lowQualScore : 4444444444444444444 1
lowQualScore : 2 77 666 1 1 3333333333333333333 22 1 1 2 4 66 8 0 5 5 4 1 1 7 999 3 0 1 1 1 333 66666666 666 2
lowQualScore : . .. ... . . ................... .. . . . . .. . . . . . . . . ... . . . . . ... ........ ... .
lowQualScore : 5 99 777 9 9 5555555555555555555 55 8 8 8 8 55 6 4 4 9 4 7 7 7 333 5 4 6 7 7 000 88888888 888 6
consensus : TGGAAAATTGTACAC-ACCGT--AC---C-TT-TC--A--G--A--T-CACN--A--TAGA-TA-CAAAACTAAGAGCNTTTCAATACAAATACATNATGAGAATTNTA-CCTA-ACAACCAA-N-T-T-CTATATAAATGC-A---AN-A-----TANG-TAATACAAGTT
Reference ( gi|41133 ) : TGGAAAGTTGTACAC-ACCGT--AC---C-TT-TC--A--G--G--T-CACAT-A--TAGA-TA-CAAAATTACGCGCTTTTCAATACAAATATATAATGCGAATTATA-CCTA-ACAACCAA-A-T-T-CTGTATAAATGC-A---AC-A-----TATG-TAATACAAGTT
gi|41135 : TGGAAAGTTGTACAC-ATCGT--AC---C-TA-TC--A--G--A--T-CACTA-A--TAGA-TA-CAAAATTACGCGCTTTTCAATATAAATATATAGTGCGAATTATATCTTA-ATAACAAA-T-T-T-CTGTATAAATGC-A---AC-A-----TATG-CAATACAATTT
gi|41134 : TGGAAAGTTGTACAC-ACTGT--AC---C-TT-TT--A--G--A--T-CACTA-A--TAGA-TA-CAAAAGTACGAGCTTTTTAATACAAATATATTGTGCGAATTGTA-CCTA-ACAA-CAA-A-T-TCCTCTATAAATGC-A---AC-A-----TATG-TAATACAAGTT
gi|41137 : TGGAATGTTGTACAC-ACCGT--AC---C-TT-TT--A--A--A--T-C-CTTAA--TTGA-TA-CAAAAATAAGAGCTTTTCAATACAAATGTATTATGCGAATTGTA-CCAA-ACAA-CAA-A-T-TCCTGTATAAATGC-A---AC-A-----TATG-TAATACAAGTT
gi|41136 : TGGAAAGTTGTACAC-ACCTT--AC---C-TT-TT--A--G--A--T-CACTA-A--TAGA-TA-CAATCTTACGCGCGTTCCATTACAAATATACTAGGTGAATTATA-CCTA-ACAA-CAA-A-T-TCCTATATAAATGA-A---AA-A-----TATG-TAATACAAGTT
gi|41138 : TGGACAGTTGTAAAC-ACCGT--GCGGCC-TT-TC--A--G--A--T-CACTA-A--TAAA-TA-CAAGATTACGCACTTTCCAATAAAAATGTATAATGAGAATTATA-CCTA-ACAA-CAA-A-T-TCCTATATAAATGC-ATATGCGA-----TATG-CAATACAAGT
gi|41139 : TGGAAAATTGTACAC-TCCGT--AC---C-TT-TT--A--T--A--T-CTTTA-A--CAGA-TATCAAGAT-ACACGCCTTTTAATACAAATATATAATGCAAATTATA-ACTA-ATAATGAA-G-T-C-CTGTATAAATGC-A---AC-ATATATTATG-TAATACAAGTT
gi|41140 : TGGAAAACTGCACAC-ACCGT--AC---C-TT-TT--T--G--A--T-CCCTA-A--TATG-TA-CAAAAT-ACGCGCTTT-CAATGCACATAACTAATGCGAATTATA-CATA-ACAA-CAA-G-T-TCCTGTATAAATAC-A---AC-A-----TA
gi|41141 : TGGAAAAGTATACAT-AATCT--AC---CCTT-TC--AATG--T--T-TA----A--TAAA-TA-CAAAATTAAGAGCATTCCAATACAAATACATAATGAGAATCTTA-CCTA-ATAATGAA-T-T-T-CTGTATAAATGT-T---AT-A-----TTTA-TAATACAAGTT
gi|41143 : TGGAAAATTAT-C-C-ATTGTCTAC---C-TT-TCGAA--A--G--T-AAC---A--TAGA-CA-AAAAACTAAGATCATTTCAATATAAATACATAATGAGAATTTTA-CCTA-CTAACCAGTT-T-T-TTATATAAATGT-A---AA-A-----TAGT-TAATTCAAGT
gi|41142 : TGGAAAATTGTGCAC-ACTTT--AC---C-AA-TC--A--A--G--T-CTTTA-A--TAAA-AA-CAAAATTAAGGGCGTTTCAATATAAATACTTGATGAGAATAATC-CCAA-ACAA-CAA-A-TAT-ATATTTAAACGT-A---AT-A-----TCAA-TAACACAAGTT
gi|41144 : TGGAAAATTATTCATTGTC-T--AC---C-TT-TCAAA--A--G----CAC-T-C--TAGA-CA-CAAAACGAAGATCATTTCAATATAAATACATAATGAGACTTTTA-CCTA-TTAACCAG-T-T-T-TTATCTAAATAT-A---AA-A-----TAAGTTAATTGAAGT
gi|41145 : GGAAAACTGTGCAT-AATGT--ATATAT-TTATC--A--A--GGTT-TA----A--TGAA-TA-CAAAATTAAGAGCAATTCAATATAAATACTTGCGGAGAATAATC-TCAA-ACAACTAA-C-T-T-CTATTTAAATGT-A---AT-A-----TTAA-TAACACAAGTT
gi|41146 : TATAT-ACTAT--AC---C-TT-TC--A--G--A--TCCACA--A--TCGACTC-CAAAA-TAAGAAATTTTCAGTACAAATATCTTATGAGAATAGTA-CC-A-ACAAACAA-A-T-CGCTTTTGAAATGC-A---A
gi|41147 : C-ACAAT--AC---C-TT-TT--A--T--A--T-CTGAA-A--TAAA-TA-CAAAGATACGCGCCTTTCAATACAAATATTTAATGCGAATTATT-CCTA-ATAACGAA-T-T-T-CTGTATAAATGA-A---AC-A-----TATG-TAATACAAGTT
gi|41148 : C-ACTGTCTAC---C-TT-TC--AAAG--G--T--ACA--A--TAGA-CA-CAAAACTAAGATCGTTTCAATACAAATACATTATGAGAATTTTA-CCTA-CTAACACG-T-T-T-TTATCTAAATGT-A---AA-A-----TAGT-TAATTCAAGT
gi|41149 : C-ACTGTCTAC---C-TT-TC--A--AAAG--T--AC-C-A--TTGA-AA-CAAAACTAAGATCATTTCAATACAAATACATAATGAGAATTTCA-CCTA-CTAACAAG-T-T-T-TTATCTAAATGT-A---AA-A-----TAGT-TAACTCAAGT
gi|41151 : T--AC---C-TT-TC--A--A--AA-T-TACA--A--TAGA-CA-CAAAACTAAGATCATTTCAATACAAATACATTATGAGAATTTTA-CCTA-CTGACCAA-T-T-T-TTATCTAAATGT-A---AA-T-----TAGT-TAATTCAAGT
gi|41150 : T--AC---C-TT-TC--A--A--AA-T-TACA--A--TAGA-CA-CAAAACTAAGATCATTTCAATACAAATACATTATGAGAATTTTA-CCTA-CTAACCAG-T-T-T-TTATCTAAATGT-A---AA-T-----TAGT-TAATTCAAGT
gi|41154 : T--AC---C-TT-TCAAA--A--G--T--ACA--A--TAGA-CA-CAAAACTAAGATCATTTCAATGCAAATACATTATGAGAATTTTA-CCTA-CTTACCAG-T-T-T-TTATCTAAATGT-A---AA-T-----TAGT-TAATAAAAG
gi|41152 : T--GC---C-TT-TA--A--A--T--T-CA-AT-AATTA-A-TC-CAAAACTACGCGAATTCCAATACAAGTTCATTATGCGTGTAATA-CCT--ACAAACAA-A-TAT-CTGTACAAATGCAA---AC-T-----TGTA-CAAT-CAAAT
gi|41155 : T--AC---C-TT-TT--A--A--C--T-CAACC-A--TTGA-TA-CAAAACCACGCGAATTCCAATACAAGTATAGTATGAGGATTGTA-CGGACACACACAC-ATT-T-CTTTACAAATGC-A---A
gi|41153 : -A--TAGA-CA-CAAAATTAAGATCATTTCAATACAAATACAGTATGAGAATTTTA-CGTA-TTAACCAG-T-T-T-TTATCTAAATGT-A---A--A-----TTTGTTAATTCAAGT
gi|41156 : tagcttttaaatgtgtaTGCAAATTGTA-CCTA-ACAACAGA-A-T-C-CTGTATAAATGC-A---AC-A-----TATG-TAATACAAGTT
Alignments
lowQualScore : 22222222222222222222222
lowQualScore : 2 77 333 1 1 1 66666666666666666666666 1 1 5 1 11 2 1 0 1 1 1 1 5 22 1 1 1 1 5555 44444 444 0
lowQualScore : . .. ... . . . ....................... . . . . .. . . . . . . . . .. . . . . .... ..... ... .
lowQualScore : 4 22 000 7 7 7 88888888888888888888888 7 7 3 4 11 7 0 5 0 7 7 7 2 77 7 7 2 7 8888 88888 999 1
consensus : TGGAAAGTTGTACAC-ACCGT--AC---C-T-TTC-A--GA--T-C--A-----CN--A-TAGA-TA-CAAAACTAAGAGCNTTTCAATACAAATACATNATGAGAATTNTA-CCTA-ACA-ACNAA-TT-T-CTGTATAAATGCA-A---NA-----TANG-TAATACAAGTT
Reference ( family-726 ) : TGGAAAATTGTACAC-ACCGT--AC---C-T-TTC-A--GA--T-C--A-----CN--A-TAGA-TA-CAAAACTAAGAGCNTTTCAATACAAATACATNATGAGAATTNTA-CCTA-ACA-ACCAA-NT-T-CTATATAAATGCA-A---NA-----TANG-TAATACAAGTT
gi|41133 : TGGAAAGTTGTACAC-ACCGT--AC---C-T-TTC-A--GG--T-C--A-----CAT-A-TAGA-TA-CAAAATTACGCGCTTTTCAATACAAATATATAATGCGAATTATA-CCTA-ACA-ACCAA-AT-T-CTGTATAAATGCA-A---CA-----TATG-TAATACAAGTT
gi|41134 : TGGAAAGTTGTACAC-ACTGT--AC---C-T-TTT-A--GA--T-C--A-----CT--AATAGA-TA-CAAAAGTACGAGCTTTTTAATACAAATATATTGTGCGAATTGTA-CCTA-ACA-ACAAA-TT-C-CTCTATAAATGCA-A---CA-----TATG-TAATACAAGTT
gi|41135 : TGGAAAGTTGTACAC-ATCGT--AC---C-T-ATC-A--GA--T-C--A-----CT--AATAGA-TA-CAAAATTACGCGCTTTTCAATATAAATATATAGTGCGAATTATATCTTA-ATA-ACAAA-TT-T-CTGTATAAATGCA-A---CA-----TATG-CAATACAATTT
gi|41136 : TGGAAAGTTGTACAC-ACCTT--AC---C-T-TTT-A--GA--T-C--A-----CT--AATAGA-TA-CAATCTTACGCGCGTTCCATTACAAATATACTAGGTGAATTATA-CCTA-ACA-ACAAA-TT-C-CTATATAAATGAA-A---AA-----TATG-TAATACAAGTT
gi|41137 : TGGAATGTTGTACAC-ACCGT--AC---C-T-TTT-A--AA--T-C--------CTTAA-TTGA-TA-CAAAAATAAGAGCTTTTCAATACAAATGTATTATGCGAATTGTA-CCAA-ACA-ACAAA-TT-C-CTGTATAAATGCA-A---CA-----TATG-TAATACAAGTT
gi|41138 : TGGACAGTTGTAAAC-ACCGT--GCGGCC-T-TTC-A--GA--T-C--A-----CT--AATAAA-TA-CAAGATTACGCACTTTCCAATAAAAATGTATAATGAGAATTATA-CCTA-ACA-ACAAA-TT-C-CTATATAAATGCATATGCGA-----TATG-CAATACAAGT
gi|41139 : TGGAAAATTGTACAC-TCCGT--AC---C-T-TTT-A--TA--T-C--T-----TT--AACAGA-TATCAAGA-TACACGCCTTTTAATACAAATATATAATGCAAATTATA-ACTA-ATA-ATGAA-GT-C-CTGTATAAATGCA-A---CATATATTATG-TAATACAAGTT
gi|41140 : TGGAAAACTGCACAC-ACCGT--AC---C-T-TTT-T--GA--T-C--C-----CT--AATATG-TA-CAAAA-TACGCGC-TTTCAATGCACATAACTAATGCGAATTATA-CATA-ACA-ACAAG-TT-C-CTGTATAAATACA-A---CA-----TA
gi|41141 : TGGAAAAGTATACAT-AATCT--AC---CCT-TTC-AATGT--T-T--A---------A-TAAA-TA-CAAAATTAAGAGCATTCCAATACAAATACATAATGAGAATCTTA-CCTA-ATA-ATGAA-TT-T-CTGTATAAATGTT-A---TA-----TTTA-TAATACAAGTT
gi|41142 : TGGAAAATTGTGCAC-ACTTT--AC---C-A-ATC-A--AG--T-C--T-----TT--AATAAA-AA-CAAAATTAAGGGCGTTTCAATATAAATACTTGATGAGAATAATC-CCAA-ACA-ACAAA-TA-T-ATATTTAAACGTA-A---TA-----TCAA-TAACACAAGTT
gi|41143 : TGGAAAATTAT-C-C-ATTGTCTAC---C-T-TTCGA--AA--G-T--A-----AC--A-TAGA-CA-AAAAACTAAGATCATTTCAATATAAATACATAATGAGAATTTTA-CCTA-CTA-ACCAGTTT-T-TTATATAAATGTA-A---AA-----TAGT-TAATTCAAGT
gi|41144 : TGGAAAATTATTCATTGTC-T--AC---C-T-TTC-A--AAA-G-C--A-----CT--C-TAGA-CA-CAAAACGAAGATCATTTCAATATAAATACATAATGAGACTTTTA-CCTA-TTA-ACCAG-TT-T-TTATCTAAATATA-A---AA-----TAAGTTAATTGAAGT
gi|41145 : GGAAAACTGTGCAT-AATGT--AT---A-TATTT-A------T-C--AAGGTTTA--A-TGAA-TA-CAAAATTAAGAGCAATTCAATATAAATACTTGCGGAGAATAATC-TCAA-ACA-ACTAA-CT-T-CTATTTAAATGTA-A---TA-----TTAA-TAACACAAGTT
gi|41146 : TATAT-ACTAT--AC---C-T-TTC-A--GA--T-CC-A-----CA--A-TCGACTC-CAAAA-TAAGAAATTTTCAGTACAAATATCTTATGAGAATAGTA-CC-A-ACA-AACAA-AT-CGCTTTTGAAATGCA-A---
gi|41147 : C-ACAAT--AC---C-T-TTT-A--TA--T-CTGA------A--A-TAAA-TA-CAAAGATACGCGCCTTTCAATACAAATATTTAATGCGAATTATT-CCTA-ATA-ACGAA-TT-T-CTGTATAAATGAA-A---CA-----TATG-TAATACAAGTT
gi|41148 : C-ACTGTCTAC---C-T-TTC-AAAGG--T----A-----CA--A-TAGA-CA-CAAAACTAAGATCGTTTCAATACAAATACATTATGAGAATTTTA-CCTA-CTA-ACACG-TT-T-TTATCTAAATGTA-A---AA-----TAGT-TAATTCAAGT
gi|41149 : C-ACTGTCTAC---C-T-TTC-A--AAAGT----A-----CC--A-TTGA-AA-CAAAACTAAGATCATTTCAATACAAATACATAATGAGAATTTCA-CCTA-CTA-ACAAG-TT-T-TTATCTAAATGTA-A---AA-----TAGT-TAACTCAAGT
gi|41150 : T--AC---C-T-TTC-A--AAA-T-T--A-----CA--A-TAGA-CA-CAAAACTAAGATCATTTCAATACAAATACATTATGAGAATTTTA-CCTA-CTA-ACCAG-TT-T-TTATCTAAATGTA-A---AT-----TAGT-TAATTCAAGT
gi|41151 : T--AC---C-T-TTC-A--AAA-T-T--A-----CA--A-TAGA-CA-CAAAACTAAGATCATTTCAATACAAATACATTATGAGAATTTTA-CCTA-CTG-ACCAA-TT-T-TTATCTAAATGTA-A---AT-----TAGT-TAATTCAAGT
gi|41152 : T--GC---C-T-TTA-A--AT--T-C--AA----TA--A-TTAA-TC-CAAAACTACGCGAATTCCAATACAAGTTCATTATGCGTGTAATA-CCT--ACA-AACAA-ATAT-CTGTACAAATGCA-A---
gi|41153 : T--AG---C-T-TTT-A--AA--TGT--G-----TA--A-TAGA-CA-CAAAATTAAGATCATTTCAATACAAATACAGTATGAGAATTTTA-CGTA-TTA-ACCAG-TT-T-TTATCTAAATGTA-A----A-----TTTGTTAATTCAAGTacttgtacaatcaaat
gi|41154 : T--AC---C-T-TTC-A--AAAGT----A-----CA--A-TAGA-CA-CAAAACTAAGATCATTTCAATGCAAATACATTATGAGAATTTTA-CCTA-CTT-ACCAG-TT-T-TTATCTAAATGTA-A---AT-----TAGT-TAATAAAAG
gi|41155 : T--AC---C-T-TTT-A--AC--T-C--AA----CC--A-TTGA-TA-CAAAACCACGCGAATTCCAATACAAGTATAGTATGAGGATTGTA-CGGACACACACACA-TT-T-CTTTACAAATGCA-A---
gi|41156 : AATTGTA-CCTA-ACA-ACAGA-AT-C-CTGTATAAATGCA-A---CA-----TATG-TAATACAAGTT
Alignments
lowQualScore : 22222222222222222222222
lowQualScore : 2 77 333 1 1 1 66666666666666666666666 1 1 5 1 11 2 1 0 1 1 2222 1 1 1 222 0 1 1 5555 44444 444 0
lowQualScore : . .. ... . . . ....................... . . . . .. . . . . . .... . . . ... . . . .... ..... ... .
lowQualScore : 4 22 000 7 7 7 88888888888888888888888 7 7 3 4 11 7 0 5 0 7 5555 7 0 7 999 1 2 7 8888 88888 999 1
consensus : TGGAAAGTTGTACAC-ACCGT--AC---C-T-TTC-A--GA--T-C--A-----CN--A-TAGA-TA-CAAAACTAAGAGCNTTTCAATACAAATACATNATGAGAATTNTA-CCTA-AC-A-ACAAA-T---TTCTGTATAAATGCA-A---NA-----TANG-TAATACAAGTT
Reference ( family-726 ) : TGGAAAGTTGTACAC-ACCGT--AC---C-T-TTC-A--GA--T-C--A-----CN--A-TAGA-TA-CAAAACTAAGAGCNTTTCAATACAAATACATNATGAGAATTNTA-CCTA-AC-A-ACNAA-T---TTCTGTATAAATGCA-A---NA-----TANG-TAATACAAGTT
gi|41133 : TGGAAAGTTGTACAC-ACCGT--AC---C-T-TTC-A--GG--T-C--A-----CAT-A-TAGA-TA-CAAAATTACGCGCTTTTCAATACAAATATATAATGCGAATTATA-CCTA-AC-A-ACCAA-A---TTCTGTATAAATGCA-A---CA-----TATG-TAATACAAGTT
gi|41134 : TGGAAAGTTGTACAC-ACTGT--AC---C-T-TTT-A--GA--T-C--A-----CT--AATAGA-TA-CAAAAGTACGAGCTTTTTAATACAAATATATTGTGCGAATTGTA-CCTA-AC-A-ACAAA-T---TCCTCTATAAATGCA-A---CA-----TATG-TAATACAAGTT
gi|41135 : TGGAAAGTTGTACAC-ATCGT--AC---C-T-ATC-A--GA--T-C--A-----CT--AATAGA-TA-CAAAATTACGCGCTTTTCAATATAAATATATAGTGCGAATTATATCTTA-AT-A-ACAAA-T---TTCTGTATAAATGCA-A---CA-----TATG-CAATACAATTT
gi|41136 : TGGAAAGTTGTACAC-ACCTT--AC---C-T-TTT-A--GA--T-C--A-----CT--AATAGA-TA-CAATCTTACGCGCGTTCCATTACAAATATACTAGGTGAATTATA-CCTA-AC-A-ACAAA-T---TCCTATATAAATGAA-A---AA-----TATG-TAATACAAGTT
gi|41137 : TGGAATGTTGTACAC-ACCGT--AC---C-T-TTT-A--AA--T-C--------CTTAA-TTGA-TA-CAAAAATAAGAGCTTTTCAATACAAATGTATTATGCGAATTGTA-CCAA-AC-A-ACAAA-T---TCCTGTATAAATGCA-A---CA-----TATG-TAATACAAGTT
gi|41138 : TGGACAGTTGTAAAC-ACCGT--GCGGCC-T-TTC-A--GA--T-C--A-----CT--AATAAA-TA-CAAGATTACGCACTTTCCAATAAAAATGTATAATGAGAATTATA-CCTA-AC-A-ACAAA-T---TCCTATATAAATGCATATGCGA-----TATG-CAATACAAGT
gi|41139 : TGGAAAATTGTACAC-TCCGT--AC---C-T-TTT-A--TA--T-C--T-----TT--AACAGA-TATCAAGA-TACACGCCTTTTAATACAAATATATAATGCAAATTATA-ACTA-AT-A-ATGAA-G---TCCTGTATAAATGCA-A---CATATATTATG-TAATACAAGTT
gi|41140 : TGGAAAACTGCACAC-ACCGT--AC---C-T-TTT-T--GA--T-C--C-----CT--AATATG-TA-CAAAA-TACGCGC-TTTCAATGCACATAACTAATGCGAATTATA-CATA-AC-A-ACAAG-T---TCCTGTATAAATACA-A---CA-----TA
gi|41141 : TGGAAAAGTATACAT-AATCT--AC---CCT-TTC-AATGT--T-T--A---------A-TAAA-TA-CAAAATTAAGAGCATTCCAATACAAATACATAATGAGAATCTTA-CCTA-AT-A-ATGAA-T---TTCTGTATAAATGTT-A---TA-----TTTA-TAATACAAGTT
gi|41142 : TGGAAAATTGTGCAC-ACTTT--AC---C-A-ATC-A--AG--T-C--T-----TT--AATAAA-AA-CAAAATTAAGGGCGTTTCAATATAAATACTTGATGAGAATAATC-CCAA-AC-A-ACAAA-T---ATATATTTAAACGTA-A---TA-----TCAA-TAACACAAGTT
gi|41143 : TGGAAAATTAT-C-C-ATTGTCTAC---C-T-TTCGA--AA--G-T--A-----AC--A-TAGA-CA-AAAAACTAAGATCATTTCAATATAAATACATAATGAGAATTTTA-CCTA-CT-A-ACCAGTT---TTTTATATAAATGTA-A---AA-----TAGT-TAATTCAAGT
gi|41144 : TGGAAAATTATTCATTGTC-T--AC---C-T-TTC-A--AAA-G-C--A-----CT--C-TAGA-CA-CAAAACGAAGATCATTTCAATATAAATACATAATGAGACTTTTA-CCTA-TT-A-ACCAG-T---TTTTATCTAAATATA-A---AA-----TAAGTTAATTGAAGT
gi|41145 : GGAAAACTGTGCAT-AATGT--AT---A-TATTT-A------T-C--AAGGTTTA--A-TGAA-TA-CAAAATTAAGAGCAATTCAATATAAATACTTGCGGAGAATAATC-TCAA-AC-A-ACTAA-C---TTCTATTTAAATGTA-A---TA-----TTAA-TAACACAAGTT
gi|41146 : TATAT-ACTAT--AC---C-T-TTC-A--GA--T-CC-A-----CA--A-TCGACTC-CAAAA-TAAGAAATTTTCAGTACAAATATCTTATGAGAATAGTA-CC-A-ACAA-ACAAA-TCGCTTTTG---AAATGCA-A---
gi|41147 : C-ACAAT--AC---C-T-TTT-A--TA--T-CTGA------A--A-TAAA-TA-CAAAGATACGCGCCTTTCAATACAAATATTTAATGCGAATTATT-CCTA-AT-A-ACGAA-T---TTCTGTATAAATGAA-A---CA-----TATG-TAATACAAGTT
gi|41148 : C-ACTGTCTAC---C-T-TTC-AAAGG--T----A-----CA--A-TAGA-CA-CAAAACTAAGATCGTTTCAATACAAATACATTATGAGAATTTTA-CCTA-CT-A-ACACG-T---TTTTATCTAAATGTA-A---AA-----TAGT-TAATTCAAGT
gi|41149 : C-ACTGTCTAC---C-T-TTC-A--AAAGT----A-----CC--A-TTGA-AA-CAAAACTAAGATCATTTCAATACAAATACATAATGAGAATTTCA-CCTA-CT-A-ACAAG-T---TTTTATCTAAATGTA-A---AA-----TAGT-TAACTCAAGT
gi|41150 : T--AC---C-T-TTC-A--AAA-T-T--A-----CA--A-TAGA-CA-CAAAACTAAGATCATTTCAATACAAATACATTATGAGAATTTTA-CCTA-CT-A-ACCAG-T---TTTTATCTAAATGTA-A---AT-----TAGT-TAATTCAAGT
gi|41151 : T--AC---C-T-TTC-A--AAA-T-T--A-----CA--A-TAGA-CA-CAAAACTAAGATCATTTCAATACAAATACATTATGAGAATTTTA-CCTA-CT-G-ACCAA-T---TTTTATCTAAATGTA-A---AT-----TAGT-TAATTCAAGT
gi|41152 : T--GC---C-T-TTA-A--AT--T-C--AA----TA--A-TTAA-TC-CAAAACTACGCGAATTCCAATACAAGTTCATTATGCGTGTAATA-CCTA-CA-A-ACAAA-T---ATCTGTACAAATGCA-A---
gi|41153 : T--AG---C-T-TTT-A--AA--TGT--G-----TA--A-TAGA-CA-CAAAATTAAGATCATTTCAATACAAATACAGTATGAGAATTTTA-CGTA-TT-A-ACCAG-T---TTTTATCTAAATGTA-A----A-----TTTGTTAATTCAAGTacttgtacaatcaaat
gi|41154 : T--AC---C-T-TTC-A--AAAGT----A-----CA--A-TAGA-CA-CAAAACTAAGATCATTTCAATGCAAATACATTATGAGAATTTTA-CCTA-CT-T-ACCAG-T---TTTTATCTAAATGTA-A---AT-----TAGT-TAATAAAAG
gi|41155 : T--AC---C-T-TTT-A--AC--T-C--AA----CC--A-TTGA-TA-CAAAACCACGCGAATTCCAATACAAGTATAGTATGAGGATTGTA-CGGACAC-ACACACA-T---TTCTTTACAAATGCA-A---
gi|41156 : AATTGTA-CCTA-AC-A-ACAGA-A---TCCTGTATAAATGCA-A---CA-----TATG-TAATACAAGTT
Alignments
lowQualScore : 22222222222222222222222
lowQualScore : 2 77 333 1 1 1 66666666666666666666666 1 1 5 1 11 2 1 0 1 1 2222 1 1 1 222 0 1 1 5555 44444 444 0
lowQualScore : . .. ... . . . ....................... . . . . .. . . . . . .... . . . ... . . . .... ..... ... .
lowQualScore : 4 22 000 7 7 7 88888888888888888888888 7 7 3 4 11 7 0 5 0 7 5555 7 0 7 999 1 2 7 8888 88888 999 1
consensus : TGGAAAGTTGTACAC-ACCGT--AC---C-T-TTC-A--GA--T-C--A-----CN--A-TAGA-TA-CAAAACTAAGAGCNTTTCAATACAAATACATNATGAGAATTNTA-CCTA-AC-A-ACAAA-T---TTCTGTATAAATGCA-A---NA-----TANG-TAATACAAGTT
Reference ( family-726 ) : TGGAAAGTTGTACAC-ACCGT--AC---C-T-TTC-A--GA--T-C--A-----CN--A-TAGA-TA-CAAAACTAAGAGCNTTTCAATACAAATACATNATGAGAATTNTA-CCTA-AC-A-ACAAA-T---TTCTGTATAAATGCA-A---NA-----TANG-TAATACAAGTT
gi|41133 : TGGAAAGTTGTACAC-ACCGT--AC---C-T-TTC-A--GG--T-C--A-----CAT-A-TAGA-TA-CAAAATTACGCGCTTTTCAATACAAATATATAATGCGAATTATA-CCTA-AC-A-ACCAA-A---TTCTGTATAAATGCA-A---CA-----TATG-TAATACAAGTT
gi|41134 : TGGAAAGTTGTACAC-ACTGT--AC---C-T-TTT-A--GA--T-C--A-----CT--AATAGA-TA-CAAAAGTACGAGCTTTTTAATACAAATATATTGTGCGAATTGTA-CCTA-AC-A-ACAAA-T---TCCTCTATAAATGCA-A---CA-----TATG-TAATACAAGTT
gi|41135 : TGGAAAGTTGTACAC-ATCGT--AC---C-T-ATC-A--GA--T-C--A-----CT--AATAGA-TA-CAAAATTACGCGCTTTTCAATATAAATATATAGTGCGAATTATATCTTA-AT-A-ACAAA-T---TTCTGTATAAATGCA-A---CA-----TATG-CAATACAATTT
gi|41136 : TGGAAAGTTGTACAC-ACCTT--AC---C-T-TTT-A--GA--T-C--A-----CT--AATAGA-TA-CAATCTTACGCGCGTTCCATTACAAATATACTAGGTGAATTATA-CCTA-AC-A-ACAAA-T---TCCTATATAAATGAA-A---AA-----TATG-TAATACAAGTT
gi|41137 : TGGAATGTTGTACAC-ACCGT--AC---C-T-TTT-A--AA--T-C--------CTTAA-TTGA-TA-CAAAAATAAGAGCTTTTCAATACAAATGTATTATGCGAATTGTA-CCAA-AC-A-ACAAA-T---TCCTGTATAAATGCA-A---CA-----TATG-TAATACAAGTT
gi|41138 : TGGACAGTTGTAAAC-ACCGT--GCGGCC-T-TTC-A--GA--T-C--A-----CT--AATAAA-TA-CAAGATTACGCACTTTCCAATAAAAATGTATAATGAGAATTATA-CCTA-AC-A-ACAAA-T---TCCTATATAAATGCATATGCGA-----TATG-CAATACAAGT
gi|41139 : TGGAAAATTGTACAC-TCCGT--AC---C-T-TTT-A--TA--T-C--T-----TT--AACAGA-TATCAAGA-TACACGCCTTTTAATACAAATATATAATGCAAATTATA-ACTA-AT-A-ATGAA-G---TCCTGTATAAATGCA-A---CATATATTATG-TAATACAAGTT
gi|41140 : TGGAAAACTGCACAC-ACCGT--AC---C-T-TTT-T--GA--T-C--C-----CT--AATATG-TA-CAAAA-TACGCGC-TTTCAATGCACATAACTAATGCGAATTATA-CATA-AC-A-ACAAG-T---TCCTGTATAAATACA-A---CA-----TA
gi|41141 : TGGAAAAGTATACAT-AATCT--AC---CCT-TTC-AATGT--T-T--A---------A-TAAA-TA-CAAAATTAAGAGCATTCCAATACAAATACATAATGAGAATCTTA-CCTA-AT-A-ATGAA-T---TTCTGTATAAATGTT-A---TA-----TTTA-TAATACAAGTT
gi|41142 : TGGAAAATTGTGCAC-ACTTT--AC---C-A-ATC-A--AG--T-C--T-----TT--AATAAA-AA-CAAAATTAAGGGCGTTTCAATATAAATACTTGATGAGAATAATC-CCAA-AC-A-ACAAA-T---ATATATTTAAACGTA-A---TA-----TCAA-TAACACAAGTT
gi|41143 : TGGAAAATTAT-C-C-ATTGTCTAC---C-T-TTCGA--AA--G-T--A-----AC--A-TAGA-CA-AAAAACTAAGATCATTTCAATATAAATACATAATGAGAATTTTA-CCTA-CT-A-ACCAGTT---TTTTATATAAATGTA-A---AA-----TAGT-TAATTCAAGT
gi|41144 : TGGAAAATTATTCATTGTC-T--AC---C-T-TTC-A--AAA-G-C--A-----CT--C-TAGA-CA-CAAAACGAAGATCATTTCAATATAAATACATAATGAGACTTTTA-CCTA-TT-A-ACCAG-T---TTTTATCTAAATATA-A---AA-----TAAGTTAATTGAAGT
gi|41145 : GGAAAACTGTGCAT-AATGT--AT---A-TATTT-A------T-C--AAGGTTTA--A-TGAA-TA-CAAAATTAAGAGCAATTCAATATAAATACTTGCGGAGAATAATC-TCAA-AC-A-ACTAA-C---TTCTATTTAAATGTA-A---TA-----TTAA-TAACACAAGTT
gi|41146 : TATAT-ACTAT--AC---C-T-TTC-A--GA--T-CC-A-----CA--A-TCGACTC-CAAAA-TAAGAAATTTTCAGTACAAATATCTTATGAGAATAGTA-CC-A-ACAA-ACAAA-TCGCTTTTG---AAATGCA-A---
gi|41147 : C-ACAAT--AC---C-T-TTT-A--TA--T-CTGA------A--A-TAAA-TA-CAAAGATACGCGCCTTTCAATACAAATATTTAATGCGAATTATT-CCTA-AT-A-ACGAA-T---TTCTGTATAAATGAA-A---CA-----TATG-TAATACAAGTT
gi|41148 : C-ACTGTCTAC---C-T-TTC-AAAGG--T----A-----CA--A-TAGA-CA-CAAAACTAAGATCGTTTCAATACAAATACATTATGAGAATTTTA-CCTA-CT-A-ACACG-T---TTTTATCTAAATGTA-A---AA-----TAGT-TAATTCAAGT
gi|41149 : C-ACTGTCTAC---C-T-TTC-A--AAAGT----A-----CC--A-TTGA-AA-CAAAACTAAGATCATTTCAATACAAATACATAATGAGAATTTCA-CCTA-CT-A-ACAAG-T---TTTTATCTAAATGTA-A---AA-----TAGT-TAACTCAAGT
gi|41150 : T--AC---C-T-TTC-A--AAA-T-T--A-----CA--A-TAGA-CA-CAAAACTAAGATCATTTCAATACAAATACATTATGAGAATTTTA-CCTA-CT-A-ACCAG-T---TTTTATCTAAATGTA-A---AT-----TAGT-TAATTCAAGT
gi|41151 : T--AC---C-T-TTC-A--AAA-T-T--A-----CA--A-TAGA-CA-CAAAACTAAGATCATTTCAATACAAATACATTATGAGAATTTTA-CCTA-CT-G-ACCAA-T---TTTTATCTAAATGTA-A---AT-----TAGT-TAATTCAAGT
gi|41152 : T--GC---C-T-TTA-A--AT--T-C--AA----TA--A-TTAA-TC-CAAAACTACGCGAATTCCAATACAAGTTCATTATGCGTGTAATA-CCTA-CA-A-ACAAA-T---ATCTGTACAAATGCA-A---
gi|41153 : T--AG---C-T-TTT-A--AA--TGT--G-----TA--A-TAGA-CA-CAAAATTAAGATCATTTCAATACAAATACAGTATGAGAATTTTA-CGTA-TT-A-ACCAG-T---TTTTATCTAAATGTA-A----A-----TTTGTTAATTCAAGTacttgtacaatcaaat
gi|41154 : T--AC---C-T-TTC-A--AAAGT----A-----CA--A-TAGA-CA-CAAAACTAAGATCATTTCAATGCAAATACATTATGAGAATTTTA-CCTA-CT-T-ACCAG-T---TTTTATCTAAATGTA-A---AT-----TAGT-TAATAAAAG
gi|41155 : T--AC---C-T-TTT-A--AC--T-C--AA----CC--A-TTGA-TA-CAAAACCACGCGAATTCCAATACAAGTATAGTATGAGGATTGTA-CGGACAC-ACACACA-T---TTCTTTACAAATGCA-A---
gi|41156 : AATTGTA-CCTA-AC-A-ACAGA-A---TCCTGTATAAATGCA-A---CA-----TATG-TAATACAAGTT
blockSeqs : T CT GGC C A G TCAAGGTTTAA C T G C AG T T G T ACA C T CGC A T TGCG TATAT AGT
blockSeqs : . CT . . . . GATCACTAA . . T C CG T A A . CAC . . . A . C . TGT
blockSeqs : . CT . . . . GATCACTAA . . T C CG G T A . AC . . . A . C . TG
blockSeqs : . . . . . . GATCACTAA . . A A AG T T G . AT . . . A . A . TG
blockSeqs : . . . . . . AATCCTTAA . . T C CA T A A . AC . . . A . C . TG
blockSeqs : . . . . . . GATCACTAA . . T C CG C A A . AC . . . A . C . TG
blockSeqs : . . . . . . TATCTTTAA . . T C CG A A A . AC . . . A . C . TG
blockSeqs : . . . . . . GATCCCTAA . . C A AG G A T . AT . . . A . T . TG
blockSeqs : . . . . . . AGTCTTTAA . . C A GG A G A . AC . . . T . T . TA
blockSeqs : . . . . . . AAAGCACTC . . T A AT A A T . AT . . . A . A . AA
blockSeqs : . . . . . . GATCCACAA . . A A AT A A T . AC . . . C . A . GT
blockSeqs : . . . . . . TATCTGAAA . . C A AG T G A . CT . . . T . T . AA
blockSeqs : . . . . . . AAGGTACAA . . C A AA C T G . TT . . . A . C . TG
blockSeqs : . . . . . . AAAGTACCA . . C C CG G A A . AC . . . C . A . GT
blockSeqs : . . . . . . AAATTACAA . . C A AT A T T . AT . . . C . A . GT
blockSeqs : . . . . . . AAATTACAA . . C A AT A A T . CT . . . C . A . GT
blockSeqs : . . . . . ATTCAATAA . . T A AT A T T . CT . . . C . A . GT
blockSeqs : . . . . . AATGTGTAA . . C A AT A T T . CT . . . A . A . GT
blockSeqs : . . . . . AAAGTACAA . . C C CG A T A . CT . . . C . C . TG
blockSeqs : . . . . . ACTCAACCA . . . A AT A T T . CA . . . C . . .
blockSeqs : . . . . . ATGTTTAA . . . A AT A T T . TT . . . A .
blockSeqs : . . . . . AAGTAACA . . . C CG . T G . CT . . . A .
blockSeqs : G . AC . . . . .
blockSeqCons :
originalCons : TGGAAAGTTGTACAC-ACCGT--AC---C-T-TTC-A--GA--T-C--A-----CN--A-TAGA-TA-CAAAACTAAGAGCNTTTCAATACAAATACATNATGAGAATTNTA-CCTA-AC-A-ACAAA-T---TTCTGTATAAATGCA-A---NA-----TANG-TAATACAAGTT
finalCons : TGGAAAGTTGTACAC-ACCGT--AC---C-T-TTC-A--GA--T-C--A-----CN--A-TAGA-TA-CAAAACTAAGAGCNTTTCAATACAAATACATNATGAGAATTNTA-CCTA-AC-A-ACAAA-T---TTCTGTATAAATGCA-A---NA-----TANG-TAATACAAGTT
Alignments
lowQualScore : 22222222222222222222222
lowQualScore : 2 77 333 1 1 1 66666666666666666666666 1 1 5 1 11 2 1 0 1 1 2222 1 1 1 222 0 1 1 5555 44444 444 0
lowQualScore : . .. ... . . . ....................... . . . . .. . . . . . .... . . . ... . . . .... ..... ... .
lowQualScore : 4 22 000 7 7 7 88888888888888888888888 7 7 3 4 11 7 0 5 0 7 5555 7 0 7 999 1 2 7 8888 88888 999 1
consensus : TGGAAAGTTGTACAC-ACCGT--AC---C-T-TTC-A--GA--T-C--A-----CN--A-TAGA-TA-CAAAACTAAGAGCNTTTCAATACAAATACATNATGAGAATTNTA-CCTA-AC-A-ACAAA-T---TTCTGTATAAATGCA-A---NA-----TANG-TAATACAAGTT
Reference ( family-726 ) : TGGAAAGTTGTACAC-ACCGT--AC---C-T-TTC-A--GA--T-C--A-----CN--A-TAGA-TA-CAAAACTAAGAGCNTTTCAATACAAATACATNATGAGAATTNTA-CCTA-AC-A-ACAAA-T---TTCTGTATAAATGCA-A---NA-----TANG-TAATACAAGTT
gi|41133 : TGGAAAGTTGTACAC-ACCGT--AC---C-T-TTC-A--GG--T-C--A-----CAT-A-TAGA-TA-CAAAATTACGCGCTTTTCAATACAAATATATAATGCGAATTATA-CCTA-AC-A-ACCAA-A---TTCTGTATAAATGCA-A---CA-----TATG-TAATACAAGTT
gi|41134 : TGGAAAGTTGTACAC-ACTGT--AC---C-T-TTT-A--GA--T-C--A-----CT--AATAGA-TA-CAAAAGTACGAGCTTTTTAATACAAATATATTGTGCGAATTGTA-CCTA-AC-A-ACAAA-T---TCCTCTATAAATGCA-A---CA-----TATG-TAATACAAGTT
gi|41135 : TGGAAAGTTGTACAC-ATCGT--AC---C-T-ATC-A--GA--T-C--A-----CT--AATAGA-TA-CAAAATTACGCGCTTTTCAATATAAATATATAGTGCGAATTATATCTTA-AT-A-ACAAA-T---TTCTGTATAAATGCA-A---CA-----TATG-CAATACAATTT
gi|41136 : TGGAAAGTTGTACAC-ACCTT--AC---C-T-TTT-A--GA--T-C--A-----CT--AATAGA-TA-CAATCTTACGCGCGTTCCATTACAAATATACTAGGTGAATTATA-CCTA-AC-A-ACAAA-T---TCCTATATAAATGAA-A---AA-----TATG-TAATACAAGTT
gi|41137 : TGGAATGTTGTACAC-ACCGT--AC---C-T-TTT-A--AA--T-C--------CTTAA-TTGA-TA-CAAAAATAAGAGCTTTTCAATACAAATGTATTATGCGAATTGTA-CCAA-AC-A-ACAAA-T---TCCTGTATAAATGCA-A---CA-----TATG-TAATACAAGTT
gi|41138 : TGGACAGTTGTAAAC-ACCGT--GCGGCC-T-TTC-A--GA--T-C--A-----CT--AATAAA-TA-CAAGATTACGCACTTTCCAATAAAAATGTATAATGAGAATTATA-CCTA-AC-A-ACAAA-T---TCCTATATAAATGCATATGCGA-----TATG-CAATACAAGT
gi|41139 : TGGAAAATTGTACAC-TCCGT--AC---C-T-TTT-A--TA--T-C--T-----TT--AACAGA-TATCAAGA-TACACGCCTTTTAATACAAATATATAATGCAAATTATA-ACTA-AT-A-ATGAA-G---TCCTGTATAAATGCA-A---CATATATTATG-TAATACAAGTT
gi|41140 : TGGAAAACTGCACAC-ACCGT--AC---C-T-TTT-T--GA--T-C--C-----CT--AATATG-TA-CAAAA-TACGCGC-TTTCAATGCACATAACTAATGCGAATTATA-CATA-AC-A-ACAAG-T---TCCTGTATAAATACA-A---CA-----TA
gi|41141 : TGGAAAAGTATACAT-AATCT--AC---CCT-TTC-AATGT--T-T--A---------A-TAAA-TA-CAAAATTAAGAGCATTCCAATACAAATACATAATGAGAATCTTA-CCTA-AT-A-ATGAA-T---TTCTGTATAAATGTT-A---TA-----TTTA-TAATACAAGTT
gi|41142 : TGGAAAATTGTGCAC-ACTTT--AC---C-A-ATC-A--AG--T-C--T-----TT--AATAAA-AA-CAAAATTAAGGGCGTTTCAATATAAATACTTGATGAGAATAATC-CCAA-AC-A-ACAAA-T---ATATATTTAAACGTA-A---TA-----TCAA-TAACACAAGTT
gi|41143 : TGGAAAATTAT-C-C-ATTGTCTAC---C-T-TTCGA--AA--G-T--A-----AC--A-TAGA-CA-AAAAACTAAGATCATTTCAATATAAATACATAATGAGAATTTTA-CCTA-CT-A-ACCAGTT---TTTTATATAAATGTA-A---AA-----TAGT-TAATTCAAGT
gi|41144 : TGGAAAATTATTCATTGTC-T--AC---C-T-TTC-A--AAA-G-C--A-----CT--C-TAGA-CA-CAAAACGAAGATCATTTCAATATAAATACATAATGAGACTTTTA-CCTA-TT-A-ACCAG-T---TTTTATCTAAATATA-A---AA-----TAAGTTAATTGAAGT
gi|41145 : GGAAAACTGTGCAT-AATGT--AT---A-TATTT-A------T-C--AAGGTTTA--A-TGAA-TA-CAAAATTAAGAGCAATTCAATATAAATACTTGCGGAGAATAATC-TCAA-AC-A-ACTAA-C---TTCTATTTAAATGTA-A---TA-----TTAA-TAACACAAGTT
gi|41146 : TATAT-ACTAT--AC---C-T-TTC-A--GA--T-CC-A-----CA--A-TCGACTC-CAAAA-TAAGAAATTTTCAGTACAAATATCTTATGAGAATAGTA-CC-A-ACAA-ACAAA-TCGCTTTTG---AAATGCA-A---
gi|41147 : C-ACAAT--AC---C-T-TTT-A--TA--T-CTGA------A--A-TAAA-TA-CAAAGATACGCGCCTTTCAATACAAATATTTAATGCGAATTATT-CCTA-AT-A-ACGAA-T---TTCTGTATAAATGAA-A---CA-----TATG-TAATACAAGTT
gi|41148 : C-ACTGTCTAC---C-T-TTC-AAAGG--T----A-----CA--A-TAGA-CA-CAAAACTAAGATCGTTTCAATACAAATACATTATGAGAATTTTA-CCTA-CT-A-ACACG-T---TTTTATCTAAATGTA-A---AA-----TAGT-TAATTCAAGT
gi|41149 : C-ACTGTCTAC---C-T-TTC-A--AAAGT----A-----CC--A-TTGA-AA-CAAAACTAAGATCATTTCAATACAAATACATAATGAGAATTTCA-CCTA-CT-A-ACAAG-T---TTTTATCTAAATGTA-A---AA-----TAGT-TAACTCAAGT
gi|41150 : T--AC---C-T-TTC-A--AAA-T-T--A-----CA--A-TAGA-CA-CAAAACTAAGATCATTTCAATACAAATACATTATGAGAATTTTA-CCTA-CT-A-ACCAG-T---TTTTATCTAAATGTA-A---AT-----TAGT-TAATTCAAGT
gi|41151 : T--AC---C-T-TTC-A--AAA-T-T--A-----CA--A-TAGA-CA-CAAAACTAAGATCATTTCAATACAAATACATTATGAGAATTTTA-CCTA-CT-G-ACCAA-T---TTTTATCTAAATGTA-A---AT-----TAGT-TAATTCAAGT
gi|41152 : T--GC---C-T-TTA-A--AT--T-C--AA----TA--A-TTAA-TC-CAAAACTACGCGAATTCCAATACAAGTTCATTATGCGTGTAATA-CCTA-CA-A-ACAAA-T---ATCTGTACAAATGCA-A---
gi|41153 : T--AG---C-T-TTT-A--AA--TGT--G-----TA--A-TAGA-CA-CAAAATTAAGATCATTTCAATACAAATACAGTATGAGAATTTTA-CGTA-TT-A-ACCAG-T---TTTTATCTAAATGTA-A----A-----TTTGTTAATTCAAGTacttgtacaatcaaat
gi|41154 : T--AC---C-T-TTC-A--AAAGT----A-----CA--A-TAGA-CA-CAAAACTAAGATCATTTCAATGCAAATACATTATGAGAATTTTA-CCTA-CT-T-ACCAG-T---TTTTATCTAAATGTA-A---AT-----TAGT-TAATAAAAG
gi|41155 : T--AC---C-T-TTT-A--AC--T-C--AA----CC--A-TTGA-TA-CAAAACCACGCGAATTCCAATACAAGTATAGTATGAGGATTGTA-CGGACAC-ACACACA-T---TTCTTTACAAATGCA-A---
gi|41156 : AATTGTA-CCTA-AC-A-ACAGA-A---TCCTGTATAAATGCA-A---CA-----TATG-TAATACAAGTT