lowQualScore : 11111 11111111 3333 1 1111111111111 1 44444
lowQualScore : 6 5555 77777 2 3 2 2 33 2 3 2 22222222 2 2 8 0 9 33 0 55 2 9999 5555 22 3333 2 5 7777 7 66666 2 5 4 2 3 2 5555555555555 2 6 6 6 7 77777
lowQualScore : . .... ..... . . . . .. . . . ........ . . . . . .. . .. . .... .... .. .... . . .... . ..... . . . . . . ............. . . . . . .....
lowQualScore : 0 0000 22222 2 6 9 4 44 5 6 4 66666666 4 4 2 8 4 11 7 66 4 7777 3333 99 6666 5 0 8888 3 77777 7 1 0 7 9 7 7777777777777 9 6 4 2 7 99999
consensus : TTTTTCTTAATGCATACTCCCA----AGATGTAACT----AA-GTATATTGTCTTCCATCGGTAGTTCATTCC-TACCTTGCAGCTA--TCA-CCACAAAAGACGCAA-TTCGAGAAAA------CCG-AGAGTGTTTACATGTGCCGA-AATCCATGTTCACTAA--ATGGCACCTTCTTTTG--GAC-TTTTTC----T----ATGATAT-CAC-G-C-TGTGTTTTCATGAAT-TTT----ACTGTCAGTACTGTTTTCACCACCAANTATT-----TCCAAATTACA-CTTGATTCGTCCGTTTAAGACC-TCCNT-GTTT-------------TGAAAT-TCATATGTGTACGACAATATATGAGGGNTTTCGTCAACTGTATGCCATAAATGAATGGATGCGTT-G--GCCCAGTAGGGAAAATACAA
Reference ( gi|98461 ) : TTTTTCTTAATGCGTACTCCCA----AGATGTAACT----TA-GTATATTGTCTTCCATCAGTAGTTCACTCC-TACCTTGCAGCTA--TCA-CCATAAAAGACGCAA-TTCGAGAAAA------CTG-AGAGTGTTTACATGTGCCGA-AATACATGTTCATTAA--ATGACACCTTCTTTTG--GAC-TTTTTC----T----ATGATAT-TA--G-C-TGTGTTTTCATGAAT-TTT----ACTGTCAGTACTGTTTTCACCACCAATTATT-----TCCAAATTACA-CTTGATTAGCCCGTTTAAGACC-TCCAT-GTTT-------------TGAAAT-TCATATGTGTACAACAATAAATGAGGGATTTCGTCAACTGTATGCCATAAATGAATGGATACGTTTGATGCCCAGTAGGGAAAATACAA
gi|98460 : TTTTTCTTAATGCATACTCCCA----AGATGTAACT----AA-GTTTATTGGCTTCCATCAGTAGTTCATTAC-TACCTTGCAGCTA--TCA-CCATAAAAGACGCAA-TTCAAGAAAA------CCG-AGAGTGTTTACATGTGCCGA-AATACATGTTCACTAA--------TCTTCTTTTG--GAC-ATTTTC----T----ATGATAT-CA--CTC-TGTGTTTTCTTGAAT-TTT----ACTGTCAGTACTGTTTTTACCACCAAGTTTC-----TCCAAATTACA-CTTGATTCGCCCGTTTAAGACC-TCCAT-GTTT-------------TGAAAT-TCATATGTGTACGATAATATATGTTGGATTTCGTCAACTGTATGCCATAAATGAATGGATGCGTTCGATGCCCAGTAGGGAAAATA
gi|98466 : TTTTTCTTAATGCATACTCCCA----AGATGTAACT----AA-GTATATTGTCTTGCATCGGTAGTTCATTCC-TACCTTGCAGCTA--TCA-CCATAAAAGACGCAA-TTCGAGAAAA------CC---GATTGTTTACATGTGCCGA-AATACATGTTCACTAA--ATGACACC---------------TTTTC----T----ATGATAT-CAC-G-C-TGTGTTTTCATGAAT-TTT----ACTGTCAGTACTGTTTTCACCACCAATTATT-----TCCAAATTACA-CTTGATTTGCCCGTTTAAGACC-TCCAT-GTTT-------------TGAAAT-TCAT-----------AAT--ATGAGGGATTTCGTCAACTGTATGCCATAAATGAATGGATGCGTTTGATGCCCAGTGGGGATAATACAA
gi|98458 : TTTTTCTTAATGCATACTTCCA----AGATGTAACT----AA-GTATATTGTCTTCCATCGGTAATTCATTCC-TACCTTGCAGCTA--TCA-CCACAAAAGACGCAA-TTCGAGAAAA------CCA-AGAGTGTTTACATGTACCGA-AATCCATATTCACTAA--ATGGCACATTCTTTTG--GAT-TTTTTC----T----ATGATAT-CAT-G-C-TGTGTTTTCATGAAT-TTT----ACTGTCAGTACTGTTTTCACCATCAAATATT-----TCCAAATTACA-CTTTATTCGTCCGTTAAAGACC-TGCTC-GTTT-------------TGAAAT-TCATATGTGTACGCCAATATATGAGGGTTTTCGTCAACTGTATGCCATAAATGAATGG---CGTT-----CCCAGTAGGGAAAATACAA
gi|98465 : TTTTTTTTCATGCATATTCCCA----AGATGTAACT----AA-CTATATTGTCTTCCACCGGTAGTTCACTCC-TACCTTGCAGCTA--TCA-CCATAAAAGACGCAA-TTCGAGAAAA------CCG-AGAGTGTTAACATGTGACGA-AATACATGTTCACTAA--ATGACACCTTCTTTTG--GAT-TTTTTC----T----ATGATAT-CAC-G-C-TGTGTTTTCATGAAT-TTT----ACTGTCAGTACTGTTTTCACCACCAATTATT-----TCCAAATTACA-CTTGATTCGCCATTTTAAGACC-TCCAT-GTTT-------------TGAAAT-TCATATGTGTACGACAGTATATTAGGGATTTCGTCAACTGTAGGTCATAAATGAATGG
gi|98459 : TTTGTCCTAATGCATACTTTCA----AGATGTAACTATTGTAAGTATATTGTCTTCCATCGGTAGTTCATTCC-TACCTTGCAGCTA--TCA-CCACAAAAGACGCAA-TTCGGGAAAA------CCG-AGAGTGTTTACATGTACCGA-AATCTATATTCACTAA--ATGGCACCTTCTTTTA--GAC-CTTTTC----T----ATGATAT-CAC-G-C-TGTGTTTTCTTGAAT-TTT----ACTGTCAGTACTGTTTTCACCACCAAGTATT-----TCCAAATAACA-CTTGATTCGTCCGTTTAAGACA-TCCTT-GCTT-------------TGAAAT-TCTTATGTGTACGACAATACATGAGGGTTTTCGTCAACTGTATGCCATAAATGAATGGATGCGTT-----CCCAGTAGGGAAAATACAA
gi|98463 : TTTTTCTTAATGCATGTAACTA----AGATGTAACT----AA-GTATATTGTCTTCCATCGGTAATTCATTCC-TACCATGCAGCTA--TCA-CCACAAAAGACGCAA-TTCGAGAAAA------CCG-AGAGTGCTTACTTGTACTGA-AATCCTTATTCACTAA--ATGGCACCTTCTTTTGTTG-T-TTTTTC----T----ATGATAT-CAC-G-C-TGTGTTTTCATGAAT-TTT----ACTGTCAGTACTGTTTTCACCACCTAGTATT-----TCCAAATTACA-CTTGATTGGTCCGTTTAAGACC-TC----GTTT-------------TGAAAT-TCATATGTGTACGACAATATATGAGGGTTTTCGTAAACTGTATGCCATAAATGAATGGATGCGTT-----CCCAGTAGGGACAATACAA
gi|98464 : TTTTTCTTAATGCATACTTTCA----AGATGTAACT----TA-GTATATTGTCTTCCATCAGTAGTGCATTCA-TACCATGCAGCTA--TCA-CAACAAAAGACGCAA-TTCGAGAAAC------C----GAGTGTTTACTTGTACCGA-AATCCATATTCACCAA--ATGGCACCTTCTTT--------TTTTTCGTTGT----ATGATATCTC--A-C-TGTGTTTTCATGAAT-TTT----ACTGTCAGTACTGTTTTCACCACCGAGTATT-----TCTAAATTACA-TTTGATCCGTCCATTTAAGACC-T---T-GTTT-------------TGAAAT-TCATATGTGTACGACAATATATGAGGGTTTTCGTCAACTGTATGCCATAAATGAATGGATGCGTT-----CCCAGTAGGGAAAATACAA
gi|98462 : TTTTTCTTAATGCATACTTCCA----AGATGTAACT----AA-GTATATTGTCTTCCA-CGGTAATTCATTCC-TACCATGCAGCTA--TCA-CCACAAGAGACGCAA-TTCGAGAAAA------CCG-AGAGTGTTTACTTGTACTGA-AATCCATATTCACTAA--ATGGCACCTTCTTTTGT-GTT-TTTTTC----T----ATGATAT-CAC-G-C-TGTGCTTTCATGAAT-T-------------ATACTGTTTTCATCACCAAGTATT-----TCCAAATTACA-CTTGATTCGTCTGTTTAAGACC-TCCTC-GTTTTGAAATTCATATGTGAAAT-TCATATGTGTACGACAATATATGAGGGTTTTCGTCAACTGTATGCCATAAAAGAATGGATGTGTT-----CCCAGAAGGGAAAATA
gi|98467 : TTTTTCTTAATGCATATTCCCA----AGATGTTACT----AA-GTTTATTGTCTTCCATCGGTAGTTCAATCG-TACTTTACAGCTA--TCA-CCACAAAAGACGCAA-TTCGAGAAAA------A-G-ATAGTGTTTGCATGTACCGA-AATCCATATTCACTAA--ATGGCACCTTCTTTTG--AAC-CTTTTCA---T----A-GATTT-TA------CGTGCTTTCATGA-------------------ACTGTTTCCACCACCAAGTATT-----TCCAAATTACA-CTTGATTCGTCCGTTTAAGACC-TCCTT-GTTT-------------TGAAAT-TCATATGTGTACGACATTATATGAGGGTTTTCGGCAACTGTATGCCATGAATGAATGGATGCGTT-----CCAAATAGGGAAAATACAA
gi|98468 : TTTTTCTTAATACATACTCCCA----AGATATAACT----AA-GTTTATTATCTTCAATCGGTAGTTCATTCC-TACTTTGCTGCTA--TCA-CCACAAAAGACGCAA-TTCGAGAAAA------CCGAAGGGT-TTTACATGTAC--ATAATACATCTTCACTAA--ATGGCACCTTCTTTTG--GAC-TTTTTC----T----ATGATAT-TAT-A-C-TGTGTTTTCATGAAT-TTTG---ATTGTCAGCACTGTTTTTATCACCAA-TATT-------CAAATTACA-CTTGATTTGTCCGTTTA
gi|98469 : TTTATTTTTATGCATAC-CTCACCTTAGATGTAACT----GA-ACAAAT---CTT---------G--CACTTC-TCCCGTGCAGCAA--TCGTCCAAAAAATATGCAA-TTCGAAAAAAAAAAAAC-G-AGACTGTTAACGTGTGATGA-AATCCATATTCA--AA--TTGGCACCTTTGTTAG--CAC-TTCATC----T----ATTTTAT-TATAG-CGTGTGTCAGCCTGTTT-TTTTTATACTGTTGGTACTGTTTTCACCACCGATTATT-----TTGAAATTACA-TCT-ATCTCTCCGTTTAAGACC-T-CATCGTTT-------------CTAAAT-ACATATATGCATGCTAATCCATGA
gi|98471 : TTTTTGTTAATGCATACTCCCA----AGATGTAACT----AA-GTATATTGTCTTCAATCTGTAGT---CCCC-CACC
gi|98470 : TTTTTTTTAATGCATACTTCCA----ATATGTAACT----AA-GTATATTGTCTTCCGTCGGTA
gi|98472 : TTTTTTTAAAACATATTCCCA----AGATGTAACT----AA-GTATATTGTCTTCCATCAGTAGTTAATTCC-TACCTTGCATCTA--TCA-CCACAAAAGACGCAA-TTTGAGAAAA------CCG-AGAGTGTTTACATGTACCGA-AATCCATATTCACTAA--AAGGCACCTTCTTTTG--GAC-TATTTC----
gi|98473 : TCTTAATGAACACGAGCA----AGATG-AA-------------ATTGTCTTCAATCAATAGTT---TCTATATTTTGCAGTTAGTTCA-CCAGGAAAGATGCAA-TTGAAGGTAA------CCA-ACATTGTTGACATGTGCTGA-CATTTATTGTCATAAG--TTGACACCTATGTTGG--GATATTTTTCA---TGGTAATAATGT-TAC-A-C-TGTGTTTTTCTGAATATTT----ACTATTGGAAATGTTTTAGCCTCCAATTATTTTTTATCCAAA-------CTGATTTATCTTTTTAAAGTCATCTAT-ATTactgtcgtgtgtgatttaatttctgt
gi|98474 : TTAATGCATACCCCCA----AGATGTAACT----TA-GTATATTGTCTTCCATCGGTAGTTAACTCC-TACCTTGTAGCTA--TCA-CTATAAAAGACACAA-TTCGAGAAAA------CGG-AGATTGTTTACATGTGCCGA-AATACATGTTCACTAA--ATGACACCTTCTTTTG--GAC-TTTTTC----T----ATGATAT-CAC-G-C-TGTGTTTTCATGAAT-TTT----ACTGTCAATACTGTTTTCACCACCAATTATT-----TCCATATTACA-CTTGATACGCCCGTTTAAGATC-TCCAT-GTTT-------------TGAAAT-TCATATGTGTACGACAGTATATGAGGGATTCCGTCAACTGTATGCCATAAATGAATGGATGCGTTTGATGCTAAGAAGGGAAAATACAA
gi|98475 : TACTCCCA----AGATGTAACT----AA-GTATATTGTCTTCAATCTGTAGTTC---CC-CACC
gi|98476 : A-GTATATTGCATTCTATCAGTAGTTCACTCC-TACCTCGCAGCTA--TCA-CCACAAAAGACGCAA-TTCGAGAAAA------CCG-AGAGAGTTTACATGTGCCGA-AATACATGTTCACTAA--ATGGCACCTTCTTTTG--GAC-TTTTTC----T----ATGATAT-CAC-G-C-GTTGTTTTCATGAAT-CTT----ACTGTCAGTACTGTTTTCACCACCAAATATT-----TCCAAATTACG-CTCGATTCG-CTGTTTAAGACC-TCCAT-GTTT-------------TGAAAT-TCATATGTGTACGACAATATATGAGGGATTTCGTCAACTGTATGCCATAAATGAATGGATGCGTTTGATGCCCAGTAGGGAAAAT
gi|98477 : aTGCAGCTA--TCA-CTGCAAAATGTGTAAATTAGAGAAAA------TCG-ACGTTGTTTACATGTGCAGA-AGTTTGTAATCA--AACTATGACACATTTTTTT
gi|98478 : ACAAACAACGCAA-TTCGAAGAAA------TCA-TCAACGTTTACATGTGCTGA-AAT---TG-----------GGACA------TTTG-------TTTTC----T----ATGAGAT-TAC-G-C-TATGTaaat
gi|98479 : CATGTTCACTAA--ATGACACATTCTTTTG--GAC-TTTTTC----T----ATGATAT-CAC-G-C-TGAGTTTTCATGAAT-TTT----ACTGTCAGTACCG
gi|98480 : GTGATTTGCTGAATATTT----ACTGTCTGTAATGTTT-AACCACCCATTATT-----TC--AATTAAAACCTGGTTTGTCCGTTTCAACCC-CTCGT-GTT----------------AAATGTAACATATGGACGACAACTCGTGATACTCTTCGTCAACTGTATCCCGGTAATAAATGGATTCGTT
gi|98481 : GTTTAAGACC-TCCTC-GTTT-------------TGAAAT-TCATATGTGTACGACAATATATGAGGGGTTTTGTCAACTGTATGCCATAAATGAATGGATGCGTT-----CCCAGTAGAGAAAATACAAccaacta
Alignments
lowQualScore : 1111111111111 1 44444
lowQualScore : 4444 55555 2 33 2 2 55555 2 2 4 1 22 2 55 2 6666 4444 2 2 2 4 4444 2 3 66666 2 2 2 4444444444444 1 2 99999
lowQualScore : .... ..... . .. . . ..... . . . . .. . .. . .... .... . . . . .... . . ..... . . . ............. . . .....
lowQualScore : 7777 33333 2 22 4 2 66666 2 2 3 5 99 1 33 2 9999 7777 2 2 2 4 7777 2 4 22222 5 9 7 7777777777777 0 3 77777
consensus : TTTTTCTTAATGCATACTCCCA----AGATGTAACTA-----AGTATATTGTCTTCCATCGGTAGTTCATTCC-TACCTTGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCG-AGAGTGTTTACATGTGCCGA-AATCCATGTTC--ACTAAA-TGGCACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAANTATT-----TCCAAATTACA-CTTGATTCGTCCGTTTAAGACCTCCNCGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGNTTTCGTCAACTGTATGCCATAAATGAATGGATGCG-TT-GATGCCCAGTAGGGAAAATACAA
Reference ( family-719 ) : TTTTTCTTAATGCATACTCCCA----AGATGTAACTA-----AGTATATTGTCTTCCATCGGTAGTTCATTCC-TACCTTGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCG-AGAGTGTTTACATGTGCCGA-AATCCATGTTC--ACTAAA-TGGCACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAANTATT-----TCCAAATTACA-CTTGATTCGTCCGTTTAAGACCTCCNTGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGNTTTCGTCAACTGTATGCCATAAATGAATGGATGCG-TT-G--GCCCAGTAGGGAAAATACAA
gi|98458 : TTTTTCTTAATGCATACTTCCA----AGATGTAACTA-----AGTATATTGTCTTCCATCGGTAATTCATTCC-TACCTTGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCA-AGAGTGTTTACATGTACCGA-AATCCATATTC--ACTAAA-TGGCACATTCTTTTG--GAT-TTTTTC----T----AT-GATATCAT-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCATCAAATATT-----TCCAAATTACA-CTTTATTCGTCCGTTAAAGACCTGCTCGTTTTGAAAT-TC-------------ATATGTGTACGCCAATATATGAGGGTTTTCGTCAACTGTATGCCATAAATGAATG---GCG-TT-----CCCAGTAGGGAAAATACAA
gi|98459 : TTTGTCCTAATGCATACTTTCA----AGATGTAACTATTGTAAGTATATTGTCTTCCATCGGTAGTTCATTCC-TACCTTGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----GGAAAACCG-AGAGTGTTTACATGTACCGA-AATCTATATTC--ACTAAA-TGGCACCTTCTTTTA--GAC-CTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCTTGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAAGTATT-----TCCAAATAACA-CTTGATTCGTCCGTTTAAGACATCCTTGCTTTGAAAT-TC-------------TTATGTGTACGACAATACATGAGGGTTTTCGTCAACTGTATGCCATAAATGAATGGATGCG-TT-----CCCAGTAGGGAAAATACAA
gi|98460 : TTTTTCTTAATGCATACTCCCA----AGATGTAACTA-----AGTTTATTGGCTTCCATCAGTAGTTCATTAC-TACCTTGCAGCTA--TCA-CCATAAAAGACGCAA-TTCA-----AGAAAACCG-AGAGTGTTTACATGTGCCGA-AATACATGTTC--ACTAA-------TCTTCTTTTG--GAC-ATTTTC----T----AT-GATATCAC-TC-TGTGTTTTCTTGAAT-TT----T-ACTGTCAGTACTGTTTTTACCACCAAGTTTC-----TCCAAATTACA-CTTGATTCGCCCGTTTAAGACCTCCATGTTTTGAAAT-TC-------------ATATGTGTACGATAATATATGTTGGATTTCGTCAACTGTATGCCATAAATGAATGGATGCG-TTCGATGCCCAGTAGGGAAAATA
gi|98461 : TTTTTCTTAATGCGTACTCCCA----AGATGTAACTT-----AGTATATTGTCTTCCATCAGTAGTTCACTCC-TACCTTGCAGCTA--TCA-CCATAAAAGACGCAA-TTCG-----AGAAAACTG-AGAGTGTTTACATGTGCCGA-AATACATGTTC--ATTAAA-TGACACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATTA--GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAATTATT-----TCCAAATTACA-CTTGATTAGCCCGTTTAAGACCTCCATGTTTTGAAAT-TC-------------ATATGTGTACAACAATAAATGAGGGATTTCGTCAACTGTATGCCATAAATGAATGGATACGTTT-GATGCCCAGTAGGGAAAATACAA
gi|98462 : TTTTTCTTAATGCATACTTCCA----AGATGTAACTA-----AGTATATTGTCTTCCA-CGGTAATTCATTCC-TACCATGCAGCTA--TCA-CCACAAGAGACGCAA-TTCG-----AGAAAACCG-AGAGTGTTTACTTGTACTGA-AATCCATATTC--ACTAAA-TGGCACCTTCTTTTGT-GTT-TTTTTC----T----AT-GATATCAC-GC-TGTGCTTTCATGAAT-T--------------ATACTGTTTTCATCACCAAGTATT-----TCCAAATTACA-CTTGATTCGTCTGTTTAAGACCTCCTCGTTTTGAAAT-TCATATGTGAAATTCATATGTGTACGACAATATATGAGGGTTTTCGTCAACTGTATGCCATAAAAGAATGGATGTG-TT-----CCCAGAAGGGAAAATA
gi|98463 : TTTTTCTTAATGCATGTAACTA----AGATGTAACTA-----AGTATATTGTCTTCCATCGGTAATTCATTCC-TACCATGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCG-AGAGTGCTTACTTGTACTGA-AATCCTTATTC--ACTAAA-TGGCACCTTCTTTTGTTG-T-TTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCTAGTATT-----TCCAAATTACA-CTTGATTGGTCCGTTTAAGACCTC---GTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGTTTTCGTAAACTGTATGCCATAAATGAATGGATGCG-TT-----CCCAGTAGGGACAATACAA
gi|98464 : TTTTTCTTAATGCATACTTTCA----AGATGTAACTT-----AGTATATTGTCTTCCATCAGTAGTGCATTCA-TACCATGCAGCTA--TCA-CAACAAAAGACGCAA-TTCG-----AG-AAACC---GAGTGTTTACTTGTACCGA-AATCCATATTC--ACCAAA-TGGCACCTTCTTT--------TTTTTCGTTGT----AT-GATATCTC-AC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCGAGTATT-----TCTAAATTACA-TTTGATCCGTCCATTTAAGACCT---TGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGTTTTCGTCAACTGTATGCCATAAATGAATGGATGCG-TT-----CCCAGTAGGGAAAATACAA
gi|98465 : TTTTTTTTCATGCATATTCCCA----AGATGTAACTA-----ACTATATTGTCTTCCACCGGTAGTTCACTCC-TACCTTGCAGCTA--TCA-CCATAAAAGACGCAA-TTCG-----AGAAAACCG-AGAGTGTTAACATGTGACGA-AATACATGTTC--ACTAAA-TGACACCTTCTTTTG--GAT-TTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAATTATT-----TCCAAATTACA-CTTGATTCGCCATTTTAAGACCTCCATGTTTTGAAAT-TC-------------ATATGTGTACGACAGTATATTAGGGATTTCGTCAACTGTAGGTCATAAATGAATGG
gi|98466 : TTTTTCTTAATGCATACTCCCA----AGATGTAACTA-----AGTATATTGTCTTGCATCGGTAGTTCATTCC-TACCTTGCAGCTA--TCA-CCATAAAAGACGCAA-TTCG-----AGAAAACCG-AT--TGTTTACATGTGCCGA-AATACATGTTC--ACTAAA-TGACACCTT---------------TTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAATTATT-----TCCAAATTACA-CTTGATTTGCCCGTTTAAGACCTCCATGTTTTGAAAT-TC-------------ATA-------------ATATGAGGGATTTCGTCAACTGTATGCCATAAATGAATGGATGCGTTT-GATGCCCAGTGGGGATAATACAA
gi|98467 : TTTTTCTTAATGCATATTCCCA----AGATGTTACTA-----AGTTTATTGTCTTCCATCGGTAGTTCAATCG-TACTTTACAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAA-AG-ATAGTGTTTGCATGTACCGA-AATCCATATTC--ACTAAA-TGGCACCTTCTTTTG--AAC-CTTTTC---------ATAGATTTTAC-----GTGCTTTCATGA--------------------ACTGTTTCCACCACCAAGTATT-----TCCAAATTACA-CTTGATTCGTCCGTTTAAGACCTCCTTGTTTTGAAAT-TC-------------ATATGTGTACGACATTATATGAGGGTTTTCGGCAACTGTATGCCATGAATGAATGGATGCG-TT-----CCAAATAGGGAAAATACAA
gi|98468 : TTTTTCTTAATACATACTCCCA----AGATATAACTA-----AGTTTATTATCTTCAATCGGTAGTTCATTCC-TACTTTGCTGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCGAAGGGT-TTTACATGTAC--ATAATACATCTTC--ACTAAA-TGGCACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATTAT-AC-TGTGTTTTCATGAAT-TT----TGATTGTCAGCACTGTTTTTATCACCAA-TATT-------CAAATTACA-CTTGATTTGTCCGTTTA
gi|98469 : TTTATTTTTATGCATAC-CTCACCTTAGATGTAACTG-----AACAAA---TCTT-----G------CACTTC-TCCCGTGCAGCAA--TCGTCCAAAAAATATGCAA-TTCGAAAAAAAAAAAACG-AGACTGTTAACGTGTGATGA-AATCCATATTC--A--AAT-TGGCACCTTTGTTAG--CAC-TTCATC----T----AT-TTTATTATAGCGTGTGTCAGCCTGTTT-TTTTTAT-ACTGTTGGTACTGTTTTCACCACCGATTATT-----TTGAAATTACA-TCT-ATCTCTCCGTTTAAGACCTCATCGTTTCTAAAT-AC-------------ATATATGCATGCTAATCCATGA
gi|98470 : TTTTTTTTAATGCATACTTCCA----ATATGTAACTA-----AGTATATTGTCTTCCGTCGGTA
gi|98471 : TTTTTGTTAATGCATACTCCCA----AGATGTAACTA-----AGTATATTGTCTTCAATCTGTAGTCC---CC-CACC
gi|98472 : TTTTTTTAAAACATATTCCCA----AGATGTAACTA-----AGTATATTGTCTTCCATCAGTAGTTAATTCC-TACCTTGCATCTA--TCA-CCACAAAAGACGCAA-TTTG-----AGAAAACCG-AGAGTGTTTACATGTACCGA-AATCCATATTC--ACTAAA-AGGCACCTTCTTTTG--GAC-TATTTC----A----CT-G---TCGT-G--TGTGATTT----AAT-TT-------CTGT
gi|98473 : TCTTAATGAACACGAGCA----AGATG-----A-----A----ATTGTCTTCAATCAATAGT---TTCTATATTTTGCAGTTAGTTCA-CCAGGAAAGATGCAA-TTGA-----AGGTAACCA-ACATTGTTGACATGTGCTGA-CATTTATTGTC--A-TAAGTTGACACCTATGTTGG--GATATTTTTCA---TGGTAAT-AATGTTAC-AC-TGTGTTTTTCTGAATATT----T-ACTATTGGAAATGTTTTAGCCTCCAATTATTTTTTATCCAAA-------CTGATTTATCTTTTTAA
gi|98474 : TTAATGCATACCCCCA----AGATGTAACTT-----AGTATATTGTCTTCCATCGGTAGTTAACTCC-TACCTTGTAGCTA--TCA-CTATAAAAGACACAA-TTCG-----AGAAAACGG-AGATTGTTTACATGTGCCGA-AATACATGTTC--ACTAAA-TGACACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAATACTGTTTTCACCACCAATTATT-----TCCATATTACA-CTTGATACGCCCGTTTAAGATCTCCATGTTTTGAAAT-TC-------------ATATGTGTACGACAGTATATGAGGGATTCCGTCAACTGTATGCCATAAATGAATGGATGCGTTT-GATGCTAAGAAGGGAAAATACAAagtcatctatatt
gi|98475 : TACTCCCA----AGATGTAACTA-----AGTATATTGTCTTCAATCTGTAGTTC---CC-CACC
gi|98476 : A-----AGTATATTGCATTCTATCAGTAGTTCACTCC-TACCTCGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCG-AGAGAGTTTACATGTGCCGA-AATACATGTTC--ACTAAA-TGGCACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATCAC-GC-GTTGTTTTCATGAAT-CT----T-ACTGTCAGTACTGTTTTCACCACCAAATATT-----TCCAAATTACG-CTCGATTCG-CTGTTTAAGACCTCCATGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGATTTCGTCAACTGTATGCCATAAATGAATGGATGCGTTT-GATGCCCAGTAGGGAAAAT
gi|98477 : TGCAGCTA--TCA-CTGCAAAATGTGTAAATTAG-----AGAAAATCG-ACGTTGTTTACATGTGCAGA-AGTTTGTAATCAAACT--A-TGACACATTTTTTT
gi|98478 : ACAAACAACGCAA-TTCG-----AAGAAATCA-TCAACGTTTACATGTGCTGA-AAT-----------------TGGGACA----TTTG-------TTTTC----T----AT-GAGATTAC-GC-TATGTaaat
gi|98479 : CATGTTC--ACTAAA-TGACACATTCTTTTG--GAC-TTTTTC----T----AT-GATATCAC-GC-TGAGTTTTCATGAAT-TT----T-ACTGTCAGTACCG
gi|98480 : GTGATTTGCTGAATATT----T-ACTGTCTGTAATGTTT-AACCACCCATTATT-----TC--AATTAAAACCTGGTTTGTCCGTTTCAACCCCTCGTGTT---AAATGTA-------------ACATATGGACGACAACTCGTGATACTCTTCGTCAACTGTATCCCGGTAATAAATGGATTCG-TT-
gi|98481 : GTTTAAGACCTCCTCGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGGTTTTGTCAACTGTATGCCATAAATGAATGGATGCG-TT-----CCCAGTAGAGAAAATACAAccaacta
Alignments
lowQualScore : 1111111111111 1 33333
lowQualScore : 4444 55555 2 33 2 2 55555 2 2 4 1 22 2 55 2 6666 4444 2 2 2 4 4444 2 3 66666 2 2 2 4444444444444 1 2 66666
lowQualScore : .... ..... . .. . . ..... . . . . .. . .. . .... .... . . . . .... . . ..... . . . ............. . . .....
lowQualScore : 7777 33333 2 22 4 2 66666 2 2 3 5 99 1 33 2 9999 7777 2 2 2 4 7777 2 4 22222 5 9 7 7777777777777 0 3 88888
consensus : TTTTTCTTAATGCATACTCCCA----AGATGTAACTA-----AGTATATTGTCTTCCATCGGTAGTTCATTCC-TACCTTGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCG-AGAGTGTTTACATGTGCCGA-AATCCATGTTC--ACTAAA-TGGCACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAANTATT-----TCCAAATTACA-CTTGATTCGTCCGTTTAAGACCTCCNCGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGNTTTCGTCAACTGTATGCCATAAATGAATGGATGCG-TT-GATGCCCAGTAGGGAAAATACAA
Reference ( family-719 ) : TTTTTCTTAATGCATACTCCCA----AGATGTAACTA-----AGTATATTGTCTTCCATCGGTAGTTCATTCC-TACCTTGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCG-AGAGTGTTTACATGTGCCGA-AATCCATGTTC--ACTAAA-TGGCACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAANTATT-----TCCAAATTACA-CTTGATTCGTCCGTTTAAGACCTCCNCGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGNTTTCGTCAACTGTATGCCATAAATGAATGGATGCG-TT-GATGCCCAGTAGGGAAAATACAA
gi|98458 : TTTTTCTTAATGCATACTTCCA----AGATGTAACTA-----AGTATATTGTCTTCCATCGGTAATTCATTCC-TACCTTGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCA-AGAGTGTTTACATGTACCGA-AATCCATATTC--ACTAAA-TGGCACATTCTTTTG--GAT-TTTTTC----T----AT-GATATCAT-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCATCAAATATT-----TCCAAATTACA-CTTTATTCGTCCGTTAAAGACCTGCTCGTTTTGAAAT-TC-------------ATATGTGTACGCCAATATATGAGGGTTTTCGTCAACTGTATGCCATAAATGAATG---GCG-TT-----CCCAGTAGGGAAAATACAA
gi|98459 : TTTGTCCTAATGCATACTTTCA----AGATGTAACTATTGTAAGTATATTGTCTTCCATCGGTAGTTCATTCC-TACCTTGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----GGAAAACCG-AGAGTGTTTACATGTACCGA-AATCTATATTC--ACTAAA-TGGCACCTTCTTTTA--GAC-CTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCTTGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAAGTATT-----TCCAAATAACA-CTTGATTCGTCCGTTTAAGACATCCTTGCTTTGAAAT-TC-------------TTATGTGTACGACAATACATGAGGGTTTTCGTCAACTGTATGCCATAAATGAATGGATGCG-TT-----CCCAGTAGGGAAAATACAA
gi|98460 : TTTTTCTTAATGCATACTCCCA----AGATGTAACTA-----AGTTTATTGGCTTCCATCAGTAGTTCATTAC-TACCTTGCAGCTA--TCA-CCATAAAAGACGCAA-TTCA-----AGAAAACCG-AGAGTGTTTACATGTGCCGA-AATACATGTTC--ACTAA-------TCTTCTTTTG--GAC-ATTTTC----T----AT-GATATCAC-TC-TGTGTTTTCTTGAAT-TT----T-ACTGTCAGTACTGTTTTTACCACCAAGTTTC-----TCCAAATTACA-CTTGATTCGCCCGTTTAAGACCTCCATGTTTTGAAAT-TC-------------ATATGTGTACGATAATATATGTTGGATTTCGTCAACTGTATGCCATAAATGAATGGATGCG-TTCGATGCCCAGTAGGGAAAATA
gi|98461 : TTTTTCTTAATGCGTACTCCCA----AGATGTAACTT-----AGTATATTGTCTTCCATCAGTAGTTCACTCC-TACCTTGCAGCTA--TCA-CCATAAAAGACGCAA-TTCG-----AGAAAACTG-AGAGTGTTTACATGTGCCGA-AATACATGTTC--ATTAAA-TGACACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATTA--GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAATTATT-----TCCAAATTACA-CTTGATTAGCCCGTTTAAGACCTCCATGTTTTGAAAT-TC-------------ATATGTGTACAACAATAAATGAGGGATTTCGTCAACTGTATGCCATAAATGAATGGATACGTTT-GATGCCCAGTAGGGAAAATACAA
gi|98462 : TTTTTCTTAATGCATACTTCCA----AGATGTAACTA-----AGTATATTGTCTTCCA-CGGTAATTCATTCC-TACCATGCAGCTA--TCA-CCACAAGAGACGCAA-TTCG-----AGAAAACCG-AGAGTGTTTACTTGTACTGA-AATCCATATTC--ACTAAA-TGGCACCTTCTTTTGT-GTT-TTTTTC----T----AT-GATATCAC-GC-TGTGCTTTCATGAAT-T--------------ATACTGTTTTCATCACCAAGTATT-----TCCAAATTACA-CTTGATTCGTCTGTTTAAGACCTCCTCGTTTTGAAAT-TCATATGTGAAATTCATATGTGTACGACAATATATGAGGGTTTTCGTCAACTGTATGCCATAAAAGAATGGATGTG-TT-----CCCAGAAGGGAAAATA
gi|98463 : TTTTTCTTAATGCATGTAACTA----AGATGTAACTA-----AGTATATTGTCTTCCATCGGTAATTCATTCC-TACCATGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCG-AGAGTGCTTACTTGTACTGA-AATCCTTATTC--ACTAAA-TGGCACCTTCTTTTGTTG-T-TTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCTAGTATT-----TCCAAATTACA-CTTGATTGGTCCGTTTAAGACCT---CGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGTTTTCGTAAACTGTATGCCATAAATGAATGGATGCG-TT-----CCCAGTAGGGACAATACAA
gi|98464 : TTTTTCTTAATGCATACTTTCA----AGATGTAACTT-----AGTATATTGTCTTCCATCAGTAGTGCATTCA-TACCATGCAGCTA--TCA-CAACAAAAGACGCAA-TTCG-----AG-AAACC---GAGTGTTTACTTGTACCGA-AATCCATATTC--ACCAAA-TGGCACCTTCTTT--------TTTTTCGTTGT----AT-GATATCTC-AC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCGAGTATT-----TCTAAATTACA-TTTGATCCGTCCATTTAAGACCT---TGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGTTTTCGTCAACTGTATGCCATAAATGAATGGATGCG-TT-----CCCAGTAGGGAAAATACAA
gi|98465 : TTTTTTTTCATGCATATTCCCA----AGATGTAACTA-----ACTATATTGTCTTCCACCGGTAGTTCACTCC-TACCTTGCAGCTA--TCA-CCATAAAAGACGCAA-TTCG-----AGAAAACCG-AGAGTGTTAACATGTGACGA-AATACATGTTC--ACTAAA-TGACACCTTCTTTTG--GAT-TTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAATTATT-----TCCAAATTACA-CTTGATTCGCCATTTTAAGACCTCCATGTTTTGAAAT-TC-------------ATATGTGTACGACAGTATATTAGGGATTTCGTCAACTGTAGGTCATAAATGAATGG
gi|98466 : TTTTTCTTAATGCATACTCCCA----AGATGTAACTA-----AGTATATTGTCTTGCATCGGTAGTTCATTCC-TACCTTGCAGCTA--TCA-CCATAAAAGACGCAA-TTCG-----AGAAAACCG-AT--TGTTTACATGTGCCGA-AATACATGTTC--ACTAAA-TGACACCTT---------------TTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAATTATT-----TCCAAATTACA-CTTGATTTGCCCGTTTAAGACCTCCATGTTTTGAAAT-TC-------------ATA-------------ATATGAGGGATTTCGTCAACTGTATGCCATAAATGAATGGATGCGTTT-GATGCCCAGTGGGGATAATACAA
gi|98467 : TTTTTCTTAATGCATATTCCCA----AGATGTTACTA-----AGTTTATTGTCTTCCATCGGTAGTTCAATCG-TACTTTACAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAA-AG-ATAGTGTTTGCATGTACCGA-AATCCATATTC--ACTAAA-TGGCACCTTCTTTTG--AAC-CTTTTC---------ATAGATTTTAC-----GTGCTTTCATGA--------------------ACTGTTTCCACCACCAAGTATT-----TCCAAATTACA-CTTGATTCGTCCGTTTAAGACCTCCTTGTTTTGAAAT-TC-------------ATATGTGTACGACATTATATGAGGGTTTTCGGCAACTGTATGCCATGAATGAATGGATGCG-TT-----CCAAATAGGGAAAATACAA
gi|98468 : TTTTTCTTAATACATACTCCCA----AGATATAACTA-----AGTTTATTATCTTCAATCGGTAGTTCATTCC-TACTTTGCTGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCGAAGGGT-TTTACATGTAC--ATAATACATCTTC--ACTAAA-TGGCACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATTAT-AC-TGTGTTTTCATGAAT-TT----TGATTGTCAGCACTGTTTTTATCACCAA-TATT-------CAAATTACA-CTTGATTTGTCCGTTTA
gi|98469 : TTTATTTTTATGCATAC-CTCACCTTAGATGTAACTG-----AACAAA---TCTT-----G------CACTTC-TCCCGTGCAGCAA--TCGTCCAAAAAATATGCAA-TTCGAAAAAAAAAAAACG-AGACTGTTAACGTGTGATGA-AATCCATATTC--A--AAT-TGGCACCTTTGTTAG--CAC-TTCATC----T----AT-TTTATTATAGCGTGTGTCAGCCTGTTT-TTTTTAT-ACTGTTGGTACTGTTTTCACCACCGATTATT-----TTGAAATTACA-TCT-ATCTCTCCGTTTAAGACCTCATCGTTTCTAAAT-AC-------------ATATATGCATGCTAATCCATGA
gi|98470 : TTTTTTTTAATGCATACTTCCA----ATATGTAACTA-----AGTATATTGTCTTCCGTCGGTA
gi|98471 : TTTTTGTTAATGCATACTCCCA----AGATGTAACTA-----AGTATATTGTCTTCAATCTGTAGTCC---CC-CACC
gi|98472 : TTTTTTTAAAACATATTCCCA----AGATGTAACTA-----AGTATATTGTCTTCCATCAGTAGTTAATTCC-TACCTTGCATCTA--TCA-CCACAAAAGACGCAA-TTTG-----AGAAAACCG-AGAGTGTTTACATGTACCGA-AATCCATATTC--ACTAAA-AGGCACCTTCTTTTG--GAC-TATTTC----A----CT-G---TCGT-G--TGTGATTT----AAT-TT-------CTGT
gi|98473 : TCTTAATGAACACGAGCA----AGATG-----A-----A----ATTGTCTTCAATCAATAGT---TTCTATATTTTGCAGTTAGTTCA-CCAGGAAAGATGCAA-TTGA-----AGGTAACCA-ACATTGTTGACATGTGCTGA-CATTTATTGTC--A-TAAGTTGACACCTATGTTGG--GATATTTTTCA---TGGTAAT-AATGTTAC-AC-TGTGTTTTTCTGAATATT----T-ACTATTGGAAATGTTTTAGCCTCCAATTATTTTTTATCCAAA-------CTGATTTATCTTTTTAA
gi|98474 : TTAATGCATACCCCCA----AGATGTAACTT-----AGTATATTGTCTTCCATCGGTAGTTAACTCC-TACCTTGTAGCTA--TCA-CTATAAAAGACACAA-TTCG-----AGAAAACGG-AGATTGTTTACATGTGCCGA-AATACATGTTC--ACTAAA-TGACACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAATACTGTTTTCACCACCAATTATT-----TCCATATTACA-CTTGATACGCCCGTTTAAGATCTCCATGTTTTGAAAT-TC-------------ATATGTGTACGACAGTATATGAGGGATTCCGTCAACTGTATGCCATAAATGAATGGATGCGTTT-GATGCTAAGAAGGGAAAATACAAagtcatctatatt
gi|98475 : TACTCCCA----AGATGTAACTA-----AGTATATTGTCTTCAATCTGTAGTTC---CC-CACC
gi|98476 : A-----AGTATATTGCATTCTATCAGTAGTTCACTCC-TACCTCGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCG-AGAGAGTTTACATGTGCCGA-AATACATGTTC--ACTAAA-TGGCACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATCAC-GC-GTTGTTTTCATGAAT-CT----T-ACTGTCAGTACTGTTTTCACCACCAAATATT-----TCCAAATTACG-CTCGATTCG-CTGTTTAAGACCTCCATGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGATTTCGTCAACTGTATGCCATAAATGAATGGATGCGTTT-GATGCCCAGTAGGGAAAAT
gi|98477 : TGCAGCTA--TCA-CTGCAAAATGTGTAAATTAG-----AGAAAATCG-ACGTTGTTTACATGTGCAGA-AGTTTGTAATCAAACT--A-TGACACATTTTTTT
gi|98478 : ACAAACAACGCAA-TTCG-----AAGAAATCA-TCAACGTTTACATGTGCTGA-AAT-----------------TGGGACA----TTTG-------TTTTC----T----AT-GAGATTAC-GC-TATGTaaat
gi|98479 : CATGTTC--ACTAAA-TGACACATTCTTTTG--GAC-TTTTTC----T----AT-GATATCAC-GC-TGAGTTTTCATGAAT-TT----T-ACTGTCAGTACCG
gi|98480 : GTGATTTGCTGAATATT----T-ACTGTCTGTAATGTTT-AACCACCCATTATT-----TC--AATTAAAACCTGGTTTGTCCGTTTCA-ACC-CCTCGTGTT-AAATGTA-------------ACATATGGACGACAACTCGTGATACTCTTCGTCAACTGTATCCCGGTAATAAATGGATTCG-TT-
gi|98481 : GTTTAAGACCTCCTCGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGGTTTTGTCAACTGTATGCCATAAATGAATGGATGCG-TT-----CCCAGTAGAGAAAATACAAccaacta
blockSeqs : CCTT TTGTA A GT T A AAAAA A T C A AA T TT A GTTG GGTA A A G A TTTA G G TTTTA A T G ATATGTGAAATTC T T CGATG
blockSeqs : . . . . . . . . . A G . . T . A . . . . A . . G . . A . . A T GATG
blockSeqs : . . . . . . . . . A G . . . . . . . . . . . . T . . A . . A T GATG
blockSeqs : . . . . . . . . . C A . . . . . . . . . . . . G . . T . . T T GATG
blockSeqs : . . . . . . . . . C A . . . . . . . . . . . . G . . A . . T . GATG
blockSeqs : . . . . . . . . . C A . . . . . . . . . . . . G . . A . . T . .
blockSeqs : . . . . . . . . . A G . . . . . . . . . . . . T . . T . . A . .
blockSeqs : . . . . . . . . . A G . . . . . . . . . . . . T . . T . . A . .
blockSeqs : . . . . . . . . . C A . . . . . . . . . . . . G . . A . . T . .
blockSeqs : . . . . . . . . . A C . . . . . . . . . . . . T . . A . . A . .
blockSeqs : . . . . . . . . . C A . . . . . . . . . . . . T . . T . . A . .
blockSeqs : . . . . . . . . . C A . . . . . . . . . . . . T . . T . . T .
blockSeqs : . . . . . . . . . T T . . . . . . . . . . . . A . . . . . G
blockSeqs : . . . . . . . . . A G . . . . . . . . . . . . T . . . . .
blockSeqs : . . . . . . . . . A G . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . T A . . . . . . . . . . . .
blockSeqs : . . . . . . . . G . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : TTTTTCTTAATGCATACTCCCA----AGATGTAACTA-----AGTATATTGTCTTCCATCGGTAGTTCATTCC-TACCTTGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCG-AGAGTGTTTACATGTGCCGA-AATCCATGTTC--ACTAAA-TGGCACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAANTATT-----TCCAAATTACA-CTTGATTCGTCCGTTTAAGACCTCCNCGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGNTTTCGTCAACTGTATGCCATAAATGAATGGATGCG-TT-GATGCCCAGTAGGGAAAATACAA
finalCons : TTTTTCTTAATGCATACTCCCA----AGATGTAACTA-----AGTATATTGTCTTCCATCGGTAGTTCATTCC-TACCTTGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCG-AGAGTGTTTACATGTGCCGA-AATCCATGTTC--ACTAAA-TGGCACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAANTATT-----TCCAAATTACA-CTTGATTCGTCCGTTTAAGACCTCCNCGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGNTTTCGTCAACTGTATGCCATAAATGAATGGATGCG-TT-GATGCCCAGTAGGGAAAATACAA
Alignments
lowQualScore : 1111111111111 1 33333
lowQualScore : 4444 55555 2 33 2 2 55555 2 2 4 1 22 2 55 2 6666 4444 2 2 2 4 4444 2 3 66666 2 2 2 4444444444444 1 2 66666
lowQualScore : .... ..... . .. . . ..... . . . . .. . .. . .... .... . . . . .... . . ..... . . . ............. . . .....
lowQualScore : 7777 33333 2 22 4 2 66666 2 2 3 5 99 1 33 2 9999 7777 2 2 2 4 7777 2 4 22222 5 9 7 7777777777777 0 3 88888
consensus : TTTTTCTTAATGCATACTCCCA----AGATGTAACTA-----AGTATATTGTCTTCCATCGGTAGTTCATTCC-TACCTTGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCG-AGAGTGTTTACATGTGCCGA-AATCCATGTTC--ACTAAA-TGGCACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAANTATT-----TCCAAATTACA-CTTGATTCGTCCGTTTAAGACCTCCNCGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGNTTTCGTCAACTGTATGCCATAAATGAATGGATGCG-TT-GATGCCCAGTAGGGAAAATACAA
Reference ( family-719 ) : TTTTTCTTAATGCATACTCCCA----AGATGTAACTA-----AGTATATTGTCTTCCATCGGTAGTTCATTCC-TACCTTGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCG-AGAGTGTTTACATGTGCCGA-AATCCATGTTC--ACTAAA-TGGCACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAANTATT-----TCCAAATTACA-CTTGATTCGTCCGTTTAAGACCTCCNCGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGNTTTCGTCAACTGTATGCCATAAATGAATGGATGCG-TT-GATGCCCAGTAGGGAAAATACAA
gi|98458 : TTTTTCTTAATGCATACTTCCA----AGATGTAACTA-----AGTATATTGTCTTCCATCGGTAATTCATTCC-TACCTTGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCA-AGAGTGTTTACATGTACCGA-AATCCATATTC--ACTAAA-TGGCACATTCTTTTG--GAT-TTTTTC----T----AT-GATATCAT-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCATCAAATATT-----TCCAAATTACA-CTTTATTCGTCCGTTAAAGACCTGCTCGTTTTGAAAT-TC-------------ATATGTGTACGCCAATATATGAGGGTTTTCGTCAACTGTATGCCATAAATGAATG---GCG-TT-----CCCAGTAGGGAAAATACAA
gi|98459 : TTTGTCCTAATGCATACTTTCA----AGATGTAACTATTGTAAGTATATTGTCTTCCATCGGTAGTTCATTCC-TACCTTGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----GGAAAACCG-AGAGTGTTTACATGTACCGA-AATCTATATTC--ACTAAA-TGGCACCTTCTTTTA--GAC-CTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCTTGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAAGTATT-----TCCAAATAACA-CTTGATTCGTCCGTTTAAGACATCCTTGCTTTGAAAT-TC-------------TTATGTGTACGACAATACATGAGGGTTTTCGTCAACTGTATGCCATAAATGAATGGATGCG-TT-----CCCAGTAGGGAAAATACAA
gi|98460 : TTTTTCTTAATGCATACTCCCA----AGATGTAACTA-----AGTTTATTGGCTTCCATCAGTAGTTCATTAC-TACCTTGCAGCTA--TCA-CCATAAAAGACGCAA-TTCA-----AGAAAACCG-AGAGTGTTTACATGTGCCGA-AATACATGTTC--ACTAA-------TCTTCTTTTG--GAC-ATTTTC----T----AT-GATATCAC-TC-TGTGTTTTCTTGAAT-TT----T-ACTGTCAGTACTGTTTTTACCACCAAGTTTC-----TCCAAATTACA-CTTGATTCGCCCGTTTAAGACCTCCATGTTTTGAAAT-TC-------------ATATGTGTACGATAATATATGTTGGATTTCGTCAACTGTATGCCATAAATGAATGGATGCG-TTCGATGCCCAGTAGGGAAAATA
gi|98461 : TTTTTCTTAATGCGTACTCCCA----AGATGTAACTT-----AGTATATTGTCTTCCATCAGTAGTTCACTCC-TACCTTGCAGCTA--TCA-CCATAAAAGACGCAA-TTCG-----AGAAAACTG-AGAGTGTTTACATGTGCCGA-AATACATGTTC--ATTAAA-TGACACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATTA--GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAATTATT-----TCCAAATTACA-CTTGATTAGCCCGTTTAAGACCTCCATGTTTTGAAAT-TC-------------ATATGTGTACAACAATAAATGAGGGATTTCGTCAACTGTATGCCATAAATGAATGGATACGTTT-GATGCCCAGTAGGGAAAATACAA
gi|98462 : TTTTTCTTAATGCATACTTCCA----AGATGTAACTA-----AGTATATTGTCTTCCA-CGGTAATTCATTCC-TACCATGCAGCTA--TCA-CCACAAGAGACGCAA-TTCG-----AGAAAACCG-AGAGTGTTTACTTGTACTGA-AATCCATATTC--ACTAAA-TGGCACCTTCTTTTGT-GTT-TTTTTC----T----AT-GATATCAC-GC-TGTGCTTTCATGAAT-T--------------ATACTGTTTTCATCACCAAGTATT-----TCCAAATTACA-CTTGATTCGTCTGTTTAAGACCTCCTCGTTTTGAAAT-TCATATGTGAAATTCATATGTGTACGACAATATATGAGGGTTTTCGTCAACTGTATGCCATAAAAGAATGGATGTG-TT-----CCCAGAAGGGAAAATA
gi|98463 : TTTTTCTTAATGCATGTAACTA----AGATGTAACTA-----AGTATATTGTCTTCCATCGGTAATTCATTCC-TACCATGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCG-AGAGTGCTTACTTGTACTGA-AATCCTTATTC--ACTAAA-TGGCACCTTCTTTTGTTG-T-TTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCTAGTATT-----TCCAAATTACA-CTTGATTGGTCCGTTTAAGACCT---CGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGTTTTCGTAAACTGTATGCCATAAATGAATGGATGCG-TT-----CCCAGTAGGGACAATACAA
gi|98464 : TTTTTCTTAATGCATACTTTCA----AGATGTAACTT-----AGTATATTGTCTTCCATCAGTAGTGCATTCA-TACCATGCAGCTA--TCA-CAACAAAAGACGCAA-TTCG-----AG-AAACC---GAGTGTTTACTTGTACCGA-AATCCATATTC--ACCAAA-TGGCACCTTCTTT--------TTTTTCGTTGT----AT-GATATCTC-AC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCGAGTATT-----TCTAAATTACA-TTTGATCCGTCCATTTAAGACCT---TGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGTTTTCGTCAACTGTATGCCATAAATGAATGGATGCG-TT-----CCCAGTAGGGAAAATACAA
gi|98465 : TTTTTTTTCATGCATATTCCCA----AGATGTAACTA-----ACTATATTGTCTTCCACCGGTAGTTCACTCC-TACCTTGCAGCTA--TCA-CCATAAAAGACGCAA-TTCG-----AGAAAACCG-AGAGTGTTAACATGTGACGA-AATACATGTTC--ACTAAA-TGACACCTTCTTTTG--GAT-TTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAATTATT-----TCCAAATTACA-CTTGATTCGCCATTTTAAGACCTCCATGTTTTGAAAT-TC-------------ATATGTGTACGACAGTATATTAGGGATTTCGTCAACTGTAGGTCATAAATGAATGG
gi|98466 : TTTTTCTTAATGCATACTCCCA----AGATGTAACTA-----AGTATATTGTCTTGCATCGGTAGTTCATTCC-TACCTTGCAGCTA--TCA-CCATAAAAGACGCAA-TTCG-----AGAAAACCG-AT--TGTTTACATGTGCCGA-AATACATGTTC--ACTAAA-TGACACCTT---------------TTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAGTACTGTTTTCACCACCAATTATT-----TCCAAATTACA-CTTGATTTGCCCGTTTAAGACCTCCATGTTTTGAAAT-TC-------------ATA-------------ATATGAGGGATTTCGTCAACTGTATGCCATAAATGAATGGATGCGTTT-GATGCCCAGTGGGGATAATACAA
gi|98467 : TTTTTCTTAATGCATATTCCCA----AGATGTTACTA-----AGTTTATTGTCTTCCATCGGTAGTTCAATCG-TACTTTACAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAA-AG-ATAGTGTTTGCATGTACCGA-AATCCATATTC--ACTAAA-TGGCACCTTCTTTTG--AAC-CTTTTC---------ATAGATTTTAC-----GTGCTTTCATGA--------------------ACTGTTTCCACCACCAAGTATT-----TCCAAATTACA-CTTGATTCGTCCGTTTAAGACCTCCTTGTTTTGAAAT-TC-------------ATATGTGTACGACATTATATGAGGGTTTTCGGCAACTGTATGCCATGAATGAATGGATGCG-TT-----CCAAATAGGGAAAATACAA
gi|98468 : TTTTTCTTAATACATACTCCCA----AGATATAACTA-----AGTTTATTATCTTCAATCGGTAGTTCATTCC-TACTTTGCTGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCGAAGGGT-TTTACATGTAC--ATAATACATCTTC--ACTAAA-TGGCACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATTAT-AC-TGTGTTTTCATGAAT-TT----TGATTGTCAGCACTGTTTTTATCACCAA-TATT-------CAAATTACA-CTTGATTTGTCCGTTTA
gi|98469 : TTTATTTTTATGCATAC-CTCACCTTAGATGTAACTG-----AACAAA---TCTT-----G------CACTTC-TCCCGTGCAGCAA--TCGTCCAAAAAATATGCAA-TTCGAAAAAAAAAAAACG-AGACTGTTAACGTGTGATGA-AATCCATATTC--A--AAT-TGGCACCTTTGTTAG--CAC-TTCATC----T----AT-TTTATTATAGCGTGTGTCAGCCTGTTT-TTTTTAT-ACTGTTGGTACTGTTTTCACCACCGATTATT-----TTGAAATTACA-TCT-ATCTCTCCGTTTAAGACCTCATCGTTTCTAAAT-AC-------------ATATATGCATGCTAATCCATGA
gi|98470 : TTTTTTTTAATGCATACTTCCA----ATATGTAACTA-----AGTATATTGTCTTCCGTCGGTA
gi|98471 : TTTTTGTTAATGCATACTCCCA----AGATGTAACTA-----AGTATATTGTCTTCAATCTGTAGTCC---CC-CACC
gi|98472 : TTTTTTTAAAACATATTCCCA----AGATGTAACTA-----AGTATATTGTCTTCCATCAGTAGTTAATTCC-TACCTTGCATCTA--TCA-CCACAAAAGACGCAA-TTTG-----AGAAAACCG-AGAGTGTTTACATGTACCGA-AATCCATATTC--ACTAAA-AGGCACCTTCTTTTG--GAC-TATTTC----A----CT-G---TCGT-G--TGTGATTT----AAT-TT-------CTGT
gi|98473 : TCTTAATGAACACGAGCA----AGATG-----A-----A----ATTGTCTTCAATCAATAGT---TTCTATATTTTGCAGTTAGTTCA-CCAGGAAAGATGCAA-TTGA-----AGGTAACCA-ACATTGTTGACATGTGCTGA-CATTTATTGTC--A-TAAGTTGACACCTATGTTGG--GATATTTTTCA---TGGTAAT-AATGTTAC-AC-TGTGTTTTTCTGAATATT----T-ACTATTGGAAATGTTTTAGCCTCCAATTATTTTTTATCCAAA-------CTGATTTATCTTTTTAA
gi|98474 : TTAATGCATACCCCCA----AGATGTAACTT-----AGTATATTGTCTTCCATCGGTAGTTAACTCC-TACCTTGTAGCTA--TCA-CTATAAAAGACACAA-TTCG-----AGAAAACGG-AGATTGTTTACATGTGCCGA-AATACATGTTC--ACTAAA-TGACACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATCAC-GC-TGTGTTTTCATGAAT-TT----T-ACTGTCAATACTGTTTTCACCACCAATTATT-----TCCATATTACA-CTTGATACGCCCGTTTAAGATCTCCATGTTTTGAAAT-TC-------------ATATGTGTACGACAGTATATGAGGGATTCCGTCAACTGTATGCCATAAATGAATGGATGCGTTT-GATGCTAAGAAGGGAAAATACAAagtcatctatatt
gi|98475 : TACTCCCA----AGATGTAACTA-----AGTATATTGTCTTCAATCTGTAGTTC---CC-CACC
gi|98476 : A-----AGTATATTGCATTCTATCAGTAGTTCACTCC-TACCTCGCAGCTA--TCA-CCACAAAAGACGCAA-TTCG-----AGAAAACCG-AGAGAGTTTACATGTGCCGA-AATACATGTTC--ACTAAA-TGGCACCTTCTTTTG--GAC-TTTTTC----T----AT-GATATCAC-GC-GTTGTTTTCATGAAT-CT----T-ACTGTCAGTACTGTTTTCACCACCAAATATT-----TCCAAATTACG-CTCGATTCG-CTGTTTAAGACCTCCATGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGATTTCGTCAACTGTATGCCATAAATGAATGGATGCGTTT-GATGCCCAGTAGGGAAAAT
gi|98477 : TGCAGCTA--TCA-CTGCAAAATGTGTAAATTAG-----AGAAAATCG-ACGTTGTTTACATGTGCAGA-AGTTTGTAATCAAACT--A-TGACACATTTTTTT
gi|98478 : ACAAACAACGCAA-TTCG-----AAGAAATCA-TCAACGTTTACATGTGCTGA-AAT-----------------TGGGACA----TTTG-------TTTTC----T----AT-GAGATTAC-GC-TATGTaaat
gi|98479 : CATGTTC--ACTAAA-TGACACATTCTTTTG--GAC-TTTTTC----T----AT-GATATCAC-GC-TGAGTTTTCATGAAT-TT----T-ACTGTCAGTACCG
gi|98480 : GTGATTTGCTGAATATT----T-ACTGTCTGTAATGTTT-AACCACCCATTATT-----TC--AATTAAAACCTGGTTTGTCCGTTTCA-ACC-CCTCGTGTT-AAATGTA-------------ACATATGGACGACAACTCGTGATACTCTTCGTCAACTGTATCCCGGTAATAAATGGATTCG-TT-
gi|98481 : GTTTAAGACCTCCTCGTTTTGAAAT-TC-------------ATATGTGTACGACAATATATGAGGGGTTTTGTCAACTGTATGCCATAAATGAATGGATGCG-TT-----CCCAGTAGAGAAAATACAAccaacta