lowQualScore : 1 1111111
lowQualScore : 333 2 44 1 6 1 6 3 555 0000000
lowQualScore : ... . .. . . . . . ... .......
lowQualScore : 000 2 44 6 3 5 0 1 444 0000000
consensus : GCAGCTTT---TACGT--A-GCTAAAACGTACGTAAAAGCTNGCGGTATTG-GCA---C-------CTGCGTAAACGCAGCTTTTACGAAG
Reference ( gi|11599 ) : GCAGCTTT---TACAT--A-GCTAAAACATACGTAAAAGCTTGCAGTATTG-GCA---C-------CTGCGTAAACGCAGCTTTTACGAAG
gi|11606 : GCAGCTTT---TACGT--A-GCTAAAACATACGTGAAAGCTTGCAGTATTG-GCA---C-------CGGCGTAAACGCAGCTTTTACGAAG
gi|11605 : GCACCTTT---TACGT--A-GCTAAAACGTACGTAAAAGCTTGCGGTATTG-GCA---C-------CTGCGTAAACGCAGCTTTTGCGCAG
gi|11600 : GCACCTTT---TACGT--A-GCTAAAACGTACGTAAAAGCTTGCGGTATTG-GCA---C-------CTGCGTAAACGCAGCTTTTGCGCAG
gi|11601 : GCAGCTTT---TACAT--A-GCTAAAACATACATAATAGCTAGCGGTATTG-GCA---C-------CTGCGTAAACGCAGCTTTTACG
gi|11610 : GCAGCTTT---TATGT--A-GCTAAAACGTACGTAAAAGCTTGCGGTATTG-GCA---C-------CTGCGTAAACGCAGCTTTTGC
gi|11612 : GCAGCTTT---TACAT--A-GCTAAAATGTATGTAATAGCTAGCAGTATTG-GCA---C-------CTGCATAAACGCAGCTTTTACGAAG
gi|11607 : GCAGCTTT---TACAT--A-GCTAAAACGTACATAATAACTAGCGGTATTG-GCA---C-------CTGCGTAAACGCAGCTTTTACGGA
gi|11611 : GCAGCTTT---TACGT--A-GTTAAAACGTATGTAAAAGCTTGCGGTATTG-GCA---T-------CTACGTAAACGCAGCTTTTGCGCAG
gi|11613 : GTAGCTTT---TACAT--A-GCTAAAACGTAAATAATAGCTAGCGGTATTG-GCA---C-------CTGCGTAAACGCAGCTTTTACAAAG
gi|11602 : GCAGCTTT---TACTC--A-GCTAAAACGTACGTAAAAGCTGGTGGTATTG-GCA---C-------CTGCGTAAACGCAGCTTTT
gi|11608 : GCAGCTTT---TACTC--A-GCTAAAACATACATAAAAGCTAGTGGTATTG-GCA---C-------CTGCGTAAACGCAGCTTTT
gi|11609 : GCAGCTTT---TACGA--A-G----GACCTTCATAAAAGC-TGC-GTAT-----A---CGAAGGGGCTGCGTAAACGCAGCTTTTAC
gi|11603 : GCAGCTTT---TACGA--A-G----GACCTTCATAAAAGC-TGCA-TAT-----A---CGAAGGGGCTGCGTAAACGCAGCTTTTAC
gi|11604 : GCAGCTTT---TACGT--A---TGA--CCTTTGTAAAAGCT-GC-GTAATA-GC-------------TGCGTATATGCACCTTTTACGTAG
gi|11604 : GCAGCTTT---TACAA--A-GGT----CATACGTAAAAGCT
gi|11611 : gcAGCTTT---TACAT--ACGTTTTAAC-TACGTAAAAGCTgtaatagctgcgtatatgcaccttttacgtag
gi|11616 : gcAGCTTCGTATACAC--A-GCTAAAACGTACGTAAAAGCTAGCAGTATTG-GCA---A-------CTACGTGAAAGCAGCTTTTtgcggtattggcatctacgtaaacgcagcttttgcgcag
gi|11617 : TTA---TACTC--A-GCTAAAACGTGCTTAAAAGCTAGCGCTATTG-GCA---C-------CTGCGTAAATGCAGCTTTTGC
gi|11615 : TT---TATATGCA-GCTAAAATTTATGTTGAAGCTAGCAGTATTG-GCA---C-------CTGCGTAAACACAGTTTTT
gi|11614 : agTT---TATATGCA-GCTAAAATTTATGTTGAAGCTAGCAGTATTG-GCA---C-------CTGCGTAAACACAGTTTTT
gi|11619 : ag---TACGT--A-GCTAAAACATACGTAAAAGCTAGCAGTATTG-GTA---C-------CATCATAAACGCAGCTTTTACGAAG
gi|11620 : ---TACTT--A-GCTAAAATGTAAATAAAAGCTAGCGGTATTG-GCA---C-------CTGCATAAACGCAGTTTTTACGAA
gi|11618 : ---TACGC--A-GCTAAATTGTATGTTGAAGCTAGCAGTATTA-GCA---C-------CTGCTTAAACACAGTTTTTGC
gi|11621 : ACGT--A-GCTAAAACGTACGTAAAAGCTTGCGGTATTG-GCA---C-------CTGCGTATACGCAGCTTTTCCGAAG
gi|11622 : T--A-GCTAAAACGTACGTAAAAGCTTGCGGTATTG-GCA---C-------CTGCGTATACGCAGCTTTTACGAAG
gi|11604 : gTACGTAAAAGGT-GCA-TATAC-GCA---G-------CTAT-TA--CGCAGCTTTTACAAAG
gi|11609 : gcagcttttacgtatgacGTAAAAGCT-GC-GT-TTACGCAGCCC-------CTTCGTATACGCAGCTTTTATGAAGg
gi|11603 : gcagcttttacgaaggacGTAAAAGCT-GC-GT-TTACGCAGCCC-------CTTCGTATATGCAGCTTTTATGAAG
Alignments
lowQualScore : 1111111
lowQualScore : 333 5 0000000
lowQualScore : ... . .......
lowQualScore : 222 9 8888888
consensus : GCAGCTTT---TACGTAGCTAAAACGTACGTAAAAGCTAGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACGAAG
Reference ( family-722 ) : GCAGCTTT---TACGTAGCTAAAACGTACGTAAAAGCTNGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACGAAG
gi|11599 : GCAGCTTT---TACATAGCTAAAACATACGTAAAAGCTTGCAGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACGAAG
gi|11600 : GCACCTTT---TACGTAGCTAAAACGTACGTAAAAGCTTGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTGCGCAG
gi|11601 : GCAGCTTT---TACATAGCTAAAACATACATAATAGCTAGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACG
gi|11602 : GCAGCTTT---TACTCAGCTAAAACGTACGTAAAAGCTGGTGGTATTGGCAC-------CTGCGTAAACGCAGCTTTT
gi|11603 : GCAGCTTT---TACGAAG----GACCTTCATAAAAGCT-GCA-TAT----ACGAAGGGGCTGCGTAAACGCAGCTTTTAC
gi|11604 : GCAGCTTT---TACGTA--TGA--CCTTTGTAAAAGCT-GCG-TAATAGC----------TGCGTATATGCACCTTTTACGTAG
gi|11605 : GCACCTTT---TACGTAGCTAAAACGTACGTAAAAGCTTGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTGCGCAG
gi|11606 : GCAGCTTT---TACGTAGCTAAAACATACGTGAAAGCTTGCAGTATTGGCAC-------CGGCGTAAACGCAGCTTTTACGAAG
gi|11607 : GCAGCTTT---TACATAGCTAAAACGTACATAATAACTAGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACGGA
gi|11608 : GCAGCTTT---TACTCAGCTAAAACATACATAAAAGCTAGTGGTATTGGCAC-------CTGCGTAAACGCAGCTTTT
gi|11609 : GCAGCTTT---TACGAAG----GACCTTCATAAAAGCT-GC-GTAT----ACGAAGGGGCTGCGTAAACGCAGCTTTTAC
gi|11610 : GCAGCTTT---TATGTAGCTAAAACGTACGTAAAAGCTTGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTGC
gi|11611 : GCAGCTTT---TACGTAGTTAAAACGTATGTAAAAGCTTGCGGTATTGGCAT-------CTACGTAAACGCAGCTTTTGCGCAG
gi|11612 : GCAGCTTT---TACATAGCTAAAATGTATGTAATAGCTAGCAGTATTGGCAC-------CTGCATAAACGCAGCTTTTACGAAG
gi|11613 : GTAGCTTT---TACATAGCTAAAACGTAAATAATAGCTAGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACAAAG
gi|11614 : AGTTTA---TATGCAGCTAAAATTTATGTTGAAGCTAGCAGTATTGGCAC-------CTGCGTAAACACAGTTTTT
gi|11615 : AGTTTA---TATGCAGCTAAAATTTATGTTGAAGCTAGCAGTATTGGCAC-------CTGCGTAAACACAGTTTTT
gi|11616 : AGCTTCGTATACACAGCTAAAACGTACGTAAAAGCTAGCAGTATTGGCAA-------CTACGTGAAAGCAGCTTTT
gi|11617 : TTA---TACTCAGCTAAAACGTGCTTAAAAGCTAGCGCTATTGGCAC-------CTGCGTAAATGCAGCTTTTGC
gi|11618 : ---TACGCAGCTAAATTGTATGTTGAAGCTAGCAGTATTAGCAC-------CTGCTTAAACACAGTTTTTGC
gi|11619 : ---TACGTAGCTAAAACATACGTAAAAGCTAGCAGTATTGGTAC-------CATCATAAACGCAGCTTTTACGAAG
gi|11620 : ---TACTTAGCTAAAATGTAAATAAAAGCTAGCGGTATTGGCAC-------CTGCATAAACGCAGTTTTTACGAA
gi|11621 : ACGTAGCTAAAACGTACGTAAAAGCTTGCGGTATTGGCAC-------CTGCGTATACGCAGCTTTTCCGAAG
gi|11622 : GTAGCTAAAACGTACGTAAAAGCTTGCGGTATTGGCAC-------CTGCGTATACGCAGCTTTTACGAAG
Alignments
lowQualScore : 1111111
lowQualScore : 333 6 0000000
lowQualScore : ... . .......
lowQualScore : 222 4 8888888
consensus : GCAGCTTT---TACGTAGCTAAAACGTACGTAAAAGCTAGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACGAAG
Reference ( family-722 ) : GCAGCTTT---TACGTAGCTAAAACGTACGTAAAAGCTAGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACGAAG
gi|11599 : GCAGCTTT---TACATAGCTAAAACATACGTAAAAGCTTGCAGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACGAAG
gi|11600 : GCACCTTT---TACGTAGCTAAAACGTACGTAAAAGCTTGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTGCGCAG
gi|11601 : GCAGCTTT---TACATAGCTAAAACATACATAATAGCTAGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACG
gi|11602 : GCAGCTTT---TACTCAGCTAAAACGTACGTAAAAGCTGGTGGTATTGGCAC-------CTGCGTAAACGCAGCTTTT
gi|11603 : GCAGCTTT---TACGAAG----GACCTTCATAAAAGCT-GCA-TAT----ACGAAGGGGCTGCGTAAACGCAGCTTTTAC
gi|11604 : GCAGCTTT---TACGTA--TGA--CCTTTGTAAAAGCT-GCG-TAATAGC----------TGCGTATATGCACCTTTTACGTAG
gi|11605 : GCACCTTT---TACGTAGCTAAAACGTACGTAAAAGCTTGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTGCGCAG
gi|11606 : GCAGCTTT---TACGTAGCTAAAACATACGTGAAAGCTTGCAGTATTGGCAC-------CGGCGTAAACGCAGCTTTTACGAAG
gi|11607 : GCAGCTTT---TACATAGCTAAAACGTACATAATAACTAGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACGGA
gi|11608 : GCAGCTTT---TACTCAGCTAAAACATACATAAAAGCTAGTGGTATTGGCAC-------CTGCGTAAACGCAGCTTTT
gi|11609 : GCAGCTTT---TACGAAG----GACCTTCATAAAAGCT-GC-GTAT----ACGAAGGGGCTGCGTAAACGCAGCTTTTAC
gi|11610 : GCAGCTTT---TATGTAGCTAAAACGTACGTAAAAGCTTGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTGC
gi|11611 : GCAGCTTT---TACGTAGTTAAAACGTATGTAAAAGCTTGCGGTATTGGCAT-------CTACGTAAACGCAGCTTTTGCGCAG
gi|11612 : GCAGCTTT---TACATAGCTAAAATGTATGTAATAGCTAGCAGTATTGGCAC-------CTGCATAAACGCAGCTTTTACGAAG
gi|11613 : GTAGCTTT---TACATAGCTAAAACGTAAATAATAGCTAGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACAAAG
gi|11614 : AGTTTA---TATGCAGCTAAAATTTATGTTGAAGCTAGCAGTATTGGCAC-------CTGCGTAAACACAGTTTTT
gi|11615 : AGTTTA---TATGCAGCTAAAATTTATGTTGAAGCTAGCAGTATTGGCAC-------CTGCGTAAACACAGTTTTT
gi|11616 : AGCTTCGTATACACAGCTAAAACGTACGTAAAAGCTAGCAGTATTGGCAA-------CTACGTGAAAGCAGCTTTT
gi|11617 : TTA---TACTCAGCTAAAACGTGCTTAAAAGCTAGCGCTATTGGCAC-------CTGCGTAAATGCAGCTTTTGC
gi|11618 : ---TACGCAGCTAAATTGTATGTTGAAGCTAGCAGTATTAGCAC-------CTGCTTAAACACAGTTTTTGC
gi|11619 : ---TACGTAGCTAAAACATACGTAAAAGCTAGCAGTATTGGTAC-------CATCATAAACGCAGCTTTTACGAAG
gi|11620 : ---TACTTAGCTAAAATGTAAATAAAAGCTAGCGGTATTGGCAC-------CTGCATAAACGCAGTTTTTACGAA
gi|11621 : ACGTAGCTAAAACGTACGTAAAAGCTTGCGGTATTGGCAC-------CTGCGTATACGCAGCTTTTCCGAAG
gi|11622 : GTAGCTAAAACGTACGTAAAAGCTTGCGGTATTGGCAC-------CTGCGTATACGCAGCTTTTACGAAG
blockSeqs : GTA T GAAGGGG
blockSeqs : . A GAAGGGG
blockSeqs : . G .
blockSeqs : . T .
blockSeqs : . T .
blockSeqs : . A .
blockSeqs : . A .
blockSeqs : . T .
blockSeqs : . T .
blockSeqs : . A .
blockSeqs : . A .
blockSeqs : . A .
blockSeqs : . A .
blockSeqs : . A .
blockSeqs : . A .
blockSeqs : . A .
blockSeqs : . A .
blockSeqs : . A .
blockSeqs : . T .
blockSeqs : . T .
blockSeqs : . . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons :
originalCons : GCAGCTTT---TACGTAGCTAAAACGTACGTAAAAGCTAGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACGAAG
finalCons : GCAGCTTT---TACGTAGCTAAAACGTACGTAAAAGCTAGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACGAAG
Alignments
lowQualScore : 1111111
lowQualScore : 333 6 0000000
lowQualScore : ... . .......
lowQualScore : 222 4 8888888
consensus : GCAGCTTT---TACGTAGCTAAAACGTACGTAAAAGCTAGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACGAAG
Reference ( family-722 ) : GCAGCTTT---TACGTAGCTAAAACGTACGTAAAAGCTAGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACGAAG
gi|11599 : GCAGCTTT---TACATAGCTAAAACATACGTAAAAGCTTGCAGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACGAAG
gi|11600 : GCACCTTT---TACGTAGCTAAAACGTACGTAAAAGCTTGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTGCGCAG
gi|11601 : GCAGCTTT---TACATAGCTAAAACATACATAATAGCTAGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACG
gi|11602 : GCAGCTTT---TACTCAGCTAAAACGTACGTAAAAGCTGGTGGTATTGGCAC-------CTGCGTAAACGCAGCTTTT
gi|11603 : GCAGCTTT---TACGAAG----GACCTTCATAAAAGCT-GCA-TAT----ACGAAGGGGCTGCGTAAACGCAGCTTTTAC
gi|11604 : GCAGCTTT---TACGTA--TGA--CCTTTGTAAAAGCT-GCG-TAATAGC----------TGCGTATATGCACCTTTTACGTAG
gi|11605 : GCACCTTT---TACGTAGCTAAAACGTACGTAAAAGCTTGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTGCGCAG
gi|11606 : GCAGCTTT---TACGTAGCTAAAACATACGTGAAAGCTTGCAGTATTGGCAC-------CGGCGTAAACGCAGCTTTTACGAAG
gi|11607 : GCAGCTTT---TACATAGCTAAAACGTACATAATAACTAGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACGGA
gi|11608 : GCAGCTTT---TACTCAGCTAAAACATACATAAAAGCTAGTGGTATTGGCAC-------CTGCGTAAACGCAGCTTTT
gi|11609 : GCAGCTTT---TACGAAG----GACCTTCATAAAAGCT-GC-GTAT----ACGAAGGGGCTGCGTAAACGCAGCTTTTAC
gi|11610 : GCAGCTTT---TATGTAGCTAAAACGTACGTAAAAGCTTGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTGC
gi|11611 : GCAGCTTT---TACGTAGTTAAAACGTATGTAAAAGCTTGCGGTATTGGCAT-------CTACGTAAACGCAGCTTTTGCGCAG
gi|11612 : GCAGCTTT---TACATAGCTAAAATGTATGTAATAGCTAGCAGTATTGGCAC-------CTGCATAAACGCAGCTTTTACGAAG
gi|11613 : GTAGCTTT---TACATAGCTAAAACGTAAATAATAGCTAGCGGTATTGGCAC-------CTGCGTAAACGCAGCTTTTACAAAG
gi|11614 : AGTTTA---TATGCAGCTAAAATTTATGTTGAAGCTAGCAGTATTGGCAC-------CTGCGTAAACACAGTTTTT
gi|11615 : AGTTTA---TATGCAGCTAAAATTTATGTTGAAGCTAGCAGTATTGGCAC-------CTGCGTAAACACAGTTTTT
gi|11616 : AGCTTCGTATACACAGCTAAAACGTACGTAAAAGCTAGCAGTATTGGCAA-------CTACGTGAAAGCAGCTTTT
gi|11617 : TTA---TACTCAGCTAAAACGTGCTTAAAAGCTAGCGCTATTGGCAC-------CTGCGTAAATGCAGCTTTTGC
gi|11618 : ---TACGCAGCTAAATTGTATGTTGAAGCTAGCAGTATTAGCAC-------CTGCTTAAACACAGTTTTTGC
gi|11619 : ---TACGTAGCTAAAACATACGTAAAAGCTAGCAGTATTGGTAC-------CATCATAAACGCAGCTTTTACGAAG
gi|11620 : ---TACTTAGCTAAAATGTAAATAAAAGCTAGCGGTATTGGCAC-------CTGCATAAACGCAGTTTTTACGAA
gi|11621 : ACGTAGCTAAAACGTACGTAAAAGCTTGCGGTATTGGCAC-------CTGCGTATACGCAGCTTTTCCGAAG
gi|11622 : GTAGCTAAAACGTACGTAAAAGCTTGCGGTATTGGCAC-------CTGCGTATACGCAGCTTTTACGAAG