lowQualScore : 111 11111 11 11 2222222222 1111 555555555555555555555555555555555 11111 44444444444444444 11111111 111111 1111 2222 11111 11111 222222222222222222 11 22 11 111111 111 1 11 222 1
lowQualScore : 777 22222 3 33 3 2 55 555 1 22 11 5 5 2 7 444 55 2 777 4444 9999999999 2 0000 2 333333333333333333333333333333333 777 1 9999999 3 11111 1 4 3 3 666 0 55555555555555555 2 1 1 1 1 55555555 3 7 44 333333 2 5 7 99 2 333 1111 1 22 888 9 0000 2 33333 0 5 55555 6 5 4 2 000000000000000000 55 2 2 11 0 2 8 55 77 22 1 77 22 22 2 9999 000000 2 111 1 0 6 5 5 11 8 66 333 5
lowQualScore : ... ..... . .. . . .. ... . .. .. . . . . ... .. . ... .... .......... . .... . ................................. ... . ....... . ..... . . . . ... . ................. . . . . . ........ . . .. ...... . . . .. . ... .... . .. ... . .... . ..... . . ..... . . . . .................. .. . . .. . . . .. .. .. . .. .. .. . .... ...... . ... . . . . . .. . .. ... .
lowQualScore : 555 55555 6 88 4 5 44 111 2 88 22 5 3 6 5 888 22 0 666 2222 5555555555 0 8888 0 000000000000000000000000000000000 111 9 4444444 9 33333 7 4 9 8 444 1 66666666666666666 7 9 6 9 9 00000000 0 6 44 555555 9 7 9 00 0 555 8888 6 44 666 5 1111 0 11111 5 2 55555 2 6 0 0 777777777777777777 44 2 0 55 6 9 2 55 22 99 8 44 99 99 1 7777 444444 5 222 1 0 0 0 0 99 2 22 000 0
consensus : TCCACAT---ACG-----ATATTTTCA--AAGTCGGACATGGTATTGTTAACA-TAAACACCTTGT-GTTCT-NCCNGNCAAATAAGATTT--GAACCA-NT-CG--AT----CGA-C-T----C-A-CN---CCC-ATC------AGTT------------CTN---A---CTTACG-ACA-TAAAAT--GT--CGTGATCAACTGTATCAAAC----GCCTTCT-GTAGATCGAGCANAA---CCATGCC--GGTATA-A----A--GAC-CTTT-TG-C-AT-TNTNATTTTTNATATGATCCGAN--AGGTGAATAAGGCANGTATCAGT-GGA-GT---A---NTTCCTTCN-AAANCCGGA-CTGA-AA-C--TCATACAGNAGAN-NATTNTTANCT-AAAA-AAGN-------TT-CN---AA-TTGGTT-ATATACAGANCTTTCTAGAACTTTNGANACA--AT--A--TAAA--A--TG--CTAACTGGCCTA-TAGTTAG--ATAC-----ATCAGACCTAN-CATTCTTT-TTAAACAAAGGTTTTACT-TT-GGC--ACTTTTAAGATCACACGGAATTTCATTACTAGTAATGGAA
Reference ( gi|110230 ) : TCCACAT---ACA-----ATATTTTCA--AAGTCGGACACGGTATTGTTAATA-TAAACACCTTGT-GTTCT-ACCTGACAAGTACGATTT--AAACCA-CT-CG--AT----TGA-C-T----C-A-CG---CCC-ATC------AGTT------------CTT---A---CTTACG-ACA-TAAAAT--GT--TGTGATCAACTGTATCGAAT----GCTTTTT-GCAGATCAAGCATAA---TCATGCC--A--ATA-A----ATTGGC-CTTT-TG-C-CT-TTTAATTTTTTATGTGATCTGAG--AGGTGAGTAAGGCAGGAGTCAGT-CGA-GT---A---GTTCCCTCG-GAATCCACT-CTGA-AG-A--TCATATAACATAT-TATTGTTAGTT-AAAA-AAGT-------TT-CT---AA-CTGATT-ATATACAGCCCTTTCTAGAATTTTAGAAACA--ATTGA--TAAA--A--TA--CTAACTGGTCTA-TAGTTAG--ATAC-----ATCAGACCTAA-TATTCTTT-TTAAGCAAAGGTTTTACT-TT-GGC--ACTTTTAAGATTACACAGAATTTCATTACTATTTATCGAA
gi|110229 : TCCACAT---ACA-----ATATTTTCA--AAGTCGGACATGGTATTGTTAATA-TAAACACCTTGT-GTTCT-ACCTGACAAGTACGATTG--AAACCA-CT-CG--AT----TGA-C-T----CCA-CG---CCC-ATC------AGTT------------CTA---A---CTTACG-ACA-TAAAAT--GT--TGTGATCAACTGTATCGAAT----GCTTTTT-GCAGATCAAGCATAA---TCATGCC--T--ATG-ACATCATAGGC-CTTT-TG-C-CT-TTTGATTTTTTATGTGATCTGAG--AGGTAAGTAAGGCAGGAGTCAGT-CGA-GT---A---GTTCCCTCG-GAATCCACT-CTGA-AG-A--TCATATAACATAT-TATTGTTAGTT-AAAA-AAGA-------TT-CT---AA-CTGATT-ATATACAGCTCTTTCTAGAATTTAAGAAACA--ATTGA--TAAA--A--TA--CTAACTGGTCTA-TAGTTAA--A-AC-----ATCAGACCTAT-CATTCTTT-TTAAACAAAGGTTTTACT-TT-GGC--ACTTTTAAGATCACAAGGAAGTTCATTACT
gi|110232 : TCCACAC---ACA-----ATATTTTCA--AAGTCGGACATGGTATTGTTAATA-TAAACACCTTGT-GTTCT-ACCTGACAAGTACGATTG--AAACCA-CT-CG--AT----TG------------------CCC-ATC------AGTT------------CTA---A---CTTACG-ACA-TAAAGT--GT--TGTGATCATCTGTTTTAAAT----GCTTTTT-GTAGATCAAGAATAA---TCATGCC--A--GCA-A----ATAGGC-CTTT-TG-C-CT-TTTGATTTTTTATGTGATCTGAG--AGGTGAGTAAGGCAGGAGTCAGT-CAA-GT---A---GTTCCCTCG-GAATCCACT-CTGA-AG-A--TCATATAACATAT-TATTGTTAGTTAAAAA-AAGG-------TT-AT---AA-CTGATT-ATATACAGCTCTTTCTAGAATTTTAGAAACA--ATTGA--TAAA--A--TA--CTAACTAGTCTA-TAGTTAG--ATAC-----ATAAGACCTAT-CATTCTTT-TTAAACAAAGGTTTTACT-TT-GGC--ACTTTTAAGATCACACGGAATTTCATTACTAtgtaatggaa
gi|110231 : TCCACAT---ACA-----ATATTTTCA--AAGTCGGATATGGTATTGTTAATA-TAAACGCATTGT-GTTCT-ACCAGACAAATACGATTG--AAACCA-CT-CG--AT----TGA-C-T----CCA-CG---CCC-ATC------AGTT------------CTA---A---CTTACG-ACA-TAAAAT--GT--TGCGATCACCTGTGTCGAAT----GCTTTTT-GCAGATCAAGCATAA---TCATGCC--A--GTA-A----ATAGAC-CTTC-TG-C-CT-TTTGATTTTTTATGTGATCTGAG--AGGTAAGTAAGGCAGGAGTCAAT-CGA-AT---A---GTTCCCTCG-GAATCCACT-CTGA-AG-A--TCATATAACATAT-TATTGTTAGTTAAAAA-AAGA-------TT-CT---AA-CTGATT-ATATACAGCTCTTTCTAGAATTTTAGAAACA--ATAGA--TAAA--A--TA--CTAACT-GTCTA-TAGCAAG--ATAC-----ATCAGACCTAT-CATTGTTT-TTAAACAAAGGTTTTACT-TT-GGC--ACTTTTAAGATAAAATGGAATTTCATTACTAGTAATGGAAgtaat
gi|110233 : TCTACAT---ACA-----ATATTTTCA--AAGTCGGACATGGTATTGTTGATT-TAAACACCTTGT-GTTCT-ACCTGACAAGTACGATTA--AAACCA-CT-CG--AT----TGA-C-T----CGA-CG---CCC-ATC------AGTT------------CTA---A---TTTATG-ACA-TAAAAT--GT--TGTGATCAACTGTATCGAAT----GCTTTTT-GCAGATCAAGCATAA---TCATGCC--A--GTA-A----ACAGGC-CTTT-TG-C-CT-TTTGATTTTTTATGTGATCTGAG--AGTTGAGTAAGGTAGGAGTCAGT-CGA-GT---A---GGTCCCTCG-GAATCCACT-CTGA-AG-A--TCATATAACATAT-TATTGTTAGTT-AAAA-AAGG-------TT-CT---AA-ATGATT-ATATACAGCCGTTT-TAGAATTTTAAAAACA--ATTGA--TAAA--A--TA--CAAACTGGTCTA-TAGTTAG--ATAC-----AT
gi|110234 : TCCACATGTTACA-----G-ATTT--A--TACTCTGAAAAAACATTGTTAGCA---ATGACTTTTT-TTTCT-TCCTGCTAAATAACACAT--GAACCA-AT-CA--GT----ATA-T-T----T-AACA---CCC-ATT------AACT------------TTA---G---TTTACC-ACA-TAAAAT--AT-----GATCAACTGTTTCAAAG----GCTTTTT-GTAAATCTAACATAA---CCATGCCTGT--ATA-A----A--GTC-CTTC-GG-CACT-ATT-GCTTCTAATATGGTACATT--AAGTGGGCAAAGCAAGTGTCAAC-AGA-ATATGA---ATTCCT----AAA---AC--CTGACAGCAATTCATACAATAAAC-AGTTGTCAACT-AAAA-A--T-------TT-CTCA-AG-TTGTGT-ATATACAAACCTTTATAGAATTTTAGACACA--ATACT--TAAA--A--TA--ATAACTGGTATA-TAGTT------------------GCCTTA-CTTTTTTC-TTGTACAGAGGTTTTGCT-CTAGAT--ACTTTCA
gi|110235 : TCCACATGTCACAGATTCATACTCTGA--AA-----ATACAGTGTTACCAAT----AACTGTTTGT-TTTCT-TCCTGTTAAATAAGA---------CA-TTACG---T----TA-----------A-CA---CCC-ATC------AACT------------TTA---G---TTTACT-ACA-TAAATT--AT--GATGATTAATTGTACCATAG----GCTTTTT-GTACATCTAAAATAA---CCATGCC--T--GTA-T----AATGGCACTAT-TG-C----------TTCTTATGTGATCCATT--AAGTGGACAAGGCAAGTATCAGTGCAATAT---A---AATTCCT---AAAACCTGA-CTGC-AA-T--TCATACAATTAAA-TGTTGTCAACT--AAG-AAGTTATCATGTT-CTC--GA-GTG--C-ATAAACTGGCCTTTCTAGAACTTTAGATAC----TCTACTTAAA--A--TA--TTAACTGGTCTA-TAGTTGC--CTAC-----CTCA
gi|110236 : CGT---ATG-----AAATGTTCATGAAATCCGACATTGTATTATTAACA-TTTATAGATTGT--TTATGATCAGACAAACAAGATTA--AAACCA-CT-CA--AT----CGA-T-TTTATC-A-CA---TTT-AT--------GTT------------A-----A---ATTACG-ACA-TTAATT--GC--CACGATCAACTGTA---AATAAAAGCCTTCT-GAAGGTCAAACATAACATTCTTGT------ACA-A----A--GAC-CTCT-TG-C-AT-TTTTACTTTTAATCTGGCCCGTC--AAATGA--AAGGCAGGAGACAGT-GGA-AT---A---GAAATATCT-AAAGCCACT-TTAA-AG-
gi|110237 : CGT---ATG-----AAATGTTCATGAAATCCGACATTGTATTATTAACA-TTTATAGATTGT--TTATGATCAGACAAACAAAAATG--AAACCA-CT-CA--AT----TGATC-T----C-A-C----CGC-ATT------TATT------------TTA---A---ATTACG-ACA-TTAAAT--AC--CACGATCAACTGTA---AATAAAAGTCTTTT-GAAGGTCAAATATAACATTCTTGT------ACA-A----A--GAC-CTCT-TG-C-ggtactgcatgtcagaatataaatggtcatttatcgttaaaaag
gi|110238 : ATTGTTAACA-CTAACTGTTTGTTGTCAT--CCTGTTAAATAAGCCAT--GAACCA-AT-CAGTAT----T---T-T----A-A-CA---CCC-ATT------AA--------------CTT---AAG-TTTACC-ACA-TAAAAT--AT--GGTGATCAACTGTATCA-------GCTTTTT-GTAAATCTAACA--A---CCATGCC--TGTATA-A----A--GCC-CTTT-AG-CACT-ATTG-CTTCTAATATGGTTCATT--AAGTGGATGAGGCAAGTATTAGT-AGA-AT---ATGAATTC--TTA-AAA--CATGACTGC-AA-T--TCATACAATAAAT-TGTTGTCAACT-AAGA-A-GT-------TC-TT---AAATTGAGT-ATTTACAGACCTTTCTAGAATTTTTGACACA--ATACT--CAAA--A--TA--CTAACTGGTCTT-TAGTT
gi|110239 : ATTGTTAACACTAA---CCTTGT-TTTCT-TCCCGTTAAATAAGACAT--GAACCA-AT-CA--GTATTTTGA----------A-CA---CCC-ATT------GACT-------------TT---A---ATT--------TAAAAT--AT--GATGATCAACTGTATCAAAG----ACTTTTTTGTAAATCTAACATAA---CCATGCC--TGTATA-A----A--GAC-CTTTATGGT-CC-ATTAATT----------------------GGACAAGGCAAGTATTAGT-AGG-AT---ATGAATTCCT--A-AAATCTGA--CTGC-AA-T--TCATACAAAAAAT-TGTTCTCAACT-AAGA-AGTT-------CT-CA---AG-TTGAGT-ATACATAGACCTTTCTAGAATTTAAGCA-TA--ATACT--TAAA--A--TA--CTAACTGGTCTA-TAGTTGC--CTAC-----CTCAAA-ATAACTTTTTTTT-TTGTACAAAGGTTTTACT-CT-AAC-------TAAGATCA
gi|110240 : TTGTTAATA-TAAACACCTTGT-ATTTT-ACCTGACAAGTACGATTG--AAACCA-TT-CG--AT----TGA-C-T----CCA-CA---CCC-ATC------AGTT------------CTA---A---CTTACG-ACA-TAAAAT--GT--TGTGATCAACTGTATCGAAT----GCTTTTT-GCAGATCAAGCATAA---TCATGCC--A--GTA-A----ATAGGC-CTTT-TG-C-CT-TTCGATTTTTTATGTGATCTGAG--AGGTGAGTAAGGCAGGAGTCAGT-CGA-GT---A---GTTCTCTCG-GAATCCACT-CTGA-AG-A--TCATATAACATAT-TATTGTTAGTT-AAAA-AAGA-------TT-CT---AA-CTGATT-ATGTACAGCTCTTTCTAGACTTTTAGCAACA--ATTGA--TAAA--A--TA--CTAACTGGTCTA-TAGTAAG--ATAC-----ATCAGACCTAT-CATTCTTT-TTAAACAAATGTTTTACT-TT-GGC--ACTTTTAAGATCACACGGAATTTCATTACTAGTAATGGAA
gi|110241 : TTGT-GTTTG-ATTGGACAAATACGATTTGAAAA--------G--AT----TTA----------A-TG---TTCTATC------AGTTAAATGATAAAGTTTC---A---GTT-TGTACAGTAAGAT--TT--CATGATCAACTAGATCAAAT----GCTTTTT-GTAGATCTAG
gi|110242 : TGT-GATCT-TTCGGTTAGATAAGATTT--GAACCA-AT-TT--AT----CGA-C-G----CGA-CT---CCC-AT---------TT------------CAG---AGAGCTTATT-ACA-TAGAAT--AA--CGTGGTCAACGGTATCAAAC----GCCTTCT-GTAGGTCGAGTAAAA---CCATTCC--GGTATA-A----A--AAC-CATT-TG-C-AT-TGTTATGTTTAATAAAATCAAAA--AGGTGAATAAGACATGTATCAGT-GGA-GT---A---TTTACTCCT-AAAACCGAA-CTGG-AA-C--TCATACAGAAGAG-AATTTTTATCT-AAAA-AATC-------CG-CA---AA-TTGGTT-ATATACAGAACGCTCTAGAACTATTGATATACCATT----TAGT--A--TG--CTAACTGGCCTA-TAATTA
gi|110246 : TGT-GATCT-TTCGGTTAGATAAGATTT--GAATCAACT-T---AT----CGA-C-G----CGA-CT---CCC-AT---------TT------------CAG---AGAGCTTATT-ACA-TAGAAT--AA--CGTGGTCAACGGTATCAAAC----GCCTTCT-GTAGGTCGAGTAAAA---CCATTCC--GGTATA-A----A--GAC-TATT-TG-C-AT-TGTTATGTTTAATAAAATCAAAA--AGGTGAATAAGACATGTATCAGT-GGA-GT---A---TTTACTTCT-AAAACAGGA-CTGG-AA-C--TCATACAGAAGAG-AAATTTTAACC-AAAA-AAGT-------CCGCA---AA-TTGGTT-ATATACAGAACGCTCTAGAAGTTTAGATATA--AC--A--TTAAGTA--TG--CTAACTGGTCTA-TGGTGGGGCATAA-----ATTAG
gi|110244 : TGT-GATCT-TTCGGTTAGATAAGATTT--GAACCA-AT-TT--AT----CGA-C-G----CGA-CT---CCC-AT---------TT------------CAG---AGAGCTTATT-ACA-TAGAAT--AA--C-TAGTCAACAGTATCAAAC----GCCTTCT-GTAGATCGAGTAAAA---CCATGCC--GGTATA-A----A--GAC-CCTT--G-C-AT-CGTTATGTTTGATAAAATCAAAC--AGGCGAATAAGACATGTATCAGT-GGA-GT---A---TTTACTCCT-AAAACCGGA-CTGA-AA-C--TCATACAGAAGAG-AATTTTTATCT-AAAA-AATC-------CG-CA---AA-TTGGTT-ATATACAGAACGCTCTAAAACTTTTGATACAACATTAA--T--T--A--TG--CTAACTGGCCTA-TAATTA
gi|110243 : TGT-GATCT-TTCGGTTAGATAAGATTT--GAACCA-TT-TT--AT----CG----T----C-G-CGACTCCC-AT---------TT------------CAG---AGAGCTTATT-ACA-TAGAAT--AA--CGTGGTCAACGGTATCAAAC----GCCTTCT-GTAGGTCGAGTAAAA---CCATTCC--GGTATA-A----A--AAA-CATT-TG-C-AT-TGTTATGTTTAATAAAATCAAAA--AGGTGAATAAGACATGTATCAGT-GGA-GT---A---TTTACTCCT-AAAACCGGA-CTGG-AA-C--TCATACAGAAGAG-AATTTTTATCT-AAAA-AATC-------CG-CA---AA-TTGGTT-ATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAAGTA--TG--CTAACTGGCCTA-TAATTAccaacttccaaaggactacactttttgtaaattgggctgactcttgcagtttt
gi|110245 : TGT-GATCT-TTCGGTTAGATAAGATTT--GAACCA-TT-TT--AT----CGA-C-G----CGA-CT---CCC-AT---------TT------------CAG---AGAGCTTATT-GCA-TAGAAT--AA--CGTGGTCAACGGTATCAAAC----GCCTTCT-GTAGGTCGAGTAAAA---CCAATCC--GGTATA-A----A--AAC-CATT-TG-C-AT-TGTTATGTTTAATAAAATCAAAA--AGGTGAATAAGACATGTATCAGT-GGA-GT---A---TTTACTCCT-AAAACCGGA-CTGG-AA-C--TCATACAGAAGAG-AATTTTTATCT-AAAA-AATC-------CG-CA---AA-TTGGTT-ATAGACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAA--G--TATGCTAACTGGCCTA-TAATTAccaacttccaaaggactacactttttgtaaatcgggctgactcttgcagtttt
gi|110247 : TGT-GATCT-TTCGGTTAGATAAGATTT--GAACCA-AT-TT--AT----CGA-CGT----G-A-CT---CCA-AT---------TT------------CAG---AGAGCTTA-----A-TAA---------TGTGGTCAATGGTATCAAAC----GCCTTCT-GTAGATCATGTAAAA---CTATTCC--GGTATA-A----A--GAC-CATT-TG-C-AT-TGTTATGTTTAATTAAACCAAAA--AGGTGAATAAGACATGTATCAGT-GGA-GT---A---TTTCCTCCT-AAAACAAGA-CTGA-AA-C--TCATACAGAAGAG-AATTTTTATCT-AAAA-AATC-------CG-CC---AA-TTGGTT-ATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAAGTA--TG--CTTACTTGCCTA-TAATTA
gi|110248 : CAGATAAGACTG--AAACCA-CT-CA--AC----TGA-C-TT---C-A-CC---CCG-AT---------TT------------CTTTTAA---TTTGTG-GAA-TAAAAT--CC--CATGTTCAACTGTATCAAAA----GCCTTCT-GAAGGTCCGACATAA---TAATAC
gi|110249 : TAAGATTT--GAACCA-AT-GT--AT----CGA-C-G----CGA-CT---CCC-ATTTCAGAGAGTT------------ATT---A---CATA-G-A-A-TAA--C--GT--TGT---CAACGGTATCAAAC----GCCTTCT-GTAGATCTAGTAAAA---CCATTCC--GGTATA-A----A--GAC-CATT-TG-C-AT-TGTTATGTTTAATAAAATCAAAA--AGGTGAATAAGACATGTATCAGT-GGA-GT---A---TTTACTCCT-AAAACCGGA-CTGA-AA-C--TCATAAAGAAGAG-AATTTTTATCT-AAAA-AATC-------TG-CA---AA-TTGGTT-ATATACAGAACGCTCTAGAACATTTGATATA--AC--A--TTAAGTA--TG--CTAACTGGCCTA-TAATTA
gi|110250 : -ACA-TAAAATACGTAGTATTGTCAATTGTATCATAG----GCTGTTT-GTAGGTCAAGCATGA---TCATACC--A--GTGTA----AGAGGC-CATT-TA-----------------ATGTAGT--AAGTTAAATGGACAAGGCACGAATCTGT-AGA-GA---A---ATTTGTTCG-ATATCCTGA-CTGA-AA-T--TCATATTGTA-ATCTATTTTTAATT-AAAA-ATGT-------TT-TA---AG-ATGGTT-GTATACAACCCTTTCTAAAAGTTTGGAGACT--AT--A--CAAAGGA--TG--CTAACTTGTCTA-TAGTTGC--CTACCCCCAGTCTGAC---A-TATTTTTTCTTAAAGAGGGGTTTGACTCTT-GATG-ACTTT
gi|110251 : --TGTGATCTACAGTATCAAAA----GCTTTTT-GTAGATCTAGCAGAA---TCATACC--T--ACA-AC---ATTACC-CTTA-TC-C-ATATCCAG--CCTTATATAATCTGTC--AAATGGATGAGACGCATGTCAGT-TGA-AA---A---AAACACTTGTGGACCCTGA-CTGA-AA-T--TTATATAACA-ATGTGTT-TTCTTT-GAAATAAGA-------TT-C----AA-CTTGTTCATAAACAA-TTTTTCAAATATCTTAGACACA--agctca
gi|110252 : TTTCT-GTAGATCGAGTAAAA---CCATTCC--GGTATA-A----A--GAC-CATT-TG-C-AT-TGTTATGTTTAATAAAATCAAAA--TGGTGAATAAGACATGTATCAGT-GGA-GT---A---TTTACTCCT-AAAACCGGA-CTGA-AA-C--TCATACAGAAGAG-AATTTTTATCT-AAAA-A-----------T-CCGCAAA-TTGGTT-ATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAA--GTCTG--CTAACTGGCCTATTAGT
gi|110253 : --TCATATAGTA-ATCTACGTTTAATT-AAAA-GTGT-------TT-CA---AG-TTCATT-GTATAAATCCTTTTCTAAAATTTTGGACACA--AT--A--CAAAGGA--TG--CTAACCGACCGA-TAGTTGC--CCAC-----TTCAG-TATGA-CACTTTTTCTTAAATAAAGGTTTGACT-CT-TGCTGACTT
Alignments
lowQualScore : 11 2222222222 222222222222222222222222 1111 11111 22 11111 111 111
lowQualScore : 1 55 333 0 11 55 1 1 1 1 1 2 4 1 8888888888 1 3 22 888888888888888888888888 666 1 77777 22 44 4 1 5 1 0 1 6666 3 22 22 4 1 0 2 2 2 3 0 66 1 1 0 1 333 1111 2 666 1 3 2 1 2 22 2 1 3 1 444444 1 4444 1 33 1 2 1 1 22 99999 0 22 22 2 33333 3 000 1 8 000 1 3 3 3 88 6
lowQualScore : . .. ... . .. .. . . . . . . . . .......... . . .. ........................ ... . ..... .. .. . . . . . . .... . .. .. . . . . . . . . .. . . . . ... .... . ... . . . . . .. . . . . ...... . .... . .. . . . . .. ..... . .. .. . ..... . ... . . ... . . . . .. .
lowQualScore : 4 77 555 2 88 22 0 0 5 0 9 9 0 9 9999999999 9 5 66 000000000000000000000000 555 8 00000 44 88 7 7 0 0 6 9 6666 6 55 55 0 8 1 3 3 0 5 2 88 0 0 9 4 333 5555 0 111 0 1 3 0 5 00 9 0 8 9 666666 0 0000 9 00 3 4 0 0 66 88888 1 00 88 0 44444 4 888 7 1 000 0 6 6 6 66 7
consensus : TCCACGTACGATATTTTCA--AAGTCGGACATGGTATTGTTAACA-TAAACACCTTGTGTTCTN-CCNGNCAAATAAGATTTGAACCANT-CGATCGA-C-T----C---A-CNCCCA--TCAGTT------------CTAA---CTTACG-ACA-TAAAAT--GTCGTG--ATCAACTGT--ATCAAACGCCTTTT-GTAGATCGAGCATAACCATGCC---GGTATAA-A--G--ACCTTT-TGCATTNTTATTTTTAATGTGATCC-GANAGGTGAATAAGGCANGTGTCAGTGGAGT---AN---TTC-CTCCTAAAACCGGACTGAAACTCATACAGNAGANNATTNTTANCT-AAAA-AAGNC-T-CAAATT----GGT-TATATACAGANCTTTCTAGAACTTTNGANACA--AT--A--TAAA--A--TGCTAACTGGTCTA-TAGTTAN--NTACNTC---AGACCTANCA---TTTTTTTTAAA-CAAAGGTTTTACT-CT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAATGGAA
Reference ( family-718 ) : TCCACATACGATATTTTCA--AAGTCGGACATGGTATTGTTAACA-TAAACACCTTGTGTTCTN-CCNGNCAAATAAGATTTGAACCANT-CGATCGA-C-T----C---A-CNCCCA--TCAGTT------------CTNA---CTTACG-ACA-TAAAAT--GTCGTG--ATCAACTGT--ATCAAACGCCTTCT-GTAGATCGAGCANAACCATGCC---GGTATAA-A--G--ACCTTT-TGCATTNTNATTTTTNATATGATCC-GANAGGTGAATAAGGCANGTATCAGTGGAGT---AN---TTC-CTTCNAAANCCGGACTGAAACTCATACAGNAGANNATTNTTANCT-AAAA-AAGNT-T-CNAATT----GGT-TATATACAGANCTTTCTAGAACTTTNGANACA--AT--A--TAAA--A--TGCTAACTGGCCTA-TAGTTAG--ATACATC---AGACCTANCA---TTCTTTTTAAA-CAAAGGTTTTACT-TT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAATGGAA
gi|110229 : TCCACATACAATATTTTCA--AAGTCGGACATGGTATTGTTAATA-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTGAAACCACT-CGATTGA-C-T----CC--A-CGCCCA--TCAGTT------------CTAA---CTTACG-ACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCCTATGACATCATA--G--GCCTTT-TGCCTTTTGATTTTTTATGTGATCT-GAGAGGTAAGTAAGGCAGGAGTCAGTCGAGT---AG---TTC-CCTCGGAATCCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGAT-T-CTAACT----GAT-TATATACAGCTCTTTCTAGAATTTAAGAAACA--ATTGA--TAAA--A--TACTAACTGGTCTA-TAGTTAA--A-ACATC---AGACCTATCA---TTCTTTTTAAA-CAAAGGTTTTACT-TT-GGC--ACTTTTAAGATCACAAGGAAG-TTCATTACTTGTAATGGAA
gi|110230 : TCCACATACAATATTTTCA--AAGTCGGACACGGTATTGTTAATA-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTTAAACCACT-CGATTGA-C-T----C---A-CGCCCA--TCAGTT------------CTTA---CTTACG-ACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---A--ATAA-ATTG--GCCTTT-TGCCTTTTAATTTTTTATGTGATCT-GAGAGGTGAGTAAGGCAGGAGTCAGTCGAGT---AG---TTC-CCTCGGAATCCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGTT-T-CTAACT----GAT-TATATACAGCCCTTTCTAGAATTTTAGAAACA--ATTGA--TAAA--A--TACTAACTGGTCTA-TAGTTAG--ATACATC---AGACCTAATA---TTCTTTTTAAG-CAAAGGTTTTACT-TT-GGC--ACTTTTAAGATTACACAGAAT-TTCATTACTATTTATCGAA
gi|110231 : TCCACATACAATATTTTCA--AAGTCGGATATGGTATTGTTAATA-TAAACGCATTGTGTTCTA-CCAGACAAATACGATTGAAACCACT-CGATTGA-C-T----CC--A-CGCCCA--TCAGTT------------CTAA---CTTACG-ACA-TAAAAT--GTTGCG--ATCACCTGT--GTCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---AGTAAAT-A--G--ACCTTC-TGCCTTTTGATTTTTTATGTGATCT-GAGAGGTAAGTAAGGCAGGAGTCAATCGAAT---AG---TTC-CCTCGGAATCCACTCTGAAGATCATATAACATATTATTGTTAGTTAAAAA-AAGAT-T-CTAACT----GAT-TATATACAGCTCTTTCTAGAATTTTAGAAACA--ATAGA--TAAA--A--TACTAACT-GTCTA-TAGCAAG--ATACATC---AGACCTATCA---TTGTTTTTAAA-CAAAGGTTTTACT-TT-GGC--ACTTTTAAGATAAAATGGAAT-TTCATTACTAGTAATGGAA
gi|110232 : TCCACACACAATATTTTCA--AAGTCGGACATGGTATTGTTAATA-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTGAAACCACT-CGATTG-----------------CCCA--TCAGTT------------CTAA---CTTACG-ACA-TAAAGT--GTTGTG--ATCATCTGT--TTTAAATGCTTTTT-GTAGATCAAGAATAATCATGCC---AGCAAAT-A--G--GCCTTT-TGCCTTTTGATTTTTTATGTGATCT-GAGAGGTGAGTAAGGCAGGAGTCAGTCAAGT---AG---TTC-CCTCGGAATCCACTCTGAAGATCATATAACATATTATTGTTAGTTAAAAA-AAGGT-T-ATAACT----GAT-TATATACAGCTCTTTCTAGAATTTTAGAAACA--ATTGA--TAAA--A--TACTAACTAGTCTA-TAGTTAG--ATACATA---AGACCTATCA---TTCTTTTTAAA-CAAAGGTTTTACT-TT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAAT
gi|110233 : TCTACATACAATATTTTCA--AAGTCGGACATGGTATTGTTGATT-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTAAAACCACT-CGATTGA-C-T----CG--A-CGCCCA--TCAGTT------------CTAA---TTTATG-ACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---AGTAAAC-A--G--GCCTTT-TGCCTTTTGATTTTTTATGTGATCT-GAGAGTTGAGTAAGGTAGGAGTCAGTCGAGT---AG---GTC-CCTCGGAATCCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGGT-T-CTAAAT----GAT-TATATACAG-CCGTTTTAGAATTTTAAAAACA--ATTGA--TAAA--A--TACAAACTGGTCTA-TAGTTAG--ATACAT
gi|110234 : ATTGTTAGCA---ATGACTTTTTTTTCTT-CCTGCTAAATAACACATGAACCAAT-CAGTATA-T-T----T---AACACCCA--TTAACT------------TTAG---TTTACC-ACA-TAAAAT--AT---G--ATCAACTGT--TTCAAAGGCTTTTT-GTAAATCTAACATAACCATGCC---TGTATAA-A--G--TCCTTC-GGCACTATTGCTTCTAATATGGTAC-ATTAAGTGGGCAAAGCAAGTGTCAACAGAAT---ATGAATTC-CT---AAAACCTGACAGCAATTCATACAATAAACAGTTGTCAACT-AAAA-ATTTC-T-CAAGTT----GTG-TATATACAAACCTTTATAGAATTTTAGACACA--AT--ACTTAAA--A--TAATAACTGGTATA-TAGTTG----------------CCTTACT---TTTTTCTTGTA-CAGAGGTTTTGCT-CTAGAT--ACTTTCA
gi|110235 : tccacatgttacagatttatactctgaaaaaacTGTTACCA-ATAACTGTTTGTTTTCTT-CCTGTTAAATAAGA-------CATTACG------T-T----A---A-CACCCA--TCAACT------------TTAG---TTTACT-ACA-TAAATT--ATGATG--ATTAATTGT--ACCATAGGCTTTTT-GTACATCTAAAATAACCATGCC---TGTATAA------------T-GGCACTATTGCTTCTTATGTGATCC-ATTAAGTGGACAAGGCAAGTATCAGTGCAATATAAA---TTC-CT---AAAACCTGACTGCAATTCATACAATTAAATGTTGTCAACT--AAG-AAGTTAT-CATGTTCTCGAGTGCATAAACTGGCCTTTCTAGAACTTTAGATACT--CT--ACTTAAA--A--TATTAACTGGTCTA-TAGTTGC--CTACCTC---A
gi|110236 : tccacatgtcacagattcatactctgaaaatacagCGTATGAAATGTTCATGAAATCCGACATTGTATTATTAACA-TTTATAGATTGT-TTATGATCAGACAAACAAGATTAAAACCACT-CAATCGA-T-TTTATC---A-CATTTA--T--GTT--------------AA---ATTACG-ACA-TTAATT--GCCACG--ATCAACTGTAAAT-AAAAGCCTTCT-GAAGGTCAAACATAA-CATTCT---TGTACAA-A--G--ACCTCT-TGCATTTTTACTTTTAATCTGGCCC-GTCAAATGA--AAGGCAGGAGACAGTGGAAT---A
gi|110237 : CGTATGAAATGTTCATGAAATCCGACATTGTATTATTAACA-TTTATAGATTGT-TTATGATCAGACAAACAAAAATGAAACCACT-CAATTGATC-T----C---A-C-CGCA--TTTATT------------TTAA---ATTACG-ACA-TTAAAT--ACCACG--ATCAACTGTAAAT-AAAAGTCTTTT-GAAGGTCAAATATAA-CATTCT---TGTACAA-A--G--ACCTCT-TGCgaaatatctaaagccactttaaagggtactgcatgtcagaatataaatggtcatttatcgttaaaaag
gi|110238 : ATTGTTAACA-CTAACTGTTTGTTGTCAT-CCTGTTAAATAAGCCATGAACCAAT-CAGT--A-T-T----TTA-A-CACCCA--TTAACT------------TAAG---TTTACC-ACA-TAAAAT--ATGGTG--ATCAACTGT--ATCA---GCTTTTT-GTAAATCTA--ACAACCATGCC---TGTATAA-A--G--CCCTTT-AGCACTATTGCTTCTAATATGGTTC-ATTAAGTGGATGAGGCAAGTATTAGTAGAAT---ATGAATTC-TT---AAAACATGACTGCAATTCATACAATAAATTGTTGTCAACT-AAGA-AGTTC-T-TAAATT----GAG-TATTTACAGACCTTTCTAGAATTTTTGACACA--AT--ACTCAAA--A--TACTAACTGGTCTT-TAGTT
gi|110239 : ATTGTTAACACTAA---CCTTGTTTTCTT-CCCGTTAAATAAGACATGAACCAAT-CAGT--A-T-T----TTGAA-CACCCA--TTGACT------------TTAA---TTTA---------AAAT--ATGATG--ATCAACTGT--ATCAAAGACTTTTTTGTAAATCTAACATAACCATGCC---TGTATAA-A--G--ACCTTT-------------------ATGGTCC-ATTAATTGGACAAGGCAAGTATTAGTAGGAT---ATGAATTC-CT---AAAATCTGACTGCAATTCATACAAAAAATTGTTCTCAACT-AAGA-AGTTC-T-CAAGTT----GAG-TATACATAGACCTTTCTAGAA-TTTAAGCATA--AT--ACTTAAA--A--TACTAACTGGTCTA-TAGTTGC--CTACCTC---AAAATAACTT---TTTTTTTTGTA-CAAAGGTTTTACT-CT-AAC-------TAAGATCA
gi|110240 : TTGTTAATA-TAAACACCTTGTATTTTA-CCTGACAAGTACGATTGAAACCATT-CGATTGA-C-T----CC--A-CACCCA--TCAGTT------------CTAA---CTTACG-ACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---AGTAAAT-A--G--GCCTTT-TGCCTTTCGATTTTTTATGTGATCT-GAGAGGTGAGTAAGGCAGGAGTCAGTCGAGT---AG---TTC-TCTCGGAATCCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGAT-T-CTAACT----GAT-TATGTACAGCTCTTTCTAGACTTTTAGCAACA--ATTGA--TAAA--A--TACTAACTGGTCTA-TAGTAAG--ATACATC---AGACCTATCA---TTCTTTTTAAA-CAAATGTTTTACT-TT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAATGGAA
gi|110241 : TTGTGTTTGA-TTGGACAAATACGATTTGAA--AA---GATTTA-A-T----G------TTCTA--TCAGTTAAATGATAAAGTTTCA---GTT-TGTACAGTAAGAT--TTCATG--ATCAACTAG--ATCAAATGCTTTTT-GTAGATCTAG
gi|110242 : TGTGATCTT-TCGGTTAGATAAGATTTGAACCAAT-TTATCGA-C-G----CG--A-CTCCCA--T---TT------------CAGAGAGCTTATT-ACA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCATTCC---GGTATAA-A--A--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAGTGGAGT---AT---TTA-CTCCTAAAACCGAACTGGAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCC-G-CAAATT----GGT-TATATACAGAACGCTCTAGAACTATTGATATACCAT--T--TAGT--A--TGCTAACTGGCCTA-TAATTA
gi|110243 : TGTGATCTT-TCGGTTAGATAAGATTTGAACCATT-TTATCGT-C-G----CG--A-CTCCCA--T---TT------------CAGAGAGCTTATT-ACA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCATTCC---GGTATAA-A--A--AACATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAGTGGAGT---AT---TTA-CTCCTAAAACCGGACTGGAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCC-G-CAAATT----GGT-TATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAAGTA--TGCTAACTGGCCTA-TAATTAC--CAACTTCCAAAGGACTA-CA---CTTTTTGTAAATC---GGGCTGACT-CT-TGC--AGTTTT
gi|110244 : TGTGATCTT-TCGGTTAGATAAGATTTGAACCAAT-TTATCGA-C-G----CG--A-CTCCCA--T---TT------------CAGAGAGCTTATT-ACA-TAGAAT--AAC-TA--GTCAACAGT--ATCAAACGCCTTCT-GTAGATCGAGTAAAACCATGCC---GGTATAA-A--G--ACCCTT--GCATCGTTATGTTTGATAAAATCA-AACAGGCGAATAAGACATGTATCAGTGGAGT---AT---TTA-CTCCTAAAACCGGACTGAAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCC-G-CAAATT----GGT-TATATACAGAACGCTCTAAAACTTTTGATACA--AC--A--TTAATTA--TGCTAACTGGCCTA-TAATTAC--CAACTTCCAAAGGACTA-CA---CTTTTTGTAAA-T--TGGGCTGACT-CT-TGC--AGTTTT
gi|110245 : TGTGATCTT-TCGGTTAGATAAGATTTGAACCATT-TTATCGA-C-G----CG--A-CTCCCA--T---TT------------CAGAGAGCTTATT-GCA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCAATCC---GGTATAA-A--A--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAGTGGAGT---AT---TTA-CTCCTAAAACCGGACTGGAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCC-G-CAAATT----GGT-TATAGACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAAGTA--TGCTAACTGGCCTA-TAATTA
gi|110246 : TGTGATCTT-TCGGTTAGATAAGATTTGAATCAAC-TTATCGA-C-G----CG--A-CTCCCA--T---TT------------CAGAGAGCTTATT-ACA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCATTCC---GGTATAA-A--G--ACTATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAGTGGAGT---AT---TTA-CTTCTAAAACAGGACTGGAACTCATACAGAAGAGAAATTTTAACC-AAAA-AAGTC-CGCAAATT----GGT-TATATACAGAACGCTCTAGAAGTTTAGATATA--AC--A--TTAAGTA--TGCTAACTGGTCTA-TGGTGGGGCATAAATT---AG
gi|110247 : TGTGATCTT-TCGGTTAGATAAGATTTGAACCAAT-TTATCGA-CGT----G---A-CTCCAA--T---TT------------CAGAGAGCTTA-----A-TAA-------TGTG--GTCAATGGT--ATCAAACGCCTTCT-GTAGATCATGTAAAACTATTCC---GGTATAA-A--G--ACCATT-TGCATTGTTATGTTTAAT-TAAACCAAAAAGGTGAATAAGACATGTATCAGTGGAGT---AT---TTC-CTCCTAAAACAAGACTGAAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCC-G-CCAATT----GGT-TATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAAGTA--TGCTTACTTGCCTA-TAATTA
gi|110248 : CAGATAAGACTGAAACCACT-CAACTGA-C-TT---C---A-CCCCGA--TTTCTT------------TTAA---TTTGTG-GAA-TAAAAT--CCCATG--TTCAACTGT--ATCAAAAGCCTTCT-GAAGGTCCGACATAATAATAC
gi|110249 : TAAGATTTGAACCAAT-GTATCGA-C-G----CG--A-CTCCCATTTCAG---------------AGA---GTTATT-ACA-TAGAAT--AACGTT--GTCAACGGT--ATCAAACGCCTTCT-GTAGATCTAGTAAAACCATTCC---GGTATAA-A--G--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAGTGGAGT---AT---TTA-CTCCTAAAACCGGACTGAAACTCATAAAGAAGAGAATTTTTATCT-AAAA-AATCT-G-CAAATT----GGT-TATATACAGAACGCTCTAGAACATTTGATATA--AC--A--TTAAGTA--TGCTAACTGGCCTA-TAATTA
gi|110250 : -ACA-TAAAATACGTAGTATTGTCAATTGT--ATCATAGGCTGTTT-GTAGGTCAAGCATGATCATACC---AGTGTAAGA--G--GCC-------------ATTT--AATGTAGTAA-GTTAAATGGACAAGGCACGAATCTGTAGAGA---AA---TTT-GTTCGATATCCTGACTGAAATTCATATTGTAATCTATTTTTAATT-AAAA-ATGTT-T-TAAGAT----GGT-TGTATACAACCCTTTCTAAAAGTTTGGAGACT--AT--A--CAAAGGA--TGCTAACTTGTCTA-TAGTTGC--CTACCCC---CAGTCTGACATATTTTTTCTTAAA-GAGGGGTTTGACTCTT-GATG-ACTTT--AGCTCA
gi|110251 : GTG--ATCTACAGT--ATCAAAAGCTTTTT-GTAGATCTAGCAGAATCATACC-----TACAA-C--ATTACCCTTATCCATATCCAGCCTT-ATATAATCT-GTCAAATGGATGAGACGCATGTCAGTTGAAA---AA---AACACTTGTGGACCCTGACTGAAATTTATATAACAATGTGTT-TTCTTT-GAAATAAGAT-T-CAACTT----GTT-CATAAACA-ATTTTTCAAATATCTTAGACACA--
gi|110252 : tTTCT-GTAGATCGAGTAAAACCATTCC---GGTATAA-A--G--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAATGGTGAATAAGACATGTATCAGTGGAGT---AT---TTA-CTCCTAAAACCGGACTGAAACTCATACAGAAGAGAATTTTTATCT--AAA-AATCC-G-CAAATT----GGT-TATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAA--GTCTGCTAACTGGCCTATTAGT
gi|110253 : tTCATATAGTAATCTACGTTTAATT-AAAA-GTGTT-T-CAAGTT----CAT-TGTATAAATCCTTTTCTAAAATTTTGGACACA--AT--A--CAAAGGA--TGCTAACCGACCGA-TAGTTGC--CCACTTC---AG-TATGACAC--TTTTTCTTAAA-TAAAGGTTTGACT-CT-TGCTGAC--TTAAGCTCATATGGCACATTTATT
Alignments
lowQualScore : 11 2222222222 3333333333333333 11111 22 111 111
lowQualScore : 1 1 55 333 0 11 55 1 1 1 1 1 2 4 1 8888888888 1 3 22 0000000000000000 1 99999999 1 77777 22 44 4 1 5 3 0 1 6666 3 22 22 4 1 0 2 1 2 3 2 66 1 1 0 1 1 66 1 3 2 1 2 22 2 1 1 1 66666 1 4444 1 33 1 2 1 1 22 99999 0 22 22 2 777 2 111 1 8 000 3 3 55 6
lowQualScore : . . .. ... . .. .. . . . . . . . . .......... . . .. ................ . ........ . ..... .. .. . . . . . . .... . .. .. . . . . . . . . .. . . . . . .. . . . . . .. . . . . ..... . .... . .. . . . . .. ..... . .. .. . ... . ... . . ... . . .. .
lowQualScore : 4 4 77 555 2 88 22 0 0 5 0 9 9 0 9 9999999999 9 5 66 1111111111111111 9 99999999 8 00000 44 88 7 7 0 2 6 9 6666 6 55 55 0 8 1 3 0 0 9 0 88 0 0 9 4 0 55 3 1 3 0 5 00 9 0 9 9 99999 9 0000 9 00 3 4 0 0 66 88888 1 00 88 0 888 1 777 7 1 000 6 6 55 7
consensus : TCCACGTACGATATTTTCA--AAGTCGGACATGGTATTGTTAACA-TAAACACCTTGTGTTCTN-CCNGNCAAATAAGATTTGAACCANT-CGATCGA-C-T----C---A-CNCCCA--TCAGTT------C---TA-GCTTACG------ACA-TAAAAT--GTCGTG--ATCAACTGT--ATCAAACGCCTTTT-GTAGATCGAGCATAACCATGCC---GGTATAA-A--G--ACCTTT-TGCATTNTTATTTTTAATGTGATCC-GANAGGTGAATAAGGCANGTGTCAGTGGAGTATTTA-CTCCTAAAACCGGACTGAAACTCATACAGNAGANNATTNTTANCT-AAAA-AANNCT-CA-AATT----GGT-TATATACAGANCTTTCTAGAACTTTNGANACA--AT--A--TAAA--A--TGCTAACTGGTCTA-TAGTTANNTACNTC---AGACCTANCA---TTTTTTTTAAA-CAAAGGTTTTACTCT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAATGGAA
Reference ( family-718 ) : TCCACGTACGATATTTTCA--AAGTCGGACATGGTATTGTTAACA-TAAACACCTTGTGTTCTN-CCNGNCAAATAAGATTTGAACCANT-CGATCGA-C-T----C---A-CNCCCA--TCAGTT------C---TA-ACTTACG------ACA-TAAAAT--GTCGTG--ATCAACTGT--ATCAAACGCCTTTT-GTAGATCGAGCATAACCATGCC---GGTATAA-A--G--ACCTTT-TGCATTNTTATTTTTAATGTGATCC-GANAGGTGAATAAGGCANGTGTCAGTGGAGTANTTC-CTCCTAAAACCGGACTGAAACTCATACAGNAGANNATTNTTANCT-AAAA-AAGNCT-CA-AATT----GGT-TATATACAGANCTTTCTAGAACTTTNGANACA--AT--A--TAAA--A--TGCTAACTGGTCTA-TAGTTANNTACNTC---AGACCTANCA---TTTTTTTTAAA-CAAAGGTTTTACTCT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAATGGAA
gi|110229 : TCCACATACAATATTTTCA--AAGTCGGACATGGTATTGTTAATA-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTGAAACCACT-CGATTGA-C-T----CC--A-CGCCCA--TCAGTT------C---TA-ACTTACG------ACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCCTATGACATCATA--G--GCCTTT-TGCCTTTTGATTTTTTATGTGATCT-GAGAGGTAAGTAAGGCAGGAGTCAGTCGAGTAGTTC-CCTCGGAATCCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGATT-CT-AACT----GAT-TATATACAGCTCTTTCTAGAATTTAAGAAACA--ATTGA--TAAA--A--TACTAACTGGTCTA-TAGTTAAA-ACATC---AGACCTATCA---TTCTTTTTAAA-CAAAGGTTTTACTTT-GGC--ACTTTTAAGATCACAAGGAAG-TTCATTACTTGTAATGGAA
gi|110230 : TCCACATACAATATTTTCA--AAGTCGGACACGGTATTGTTAATA-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTTAAACCACT-CGATTGA-C-T----C---A-CGCCCA--TCAGTT------C---TT-ACTTACG------ACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---A--ATAA-ATTG--GCCTTT-TGCCTTTTAATTTTTTATGTGATCT-GAGAGGTGAGTAAGGCAGGAGTCAGTCGAGTAGTTC-CCTCGGAATCCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGTTT-CT-AACT----GAT-TATATACAGCCCTTTCTAGAATTTTAGAAACA--ATTGA--TAAA--A--TACTAACTGGTCTA-TAGTTAGATACATC---AGACCTAATA---TTCTTTTTAAG-CAAAGGTTTTACTTT-GGC--ACTTTTAAGATTACACAGAAT-TTCATTACTATTTATCGAA
gi|110231 : TCCACATACAATATTTTCA--AAGTCGGATATGGTATTGTTAATA-TAAACGCATTGTGTTCTA-CCAGACAAATACGATTGAAACCACT-CGATTGA-C-T----CC--A-CGCCCA--TCAGTT------C---TA-ACTTACG------ACA-TAAAAT--GTTGCG--ATCACCTGT--GTCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---AGTAAAT-A--G--ACCTTC-TGCCTTTTGATTTTTTATGTGATCT-GAGAGGTAAGTAAGGCAGGAGTCAATCGAATAGTTC-CCTCGGAATCCACTCTGAAGATCATATAACATATTATTGTTAGTTAAAAA-AAGATT-CT-AACT----GAT-TATATACAGCTCTTTCTAGAATTTTAGAAACA--ATAGA--TAAA--A--TACTAACT-GTCTA-TAGCAAGATACATC---AGACCTATCA---TTGTTTTTAAA-CAAAGGTTTTACTTT-GGC--ACTTTTAAGATAAAATGGAAT-TTCATTACTAGTAATGGAA
gi|110232 : TCCACACACAATATTTTCA--AAGTCGGACATGGTATTGTTAATA-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTGAAACCACT-CGATTG-----------------CCCA--TCAGTT------C---TA-ACTTACG------ACA-TAAAGT--GTTGTG--ATCATCTGT--TTTAAATGCTTTTT-GTAGATCAAGAATAATCATGCC---AGCAAAT-A--G--GCCTTT-TGCCTTTTGATTTTTTATGTGATCT-GAGAGGTGAGTAAGGCAGGAGTCAGTCAAGTAGTTC-CCTCGGAATCCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAAGGT-TATAACT----GAT-TATATACAGCTCTTTCTAGAATTTTAGAAACA--ATTGA--TAAA--A--TACTAACTAGTCTA-TAGTTAGATACATA---AGACCTATCA---TTCTTTTTAAA-CAAAGGTTTTACTTT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAAT
gi|110233 : TCTACATACAATATTTTCA--AAGTCGGACATGGTATTGTTGATT-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTAAAACCACT-CGATTGA-C-T----CG--A-CGCCCA--TCAGTT------C---TA-ATTTATG------ACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---AGTAAAC-A--G--GCCTTT-TGCCTTTTGATTTTTTATGTGATCT-GAGAGTTGAGTAAGGTAGGAGTCAGTCGAGTAGGTC-CCTCGGAATCCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGGTT-CT-AAAT----GAT-TATATACAG-CCGTTTTAGAATTTTAAAAACA--ATTGA--TAAA--A--TACAAACTGGTCTA-TAGTTAGATACAT
gi|110234 : ATTGTTAGCA---ATGACTTTTTTTTCTT-CCTGCTAAATAACACATGAACCAAT-CAGTATA-T-T----T---AACACCCA--TTAACT------T---TA-GTTTACC------ACA-TAAAAT--AT---G--ATCAACTGT--TTCAAAGGCTTTTT-GTAAATCTAACATAACCATGCC---TGTATAA-A--G--TCCTTC-GGCACTATTGCTTCTAATATGGTAC-ATTAAGTGGGCAAAGCAAGTGTCAACAGAATATGAA-TTCCTAAAACCTGACAGCAATTCATACAATAAACAGTTGTCAACT-AAAA-ATTTCT-CA-AGTT----GTG-TATATACAAACCTTTATAGAATTTTAGACACA--AT--ACTTAAA--A--TAATAACTGGTATA-TAGTTG--------------CCTTACT---TTTTTCTTGTA-CAGAGGTTTTGCTCTAGAT--ACTTTCA
gi|110235 : tccacatgttacagatttatactctgaaaaaacTGTTACCA-ATAACTGTTTGTTTTCTT-CCTGTTAAATAAGA-------CATTACG------T-T----A---A-CACCCA--TCAACT------T---TA-GTTTACT------ACA-TAAATT--ATGATG--ATTAATTGT--ACCATAGGCTTTTT-GTACATCTAAAATAACCATGCC---TGTATAA------------T-GGCACTATTGCTTCTTATGTGATCC-ATTAAGTGGACAAGGCAAGTATCAGTGCAATATAAA-TTCCTAAAACCTGACTGCAATTCATACAATTAAATGTTGTCAACT-AAGA-AGTTAT-CA-TGTTCTCGAGTGCATAAACTGGCCTTTCTAGAACTTTAGATACT--CT--ACTTAAA--A--TATTAACTGGTCTA-TAGTTGCCTACCTC---A
gi|110236 : tccacatgtcacagattcatactctgaaaatacagCGTATGAAATGTTCATGAAATCCGACATTGTATTATTAACA-TTTATAGATTGT-TTATGATCAGACAAACAAGATTAAAACCACT-CAATCGA-T-TTTATC---A-CATTTA--T--GTT-----------A-AATTACG------ACA-TTAATT--GCCACG--ATCAACTGTAAAT-AAAAGCCTTCT-GAAGGTCAAACATAA-CATTCT---TGTACAA-A--G--ACCTCT-TGCATTTTTACTTTTAATCTGGCCC-GTCAAATGA--AAGGCAGGAGACAGTGGAATA
gi|110237 : CGTATGAAATGTTCATGAAATCCGACATTGTATTATTAACA-TTTATAGATTGT-TTATGATCAGACAAACAAAAATGAAACCACT-CAATTGATC-T----C---A-C-CGCA--TTTATT------T---TA-AATTACG------ACA-TTAAAT--ACCACG--ATCAACTGTAAAT-AAAAGTCTTTT-GAAGGTCAAATATAA-CATTCT---TGTACAA-A--G--ACCTCT-TGCgaaatatctaaagccactttaaagggtactgcatgtcagaatataaatggtcatttatcgttaaaaag
gi|110238 : ATTGTTAACA-CTAACTGTTTGTTGTCAT-CCTGTTAAATAAGCCATGAACCAAT-CAGT--A-T-T----TTA-A-CACCCA--TTAACT------T---AA-GTTTACC------ACA-TAAAAT--ATGGTG--ATCAACTGT--ATCA---GCTTTTT-GTAAATCTAACA--ACCATGCC---TGTATAA-A--G--CCCTTT-AGCACTATTGCTTCTAATATGGTTC-ATTAAGTGGATGAGGCAAGTATTAGTAGAATATGAA-TTCTTAAAACATGACTGCAATTCATACAATAAATTGTTGTCAACT-AAGA-AGTTCT-TA-AATT----GAG-TATTTACAGACCTTTCTAGAATTTTTGACACA--AT--ACTCAAA--A--TACTAACTGGTCTT-TAGTT
gi|110239 : ATTGTTAACACTAA---CCTTGTTTTCTT-CCCGTTAAATAAGACATGAACCAAT-CAGT--A-T-T----TTGAA-CACCCA--TTGACT------T---TA-ATTTA--------------AAAT--ATGATG--ATCAACTGT--ATCAAAGACTTTTTTGTAAATCTAACATAACCATGCC---TGTATAA-A--G--ACCTTT-------------------ATGGTCC-ATTAATTGGACAAGGCAAGTATTAGTAGGATATGAA-TTCCTAAAATCTGACTGCAATTCATACAAAAAATTGTTCTCAACT-AAGA-AGTTCT-CA-AGTT----GAG-TATACATAGACCTTTCTAGAA-TTTAAGCATA--AT--ACTTAAA--A--TACTAACTGGTCTA-TAGTTGCCTACCTC---AAAATAACTT---TTTTTTTTGTA-CAAAGGTTTTACTCT-AAC-------TAAGATCA
gi|110240 : TTGTTAATA-TAAACACCTTGTATTTTA-CCTGACAAGTACGATTGAAACCATT-CGATTGA-C-T----CC--A-CACCCA--TCAGTT------C---TA-ACTTACG------ACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---AGTAAAT-A--G--GCCTTT-TGCCTTTCGATTTTTTATGTGATCT-GAGAGGTGAGTAAGGCAGGAGTCAGTCGAGTAGTTC-TCTCGGAATCCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGATT-CT-AACT----GAT-TATGTACAGCTCTTTCTAGACTTTTAGCAACA--ATTGA--TAAA--A--TACTAACTGGTCTA-TAGTAAGATACATC---AGACCTATCA---TTCTTTTTAAA-CAAATGTTTTACTTT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAATGGAA
gi|110241 : TTGTGTTTGA-TTGGACAAATACGATTTGAA--AA---GATTTA-A-T----G------TTCTA--TCAGTTAAATGAT---AA-AGTTTCAGTTTGTACAGTAAGAT--TTCATG--ATCAACTAG--ATCAAATGCTTTTT-GTAGATCTAG
gi|110242 : TGTGATCTT-TCGGTTAGATAAGATTTGAACCAAT-TTATCGA-C-G----CG--A-CTCCCA--T---TT------CAGAGA-GCTTATT------ACA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCATTCC---GGTATAA-A--A--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAGTGGAGTATTTA-CTCCTAAAACCGAACTGGAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CA-AATT----GGT-TATATACAGAACGCTCTAGAACTATTGATATACCAT--T--TAGT--A--TGCTAACTGGCCTA-TAATTA
gi|110243 : TGTGATCTT-TCGGTTAGATAAGATTTGAACCATT-TTATCGT-C-G----CG--A-CTCCCA--T---TT------CAGAGA-GCTTATT------ACA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCATTCC---GGTATAA-A--A--AACATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAGTGGAGTATTTA-CTCCTAAAACCGGACTGGAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CA-AATT----GGT-TATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAAGTA--TGCTAACTGGCCTA-TAATTACCAACTTCCAAAGGACTA-CA---CTTTTTGTAAATC---GGGCTGACTCT-TGC--AGTTTT
gi|110244 : TGTGATCTT-TCGGTTAGATAAGATTTGAACCAAT-TTATCGA-C-G----CG--A-CTCCCA--T---TT------CAGAGA-GCTTATT------ACA-TAGAAT--AAC-TA--GTCAACAGT--ATCAAACGCCTTCT-GTAGATCGAGTAAAACCATGCC---GGTATAA-A--G--ACCCTT--GCATCGTTATGTTTGATAAAATCA-AACAGGCGAATAAGACATGTATCAGTGGAGTATTTA-CTCCTAAAACCGGACTGAAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CA-AATT----GGT-TATATACAGAACGCTCTAAAACTTTTGATACA--AC--A--TTAATTA--TGCTAACTGGCCTA-TAATTACCAACTTCCAAAGGACTA-CA---CTTTTTGTAAA-T--TGGGCTGACTCT-TGC--AGTTTT
gi|110245 : TGTGATCTT-TCGGTTAGATAAGATTTGAACCATT-TTATCGA-C-G----CG--A-CTCCCA--T---TT------CAGAGA-GCTTATT------GCA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCAATCC---GGTATAA-A--A--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAGTGGAGTATTTA-CTCCTAAAACCGGACTGGAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CA-AATT----GGT-TATAGACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAAGTA--TGCTAACTGGCCTA-TAATTA
gi|110246 : TGTGATCTT-TCGGTTAGATAAGATTTGAATCAAC-TTATCGA-C-G----CG--A-CTCCCA--T---TT------CAGAGA-GCTTATT------ACA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCATTCC---GGTATAA-A--G--ACTATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAGTGGAGTATTTA-CTTCTAAAACAGGACTGGAACTCATACAGAAGAGAAATTTTAACC-AAAA-AAGTCCGCA-AATT----GGT-TATATACAGAACGCTCTAGAAGTTTAGATATA--AC--A--TTAAGTA--TGCTAACTGGTCTA-TGGT
gi|110247 : TGTGATCTT-TCGGTTAGATAAGATTTGAACCAAT-TTATCGA-CGT----G---A-CTCCAA--T---TT------CAGAGA-GCTTA----------A-TAA-------TGTG--GTCAATGGT--ATCAAACGCCTTCT-GTAGATCATGTAAAACTATTCC---GGTATAA-A--G--ACCATT-TGCATTGTTATGTTTAAT-TAAACCAAAAAGGTGAATAAGACATGTATCAGTGGAGTATTTC-CTCCTAAAACAAGACTGAAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CC-AATT----GGT-TATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAAGTA--TGCTTACTTGCCTA-TAATTAggggcataaattag
gi|110248 : CAGATAAGACTGAAACCACT-CAACTGA-C-TT---C---A-CCCCGA--TTTCTT------T---TA-ATTTGTG------GAA-TAAAAT--CCCATG--TTCAACTGT--ATCAAAAGCCTTCT-GAAGGTCCGACATAATAATAC
gi|110249 : TAAGATTTGAACCAAT-GTATCGA-C-G----CG--A-CTCCCATTTCAG-------------AGAGTTATT------ACA-TAGAAT--AACGTT--GTCAACGGT--ATCAAACGCCTTCT-GTAGATCTAGTAAAACCATTCC---GGTATAA-A--G--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAGTGGAGTATTTA-CTCCTAAAACCGGACTGAAACTCATAAAGAAGAGAATTTTTATCT-AAAA-AA-TCTGCA-AATT----GGT-TATATACAGAACGCTCTAGAACATTTGATATA--AC--A--TTAAGTA--TGCTAACTGGCCTA-TAATTA
gi|110250 : ------ACA-TAAAATACGTAGTATTGTCAATTGT--ATCATAGGCTGTTT-GTAGGTCAAGCATGATCATACC---AGTGTAAGA--G--GCC-------------ATTT--AATGTAGTAA-GTTAAATGGACAAGGCACGAATCTGTAGAGAAATTT-GTTCGATATCCTGACTGAAATTCATATTGTAATCTATTTTTAATT-AAAA-ATGTTT-TA-AGAT----GGT-TGTATACAACCCTTTCTAAAAGTTTGGAGACT--AT--A--CAAAGGA--TGCTAACTTGTCTA-TAGTTGCCTACCCC---CAGTCTGACATATTTTTTCTTAAA-GAGGGGTTTGACTCT-
gi|110251 : GTG--ATCTACAGT--ATCAAAAGCTTTTT-GTAGATCTAGCAGAATCATACC-----TACAA-C--ATTACCCTTATCCATATCCAGCCTT-ATATAATCT-GTCAAATGGATGAGACGCATGTCAGTTGAAAAAAACACTTGTGGACCCTGACTGAAATTTATATAACAATGTGTT-TTCTTT-GAAATAAGATT-CA-ACTT----GTT-CATAAACA-ATTTTTCAAATATCTTAGACACA--tgatgactttagctca
gi|110252 : tTTCT-GTAGATCGAGTAAAACCATTCC---GGTATAA-A--G--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAATGGTGAATAAGACATGTATCAGTGGAGTATTTA-CTCCTAAAACCGGACTGAAACTCATACAGAAGAGAATTTTTATCT--AAA-AATCCG-CA-AATT----GGT-TATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAA--GTCTGCTAACTGGCCTATTAGT
gi|110253 : tTCATATAGTAATCTACGTTTAATT-AAAA-GTGTTT-CA-AGTT----CAT-TGTATAAATCCTTTTCTAAAATTTTGGACACA--AT--A--CAAAGGA--TGCTAACCGACCGA-TAGTTGCCCACTTC---AG-TATGACAC--TTTTTCTTAAA-TAAAGGTTTGACTCT-TGCTGAC--TTAAGCTCATATGGCACATTTATT
Alignments
lowQualScore : 11 2222222222 22222222222222 11111 22 111 111
lowQualScore : 1 1 55 333 0 11 55 1 1 1 44444 1 333 3 1 7777777777 1 3 22 99999999999999 1 77 1 77777 22 44 4 1 5 3 0 1 6666 3 22 22 4 1 0 2 1 2 3 2 66 1 1 0 1 0 1 1 2 3 2 1 2 22 2 1 1 1 22222 1 4444 1 33 1 2 1 1 22 99999 0 22 22 2 777 2 111 1 8 000 3 3 55 6
lowQualScore : . . .. ... . .. .. . . . ..... . ... . . .......... . . .. .............. . .. . ..... .. .. . . . . . . .... . .. .. . . . . . . . . .. . . . . . . . . . . . . .. . . . . ..... . .... . .. . . . . .. ..... . .. .. . ... . ... . . ... . . .. .
lowQualScore : 4 4 77 555 2 88 22 0 0 5 88888 0 000 2 9 7777777777 9 5 66 44444444444444 9 11 8 00000 44 88 7 7 0 2 6 9 6666 6 55 55 0 8 1 3 0 0 9 0 88 0 0 9 9 2 9 4 0 1 3 0 5 00 9 0 9 9 99999 9 0000 9 00 3 4 0 0 66 88888 1 00 88 0 888 1 777 7 1 000 6 6 55 7
consensus : TCCACGTACGATATTTTCA--AAGTCGGACATGGTATTGTTAACA-TAAACACCTTGTGTTCTN-CCNGNCAAATAAGATTTGAA-----CCANT-CGATCGA-C-T----C---A-CNCCCA--TCA----GTTC---TAG-CTTACGACA-TAAAAT--GTCGTG--ATCAACTGT--ATCAAACGCCTTTT-GTAGATCGAGCATAACCATGCC---GGTATAA-A--G--ACCTTT-TGCATTNTTATTTTTAATGTGATCC-GANAGGTGAATAAGGCANGTGTCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGAAACTCATACAGNAGANNATTNTTANCT-AAAA-AANNCT-CA-AATT----GGT-TATATACAGANCTTTCTAGAACTTTNGANACA--AT--A--TAAA--A--TGCTAACTGGTCTA-TAGTTANNTACNTC---AGACCTANCA---TTTTTTTTAAA-CAAAGGTTTTACTCT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAATGGAA
Reference ( family-718 ) : TCCACGTACGATATTTTCA--AAGTCGGACATGGTATTGTTAACA-TAAACACCTTGTGTTCTN-CCNGNCAAATAAGATTTGAA-----CCANT-CGATCGA-C-T----C---A-CNCCCA--TCA----GTTC---TAG-CTTACGACA-TAAAAT--GTCGTG--ATCAACTGT--ATCAAACGCCTTTT-GTAGATCGAGCATAACCATGCC---GGTATAA-A--G--ACCTTT-TGCATTNTTATTTTTAATGTGATCC-GANAGGTGAATAAGGCANGTGTCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGAAACTCATACAGNAGANNATTNTTANCT-AAAA-AANNCT-CA-AATT----GGT-TATATACAGANCTTTCTAGAACTTTNGANACA--AT--A--TAAA--A--TGCTAACTGGTCTA-TAGTTANNTACNTC---AGACCTANCA---TTTTTTTTAAA-CAAAGGTTTTACTCT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAATGGAA
gi|110229 : TCCACATACAATATTTTCA--AAGTCGGACATGGTATTGTTAATA-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTGAAA-----CCACT-CGATTGA-C-T----CC--A-CGCCCA--TCA----GTTC---TAA-CTTACGACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCCTATGACATCATA--G--GCCTTT-TGCCTTTTGATTTTTTATGTGATCT-GAGAGGTAAGTAAGGCAGGAGTCAG-TCGAG-TAGTTCCCTCGGAAT-CCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGATT-CT-AACT----GAT-TATATACAGCTCTTTCTAGAATTTAAGAAACA--ATTGA--TAAA--A--TACTAACTGGTCTA-TAGTTAAA-ACATC---AGACCTATCA---TTCTTTTTAAA-CAAAGGTTTTACTTT-GGC--ACTTTTAAGATCACAAGGAAG-TTCATTACTTGTAATGGAA
gi|110230 : TCCACATACAATATTTTCA--AAGTCGGACACGGTATTGTTAATA-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTTAAA-----CCACT-CGATTGA-C-T----C---A-CGCCCA--TCA----GTTC---TTA-CTTACGACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---A--ATAA-ATTG--GCCTTT-TGCCTTTTAATTTTTTATGTGATCT-GAGAGGTGAGTAAGGCAGGAGTCAG-TCGAG-TAGTTCCCTCGGAAT-CCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGTTT-CT-AACT----GAT-TATATACAGCCCTTTCTAGAATTTTAGAAACA--ATTGA--TAAA--A--TACTAACTGGTCTA-TAGTTAGATACATC---AGACCTAATA---TTCTTTTTAAG-CAAAGGTTTTACTTT-GGC--ACTTTTAAGATTACACAGAAT-TTCATTACTATTTATCGAA
gi|110231 : TCCACATACAATATTTTCA--AAGTCGGATATGGTATTGTTAATA-TAAACGCATTGTGTTCTA-CCAGACAAATACGATTGAAA-----CCACT-CGATTGA-C-T----CC--A-CGCCCA--TCA----GTTC---TAA-CTTACGACA-TAAAAT--GTTGCG--ATCACCTGT--GTCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---AGTAAAT-A--G--ACCTTC-TGCCTTTTGATTTTTTATGTGATCT-GAGAGGTAAGTAAGGCAGGAGTCAA-TCGAA-TAGTTCCCTCGGAAT-CCACTCTGAAGATCATATAACATATTATTGTTAGTTAAAAA-AAGATT-CT-AACT----GAT-TATATACAGCTCTTTCTAGAATTTTAGAAACA--ATAGA--TAAA--A--TACTAACT-GTCTA-TAGCAAGATACATC---AGACCTATCA---TTGTTTTTAAA-CAAAGGTTTTACTTT-GGC--ACTTTTAAGATAAAATGGAAT-TTCATTACTAGTAATGGAA
gi|110232 : TCCACACACAATATTTTCA--AAGTCGGACATGGTATTGTTAATA-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTGAAA-----CCACT-CGATTG-----------------CCCA--TCA----GTTC---TAA-CTTACGACA-TAAAGT--GTTGTG--ATCATCTGT--TTTAAATGCTTTTT-GTAGATCAAGAATAATCATGCC---AGCAAAT-A--G--GCCTTT-TGCCTTTTGATTTTTTATGTGATCT-GAGAGGTGAGTAAGGCAGGAGTCAG-TCAAG-TAGTTCCCTCGGAAT-CCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAAGGT-TATAACT----GAT-TATATACAGCTCTTTCTAGAATTTTAGAAACA--ATTGA--TAAA--A--TACTAACTAGTCTA-TAGTTAGATACATA---AGACCTATCA---TTCTTTTTAAA-CAAAGGTTTTACTTT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAAT
gi|110233 : TCTACATACAATATTTTCA--AAGTCGGACATGGTATTGTTGATT-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTAAAA-----CCACT-CGATTGA-C-T----CG--A-CGCCCA--TCA----GTTC---TAA-TTTATGACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---AGTAAAC-A--G--GCCTTT-TGCCTTTTGATTTTTTATGTGATCT-GAGAGTTGAGTAAGGTAGGAGTCAG-TCGAG-TAGGTCCCTCGGAAT-CCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGGTT-CT-AAAT----GAT-TATATACAG-CCGTTTTAGAATTTTAAAAACA--ATTGA--TAAA--A--TACAAACTGGTCTA-TAGTTAGATACAT
gi|110234 : ATTGTTAGCA---ATGACTTTTTTTTCTT-CCTGCTAAATAACACATGAA-----CCAAT-CAGTATA-T-T----T---AACACCCA--TTA----ACTT---TAG-TTTACCACA-TAAAAT--AT---G--ATCAACTGT--TTCAAAGGCTTTTT-GTAAATCTAACATAACCATGCC---TGTATAA-A--G--TCCTTC-GGCACTATTGCTTCTAATATGGTAC-ATTAAGTGGGCAAAGCAAGTGTCAA-CAGAA-TATGAATTCCTAAAA-CCTGACAGCAATTCATACAATAAACAGTTGTCAACT-AAAA-ATTTCT-CA-AGTT----GTG-TATATACAAACCTTTATAGAATTTTAGACACA--AT--ACTTAAA--A--TAATAACTGGTATA-TAGTTG--------------CCTTACT---TTTTTCTTGTA-CAGAGGTTTTGCTCTAGAT--ACTTTCA
gi|110235 : tccacatgttacagatttatactctgaaaaaacTGTTACCA-ATAACTGTTTGTTTTCTT-CCTGTTAAATAAGA------------CATTACG------T-T----A---A-CACCCA--TCA----ACTT---TAG-TTTACTACA-TAAATT--ATGATG--ATTAATTGT--ACCATAGGCTTTTT-GTACATCTAAAATAACCATGCC---TGTATAA------------T-GGCACTATTGCTTCTTATGTGATCC-ATTAAGTGGACAAGGCAAGTATCAG-TGCAA-TATAAATTCCTAAAA-CCTGACTGCAATTCATACAATTAAATGTTGTCAACT-AAGA-AGTTAT-CA-TGTTCTCGAGTGCATAAACTGGCCTTTCTAGAACTTTAGATACT--CT--ACTTAAA--A--TATTAACTGGTCTA-TAGTTGCCTACCTC---A
gi|110236 : tccacatgtcacagattcatactctgaaaatacagCGTATGAAATGTTCATGAAATCCGACATTGTATTATTAACA-TTTATAGATTGT-TTATGATCAGACAAACAAGATTAAAA-----CCACT-CAATCGA-T-TTTATC---A-CATTTA--T------GTT-----AA-ATTACGACA-TTAATT--GCCACG--ATCAACTGTAAAT-AAAAGCCTTCT-GAAGGTCAAACATAA-CATTCT---TGTACAA-A--G--ACCTCT-TGCATTTTTACTTTTAATCTGGCCC-GTCAAATGA--AAGGCAGGAGACAG-TGGAA-TA
gi|110237 : CGTATGAAATGTTCATGAAATCCGACATTGTATTATTAACA-TTTATAGATTGT-TTATGATCAGACAAACAAAAATGAAA-----CCACT-CAATTGATC-T----C---A-C-CGCA--TTT----ATTT---TAA-ATTACGACA-TTAAAT--ACCACG--ATCAACTGTAAAT-AAAAGTCTTTT-GAAGGTCAAATATAA-CATTCT---TGTACAA-A--G--ACCTCT-TGCgaaatatctaaagccactttaaagggtactgcatgtcagaatataaatggtcatttatcgttaaaaag
gi|110238 : ATTGTTAACA-CTAACTGTTTGTTGTCAT-CCTGTTAAATAAGCCATGAA-----CCAAT-CAGT--A-T-T----TTA-A-CACCCA--TTA----ACTT---AAG-TTTACCACA-TAAAAT--ATGGTG--ATCAACTGT--ATCA---GCTTTTT-GTAAATCTAACA--ACCATGCC---TGTATAA-A--G--CCCTTT-AGCACTATTGCTTCTAATATGGTTC-ATTAAGTGGATGAGGCAAGTATTAG-TAGAA-TATGAATTCTTAAAA-CATGACTGCAATTCATACAATAAATTGTTGTCAACT-AAGA-AGTTCT-TA-AATT----GAG-TATTTACAGACCTTTCTAGAATTTTTGACACA--AT--ACTCAAA--A--TACTAACTGGTCTT-TAGTT
gi|110239 : ATTGTTAACACTAA---CCTTGTTTTCTT-CCCGTTAAATAAGACATGAA-----CCAAT-CAGT--A-T-T----TTGAA-CACCCA--TTG----ACTT---TAA-TTTA--------AAAT--ATGATG--ATCAACTGT--ATCAAAGACTTTTTTGTAAATCTAACATAACCATGCC---TGTATAA-A--G--ACCTTT-------------------ATGGTCC-ATTAATTGGACAAGGCAAGTATTAG-TAGGA-TATGAATTCCTAAAA-TCTGACTGCAATTCATACAAAAAATTGTTCTCAACT-AAGA-AGTTCT-CA-AGTT----GAG-TATACATAGACCTTTCTAGAA-TTTAAGCATA--AT--ACTTAAA--A--TACTAACTGGTCTA-TAGTTGCCTACCTC---AAAATAACTT---TTTTTTTTGTA-CAAAGGTTTTACTCT-AAC-------TAAGATCA
gi|110240 : TTGTTAATA-TAAACACCTTGTATTTTA-CCTGACAAGTACGATTGAAA-----CCATT-CGATTGA-C-T----CC--A-CACCCA--TCA----GTTC---TAA-CTTACGACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---AGTAAAT-A--G--GCCTTT-TGCCTTTCGATTTTTTATGTGATCT-GAGAGGTGAGTAAGGCAGGAGTCAG-TCGAG-TAGTT-CTCTCGGAATCCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGATT-CT-AACT----GAT-TATGTACAGCTCTTTCTAGACTTTTAGCAACA--ATTGA--TAAA--A--TACTAACTGGTCTA-TAGTAAGATACATC---AGACCTATCA---TTCTTTTTAAA-CAAATGTTTTACTTT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAATGGAA
gi|110241 : TTGTGTTTGA-TTGGACAAATACGATTTGAAAAGATTTAAT--GTTCTA---T----C---A-GTTAAA--TGATAAAGTTT---CAG-TTTGT-ACAGTAAGAT--TTCATG--ATCAACTAG--ATCAAATGCTTTTT-GTAGATCTAG
gi|110242 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----CCAAT-TTATCGA-C-G----CG--A-CTCCCA--T-------TTCAGAGAG-CTTATTACA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCATTCC---GGTATAA-A--A--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGAACTGGAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CA-AATT----GGT-TATATACAGAACGCTCTAGAACTATTGATATACCAT--T--TAGT--A--TGCTAACTGGCCTA-TAATTA
gi|110243 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----CCATT-TTATCGT-C-G----CG--A-CTCCCA--T-------TTCAGAGAG-CTTATTACA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCATTCC---GGTATAA-A--A--AACATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGGAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CA-AATT----GGT-TATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAAGTA--TGCTAACTGGCCTA-TAATTACCAACTTCCAAAGGACTA-CA---CTTTTTGTAAATC---GGGCTGACTCT-TGC--AGTTTT
gi|110244 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----CCAAT-TTATCGA-C-G----CG--A-CTCCCA--T-------TTCAGAGAG-CTTATTACA-TAGAAT--AAC-TA--GTCAACAGT--ATCAAACGCCTTCT-GTAGATCGAGTAAAACCATGCC---GGTATAA-A--G--ACCCTT--GCATCGTTATGTTTGATAAAATCA-AACAGGCGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGAAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CA-AATT----GGT-TATATACAGAACGCTCTAAAACTTTTGATACA--AC--A--TTAATTA--TGCTAACTGGCCTA-TAATTACCAACTTCCAAAGGACTA-CA---CTTTTTGTAAA-T--TGGGCTGACTCT-TGC--AGTTTT
gi|110245 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----CCATT-TTATCGA-C-G----CG--A-CTCCCA--T-------TTCAGAGAG-CTTATTGCA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCAATCC---GGTATAA-A--A--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGGAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CA-AATT----GGT-TATAGACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAAGTA--TGCTAACTGGCCTA-TAATTA
gi|110246 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----TCAAC-TTATCGA-C-G----CG--A-CTCCCA--T-------TTCAGAGAG-CTTATTACA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCATTCC---GGTATAA-A--G--ACTATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTTCTAAAA-CAGGACTGGAACTCATACAGAAGAGAAATTTTAACC-AAAA-AAGTCCGCA-AATT----GGT-TATATACAGAACGCTCTAGAAGTTTAGATATA--AC--A--TTAAGTA--TGCTAACTGGTCTA-TGGT
gi|110247 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----CCAAT-TTATCGA-CGT----G---A-CTCCAA--T-------TTCAGAGAG-CTTA----A-TAA-------TGTG--GTCAATGGT--ATCAAACGCCTTCT-GTAGATCATGTAAAACTATTCC---GGTATAA-A--G--ACCATT-TGCATTGTTATGTTTAAT-TAAACCAAAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTCCTCCTAAAA-CAAGACTGAAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CC-AATT----GGT-TATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAAGTA--TGCTTACTTGCCTA-TAATTAggggcataaattag
gi|110248 : CAGATAAGACTGAAA-----CCACT-CAACTGA-C-TT---C---A-CCCCGA--TTT----CTTT---TAA-TTTGTGGAA-TAAAAT--CCCATG--TTCAACTGT--ATCAAAAGCCTTCT-GAAGGTCCGACATAATAATAC
gi|110249 : TAAGATTTGAA-----CCAAT-GTATCGA-C-G----CG--A-CTCCCATTTCA----G-------AGAGTTATTACA-TAGAAT--AACGTT--GTCAACGGT--ATCAAACGCCTTCT-GTAGATCTAGTAAAACCATTCC---GGTATAA-A--G--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGAAACTCATAAAGAAGAGAATTTTTATCT-AAAA-AATCTG-CA-AATT----GGT-TATATACAGAACGCTCTAGAACATTTGATATA--AC--A--TTAAGTA--TGCTAACTGGCCTA-TAATTA
gi|110250 : ACA-TAAAATACGTAGTATTGTCAATTGT--ATCATAGGCTGTTT-GTAGGTCAAGCATGATCATACC---AGTGTAAGA--G--GCC-------------ATTT--AATGTAGTAA-GTTAAATGGACAAGGCACGAATCTG-TAGAGAAATTTG-TTCGATAT-CCTGACTGAAATTCATATTGTAATCTATTTTTAATT-AAAA-ATGTTT-TA-AGAT----GGT-TGTATACAACCCTTTCTAAAAGTTTGGAGACT--AT--A--CAAAGGA--TGCTAACTTGTCTA-TAGTTGCCTACCCC---CAGTCTGACATATTTTTTCTTAAA-GAGGGGTTTGACTCT-
gi|110251 : GTG--ATCTACAGT--ATCAAAAGCTTTTT-GTAGATCTAGCAGAATCATACC-----TACAA-C--ATTACCCTTATCCATATCCAGCCTT-ATATAATCT-GTCAAATGGATGAGACGCATGTCAGTTGAAA-AAAACACTTGTGGAC-CCTGACTGAAATTTATATAACAATGTGTT-TTCTTT-GAAATAAGATT-CA-ACTT----GTT-CATAAACA-ATTTTTCAAATATCTTAGACACA--tgatgactttagctca
gi|110252 : tTTCT-GTAGATCGAGTAAAACCATTCC---GGTATAA-A--G--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAATGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGAAACTCATACAGAAGAGAATTTTTATCT--AAA-AATCCG-CA-AATT----GGT-TATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAA--GTCTGCTAACTGGCCTATTAGT
gi|110253 : tTCATATAGTAATCTACGTTTAATT-AAAA-GTGTTT-CA-AGTT----CAT-TGTATAAATCCTTTTCTAAAATTTTGGACACA--AT--A--CAAAGGA--TGCTAACCGACCGA-TAGTTGCCCACTTC---AG-TATGACAC--TTTTTCTTAAA-TAAAGGTTTGACTCT-TGCTGAC--TTAAGCTCATATGGCACATTTATT
Alignments
lowQualScore : 11 2222222222 22222222222222 11111 22 111 111
lowQualScore : 1 1 55 333 0 11 55 1 1 1 44444 1 333 3 1 7777777777 1 3 22 99999999999999 1 77 1 77777 22 44 4 1 5 3 0 1 6666 3 22 22 4 1 0 2 1 2 3 2 66 1 1 0 1 0 1 1 2 3 2 1 2 22 2 1 1 1 22222 1 4444 1 33 1 2 1 1 22 99999 0 22 22 2 777 2 111 1 8 000 3 3 55 6
lowQualScore : . . .. ... . .. .. . . . ..... . ... . . .......... . . .. .............. . .. . ..... .. .. . . . . . . .... . .. .. . . . . . . . . .. . . . . . . . . . . . . .. . . . . ..... . .... . .. . . . . .. ..... . .. .. . ... . ... . . ... . . .. .
lowQualScore : 4 4 77 555 2 88 22 0 0 5 88888 0 000 2 9 7777777777 9 5 66 44444444444444 9 11 8 00000 44 88 7 7 0 2 6 9 6666 6 55 55 0 8 1 3 0 0 9 0 88 0 0 9 9 2 9 4 0 1 3 0 5 00 9 0 9 9 99999 9 0000 9 00 3 4 0 0 66 88888 1 00 88 0 888 1 777 7 1 000 6 6 55 7
consensus : TCCACGTACGATATTTTCA--AAGTCGGACATGGTATTGTTAACA-TAAACACCTTGTGTTCTN-CCNGNCAAATAAGATTTGAA-----CCANT-CGATCGA-C-T----C---A-CNCCCA--TCA----GTTC---TAG-CTTACGACA-TAAAAT--GTCGTG--ATCAACTGT--ATCAAACGCCTTTT-GTAGATCGAGCATAACCATGCC---GGTATAA-A--G--ACCTTT-TGCATTNTTATTTTTAATGTGATCC-GANAGGTGAATAAGGCANGTGTCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGAAACTCATACAGNAGANNATTNTTANCT-AAAA-AANNCT-CA-AATT----GGT-TATATACAGANCTTTCTAGAACTTTNGANACA--AT--A--TAAA--A--TGCTAACTGGTCTA-TAGTTANNTACNTC---AGACCTANCA---TTTTTTTTAAA-CAAAGGTTTTACTCT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAATGGAA
Reference ( family-718 ) : TCCACGTACGATATTTTCA--AAGTCGGACATGGTATTGTTAACA-TAAACACCTTGTGTTCTN-CCNGNCAAATAAGATTTGAA-----CCANT-CGATCGA-C-T----C---A-CNCCCA--TCA----GTTC---TAG-CTTACGACA-TAAAAT--GTCGTG--ATCAACTGT--ATCAAACGCCTTTT-GTAGATCGAGCATAACCATGCC---GGTATAA-A--G--ACCTTT-TGCATTNTTATTTTTAATGTGATCC-GANAGGTGAATAAGGCANGTGTCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGAAACTCATACAGNAGANNATTNTTANCT-AAAA-AANNCT-CA-AATT----GGT-TATATACAGANCTTTCTAGAACTTTNGANACA--AT--A--TAAA--A--TGCTAACTGGTCTA-TAGTTANNTACNTC---AGACCTANCA---TTTTTTTTAAA-CAAAGGTTTTACTCT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAATGGAA
gi|110229 : TCCACATACAATATTTTCA--AAGTCGGACATGGTATTGTTAATA-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTGAAA-----CCACT-CGATTGA-C-T----CC--A-CGCCCA--TCA----GTTC---TAA-CTTACGACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCCTATGACATCATA--G--GCCTTT-TGCCTTTTGATTTTTTATGTGATCT-GAGAGGTAAGTAAGGCAGGAGTCAG-TCGAG-TAGTTCCCTCGGAAT-CCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGATT-CT-AACT----GAT-TATATACAGCTCTTTCTAGAATTTAAGAAACA--ATTGA--TAAA--A--TACTAACTGGTCTA-TAGTTAAA-ACATC---AGACCTATCA---TTCTTTTTAAA-CAAAGGTTTTACTTT-GGC--ACTTTTAAGATCACAAGGAAG-TTCATTACTTGTAATGGAA
gi|110230 : TCCACATACAATATTTTCA--AAGTCGGACACGGTATTGTTAATA-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTTAAA-----CCACT-CGATTGA-C-T----C---A-CGCCCA--TCA----GTTC---TTA-CTTACGACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---A--ATAA-ATTG--GCCTTT-TGCCTTTTAATTTTTTATGTGATCT-GAGAGGTGAGTAAGGCAGGAGTCAG-TCGAG-TAGTTCCCTCGGAAT-CCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGTTT-CT-AACT----GAT-TATATACAGCCCTTTCTAGAATTTTAGAAACA--ATTGA--TAAA--A--TACTAACTGGTCTA-TAGTTAGATACATC---AGACCTAATA---TTCTTTTTAAG-CAAAGGTTTTACTTT-GGC--ACTTTTAAGATTACACAGAAT-TTCATTACTATTTATCGAA
gi|110231 : TCCACATACAATATTTTCA--AAGTCGGATATGGTATTGTTAATA-TAAACGCATTGTGTTCTA-CCAGACAAATACGATTGAAA-----CCACT-CGATTGA-C-T----CC--A-CGCCCA--TCA----GTTC---TAA-CTTACGACA-TAAAAT--GTTGCG--ATCACCTGT--GTCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---AGTAAAT-A--G--ACCTTC-TGCCTTTTGATTTTTTATGTGATCT-GAGAGGTAAGTAAGGCAGGAGTCAA-TCGAA-TAGTTCCCTCGGAAT-CCACTCTGAAGATCATATAACATATTATTGTTAGTTAAAAA-AAGATT-CT-AACT----GAT-TATATACAGCTCTTTCTAGAATTTTAGAAACA--ATAGA--TAAA--A--TACTAACT-GTCTA-TAGCAAGATACATC---AGACCTATCA---TTGTTTTTAAA-CAAAGGTTTTACTTT-GGC--ACTTTTAAGATAAAATGGAAT-TTCATTACTAGTAATGGAA
gi|110232 : TCCACACACAATATTTTCA--AAGTCGGACATGGTATTGTTAATA-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTGAAA-----CCACT-CGATTG-----------------CCCA--TCA----GTTC---TAA-CTTACGACA-TAAAGT--GTTGTG--ATCATCTGT--TTTAAATGCTTTTT-GTAGATCAAGAATAATCATGCC---AGCAAAT-A--G--GCCTTT-TGCCTTTTGATTTTTTATGTGATCT-GAGAGGTGAGTAAGGCAGGAGTCAG-TCAAG-TAGTTCCCTCGGAAT-CCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAAGGT-TATAACT----GAT-TATATACAGCTCTTTCTAGAATTTTAGAAACA--ATTGA--TAAA--A--TACTAACTAGTCTA-TAGTTAGATACATA---AGACCTATCA---TTCTTTTTAAA-CAAAGGTTTTACTTT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAAT
gi|110233 : TCTACATACAATATTTTCA--AAGTCGGACATGGTATTGTTGATT-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTAAAA-----CCACT-CGATTGA-C-T----CG--A-CGCCCA--TCA----GTTC---TAA-TTTATGACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---AGTAAAC-A--G--GCCTTT-TGCCTTTTGATTTTTTATGTGATCT-GAGAGTTGAGTAAGGTAGGAGTCAG-TCGAG-TAGGTCCCTCGGAAT-CCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGGTT-CT-AAAT----GAT-TATATACAG-CCGTTTTAGAATTTTAAAAACA--ATTGA--TAAA--A--TACAAACTGGTCTA-TAGTTAGATACAT
gi|110234 : ATTGTTAGCA---ATGACTTTTTTTTCTT-CCTGCTAAATAACACATGAA-----CCAAT-CAGTATA-T-T----T---AACACCCA--TTA----ACTT---TAG-TTTACCACA-TAAAAT--AT---G--ATCAACTGT--TTCAAAGGCTTTTT-GTAAATCTAACATAACCATGCC---TGTATAA-A--G--TCCTTC-GGCACTATTGCTTCTAATATGGTAC-ATTAAGTGGGCAAAGCAAGTGTCAA-CAGAA-TATGAATTCCTAAAA-CCTGACAGCAATTCATACAATAAACAGTTGTCAACT-AAAA-ATTTCT-CA-AGTT----GTG-TATATACAAACCTTTATAGAATTTTAGACACA--AT--ACTTAAA--A--TAATAACTGGTATA-TAGTTG--------------CCTTACT---TTTTTCTTGTA-CAGAGGTTTTGCTCTAGAT--ACTTTCA
gi|110235 : tccacatgttacagatttatactctgaaaaaacTGTTACCA-ATAACTGTTTGTTTTCTT-CCTGTTAAATAAGA------------CATTACG------T-T----A---A-CACCCA--TCA----ACTT---TAG-TTTACTACA-TAAATT--ATGATG--ATTAATTGT--ACCATAGGCTTTTT-GTACATCTAAAATAACCATGCC---TGTATAA------------T-GGCACTATTGCTTCTTATGTGATCC-ATTAAGTGGACAAGGCAAGTATCAG-TGCAA-TATAAATTCCTAAAA-CCTGACTGCAATTCATACAATTAAATGTTGTCAACT-AAGA-AGTTAT-CA-TGTTCTCGAGTGCATAAACTGGCCTTTCTAGAACTTTAGATACT--CT--ACTTAAA--A--TATTAACTGGTCTA-TAGTTGCCTACCTC---A
gi|110236 : tccacatgtcacagattcatactctgaaaatacagCGTATGAAATGTTCATGAAATCCGACATTGTATTATTAACA-TTTATAGATTGT-TTATGATCAGACAAACAAGATTAAAA-----CCACT-CAATCGA-T-TTTATC---A-CATTTA--T------GTT-----AA-ATTACGACA-TTAATT--GCCACG--ATCAACTGTAAAT-AAAAGCCTTCT-GAAGGTCAAACATAA-CATTCT---TGTACAA-A--G--ACCTCT-TGCATTTTTACTTTTAATCTGGCCC-GTCAAATGA--AAGGCAGGAGACAG-TGGAA-TA
gi|110237 : CGTATGAAATGTTCATGAAATCCGACATTGTATTATTAACA-TTTATAGATTGT-TTATGATCAGACAAACAAAAATGAAA-----CCACT-CAATTGATC-T----C---A-C-CGCA--TTT----ATTT---TAA-ATTACGACA-TTAAAT--ACCACG--ATCAACTGTAAAT-AAAAGTCTTTT-GAAGGTCAAATATAA-CATTCT---TGTACAA-A--G--ACCTCT-TGCgaaatatctaaagccactttaaagggtactgcatgtcagaatataaatggtcatttatcgttaaaaag
gi|110238 : ATTGTTAACA-CTAACTGTTTGTTGTCAT-CCTGTTAAATAAGCCATGAA-----CCAAT-CAGT--A-T-T----TTA-A-CACCCA--TTA----ACTT---AAG-TTTACCACA-TAAAAT--ATGGTG--ATCAACTGT--ATCA---GCTTTTT-GTAAATCTAACA--ACCATGCC---TGTATAA-A--G--CCCTTT-AGCACTATTGCTTCTAATATGGTTC-ATTAAGTGGATGAGGCAAGTATTAG-TAGAA-TATGAATTCTTAAAA-CATGACTGCAATTCATACAATAAATTGTTGTCAACT-AAGA-AGTTCT-TA-AATT----GAG-TATTTACAGACCTTTCTAGAATTTTTGACACA--AT--ACTCAAA--A--TACTAACTGGTCTT-TAGTT
gi|110239 : ATTGTTAACACTAA---CCTTGTTTTCTT-CCCGTTAAATAAGACATGAA-----CCAAT-CAGT--A-T-T----TTGAA-CACCCA--TTG----ACTT---TAA-TTTA--------AAAT--ATGATG--ATCAACTGT--ATCAAAGACTTTTTTGTAAATCTAACATAACCATGCC---TGTATAA-A--G--ACCTTT-------------------ATGGTCC-ATTAATTGGACAAGGCAAGTATTAG-TAGGA-TATGAATTCCTAAAA-TCTGACTGCAATTCATACAAAAAATTGTTCTCAACT-AAGA-AGTTCT-CA-AGTT----GAG-TATACATAGACCTTTCTAGAA-TTTAAGCATA--AT--ACTTAAA--A--TACTAACTGGTCTA-TAGTTGCCTACCTC---AAAATAACTT---TTTTTTTTGTA-CAAAGGTTTTACTCT-AAC-------TAAGATCA
gi|110240 : TTGTTAATA-TAAACACCTTGTATTTTA-CCTGACAAGTACGATTGAAA-----CCATT-CGATTGA-C-T----CC--A-CACCCA--TCA----GTTC---TAA-CTTACGACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---AGTAAAT-A--G--GCCTTT-TGCCTTTCGATTTTTTATGTGATCT-GAGAGGTGAGTAAGGCAGGAGTCAG-TCGAG-TAGTT-CTCTCGGAATCCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGATT-CT-AACT----GAT-TATGTACAGCTCTTTCTAGACTTTTAGCAACA--ATTGA--TAAA--A--TACTAACTGGTCTA-TAGTAAGATACATC---AGACCTATCA---TTCTTTTTAAA-CAAATGTTTTACTTT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAATGGAA
gi|110241 : TTGTGTTTGA-TTGGACAAATACGATTTGAAAAGATTTAAT--GTTCTA---T----C---A-GTTAAA--TGATAAAGTTT---CAG-TTTGT-ACAGTAAGAT--TTCATG--ATCAACTAG--ATCAAATGCTTTTT-GTAGATCTAG
gi|110242 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----CCAAT-TTATCGA-C-G----CG--A-CTCCCA--T-------TTCAGAGAG-CTTATTACA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCATTCC---GGTATAA-A--A--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGAACTGGAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CA-AATT----GGT-TATATACAGAACGCTCTAGAACTATTGATATACCAT--T--TAGT--A--TGCTAACTGGCCTA-TAATTA
gi|110243 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----CCATT-TTATCGT-C-G----CG--A-CTCCCA--T-------TTCAGAGAG-CTTATTACA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCATTCC---GGTATAA-A--A--AACATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGGAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CA-AATT----GGT-TATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAAGTA--TGCTAACTGGCCTA-TAATTACCAACTTCCAAAGGACTA-CA---CTTTTTGTAAATC---GGGCTGACTCT-TGC--AGTTTT
gi|110244 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----CCAAT-TTATCGA-C-G----CG--A-CTCCCA--T-------TTCAGAGAG-CTTATTACA-TAGAAT--AAC-TA--GTCAACAGT--ATCAAACGCCTTCT-GTAGATCGAGTAAAACCATGCC---GGTATAA-A--G--ACCCTT--GCATCGTTATGTTTGATAAAATCA-AACAGGCGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGAAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CA-AATT----GGT-TATATACAGAACGCTCTAAAACTTTTGATACA--AC--A--TTAATTA--TGCTAACTGGCCTA-TAATTACCAACTTCCAAAGGACTA-CA---CTTTTTGTAAA-T--TGGGCTGACTCT-TGC--AGTTTT
gi|110245 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----CCATT-TTATCGA-C-G----CG--A-CTCCCA--T-------TTCAGAGAG-CTTATTGCA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCAATCC---GGTATAA-A--A--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGGAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CA-AATT----GGT-TATAGACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAAGTA--TGCTAACTGGCCTA-TAATTA
gi|110246 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----TCAAC-TTATCGA-C-G----CG--A-CTCCCA--T-------TTCAGAGAG-CTTATTACA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCATTCC---GGTATAA-A--G--ACTATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTTCTAAAA-CAGGACTGGAACTCATACAGAAGAGAAATTTTAACC-AAAA-AAGTCCGCA-AATT----GGT-TATATACAGAACGCTCTAGAAGTTTAGATATA--AC--A--TTAAGTA--TGCTAACTGGTCTA-TGGT
gi|110247 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----CCAAT-TTATCGA-CGT----G---A-CTCCAA--T-------TTCAGAGAG-CTTA----A-TAA-------TGTG--GTCAATGGT--ATCAAACGCCTTCT-GTAGATCATGTAAAACTATTCC---GGTATAA-A--G--ACCATT-TGCATTGTTATGTTTAAT-TAAACCAAAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTCCTCCTAAAA-CAAGACTGAAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CC-AATT----GGT-TATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAAGTA--TGCTTACTTGCCTA-TAATTAggggcataaattag
gi|110248 : CAGATAAGACTGAAA-----CCACT-CAACTGA-C-TT---C---A-CCCCGA--TTT----CTTT---TAA-TTTGTGGAA-TAAAAT--CCCATG--TTCAACTGT--ATCAAAAGCCTTCT-GAAGGTCCGACATAATAATAC
gi|110249 : TAAGATTTGAA-----CCAAT-GTATCGA-C-G----CG--A-CTCCCATTTCA----G-------AGAGTTATTACA-TAGAAT--AACGTT--GTCAACGGT--ATCAAACGCCTTCT-GTAGATCTAGTAAAACCATTCC---GGTATAA-A--G--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGAAACTCATAAAGAAGAGAATTTTTATCT-AAAA-AATCTG-CA-AATT----GGT-TATATACAGAACGCTCTAGAACATTTGATATA--AC--A--TTAAGTA--TGCTAACTGGCCTA-TAATTA
gi|110250 : ACA-TAAAATACGTAGTATTGTCAATTGT--ATCATAGGCTGTTT-GTAGGTCAAGCATGATCATACC---AGTGTAAGA--G--GCC-------------ATTT--AATGTAGTAA-GTTAAATGGACAAGGCACGAATCTG-TAGAGAAATTTG-TTCGATAT-CCTGACTGAAATTCATATTGTAATCTATTTTTAATT-AAAA-ATGTTT-TA-AGAT----GGT-TGTATACAACCCTTTCTAAAAGTTTGGAGACT--AT--A--CAAAGGA--TGCTAACTTGTCTA-TAGTTGCCTACCCC---CAGTCTGACATATTTTTTCTTAAA-GAGGGGTTTGACTCT-
gi|110251 : GTG--ATCTACAGT--ATCAAAAGCTTTTT-GTAGATCTAGCAGAATCATACC-----TACAA-C--ATTACCCTTATCCATATCCAGCCTT-ATATAATCT-GTCAAATGGATGAGACGCATGTCAGTTGAAA-AAAACACTTGTGGAC-CCTGACTGAAATTTATATAACAATGTGTT-TTCTTT-GAAATAAGATT-CA-ACTT----GTT-CATAAACA-ATTTTTCAAATATCTTAGACACA--tgatgactttagctca
gi|110252 : tTTCT-GTAGATCGAGTAAAACCATTCC---GGTATAA-A--G--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAATGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGAAACTCATACAGAAGAGAATTTTTATCT--AAA-AATCCG-CA-AATT----GGT-TATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAA--GTCTGCTAACTGGCCTATTAGT
gi|110253 : tTCATATAGTAATCTACGTTTAATT-AAAA-GTGTTT-CA-AGTT----CAT-TGTATAAATCCTTTTCTAAAATTTTGGACACA--AT--A--CAAAGGA--TGCTAACCGACCGA-TAGTTGCCCACTTC---AG-TATGACAC--TTTTTCTTAAA-TAAAGGTTTGACTCT-TGCTGAC--TTAAGCTCATATGGCACATTTATT
blockSeqs : A A TG CTA GT GA T A T AAGAT C ACG T T TTTATC A G TT GATAAAGTTTC A CG G ACGTA TT AA T T A T G A G TT TT T A T T T G CA G G T A C T A A C T TT G G A T GTCCG T CTCG G CC T T A A CC TGA GT TC T GAT A CAA A A TAT T A TG A
blockSeqs : A A TG TA GT GA A A G . C CG T . TTTGA . G . CAGTTCT . CG . GTT . AA T . A T G A . . . T . T T T G T G G . . C . A A C T TT G G . . GTTT . . . CT T T A A . AGA TT . . GAT A CAA A T C . . . .
blockSeqs : A A . TA GT A T A G . C CG T . TTTA . G . CAGTTCT . CG . GTT . . T . A T G A . . . T . T T T G T G G . . C . A A C T TT G G . . GATT . . . CT T T A A . TGA GT . . GAT A . A T . . . . .
blockSeqs : A A . TA GT A T A A . C CG T . TCC . A . CAGTTCT . TG . GTT . . T . A T G A . . . T . T T T G T G G . . C . A A C T TT G G . . AGGT . . . AC G T A A . TGA GT . . GAT A . A A . . . . .
blockSeqs : G G . TA TT A T C T . A CG A . TCG . A . CAGTTCT . CC . GTT . . G . T T G T . . . T . A T A A T T A . . A . T T T A CA G A . . GGTT . . . GC T T A C . ACT GT . . CCT C . A C . . . . .
blockSeqs : G G . AT TT A T T A . T CA C . TCC . A . TAACTTT . CT . ATG . . G . T T G T . . . T . A T T G C T A . . A . T T T A AT G A . . TTCT . . . AC T C A T . ACT GT . . CCT C . G T . . . .
blockSeqs : TT TG T A A G . C CA T . GCG . A . CAACTTT . CG . GCC . . A . A T T T . . . T . T T A C C C G . . A . T T T A TT G A . . TTAT . . . AC T T T C . ACT GG . . GAT A . G A . . . .
blockSeqs : TT TT T A A T . C CA T . GCG . A . TTATTTT . CG . ACC . . A . A T T T . . . T . A T A A C T A . . A . T T A A TT C A . . TTCT . . . CT T T A C . ACT GG . . CCA T . G A . . . .
blockSeqs : CT AT T T T T . A CA C . GCG . A . TAACTTA . CC . ATG . . G . T T G T . . . T . T T T A C T A . . A . A A C T TT G G . . TTCT . . . AA T C A A . TGA . . . CCA T . . . . . . .
blockSeqs : TA GT T C T G . A CA C . GCG . T . TGACTTT . CG . ATG . . T . T T G T . . . T . G G A G C G G . . A . G C A G GA T T . . GATT . . . AA G C T T . T . . . CCT C . . . . . .
blockSeqs : . GA A T A T . T CG C . GCG . T . CAGTTCT . TT . GTT . . T . A A G A . . . A . G G A A T A T . . A . G C A G GA T T . . TCCG . . . AA G C T T . A . . . CCC T .
blockSeqs : GA A G A T . A TT C . GTG . T . TTCAGAG . TT . TTC . . C . T A T G . . . A . G G G A A A T . . A . G C A G GA T T . . TCCG . . . AA G C T T . A . . . . .
blockSeqs : GA T G T T . A TT C . TTC . T . TTCAGAG . TT . AAC . . C . G A T G . . . C . G G A A A C T . . A . G C A G GA T T . . TCCG . . . AA G G T T . A . . .
blockSeqs : GA T G T T . T TT C . GCG . T . TTCAGAG . TT . AAC . . C . G A G G . . . A . G G A A A A T . . C . G C A G GA T A . . TCCG . . . AA G C A T . A . . .
blockSeqs : GA T G T T . A TT C . TC . T . TTCAGAG . TT . AAC . . C . G A T G . . . A . G G A A A A T . . A . A C A G GA T T . . TCCG . . . AA G C T T . A . . .
blockSeqs : GA T G T T . T TT T . TT . T . TTCAGAG . TG . AAC . . C . G A T G . . . A . G G A A A A T . . G . G C A G GA T T . . TCTG . . . CC G G T T . A . . .
blockSeqs : T T G T T . A TT C . TA . C . TTCAGAG . TT . AAC . . C . G T T G . . . A . T T A G A A T . . A . T T T A CT T A . . GTTT . . . AT T T G G . A . . .
blockSeqs : T T G T G . A CA . . TC . T . TTCTTTT . T . CCC . . A . A A A G . . . C . G C A A A T C . . A . T T C A GT T T . . GATT . . . AA T C A C . A . . .
blockSeqs : T . C GT . . TC . . . GTT . . . AAC . . C . C T T A . . . A . . G . A T C C . . . . G C A G GA T T . . TCCG . . . CC G T T T . A . . .
blockSeqs : . . A G . . . . . . CAG . . . AT . . G . T G A G . . . . . . . . . A A T . . T A CT . A . . GTTT . . . C T . G C .
blockSeqs : . T . . A . A A A . . . . . .
blockSeqs : . . . . T . T
blockSeqs : . G
blockSeqCons : G*** A**** CCT
originalCons : TCCACGTACGATATTTTCA--AAGTCGGACATGGTATTGTTAACA-TAAACACCTTGTGTTCTN-CCNGNCAAATAAGATTTGAA-----CCANT-CGATCGA-C-T----C---A-CNCCCA--TCA----GTTC---TAG-CTTACGACA-TAAAAT--GTCGTG--ATCAACTGT--ATCAAACGCCTTTT-GTAGATCGAGCATAACCATGCC---GGTATAA-A--G--ACCTTT-TGCATTNTTATTTTTAATGTGATCC-GANAGGTGAATAAGGCANGTGTCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGAAACTCATACAGNAGANNATTNTTANCT-AAAA-AANNCT-CA-AATT----GGT-TATATACAGANCTTTCTAGAACTTTNGANACA--AT--A--TAAA--A--TGCTAACTGGTCTA-TAGTTANNTACNTC---AGACCTANCA---TTTTTTTTAAA-CAAAGGTTTTACTCT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAATGGAA
finalCons : TCCACGTACGATATTTTCA--AAGTCGGACATGGTATTGTTAACA-TAAACACCTTGTGTTCTN-CCNGNCAAATAAGATTTGAA-----CCANT-CGATCGA-C-T----C---A-CNCCCA--TCA----GTTC---TAG-CTTACGACA-TAAAAT--GTCGTG--ATCAACTGT--ATCAAACGCCTTTT-GTAGATCGAGCATAACCATGCCG---GTATAA-A--G--ACCTTT-TGCATTNTTATTTTTAATGTGATCC-GANAGGTGAATAAGGCANGTGTCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGAAACTCATACAGNAGANNATTNTTANCT-AAAA-AANNCT-CA-AATT----GGT-TATATACAGANCTTTCTAGAACTTTNGANACA--ATA----TAAA--A--TGCTAACTGGTCTA-TAGTTACCTACNTC---AGACCTANCA---TTTTTTTTAAA-CAAAGGTTTTACTCT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAATGGAA
Alignments
lowQualScore : 11 2222222222 22222222222222 11111 22 111 111111
lowQualScore : 1 1 55 333 0 11 55 1 1 1 44444 1 333 3 1 7777777777 1 3 22 99999999999999 1 77 1 77777 22 44 4 1 5 3 0 1 6666 3 22 22 4 1 0 2 1 2 3 2 66 1 1 0 1 0 1 1 2 3 2 1 2 22 2 1 1 1 22222 1 4444 1 33 1 2 1 1 22 99999 0 22 22 2 33 2 111 33 000000 3 3 55 6
lowQualScore : . . .. ... . .. .. . . . ..... . ... . . .......... . . .. .............. . .. . ..... .. .. . . . . . . .... . .. .. . . . . . . . . .. . . . . . . . . . . . . .. . . . . ..... . .... . .. . . . . .. ..... . .. .. . .. . ... .. ...... . . .. .
lowQualScore : 4 4 77 555 2 88 22 0 0 5 88888 0 000 2 9 7777777777 9 5 66 44444444444444 9 11 8 00000 44 88 7 7 0 2 6 9 6666 6 55 55 0 8 1 3 0 0 9 0 88 0 0 9 9 2 9 4 0 1 3 0 5 00 9 0 9 9 99999 9 0000 9 00 3 4 0 0 66 88888 1 00 88 0 11 1 777 77 333333 6 6 55 7
consensus : TCCACGTACGATATTTTCA--AAGTCGGACATGGTATTGTTAACA-TAAACACCTTGTGTTCTN-CCNGNCAAATAAGATTTGAA-----CCANT-CGATCGA-C-T----C---A-CNCCCA--TCA----GTTC---TAG-CTTACGACA-TAAAAT--GTCGTG--ATCAACTGT--ATCAAACGCCTTTT-GTAGATCGAGCATAACCATGCC---GGTATAA-A--G--ACCTTT-TGCATTNTTATTTTTAATGTGATCC-GANAGGTGAATAAGGCANGTGTCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGAAACTCATACAGNAGANNATTNTTANCT-AAAA-AANNCT-CA-AATT----GGT-TATATACAGANCTTTCTAGAACTTTNGANACA--AT--A--TAAA--A--TGCTAACTGGTCTA-TAGTTACCTACNTC---AGACCTANCA---TTTTTTTTAAA-CAAAGGTTTTACTCT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAATGGAA
Reference ( family-718 ) : TCCACGTACGATATTTTCA--AAGTCGGACATGGTATTGTTAACA-TAAACACCTTGTGTTCTN-CCNGNCAAATAAGATTTGAA-----CCANT-CGATCGA-C-T----C---A-CNCCCA--TCA----GTTC---TAG-CTTACGACA-TAAAAT--GTCGTG--ATCAACTGT--ATCAAACGCCTTTT-GTAGATCGAGCATAACCATGCC---GGTATAA-A--G--ACCTTT-TGCATTNTTATTTTTAATGTGATCC-GANAGGTGAATAAGGCANGTGTCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGAAACTCATACAGNAGANNATTNTTANCT-AAAA-AANNCT-CA-AATT----GGT-TATATACAGANCTTTCTAGAACTTTNGANACA--AT--A--TAAA--A--TGCTAACTGGTCTA-TAGTTACCTACNTC---AGACCTANCA---TTTTTTTTAAA-CAAAGGTTTTACTCT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAATGGAA
gi|110229 : TCCACATACAATATTTTCA--AAGTCGGACATGGTATTGTTAATA-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTGAAA-----CCACT-CGATTGA-C-T----CC--A-CGCCCA--TCA----GTTC---TAA-CTTACGACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCCTATGACATCATA--G--GCCTTT-TGCCTTTTGATTTTTTATGTGATCT-GAGAGGTAAGTAAGGCAGGAGTCAG-TCGAG-TAGTTCCCTCGGAAT-CCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGATT-CT-AACT----GAT-TATATACAGCTCTTTCTAGAATTTAAGAAACA--ATTGA--TAAA--A--TACTAACTGGTCTA-TAGTTAAA-ACATC---AGACCTATCA---TTCTTTTTAAA-CAAAGGTTTTACTTT-GGC--ACTTTTAAGATCACAAGGAAG-TTCATTACTTGTAATGGAA
gi|110230 : TCCACATACAATATTTTCA--AAGTCGGACACGGTATTGTTAATA-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTTAAA-----CCACT-CGATTGA-C-T----C---A-CGCCCA--TCA----GTTC---TTA-CTTACGACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---A--ATAA-ATTG--GCCTTT-TGCCTTTTAATTTTTTATGTGATCT-GAGAGGTGAGTAAGGCAGGAGTCAG-TCGAG-TAGTTCCCTCGGAAT-CCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGTTT-CT-AACT----GAT-TATATACAGCCCTTTCTAGAATTTTAGAAACA--ATTGA--TAAA--A--TACTAACTGGTCTA-TAGTTAGATACATC---AGACCTAATA---TTCTTTTTAAG-CAAAGGTTTTACTTT-GGC--ACTTTTAAGATTACACAGAAT-TTCATTACTATTTATCGAA
gi|110231 : TCCACATACAATATTTTCA--AAGTCGGATATGGTATTGTTAATA-TAAACGCATTGTGTTCTA-CCAGACAAATACGATTGAAA-----CCACT-CGATTGA-C-T----CC--A-CGCCCA--TCA----GTTC---TAA-CTTACGACA-TAAAAT--GTTGCG--ATCACCTGT--GTCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---AGTAAAT-A--G--ACCTTC-TGCCTTTTGATTTTTTATGTGATCT-GAGAGGTAAGTAAGGCAGGAGTCAA-TCGAA-TAGTTCCCTCGGAAT-CCACTCTGAAGATCATATAACATATTATTGTTAGTTAAAAA-AAGATT-CT-AACT----GAT-TATATACAGCTCTTTCTAGAATTTTAGAAACA--ATAGA--TAAA--A--TACTAACT-GTCTA-TAGCAAGATACATC---AGACCTATCA---TTGTTTTTAAA-CAAAGGTTTTACTTT-GGC--ACTTTTAAGATAAAATGGAAT-TTCATTACTAGTAATGGAA
gi|110232 : TCCACACACAATATTTTCA--AAGTCGGACATGGTATTGTTAATA-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTGAAA-----CCACT-CGATTG-----------------CCCA--TCA----GTTC---TAA-CTTACGACA-TAAAGT--GTTGTG--ATCATCTGT--TTTAAATGCTTTTT-GTAGATCAAGAATAATCATGCC---AGCAAAT-A--G--GCCTTT-TGCCTTTTGATTTTTTATGTGATCT-GAGAGGTGAGTAAGGCAGGAGTCAG-TCAAG-TAGTTCCCTCGGAAT-CCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAAGGT-TATAACT----GAT-TATATACAGCTCTTTCTAGAATTTTAGAAACA--ATTGA--TAAA--A--TACTAACTAGTCTA-TAGTTAGATACATA---AGACCTATCA---TTCTTTTTAAA-CAAAGGTTTTACTTT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAAT
gi|110233 : TCTACATACAATATTTTCA--AAGTCGGACATGGTATTGTTGATT-TAAACACCTTGTGTTCTA-CCTGACAAGTACGATTAAAA-----CCACT-CGATTGA-C-T----CG--A-CGCCCA--TCA----GTTC---TAA-TTTATGACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---AGTAAAC-A--G--GCCTTT-TGCCTTTTGATTTTTTATGTGATCT-GAGAGTTGAGTAAGGTAGGAGTCAG-TCGAG-TAGGTCCCTCGGAAT-CCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGGTT-CT-AAAT----GAT-TATATACAG-CCGTTTTAGAATTTTAAAAACA--ATTGA--TAAA--A--TACAAACTGGTCTA-TAGTTAGATACAT
gi|110234 : ATTGTTAGCA---ATGACTTTTTTTTCTT-CCTGCTAAATAACACATGAA-----CCAAT-CAGTATA-T-T----T---AACACCCA--TTA----ACTT---TAG-TTTACCACA-TAAAAT--AT---G--ATCAACTGT--TTCAAAGGCTTTTT-GTAAATCTAACATAACCATGCC---TGTATAA-A--G--TCCTTC-GGCACTATTGCTTCTAATATGGTAC-ATTAAGTGGGCAAAGCAAGTGTCAA-CAGAA-TATGAATTCCTAAAA-CCTGACAGCAATTCATACAATAAACAGTTGTCAACT-AAAA-ATTTCT-CA-AGTT----GTG-TATATACAAACCTTTATAGAATTTTAGACACA--AT--ACTTAAA--A--TAATAACTGGTATA-TAGTTGCCT-------------TACT----TTTTTCTTGTA-CAGAGGTTTTGCTCTAGAT--ACTTTCA
gi|110235 : tccacatgttacagatttatactctgaaaaaacTGTTACCA-ATAACTGTTTGTTTTCTT-CCTGTTAAATAAGA------------CATTACG------T-T----A---A-CACCCA--TCA----ACTT---TAG-TTTACTACA-TAAATT--ATGATG--ATTAATTGT--ACCATAGGCTTTTT-GTACATCTAAAATAACCATGCC---TGTATAA------------T-GGCACTATTGCTTCTTATGTGATCC-ATTAAGTGGACAAGGCAAGTATCAG-TGCAA-TATAAATTCCTAAAA-CCTGACTGCAATTCATACAATTAAATGTTGTCAACT-AAGA-AGTTAT-CA-TGTTCTCGAGTGCATAAACTGGCCTTTCTAGAACTTTAGATACT--CT--ACTTAAA--A--TATTAACTGGTCTA-TAGTTGCCTACCTC---A
gi|110236 : tccacatgtcacagattcatactctgaaaatacagCGTATGAAATGTTCATGAAATCCGACATTGTATTATTAACA-TTTATAGATTGT-TTATGATCAGACAAACAAGATTAAAA-----CCACT-CAATCGA-T-TTTATC---A-CATTTA--T------GTT-----AA-ATTACGACA-TTAATT--GCCACG--ATCAACTGTAAAT-AAAAGCCTTCT-GAAGGTCAAACATAA-CATTCT---TGTACAA-A--G--ACCTCT-TGCATTTTTACTTTTAATCTGGCCC-GTCAAATGA--AAGGCAGGAGACAG-TGGAA-TA
gi|110237 : CGTATGAAATGTTCATGAAATCCGACATTGTATTATTAACA-TTTATAGATTGT-TTATGATCAGACAAACAAAAATGAAA-----CCACT-CAATTGATC-T----C---A-C-CGCA--TTT----ATTT---TAA-ATTACGACA-TTAAAT--ACCACG--ATCAACTGTAAAT-AAAAGTCTTTT-GAAGGTCAAATATAA-CATTCT---TGTACAA-A--G--ACCTCT-TGCgaaatatctaaagccactttaaagggtactgcatgtcagaatataaatggtcatttatcgttaaaaag
gi|110238 : ATTGTTAACA-CTAACTGTTTGTTGTCAT-CCTGTTAAATAAGCCATGAA-----CCAAT-CAGT--A-T-T----TTA-A-CACCCA--TTA----ACTT---AAG-TTTACCACA-TAAAAT--ATGGTG--ATCAACTGT--ATCA---GCTTTTT-GTAAATCTAACA--ACCATGCC---TGTATAA-A--G--CCCTTT-AGCACTATTGCTTCTAATATGGTTC-ATTAAGTGGATGAGGCAAGTATTAG-TAGAA-TATGAATTCTTAAAA-CATGACTGCAATTCATACAATAAATTGTTGTCAACT-AAGA-AGTTCT-TA-AATT----GAG-TATTTACAGACCTTTCTAGAATTTTTGACACA--AT--ACTCAAA--A--TACTAACTGGTCTT-TAGTT
gi|110239 : ATTGTTAACACTAA---CCTTGTTTTCTT-CCCGTTAAATAAGACATGAA-----CCAAT-CAGT--A-T-T----TTGAA-CACCCA--TTG----ACTT---TAA-TTTA--------AAAT--ATGATG--ATCAACTGT--ATCAAAGACTTTTTTGTAAATCTAACATAACCATGCC---TGTATAA-A--G--ACCTTT-------------------ATGGTCC-ATTAATTGGACAAGGCAAGTATTAG-TAGGA-TATGAATTCCTAAAA-TCTGACTGCAATTCATACAAAAAATTGTTCTCAACT-AAGA-AGTTCT-CA-AGTT----GAG-TATACATAGACCTTTCTAGAA-TTTAAGCATA--AT--ACTTAAA--A--TACTAACTGGTCTA-TAGTTGCCTACCTC---AAAATAACTT---TTTTTTTTGTA-CAAAGGTTTTACTCT-AAC-------TAAGATCA
gi|110240 : TTGTTAATA-TAAACACCTTGTATTTTA-CCTGACAAGTACGATTGAAA-----CCATT-CGATTGA-C-T----CC--A-CACCCA--TCA----GTTC---TAA-CTTACGACA-TAAAAT--GTTGTG--ATCAACTGT--ATCGAATGCTTTTT-GCAGATCAAGCATAATCATGCC---AGTAAAT-A--G--GCCTTT-TGCCTTTCGATTTTTTATGTGATCT-GAGAGGTGAGTAAGGCAGGAGTCAG-TCGAG-TAGTT-CTCTCGGAATCCACTCTGAAGATCATATAACATATTATTGTTAGTT-AAAA-AAGATT-CT-AACT----GAT-TATGTACAGCTCTTTCTAGACTTTTAGCAACA--ATTGA--TAAA--A--TACTAACTGGTCTA-TAGTAAGATACATC---AGACCTATCA---TTCTTTTTAAA-CAAATGTTTTACTTT-GGC--ACTTTTAAGATCACACGGAAT-TTCATTACTAGTAATGGAA
gi|110241 : TTGTGTTTGA-TTGGACAAATACGATTTGAAAAGATTTAAT--GTTCTA---T----C---A-GTTAAA--TGATAAAGTTT---CAG-TTTGT-ACAGTAAGAT--TTCATG--ATCAACTAG--ATCAAATGCTTTTT-GTAGATCTAG
gi|110242 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----CCAAT-TTATCGA-C-G----CG--A-CTCCCA--T-------TTCAGAGAG-CTTATTACA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCATTCC---GGTATAA-A--A--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGAACTGGAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CA-AATT----GGT-TATATACAGAACGCTCTAGAACTATTGATATACCAT--T--TAGT--A--TGCTAACTGGCCTA-TAATTA
gi|110243 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----CCATT-TTATCGT-C-G----CG--A-CTCCCA--T-------TTCAGAGAG-CTTATTACA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCATTCC---GGTATAA-A--A--AACATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGGAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CA-AATT----GGT-TATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAAGTA--TGCTAACTGGCCTA-TAATTACCAACTTCCAAAGGACTA-CA---CTTTTTGTAAATC---GGGCTGACTCT-TGC--AGTTTT
gi|110244 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----CCAAT-TTATCGA-C-G----CG--A-CTCCCA--T-------TTCAGAGAG-CTTATTACA-TAGAAT--AAC-TA--GTCAACAGT--ATCAAACGCCTTCT-GTAGATCGAGTAAAACCATGCC---GGTATAA-A--G--ACCCTT--GCATCGTTATGTTTGATAAAATCA-AACAGGCGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGAAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CA-AATT----GGT-TATATACAGAACGCTCTAAAACTTTTGATACA--AC--A--TTAATTA--TGCTAACTGGCCTA-TAATTACCAACTTCCAAAGGACTA-CA---CTTTTTGTAAA-T--TGGGCTGACTCT-TGC--AGTTTT
gi|110245 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----CCATT-TTATCGA-C-G----CG--A-CTCCCA--T-------TTCAGAGAG-CTTATTGCA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCAATCC---GGTATAA-A--A--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGGAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CA-AATT----GGT-TATAGACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAAGTA--TGCTAACTGGCCTA-TAATTA
gi|110246 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----TCAAC-TTATCGA-C-G----CG--A-CTCCCA--T-------TTCAGAGAG-CTTATTACA-TAGAAT--AACGTG--GTCAACGGT--ATCAAACGCCTTCT-GTAGGTCGAGTAAAACCATTCC---GGTATAA-A--G--ACTATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTTCTAAAA-CAGGACTGGAACTCATACAGAAGAGAAATTTTAACC-AAAA-AAGTCCGCA-AATT----GGT-TATATACAGAACGCTCTAGAAGTTTAGATATA--AC--A--TTAAGTA--TGCTAACTGGTCTA-TGGT
gi|110247 : TGTGATCTT-TCGGTTAGATAAGATTTGAA-----CCAAT-TTATCGA-CGT----G---A-CTCCAA--T-------TTCAGAGAG-CTTA----A-TAA-------TGTG--GTCAATGGT--ATCAAACGCCTTCT-GTAGATCATGTAAAACTATTCC---GGTATAA-A--G--ACCATT-TGCATTGTTATGTTTAAT-TAAACCAAAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTCCTCCTAAAA-CAAGACTGAAACTCATACAGAAGAGAATTTTTATCT-AAAA-AATCCG-CC-AATT----GGT-TATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAAGTA--TGCTTACTTGCCTA-TAATTAggggcataaattag
gi|110248 : CAGATAAGACTGAAA-----CCACT-CAACTGA-C-TT---C---A-CCCCGA--TTT----CTTT---TAA-TTTGTGGAA-TAAAAT--CCCATG--TTCAACTGT--ATCAAAAGCCTTCT-GAAGGTCCGACATAATAATAC
gi|110249 : TAAGATTTGAA-----CCAAT-GTATCGA-C-G----CG--A-CTCCCATTTCA----G-------AGAGTTATTACA-TAGAAT--AACGTT--GTCAACGGT--ATCAAACGCCTTCT-GTAGATCTAGTAAAACCATTCC---GGTATAA-A--G--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAAAGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGAAACTCATAAAGAAGAGAATTTTTATCT-AAAA-AATCTG-CA-AATT----GGT-TATATACAGAACGCTCTAGAACATTTGATATA--AC--A--TTAAGTA--TGCTAACTGGCCTA-TAATTA
gi|110250 : ACA-TAAAATACGTAGTATTGTCAATTGT--ATCATAGGCTGTTT-GTAGGTCAAGCATGATCATACC---AGTGTAAGA--G--GCC-------------ATTT--AATGTAGTAA-GTTAAATGGACAAGGCACGAATCTG-TAGAGAAATTTG-TTCGATAT-CCTGACTGAAATTCATATTGTAATCTATTTTTAATT-AAAA-ATGTTT-TA-AGAT----GGT-TGTATACAACCCTTTCTAAAAGTTTGGAGACT--AT--A--CAAAGGA--TGCTAACTTGTCTA-TAGTTGCCTACCCC---CAGTCTGACATATTTTTTCTTAAA-GAGGGGTTTGACTCT-
gi|110251 : GTG--ATCTACAGT--ATCAAAAGCTTTTT-GTAGATCTAGCAGAATCATACC-----TACAA-C--ATTACCCTTATCCATATCCAGCCTT-ATATAATCT-GTCAAATGGATGAGACGCATGTCAGTTGAAA-AAAACACTTGTGGAC-CCTGACTGAAATTTATATAACAATGTGTT-TTCTTT-GAAATAAGATT-CA-ACTT----GTT-CATAAACA-ATTTTTCAAATATCTTAGACACA--tgatgactttagctca
gi|110252 : tTTCT-GTAGATCGAGTAAAACCATTCC---GGTATAA-A--G--ACCATT-TGCATTGTTATGTTTAATAAAATCA-AAATGGTGAATAAGACATGTATCAG-TGGAG-TATTTACTCCTAAAA-CCGGACTGAAACTCATACAGAAGAGAATTTTTATCT--AAA-AATCCG-CA-AATT----GGT-TATATACAGAACGCTCTAGAACTTTTGATATA--AC--A--TTAA--GTCTGCTAACTGGCCTATTAGT
gi|110253 : tTCATATAGTAATCTACGTTTAATT-AAAA-GTGTTT-CA-AGTT----CAT-TGTATAAATCCTTTTCTAAAATTTTGGACACA--AT--A--CAAAGGA--TGCTAACCGACCGA-TAGTTGCCCACTTC---AG-TATGACAC--TTTTTCTTAAA-TAAAGGTTTGACTCT-TGCTGAC--TTAAGCTCATATGGCACATTTATT