTTTAGAT-CAGGTGTT-ATTTT-G----CTGATTTGGCCTAAG---
gi|105193 : AGA---AACAGCAAGATATGTGATTGACAT-TAGCATATC-T----T-TATTTTTAGAA-TGAGTATTGA--TT-G----TTTA-TTGGCATAAG---C-AA-GGA-AC------TATAGAAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAATTTTGTTC-CCATATTCAA----TGAAAT-ATGGTAAATATATTTAggaa
gi|105194 : AAGT--ATACTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCCTATTCAA----TGAAAT-ATGGTTAATATATTTA
gi|105195 : TCCTTGGCATAAGGGACAGGTCTAGAAAAGTTTCAATC-CCGTATTCAA----TGAAAT-ACGGTTAATATATTTA
Alignments
lowQualScore : 55555555555555555
lowQualScore : 333 1 1 4444 1 1 22 1 4444 1 0 333 1 11111111111111111 0 22 2 0 6666 3
lowQualScore : ... . . .... . . .. . .... . . ... . ................. . .. . . .... .
lowQualScore : 333 9 9 0000 9 9 66 9 0000 9 4 333 9 66666666666666666 2 55 0 5 5555 1
consensus : TTAAACATTTGGGAGA---AACCGCAAGTCACGTGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TT-G----TTTA-TTGGCATAAG---C-AA-G-A-AC------TATAGAAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
Reference ( family-740 ) : TTAAACATTTGGGAGA---AACCGCAAGTCACGTGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TT-G----TTTA-TTGGCATAAG---C-AA-G-A-AC------TATAGAAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
gi|105173 : TTTAACATTTGGGAGA---AACTGCAAGTCACGTGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TT-G----TTTA-TTGACATAAG---C-AATG-A-AC------TATAGAAGT--ATAGTTCATTGGCATAAGGGGCAGATCTAGAAAATTTTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
gi|105174 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-GGAGTATTGA--TT-G----TTTA-TTGGCATAAG---C-AAGG-A-ACTACATGTATATAAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGATTCATTC-CTGTATTCAA----GGAAAT-ATGGTAAAGATATTTA
gi|105175 : TTAAACATTTGGGAGA---AACCGCAAATCACGTGATCGACAT-AAGCATATC-T----C-TATTTTTAGAA-CGAGTATTTA--TT-G----TTTA-TTTGTATAAG---C-AA-G-GTAC------TTTAGAAGT--ATAGTTCCTTGGCATAAGGGGCAGATCTAGAAAAGTTTCGTTC-CCGTA--AAA----TGAAAT-ATGGTAAATATATTTA
gi|105176 : TTAAACATTTGGGAGA---AACCGCAAGTAACGTGATCGACAT-CAATATATC-T----C-TATATTTAGAA-CGAGTATTGA--TT-G----TTTA-CTGGTATAAG---C-AAGG-A-AC------TATATAAGT--GTAGTTCCTTGGCATAAGGGACAGATCTAAAAAACATTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
gi|105177 : TTAAACATTTGGGAGA---AACCGCATGTCACGTGATCGACAT-TAGTATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TT-G----TTTA-ATGGCATAAG---C-AA-G-A--------------AACT--ATAGTTCCGTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTAATCAA----TGAAAT-ATGCTAAATATATTTA
gi|105178 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAATATTGA--TT-G----TTTA-TTGACATAAG---C-A-----------------AGGAGT--ATAGTTCCTTGGCATAAGGGACATATCTAGAAAAGTTTCGTTA-CCGTA
gi|105179 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTTGAA-CGAGTATTGA--TT-G----TTTA-TTGACATAAG---C-A-----------------AGGAGT--ATAGTTCCTTGGCATAAGGGACATATCTAGAAAAGTTTCGTTA-CCGTA
gi|105180 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TT-G----TTTA-TTGACATAGG---C-A-----------------AGGAGT--ATAGTTCCTTGGCATAAGGGACATATCTAGGAAAGTTTCGTTA-CCGTA
gi|105181 : TTAAACATTTGGGAGA---AACTGCAAGTCATATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CTAGTATTGA--TT-G----TTTA-TTGACATAAG---C-A-----------------AGGAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTT
gi|105182 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-TGAGTATTGA--TT-G----TTTA-TTGACATAAG---C-AA-G-G-AG------TA------T--ATAGTTCCTTGGCATAAGGGACAGATGTAGAAAAGTTTCGTTA-CCGTA
gi|105183 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGGCAT-AAGCATATC-T----C-TATTTTTAGAA-CAAGTATTGA--TT-A----TTTA-TTGTTATAAG---C-A-----------------AGGAGT--ATAGTTCTTTGGCATAAGGGACAGATCTAGAAACGTTTCcacatttttaaaatgatagaataaagcaaa
gi|105184 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGGCAT-TAGCATATC-T----C-TATTTTAAGAA-TGAGTATTGA--TT-G----TTCA-CTGACATAAG---C-A-----------------AGGAGT--ATAGTTTCTTGGCATAAGGGACAGATCTAG--AAGTTTCGTTA-CCGTA
gi|105185 : TTAAACATTTGGGAGA---AATTGCAAGTCAGGTGATCGACAT-AAGCATATC-T----G-TATTTTAAGAA-CGAGTATTGA--TTAG----TTCC-TTGACATGAGGGAC--A-G-A-TC------TAGAAAAGT--TTCGTTCCcacatttataaaa
gi|105185 : -AA-G-A-ACGAG---TATTGA--T---TAGTTCCTTGACATGAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTCTTCAA----TGAAAA-ATGGTAAATA-ATTTcgtcttcaatgaaaaatggtaaataattt
gi|105186 : ttaaacatttgggagaaattgcaagtcaggtgatcgacataagcatatctgtattttTTAAACATTTGGGAGA---AACCGCAAGTCACGTGATCGACAT-TAGCATATA-T----C-TATTTTTAGAA-TGAGT------------------A-TTG----------------------------ATAG---T--ATA-----TCAGCATAAGGGACAGATCTAGAAAAGATTCGTTC-CCGTA
gi|105187 : AAACATTTGGGAGA---AACCGCAAGTCACGTGATCGACAT-TAGCATATC-T----T-TATTTTTAGAA-TGAGTATTGA--TT-G----TTTA-TTAGCACAAG---C-AAGG-A-AC------TATAGAAGT--TTAGTTCCTTGGCATAAGAGACAGATCTAGAAAAGTTTCGTTC-TCGTATTCAA----T-AAAT-ATGGTAAATAAATTTA
gi|105188 : AAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T--------------------AGTATTGA--TT-A----TTTA-CTGGCATAAG---CAAA-G-A-AC------TATAGAAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTGTTGTTC-CCGTATTCAA----TGAAAT-AAGGTAAATATATTTA
gi|105189 : AAATATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAGTATTTG--TT-G----TTTA-TTGACATAAG---C-A-----------------AGGAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTA-CCGTA
gi|105190 : AAACATTTGGGAGA---ACTCGCC--TTACG--------------CTTATC-T----CATTTTTTTAAAA-TGAGCATTGA--TT-GCCGATTTA-TCTG-ATAAG---T-T-------C------TGC----GTTGATTGTTTATTGGGATAAGGGACAGATCTGGAAAAGCTTCCTTCTCCGTG--CAAATATTAAAATAATAGAAAATA
gi|105191 : AACATTTGGGAGA---A-------------TGG--GACGT-TAGCATATC-T----C-TGTTTTTAAAAACGAGTATTGA--TT-G----TTTA-CTGGCATAAG---C-AAGG-A-GC------TATATAATT--AAAGTTTC-TGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
gi|105192 : AACATTTGGGAGAACCAGCTGTGAATCATGTGATC-ACCTGTAGCATATCATATTGC-TAGTTTTAGAT-CAGGTGTT-ATTTT-G----CTGATTTGGCCTAAG---
gi|105193 : AGA---AACAGCAAGATATGTGATTGACAT-TAGCATATC-T----T-TATTTTTAGAA-TGAGTATTGA--TT-G----TTTA-TTGGCATAAG---C-AA-GGA-AC------TATAGAAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAATTTTGTTC-CCATATTCAA----TGAAAT-ATGGTAAATATATTTAggaa
gi|105194 : AAGT--ATACTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCCTATTCAA----TGAAAT-ATGGTTAATATATTTA
gi|105195 : TCCTTGGCATAAGGGACAGGTCTAGAAAAGTTTCAATC-CCGTATTCAA----TGAAAT-ACGGTTAATATATTTA
blockSeqs : ACC G A ATTG A A TT A CCGA T GGA A AGGAACTACATGTAT TG T ATAT A
blockSeqs : . . . . . . . . . . . . AGAACGAGTAT . . . .
blockSeqs : . . . . . . . . . . . . AGGTACTTT . . . .
blockSeqs : . . . . . . . . . . . . AGGAACTAT . . . .
blockSeqs : . . . . . . . . . . . . AGGAACTAT . . . .
blockSeqs : . . . . . . . . . . . . AGGAGCTAT . . . .
blockSeqs : . . . . . . . . . . . . AGGAACTAT . . . .
blockSeqs : . . . . . . . . . . . . AGATCTAG . . . .
blockSeqs : . . . . . . . . . . . . AGAACTAT . . . .
blockSeqs : . . . . . . . . . . . . AGGAGTA . . . .
blockSeqs : . . . . . . . . . . . . CTGC . . . .
blockSeqs : . . . . . . . . . . . . AGA . . . .
blockSeqs : . . . . . . . . . . . . AT . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : AGACTAT**********
originalCons : TTAAACATTTGGGAGA---AACCGCAAGTCACGTGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TT-G----TTTA-TTGGCATAAG---C-AA-G-A-AC------TATAGAAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
finalCons : TTAAACATTTGGGAGA---AACCGCAAGTCACGTGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TT-G----TTTA-TTGGCATAAG---C-AAGACTAT----------AGAAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
Alignments
lowQualScore : 6666666666666666666
lowQualScore : 333 1 1 4444 1 1 22 4444 1 0 2222222222222222222 0 22 2 0 6666 3
lowQualScore : ... . . .... . . .. .... . . ................... . .. . . .... .
lowQualScore : 333 9 9 0000 9 9 66 0000 9 9 5555555555555555555 7 66 0 5 5555 1
consensus : TTAAACATTTGGGAGA---AACCGCAAGTCACGTGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TTG----TTTA-TTGGCATAAGCAA--G--A--C------TATAGAAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
Reference ( family-740 ) : TTAAACATTTGGGAGA---AACCGCAAGTCACGTGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TTG----TTTA-TTGGCATAAGCAA--G--A--C------TATAGAAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
gi|105173 : TTTAACATTTGGGAGA---AACTGCAAGTCACGTGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TTG----TTTA-TTGACATAAGCAATGA--A--C------TATAGAAGT--ATAGTTCATTGGCATAAGGGGCAGATCTAGAAAATTTTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
gi|105174 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-GGAGTATTGA--TTG----TTTA-TTGGCATAAGCAA--GGAA--CTACATGTATATAAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGATTCATTC-CTGTATTCAA----GGAAAT-ATGGTAAAGATATTTA
gi|105175 : TTAAACATTTGGGAGA---AACCGCAAATCACGTGATCGACAT-AAGCATATC-T----C-TATTTTTAGAA-CGAGTATTTA--TTG----TTTA-TTTGTATAAGCAA--GGTA--C------TTTAGAAGT--ATAGTTCCTTGGCATAAGGGGCAGATCTAGAAAAGTTTCGTTC-CCGTA--AAA----TGAAAT-ATGGTAAATATATTTA
gi|105176 : TTAAACATTTGGGAGA---AACCGCAAGTAACGTGATCGACAT-CAATATATC-T----C-TATATTTAGAA-CGAGTATTGA--TTG----TTTA-CTGGTATAAGCAA--GGAA--C------TATATAAGT--GTAGTTCCTTGGCATAAGGGACAGATCTAAAAAACATTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
gi|105177 : TTAAACATTTGGGAGA---AACCGCATGTCACGTGATCGACAT-TAGTATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TTG----TTTA-ATGGCATAAGCAA--G--A--------------AACT--ATAGTTCCGTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTAATCAA----TGAAAT-ATGCTAAATATATTTA
gi|105178 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAATATTGA--TTG----TTTA-TTGACATAAGCA-------------------AGGAGT--ATAGTTCCTTGGCATAAGGGACATATCTAGAAAAGTTTCGTTA-CCGTA
gi|105179 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTTGAA-CGAGTATTGA--TTG----TTTA-TTGACATAAGCA-------------------AGGAGT--ATAGTTCCTTGGCATAAGGGACATATCTAGAAAAGTTTCGTTA-CCGTA
gi|105180 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAGTATTGA--TTG----TTTA-TTGACATAGGCA-------------------AGGAGT--ATAGTTCCTTGGCATAAGGGACATATCTAGGAAAGTTTCGTTA-CCGTA
gi|105181 : TTAAACATTTGGGAGA---AACTGCAAGTCATATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CTAGTATTGA--TTG----TTTA-TTGACATAAGCA-------------------AGGAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTT
gi|105182 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-TGAGTATTGA--TTG----TTTA-TTGACATAAGCAA--G--G------------AGTA-T--ATAGTTCCTTGGCATAAGGGACAGATGTAGAAAAGTTTCGTTA-CCGTA
gi|105183 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGGCAT-AAGCATATC-T----C-TATTTTTAGAA-CAAGTATTGA--TTA----TTTA-TTGTTATAAGCA-------------------AGGAGT--ATAGTTCTTTGGCATAAGGGACAGATCTAGAAACGTTTCcacatttttaaaatgatagaataaagcaaa
gi|105184 : TTAAACATTTGGGAGA---AACCGCAAGTCACATGATCGGCAT-TAGCATATC-T----C-TATTTTAAGAA-TGAGTATTGA--TTG----TTCA-CTGACATAAGCA-------------------AGGAGT--ATAGTTTCTTGGCATAAGGGACAGATCTAG--AAGTTTCGTTA-CCGTA
gi|105185 : TTAAACATTTGGGAGA---AATTGCAAGTCAGGTGATCGACAT-AAGCATATC-T---------------------GTATT-----------------T----TAAGAAC--G--A--G------TATTGA--T---TAGTTCCTTGACATGAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTCTTCAA----TGAAAA-ATGGTAAATA-ATTTcacatttataaaa
gi|105186 : TTAAACATTTGGGAGA---AACCGCAAGTCACGTGATCGACAT-TAGCATATA-T----C-TATTTTTAGAA-TGAGT-----------------A-TTG--------------------------ATAG---T--ATA-----TCAGCATAAGGGACAGATCTAGAAAAGATTCGTTC-CCGTA
gi|105187 : AAACATTTGGGAGA---AACCGCAAGTCACGTGATCGACAT-TAGCATATC-T----T-TATTTTTAGAA-TGAGTATTGA--TTG----TTTA-TTAGCACAAGCAA--GGAA--C------TATAGAAGT--TTAGTTCCTTGGCATAAGAGACAGATCTAGAAAAGTTTCGTTC-TCGTATTCAA----T-AAAT-ATGGTAAATAAATTTA
gi|105188 : AAACATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T--------------------AGTATTGA--TTA----TTTA-CTGGCATAAGCAAAGA--A--C------TATAGAAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTGTTGTTC-CCGTATTCAA----TGAAAT-AAGGTAAATATATTTA
gi|105189 : AAATATTTGGGAGA---AACCGCAAGTCACATGATCGACAT-TAGCATATC-T----C-TATTTTTAGAA-CGAGTATTTG--TTG----TTTA-TTGACATAAGCA-------------------AGGAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTA-CCGTA
gi|105190 : AAACATTTGGGAGA---ACTCGCC--TTACG--------------CTTATC-T----CATTTTTTTAAAA-TGAGCATTGA--TTGCCGATTTA-TCTG-ATAAGTT---------C------TGC----GTTGATTGTTTATTGGGATAAGGGACAGATCTGGAAAAGCTTCCTTCTCCGTG--CAAATATTAAAATAATAGAAAATA
gi|105191 : AACATTTGGGAGA---A-------------TGG--GACGT-TAGCATATC-T----C-TGTTTTTAAAAACGAGTATTGA--TTG----TTTA-CTGGCATAAGCAA--G--GAGC------TATATAATT--AAAGTTTCT-GGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCGTATTCAA----TGAAAT-ATGGTAAATATATTTA
gi|105192 : AACATTTGGGAGAACCAGCTGTGAATCATGTGATC-ACCTGTAGCATATCATATTGC-TAGTTTTAGAT-CAGGTGTT-ATTTTG----CTGATTTGGCCTAAG
gi|105193 : AGA---AACAGCAAGATATGTGATTGACAT-TAGCATATC-T----T-TATTTTTAGAA-TGAGTATTGA--TTG----TTTA-TTGGCATAAGCAA--GGAA--C------TATAGAAGT--ATAGTTCCTTGGCATAAGGGACAGATCTAGAAAAATTTTGTTC-CCATATTCAA----TGAAAT-ATGGTAAATATATTTAggaa
gi|105194 : AAGT--ATACTTCCTTGGCATAAGGGACAGATCTAGAAAAGTTTCGTTC-CCCTATTCAA----TGAAAT-ATGGTTAATATATTTA
gi|105195 : TCCTTGGCATAAGGGACAGGTCTAGAAAAGTTTCAATC-CCGTATTCAA----TGAAAT-ACGGTTAATATATTTA