lowQualScore : 1 222222 1
lowQualScore : 2 555555 333 3 3 7 1 333333 3 1 1 3 3 3
lowQualScore : . ...... ... . . . . ...... . . . . . .
lowQualScore : 1 888888 555 3 4 9 8 444444 5 7 7 1 5 6
consensus : TAACTTGCA-TC------GGA---TGGAAAATAANGCCGGT-AG-----A-G-C-GNTGACGGCGATTTTCTATTTTTAGTAACGG-TGACATTGACCT
Reference ( gi|25059 ) : TAACTTGCA-TC------GGA---TGCAAAATAATGTCGGT-A------A-G-C-GTTGACAGCGATTTTCTATTTTTAGTAACTG-TGACATTGACCT
gi|25053 : TAGCTTGCA-CC------GGA---TGTAAAATAATGCCGGT-A------A-G-C-GGTGACAGCGATTTTCTATTTTTAGTAACAG-TGACATTGATCT
gi|25054 : taTAACTTGCA-TC------GGA---TGGACAATAATGCCGGT-A------A-G-C-GTTGACAGCGATGTTCTATTTTTAGCAACAG-TGGCATTGACCT
gi|25055 : tgTAACTTGCA-TT------GAA---TACAAAATAATGCCGGT-A------A-G-C-GTTGACAGCGATTTTCTATTTTTACGAACAG-TGACATTAACCT
gi|25056 : tgTAACTTGCA-TC------GGA---TTGAAAATAATGCCGGT-A------A-G-C-GTTGACAGCGA-TTTCTATTTTTAGAAACAG-TAACATTGACCT
gi|25058 : tgTAACTTGCA-TG------GAA---TTGAAAATAATGCCGGT-A------A-G-C-GTTGACAGGGATTTTCTATTTTTAGTAACAG-TGACCTTGACCT
gi|25060 : taAATTTGAA-TC------GGA---TGGAAAATATTGTCGGT-A------G-GGC-GTTGAAAGCGATTTTCTATTTTTAGTAACGA-TGACATTGACCT
gi|25061 : AACTTGAA-TA------GGAAATTGGAAAATAATGCCGGT-AG-----A-G-C-GTTGAAAGCGATTTTC-AATTTTAGTAA-TGTTGACATTGACCT
gi|25062 : AACTTGAA-TC------GGA---TGGAAAATAAGGCGGGT-AG-----A-G-A-GGTGACAGTGATATTTTATTTATAGTAACGG-TGACTTTGAC
gi|25064 : AACTTGAA-TC------GGA---TGGAAAATGACGCTGGT-AG-----A-G-T-GTTGACAGCTAATTGATACGTTTAGTAACGG-TGACACGGAC
gi|25063 : AAGTTACA-TCAAAACAGAA---TGGAAAATACGGTGGGTTA------A-G-C-GGTGATTGTGATGTTCTATTTTTAGTAACGG-TGACTTTGACCT
gi|25065 : AAATTGTA-T-------------TGAAAAATAAGGCCGTT-AG-----A-G-C-GGTGATGGCGAT-----ATTTT-AGTAACGG-TGAAATTGACC
gi|25066 : ACTTGAA-TC------TGA---TGGGAAATAATGCTGGT-AG-----A-G-C-GTTGATATCGACTTACTTTTTTTAGTA
gi|25057 : TTGCAGTC------AGA---TGCAAAATAATGCCGGT-A------A-G-C-GTTGACAGCGATTTTCTATTTTAAGTAATAG-TGACATTAACCT
gi|25068 : tgtaCA-AC------GGA---TTAAAAAGAAGGGCGGA-AG-----A-G-C-GGTGACGGTGATTTTCTACTTTTAGTTACGG-TGACATTGAC
gi|25067 : CA-TT------CGA---TTAAAAATCAAGGCGGG-AC-----A-G-C-GGT-ACAGTGATTTTCTACTTTTAGTGACGG-TAATATTAAC
gi|25069 : CA-TT------GGA---TTAAAAAGCAGGACGGA-AG-----A-G-C-GGTAACGGTGATTTTCTCATTTTAGTAACGA-TGACCTTGAC
gi|25071 : A-TT------GGA---TGGGAAATTAGGGCGGT-A------AAG-C-GGTAACGGTGATTTTCTGTTTTTAGTAACGG-TGACACTGACCT
gi|25070 : A-TC------GGA---TG-GAAATAATACTGGT-A------AAG-C-GCTGACAGCGATTTTTTATTTTAAGTAACGG-TCAC
gi|25072 : A-TG------GAA---TGGAAAATAAAGACGAT-AT-----A-G-C-GGTGACAGTGCGTTTCTATTTTTAGTAA-TGCTAACATTGACCT
gi|25073 : ------GGA---TGGAATATATGGGCGGT-ATAGAGCA-G-C-GGTAACGGTGATTTTCTATTTTTAGTAACGT-TTACATTGA
gi|25074 : AAAATAAAAACGAT-AG-----A-G-C-GGTAACGGTGTTTTTCTACTTTTAGTAACGA-TGACATCGACCT
gi|25075 : -A------A-G-CTGTTGAGAGCATTTTTCTATTTTTAGTTACAG-TGATCTTGATCT
gi|25076 : -G-T-GTGGAAAGCATTTTTCTATCTTTAGTAACAG-TGACCTCGACCT
Alignments
lowQualScore : 111111
lowQualScore : 2 555555 333 1 0 666666 1 1 2
lowQualScore : . ...... ... . . ...... . . .
lowQualScore : 0 555555 333 0 1 000000 7 0 2
consensus : TAACTTGCA-TC------GGA---TGGAAAATAANGCCGGTA----G-AGC-GNTGACGGCGATTTTCTATTTTTAGTAACGGTGACATTGACCT
Reference ( family-732 ) : TAACTTGCA-TC------GGA---TGGAAAATAANGCCGGTA----G-AGC-GNTGACGGCGATTTTCTATTTTTAGTAACGGTGACATTGACCT
gi|25053 : TAGCTTGCA-CC------GGA---TGTAAAATAATGCCGGTA------AGC-GGTGACAGCGATTTTCTATTTTTAGTAACAGTGACATTGATCT
gi|25054 : taTAACTTGCA-TC------GGA---TGGACAATAATGCCGGTA------AGC-GTTGACAGCGATGTTCTATTTTTAGCAACAGTGGCATTGACCT
gi|25055 : tgTAACTTGCA-TT------GAA---TACAAAATAATGCCGGTA------AGC-GTTGACAGCGATTTTCTATTTTTACGAACAGTGACATTAACCT
gi|25056 : tgTAACTTGCA-TC------GGA---TTGAAAATAATGCCGGTA------AGC-GTTGACAGCGA-TTTCTATTTTTAGAAACAGTAACATTGACCT
gi|25057 : tgTTGCAGTC------AGA---TGCAAAATAATGCCGGTA------AGC-GTTGACAGCGATTTTCTATTTTAAGTAATAGTGACATTAACCT
gi|25058 : tgtaTAACTTGCA-TG------GAA---TTGAAAATAATGCCGGTA------AGC-GTTGACAGGGATTTTCTATTTTTAGTAACAGTGACCTTGACCT
gi|25059 : taTAACTTGCA-TC------GGA---TGCAAAATAATGTCGGTA------AGC-GTTGACAGCGATTTTCTATTTTTAGTAACTGTGACATTGACCT
gi|25060 : AATTTGAA-TC------GGA---TGGAAAATATTGTCGGTA----G-GGC-GTTGAAAGCGATTTTCTATTTTTAGTAACGATGACATTGACCT
gi|25061 : AACTTGAA-TA------GGAAATTGGAAAATAATGCCGGTA----G-AGC-GTTGAAAGCGATTTTC-AATTTTAGTAATGTTGACATTGACCT
gi|25062 : AACTTGAA-TC------GGA---TGGAAAATAAGGCGGGTA----G-AGA-GGTGACAGTGATATTTTATTTATAGTAACGGTGACTTTGAC
gi|25063 : AAGTTACA-TCAAAACAGAA---TGGAAAATACGGTGGGTT----A-AGC-GGTGATTGTGATGTTCTATTTTTAGTAACGGTGACTTTGACCT
gi|25064 : AACTTGAA-TC------GGA---TGGAAAATGACGCTGGTA----G-AGT-GTTGACAGCTAATTGATACGTTTAGTAACGGTGACACGGAC
gi|25065 : AAATTGTA-T-------------TGAAAAATAAGGCCGTTA----G-AGC-GGTGATGGCGA-----TA-TTTTAGTAACGGTGAAATTGACC
gi|25066 : ACTTGAA-TC------TGA---TGGGAAATAATGCTGGTA----G-AGC-GTTGATATCGACTTACTTTTTTTAGTA
gi|25067 : CA-TT------CGA---TTAAAAATCAAGGCGGGA----C-AGC-GGT-ACAGTGATTTTCTACTTTTAGTGACGGTAATATTAAC
gi|25068 : CA-AC------GGA---TTAAAAAGAAGGGCGGAA----G-AGC-GGTGACGGTGATTTTCTACTTTTAGTTACGGTGACATTGAC
gi|25069 : CA-TT------GGA---TTAAAAAGCAGGACGGAA----G-AGC-GGTAACGGTGATTTTCTCATTTTAGTAACGATGACCTTGAC
gi|25070 : A-TC------GGA---TGGAAA-TAATACTGGTA----A-AGC-GCTGACAGCGATTTTTTATTTTAAGTAACGGTCAC
gi|25071 : A-TT------GGA---TGGGAAATTAGGGCGGTA----A-AGC-GGTAACGGTGATTTTCTGTTTTTAGTAACGGTGACACTGACCT
gi|25072 : A-TG------GAA---TGGAAAATAAAGACGATA----T-AGC-GGTGACAGTGCGTTTCTATTTTTAGTAATGCTAACATTGACCT
gi|25073 : ------GGA---TGGAATATATGGGCGGTATAGAGCAGC-GGTAACGGTGATTTTCTATTTTTAGTAACGTTTACATTGA
gi|25074 : AAAATAAAAACGATA----G-AGC-GGTAACGGTGTTTTTCTACTTTTAGTAACGATGACATCGACCT
gi|25075 : -AGCTGTTGAGAGCATTTTTCTATTTTTAGTTACAGTGATCTTGATCT
gi|25076 : aTTTTCTATCTTTAGTAACAGTGACCTCGACCT
Alignments
lowQualScore : 111111
lowQualScore : 2 555555 333 1 0 666666 1 1 2
lowQualScore : . ...... ... . . ...... . . .
lowQualScore : 0 555555 333 0 1 000000 7 0 2
consensus : TAACTTGCA-TC------GGA---TGGAAAATAANGCCGGTA----G-AGC-GNTGACGGCGATTTTCTATTTTTAGTAACGGTGACATTGACCT
Reference ( family-732 ) : TAACTTGCA-TC------GGA---TGGAAAATAANGCCGGTA----G-AGC-GNTGACGGCGATTTTCTATTTTTAGTAACGGTGACATTGACCT
gi|25053 : TAGCTTGCA-CC------GGA---TGTAAAATAATGCCGGTA------AGC-GGTGACAGCGATTTTCTATTTTTAGTAACAGTGACATTGATCT
gi|25054 : taTAACTTGCA-TC------GGA---TGGACAATAATGCCGGTA------AGC-GTTGACAGCGATGTTCTATTTTTAGCAACAGTGGCATTGACCT
gi|25055 : tgTAACTTGCA-TT------GAA---TACAAAATAATGCCGGTA------AGC-GTTGACAGCGATTTTCTATTTTTACGAACAGTGACATTAACCT
gi|25056 : tgTAACTTGCA-TC------GGA---TTGAAAATAATGCCGGTA------AGC-GTTGACAGCGA-TTTCTATTTTTAGAAACAGTAACATTGACCT
gi|25057 : tgTTGCAGTC------AGA---TGCAAAATAATGCCGGTA------AGC-GTTGACAGCGATTTTCTATTTTAAGTAATAGTGACATTAACCT
gi|25058 : tgtaTAACTTGCA-TG------GAA---TTGAAAATAATGCCGGTA------AGC-GTTGACAGGGATTTTCTATTTTTAGTAACAGTGACCTTGACCT
gi|25059 : taTAACTTGCA-TC------GGA---TGCAAAATAATGTCGGTA------AGC-GTTGACAGCGATTTTCTATTTTTAGTAACTGTGACATTGACCT
gi|25060 : AATTTGAA-TC------GGA---TGGAAAATATTGTCGGTA----G-GGC-GTTGAAAGCGATTTTCTATTTTTAGTAACGATGACATTGACCT
gi|25061 : AACTTGAA-TA------GGAAATTGGAAAATAATGCCGGTA----G-AGC-GTTGAAAGCGATTTTC-AATTTTAGTAATGTTGACATTGACCT
gi|25062 : AACTTGAA-TC------GGA---TGGAAAATAAGGCGGGTA----G-AGA-GGTGACAGTGATATTTTATTTATAGTAACGGTGACTTTGAC
gi|25063 : AAGTTACA-TCAAAACAGAA---TGGAAAATACGGTGGGTT----A-AGC-GGTGATTGTGATGTTCTATTTTTAGTAACGGTGACTTTGACCT
gi|25064 : AACTTGAA-TC------GGA---TGGAAAATGACGCTGGTA----G-AGT-GTTGACAGCTAATTGATACGTTTAGTAACGGTGACACGGAC
gi|25065 : AAATTGTA-T-------------TGAAAAATAAGGCCGTTA----G-AGC-GGTGATGGCGA-----TA-TTTTAGTAACGGTGAAATTGACC
gi|25066 : ACTTGAA-TC------TGA---TGGGAAATAATGCTGGTA----G-AGC-GTTGATATCGACTTACTTTTTTTAGTA
gi|25067 : CA-TT------CGA---TTAAAAATCAAGGCGGGA----C-AGC-GGT-ACAGTGATTTTCTACTTTTAGTGACGGTAATATTAAC
gi|25068 : CA-AC------GGA---TTAAAAAGAAGGGCGGAA----G-AGC-GGTGACGGTGATTTTCTACTTTTAGTTACGGTGACATTGAC
gi|25069 : CA-TT------GGA---TTAAAAAGCAGGACGGAA----G-AGC-GGTAACGGTGATTTTCTCATTTTAGTAACGATGACCTTGAC
gi|25070 : A-TC------GGA---TGGAAA-TAATACTGGTA----A-AGC-GCTGACAGCGATTTTTTATTTTAAGTAACGGTCAC
gi|25071 : A-TT------GGA---TGGGAAATTAGGGCGGTA----A-AGC-GGTAACGGTGATTTTCTGTTTTTAGTAACGGTGACACTGACCT
gi|25072 : A-TG------GAA---TGGAAAATAAAGACGATA----T-AGC-GGTGACAGTGCGTTTCTATTTTTAGTAATGCTAACATTGACCT
gi|25073 : ------GGA---TGGAATATATGGGCGGTATAGAGCAGC-GGTAACGGTGATTTTCTATTTTTAGTAACGTTTACATTGA
gi|25074 : AAAATAAAAACGATA----G-AGC-GGTAACGGTGTTTTTCTACTTTTAGTAACGATGACATCGACCT
gi|25075 : -AGCTGTTGAGAGCATTTTTCTATTTTTAGTTACAGTGATCTTGATCT
gi|25076 : aTTTTCTATCTTTAGTAACAGTGACCTCGACCT
blockSeqs : G AAAACA AAT T TAGAGC T T A
blockSeqs : . . . T G . T A
blockSeqs : . . . T G . T A
blockSeqs : . . . T G . T A
blockSeqs : . . . T A . T A
blockSeqs : . . . T G . T A
blockSeqs : . . . T G . T A
blockSeqs : . . . T G . T A
blockSeqs : . . . G C . G A
blockSeqs : . . . G G . G T
blockSeqs : . . . C G . T A
blockSeqs : . . . G A . G G
blockSeqs : . . . T A . T A
blockSeqs : . . . A T . G A
blockSeqs : . . . G G . G G
blockSeqs : . . . G . . G G
blockSeqs : . . . T . . C A
blockSeqs : . . . G . . G G
blockSeqs : . . . A . . G A
blockSeqs : . . G . . G G
blockSeqs : A . . G G
blockSeqs : . T A
blockSeqCons : G*****
originalCons : TAACTTGCA-TC------GGA---TGGAAAATAANGCCGGTA----G-AGC-GNTGACGGCGATTTTCTATTTTTAGTAACGGTGACATTGACCT
finalCons : TAACTTGCA-TC------GGA---TGGAAAATAANGCCGGTAG-----AGC-GNTGACGGCGATTTTCTATTTTTAGTAACGGTGACATTGACCT
Alignments
lowQualScore : 111111
lowQualScore : 2 555555 333 1 0 666666 1 1 2
lowQualScore : . ...... ... . . ...... . . .
lowQualScore : 0 555555 333 0 1 000000 7 0 2
consensus : TAACTTGCA-TC------GGA---TGGAAAATAANGCCGGTA----G-AGC-GNTGACGGCGATTTTCTATTTTTAGTAACGGTGACATTGACCT
Reference ( family-732 ) : TAACTTGCA-TC------GGA---TGGAAAATAANGCCGGTA----G-AGC-GNTGACGGCGATTTTCTATTTTTAGTAACGGTGACATTGACCT
gi|25053 : TAGCTTGCA-CC------GGA---TGTAAAATAATGCCGGTA------AGC-GGTGACAGCGATTTTCTATTTTTAGTAACAGTGACATTGATCT
gi|25054 : taTAACTTGCA-TC------GGA---TGGACAATAATGCCGGTA------AGC-GTTGACAGCGATGTTCTATTTTTAGCAACAGTGGCATTGACCT
gi|25055 : tgTAACTTGCA-TT------GAA---TACAAAATAATGCCGGTA------AGC-GTTGACAGCGATTTTCTATTTTTACGAACAGTGACATTAACCT
gi|25056 : tgTAACTTGCA-TC------GGA---TTGAAAATAATGCCGGTA------AGC-GTTGACAGCGA-TTTCTATTTTTAGAAACAGTAACATTGACCT
gi|25057 : tgTTGCAGTC------AGA---TGCAAAATAATGCCGGTA------AGC-GTTGACAGCGATTTTCTATTTTAAGTAATAGTGACATTAACCT
gi|25058 : tgtaTAACTTGCA-TG------GAA---TTGAAAATAATGCCGGTA------AGC-GTTGACAGGGATTTTCTATTTTTAGTAACAGTGACCTTGACCT
gi|25059 : taTAACTTGCA-TC------GGA---TGCAAAATAATGTCGGTA------AGC-GTTGACAGCGATTTTCTATTTTTAGTAACTGTGACATTGACCT
gi|25060 : AATTTGAA-TC------GGA---TGGAAAATATTGTCGGTA----G-GGC-GTTGAAAGCGATTTTCTATTTTTAGTAACGATGACATTGACCT
gi|25061 : AACTTGAA-TA------GGAAATTGGAAAATAATGCCGGTA----G-AGC-GTTGAAAGCGATTTTC-AATTTTAGTAATGTTGACATTGACCT
gi|25062 : AACTTGAA-TC------GGA---TGGAAAATAAGGCGGGTA----G-AGA-GGTGACAGTGATATTTTATTTATAGTAACGGTGACTTTGAC
gi|25063 : AAGTTACA-TCAAAACAGAA---TGGAAAATACGGTGGGTT----A-AGC-GGTGATTGTGATGTTCTATTTTTAGTAACGGTGACTTTGACCT
gi|25064 : AACTTGAA-TC------GGA---TGGAAAATGACGCTGGTA----G-AGT-GTTGACAGCTAATTGATACGTTTAGTAACGGTGACACGGAC
gi|25065 : AAATTGTA-T-------------TGAAAAATAAGGCCGTTA----G-AGC-GGTGATGGCGA-----TA-TTTTAGTAACGGTGAAATTGACC
gi|25066 : ACTTGAA-TC------TGA---TGGGAAATAATGCTGGTA----G-AGC-GTTGATATCGACTTACTTTTTTTAGTA
gi|25067 : CA-TT------CGA---TTAAAAATCAAGGCGGGA----C-AGC-GGT-ACAGTGATTTTCTACTTTTAGTGACGGTAATATTAAC
gi|25068 : CA-AC------GGA---TTAAAAAGAAGGGCGGAA----G-AGC-GGTGACGGTGATTTTCTACTTTTAGTTACGGTGACATTGAC
gi|25069 : CA-TT------GGA---TTAAAAAGCAGGACGGAA----G-AGC-GGTAACGGTGATTTTCTCATTTTAGTAACGATGACCTTGAC
gi|25070 : A-TC------GGA---TGGAAA-TAATACTGGTA----A-AGC-GCTGACAGCGATTTTTTATTTTAAGTAACGGTCAC
gi|25071 : A-TT------GGA---TGGGAAATTAGGGCGGTA----A-AGC-GGTAACGGTGATTTTCTGTTTTTAGTAACGGTGACACTGACCT
gi|25072 : A-TG------GAA---TGGAAAATAAAGACGATA----T-AGC-GGTGACAGTGCGTTTCTATTTTTAGTAATGCTAACATTGACCT
gi|25073 : ------GGA---TGGAATATATGGGCGGTATAGAGCAGC-GGTAACGGTGATTTTCTATTTTTAGTAACGTTTACATTGA
gi|25074 : AAAATAAAAACGATA----G-AGC-GGTAACGGTGTTTTTCTACTTTTAGTAACGATGACATCGACCT
gi|25075 : -AGCTGTTGAGAGCATTTTTCTATTTTTAGTTACAGTGATCTTGATCT
gi|25076 : aTTTTCTATCTTTAGTAACAGTGACCTCGACCT