lowQualScore : 1111 11 11111111111 222222222 111111111 2222 1
lowQualScore : 3333 22 44 3 22 1 8 4 8 44444 4 33333333333 4 5555 55555 2 33 99999 2 7 3 2 999999999 2 2 2 2 222222222 66 222 4 4 999999999 0 1111 5
lowQualScore : .... .. .. . .. . . . . ..... . ........... . .... ..... . .. ..... . . . . ......... . . . . ......... .. ... . . ......... . .... .
lowQualScore : 2222 66 00 3 33 7 3 3 3 22222 6 77777777777 2 0000 99999 4 22 88888 4 8 0 4 444444444 4 4 4 5 111111111 99 999 0 0 555555555 9 2222 0
consensus : GACA--NNGAC--A--TAT-T--T-TATT-AAGTAATNTAGGCCTCCGGCCCATAATACA-----ACATGT--A--AA--TACATCATA----TAG-----A-GCGA--C--A--CA-AANTGAA-TAT---------T-A-T-AC-AT--T-----TAT--ACAA-GTCAATATTACAG-AAT-TCACATATT--------AAAGTGAATATA----AG-TAATAA
Reference ( gi|6218 ) : GACA--TAGAC--A--TAT-T--T-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACA-----ACATGT--A--AA--TACATCATA----TAG-----A-GTGA--C--A--CA-AACTGAA-TAT---------T-A-T-AC-AT--T-----TAT--ACAA-GTCAATATTACAG-AAT-TCACATATT--------CAAGTGAATATA----AGCTAATAA
gi|6223 : GACA--TAGAC--A--TAT-T--T-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACA-----ACATGT--A--AA--TACATCATA----TAG-----A-GTGA--C--A--CA-AATTAAA-TAT---------T-A-T-AC-AT--T-----TAT--ACAA-GTCAATATTACAG-AAT-TCACATATT--------AAAGTGA
gi|6222 : GACA--TAGAC--A--TAT-T--T-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACA-----ACATGT--A--AA--TACATCATA----TAG-----A-GTGA--C--A--CA-AATTAAA-TAT---------T-A-T-AC-AT--T-----TAT--ACAA-GTCAATATTACAG-AAT-TCACATATT--------AAAGTGA
gi|6221 : GACA--TAGAC--A--TAT-T--T-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACA-----ACATGT--A--AA--TACATCATA----TAG-----A-GTGA--C--A--CA-AATTAAA-TAT---------T-A-T-AC-AT--T-----TAT--ACAA-GTCAATATTACAG-AAT-TCACATATT--------AAAGTGA
gi|6220 : GACA--TAGAC--A--TAT-T--T-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACA-----ACATGT--A--AA--TACATCATA----TAG-----A-GTGA--C--A--CA-AATTAAA-TAT---------T-A-T-AC-AT--T-----TAT--ACAA-GTCAATATTACAG-AAT-TCACATATT--------AAAGTGA
gi|6209 : GACA--TAGAC--A--TAT-T--T-TATT-AAGTATTATAGGCCTCCGGCCCAAAATACA-----ACATGT--A--AA--TACATCATA----TAG-----A-GTGA--C--A--CA-AATTGAA-TAT---------T-A-T-AC-AA--T-----TAT--ACAA-GTCAATATTACAT-AAT-TCACATATC--------AAAGTGA
gi|6219 : aataGACA--TAGAC--A--TAT-T--T-TATT-AAGTAATATAGGCCTCCGGCCAAAAATACA-----ACATGT--A--AA--TGCATCATA----TAG-----A-GTGA--C--T--CA-AATTGAA-TAT---------T-A-T-AC-AT--T-----TAT--A------CAATATTACAG-AAT----CATA-T--------CA--TGAATAT
gi|6217 : GACA--TAGAC--A--GAT-T--T-TATT-AAGTGATATAGGCCTCTGGCCCAAAATACA-----ACATAC--A--AA--TACATCATA----TAG-----A-GTGA--C--A--CA-AATTGAA-TAG---------T-A-T-AC-AT--TTCAAGTAT--ACAA-GTCAATATTA
gi|6212 : GACAA-TAGAC--AA-TAT-T--T-TATTTGAGTAATGTAGGCCTCCGGCCCATAATAC------ATTTTT--A--AA--CACATGGTAAACGTGG-----A-ATCT--A--A--CA-AA-TAAA-TAT---------TCA-T-A
gi|6205 : aatGACA--ATGAC--AAATGT-T--T-TATT-AAGTAATCTAGGCCTCCGGCCCATAATACA-----atacgaacattataattt
gi|6201 : aatGACA--ATGAC--A--AATCT--T-TATT-AAGCAATGTAGGCCTCTGGCTCATAATACA-----AAATGT-------------TCA-A----CAA-----A-GCGA--CATA--CA-AAATGAATTATGTAACAAAAC-A-T-AC-AA--TAA---TATTAACAT-GTCAATATtaat
gi|6206 : aatGACA--ATGAC--AA-TAT-G--TGTATT-CAGTAATTTAAGCCTCCGGCCCATAATACA-----ACATGT--A--gatttaggtaataa
gi|6215 : aatGACAATTACAA--A--TGT-T--T-TATT-AAGCAATTCAGGCCTCCGACCCATAATACATAATTACATTT--A--TA--T-CAT-ATA----TAGCGAAAA-GTGA--C--------AAC--AG-TGT---------T-A-C-AT-ATAAT-----TAG--ATAA-ATcaa
gi|6211 : atGACA--ACGAC--AA-TAG-T--T-TATTCAAGTAATTTAGGCCACCGGCCCATAATACA-----Aaacaa
gi|6210 : aatGACA--ATGAC--AA-TAT-T--T-TATTCAAGTAATTTAGGCCACCGTCCCATAATACA-----A-ATAT--A--a
gi|6203 : aatGACA--ATGAC--A--AATCT--T-TATT-AAGCAATGTAGGCCTCTGGGCCATAATACA-----AAATGTTCAACAA--CGCAACATA-----AA-----A-ATGAATT--A--TATAACAAAA-------------C-A-T-AC-AA--TAA---TATTAACAT-GTCAATATcacaaa
gi|6208 : aatGACA--ATGACGAA--TGT-T--T-GATT-AAGCTATTTAGGCCTCTGGCCCATAATACA-----TAAT-T--A--CATTTATATCAAA----TAT-----A-GTGA---------A-AAGTGAA-CAG---------T-GTT-AC-AA--A-----TAT--AAAATGT--ATATTAgatttaggtaataa
gi|6214 : aatGACA--ATGAC--AA-TAG-T--T-TATTCAAGTTATTTAGGCCACTGGCCCATAATACA-----A-ATAT--A--atagataaata
gi|6213 : atGACA--ATGAC--A---AT-TCTT-TATT-AAGCAATGTAAGCCTCCGGCCCATAAAACA-----AAATGT-------------TCA-A----CAA-----ATGCGA--C--ATTCA-AAAT--C-TAT---------T-A-T-AT-A--------------ACAA----AACA-TACAATAATATCA---ACT--------C--GTCAATATGATTTAGGTAATAAcacaaa
gi|6225 : atGAC--A--TAT-T--T-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACA-----ACATGT--A--AA--TACATCATA----TAG-----A-GTGA--C--A--CA-AATTGAA-TAT---------T-A-T-AC-AT--T-----TAT--ACAA-GTCAATATTACAG-AAT-TCACATATT--------CAAGTGAATATA----AGCTAATAA
gi|6216 : GAC--AA-TAG-T--T-TATTCAAGTAATTTAGGCCACCGGCCCATAATACA-----A
gi|6207 : atgacaatagttt--A--TGT-T--G-TATT-AAGCAATCTAAGCCTCCGGCCGATAATACA-----a
gi|6202 : aatgacaatggcaa-T--T-TATT-AAGCAATGTAGGCCTCTGGCCCATAATACA-----AAATGT-------------TCA-A----CAA-----A-GCAA--CATA--CA-AAATGGA-TTT---------T-A-TAACAAA--A-----CAT--ACAA---TAATATTAtaat
gi|6224 : aatgacaatgacaaactc-T--T-TATT-TAGGAATATAGGCCTCCAGCCCATAATACA-----AAATGT---------T-CAACAAA----TA---------CGA--C--A--TA---CT--A-TAT---------T-A-T-AC-A---T-----TAT----------GATATAACAC-AA---CACACAATGAGAGTAACAAGTCAATATA----Aacatgtcaatatgatttaggtaataa
gi|6204 : tgactc-T--T-TAT--AAACAATGTAGGCCTCCGGCTCATAATACA-----AAATGT---------T-CATCAAA----T---------GCGA--CATA--CA-AAATG---TAT---------T-A-T-AT-A----------AC--AAAA-G---ATACAATAC-AAG-TCGCACGTT--------AATATG-ATTTA----GG-TAATAAtttaggt
Alignments
lowQualScore : 11 11111 1111111 1
lowQualScore : 333 22 66 3 777 1 8 1 0 5 11111 2 6 4444 0 2 2 99 33 2 3 2 2 2 2 7777777 777 1 33 2 2 77777 33 2 8 5 0 1
lowQualScore : ... .. .. . ... . . . . . ..... . . .... . . . .. .. . . . . . . ....... ... . .. . . ..... .. . . . . .
lowQualScore : 777 33 99 2 222 6 0 0 4 0 88888 6 2 7777 5 2 2 22 11 2 2 4 4 4 5 7777777 222 1 44 9 9 11111 99 0 5 4 4 4
consensus : GACAAT-GAC--AA-TAT-T---T-TATT-AAGTAATNTAGGCCTCCGGCCCATAATACAACATGTAAA--TACATCATA----TAGA-G-CGAC--A--C-AAANTGAATATT-A-T-AC-ATT-----TATACAA-GTCAATATTACAG-AAT-TC-ACATAT-----CA--AAGTGAATNTAGG-TAATAA
Reference ( family-712 ) : GACANN-GAC--A--TAT-T---T-TATT-AAGTAATNTAGGCCTCCGGCCCATAATACAACATGTAAA--TACATCATA----TAGA-G-CGAC--A--C-AAANTGAATATT-A-T-AC-ATT-----TATACAA-GTCAATATTACAG-AAT-TC-ACATAT-----TA--AAGTGAATATAAG-TAATAA
gi|6201 : GACAAT-GAC--A--AATCT---T-TATT-AAGCAATGTAGGCCTCTGGCTCATAATACAAAATGT---------TCA-A----CAAA-G-CGACATA--C-AAAATGA--ATT-A-T-GT-A----------ACAA-AAC-ATACAATAA-TAT-TA-ACATGT-----CA--ATATG-ATTTAGG-TAATAA
gi|6202 : aatGACAAT-GAC--A--AAC-TCT-T-TATT-AAGCAATGTAGGCCTCTGGCCCATAATACAAAATGT---------TCA-A----CAAA-G-CAACATA--C-AAAATGGATTTT-A-TAACAAAA-----CATACAA---TAATATTA-----------ACATGT-----CA--ATATG-ATTTAGG-TAATAA
gi|6203 : aatGACAAT-GAC--A--AATCT---T-TATT-AAGCAATGTAGGCCTCTGGGCCATAATACAAAATGT---------TCA-A----CAAC-G-CAAC--A--TAAAAATGA--ATT-A-T-AT-A----------ACAA-AAC-ATACAATAA-TAT-TA-ACATGT-----CA--ATATG-ATTTAGG-TAATAA
gi|6204 : aatACAAT-GAC--A---AT-TCATT-TAT--AAACAATGTAGGCCTCCGGCTCATAATACAAAATGT-----T-CATCAAA----T----G-CGACATA--C-AAAATG--TATT-A-T-AT-A--------ACAAAA-G---ATACAATAC-AAG-TC-GCACGT-----TA--ATATG-ATTTAGG-TAATAA
gi|6205 : aattGACAAT-GAC--AAATGT-T---T-TATT-AAGTAATCTAGGCCTCCGGCCCATAATACA
gi|6206 : aatGACAAT-GAC--AA-TAT-G---TGTATT-CAGTAATTTAAGCCTCCGGCCCATAATACAACATGTAtaat
gi|6207 : aatGACAAT-GGC--AAATGT-T---G-TATT-AAGCAATCTAAGCCTCCGGCCGATAATACAcaa
gi|6208 : aatGACAAT-GACGAA--TGT-T---T-GATT-AAGCTATTTAGGCCTCTGGCCCATAATACATAAT-TACATTTATATCAAA----TATA-G-TGA--------AAAGTGAACAGT-GTT-AC-AAA-----TATAAAATGT--ATATTAtaat
gi|6209 : aatGACATA-GAC--A--TAT-T---T-TATT-AAGTATTATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTGAATATT-A-T-AC-AAT-----TATACAA-GTCAATATTACAT-AAT-TC-ACATAT-----CA--AAGTGAatagataaata
gi|6210 : aataGACAAT-GAC--AA-TAT-T---T-TATTCAAGTAATTTAGGCCACCGTCCCATAATACAA-ATATA
gi|6211 : aatGACAAC-GAC--AA-TAG-T---T-TATTCAAGTAATTTAGGCCACCGGCCCATAATACAAcacaaa
gi|6212 : aatGACAATAGAC--AA-TAT-T---T-TATTTGAGTAATGTAGGCCTCCGGCCCATAATAC-ATTTTTAAA--CACATGGTAAACGTGGA-ATCTA---A--C-AAA-TAAATATTCA-T-Aa
gi|6213 : aatGACAAT-GAC--A---AT-TCT-T-TATT-AAGCAATGTAAGCCTCCGGCCCATAAAACAAAATGT---------TCA-A----CAAATG-CGAC--ATTC-AAAAT--CTATT-A-T-AT-A----------ACAA----AACA-TACAATAATATCAACTCGT-----CA--ATATG-ATTTAGG-TAATAAatacgaacattataattt
gi|6214 : atGACAAT-GAC--AA-TAG-T---T-TATTCAAGTTATTTAGGCCACTGGCCCATAATACAA-ATATA
gi|6215 : atGACAAT-TAC--AAATGT-T---T-TATT-AAGCAATTCAGGCCTCCGACCCATAATACATAAT-TACATTTATATCATA----TATA-G-CGA--------AAAGTGAcacaaa
gi|6216 : at-GAC--AA-TAG-T---T-TATTCAAGTAATTTAGGCCACCGGCCCATAATACAAcaacagtgttacatataattagataaataacaa
gi|6217 : atgacaatagtttGACATA-GAC--A--GAT-T---T-TATT-AAGTGATATAGGCCTCTGGCCCAAAATACAACATACAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTGAATAGT-A-T-AC-ATTTCAAGTATACAA-GTCAATATTAa
gi|6218 : GACATA-GAC--A--TAT-T---T-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAACTGAATATT-A-T-AC-ATT-----TATACAA-GTCAATATTACAG-AAT-TC-ACATAT-----TC--AAGTGAATATAAGCTAATAA
gi|6219 : GACATA-GAC--A--TAT-T---T-TATT-AAGTAATATAGGCCTCCGGCCAAAAATACAACATGTAAA--TGCATCATA----TAGA-G-TGAC--T--C-AAATTGAATATT-A-T-AC-ATT-----TATA------CAATATTACAG-AAT-----CATAT-----CA-----TGAATAT
gi|6220 : GACATA-GAC--A--TAT-T---T-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTAAATATT-A-T-AC-ATT-----TATACAA-GTCAATATTACAG-AAT-TC-ACATAT-----TA--AAGTGA
gi|6221 : GACATA-GAC--A--TAT-T---T-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTAAATATT-A-T-AC-ATT-----TATACAA-GTCAATATTACAG-AAT-TC-ACATAT-----TA--AAGTGA
gi|6222 : GACATA-GAC--A--TAT-T---T-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTAAATATT-A-T-AC-ATT-----TATACAA-GTCAATATTACAG-AAT-TC-ACATAT-----TA--AAGTGA
gi|6223 : GACATA-GAC--A--TAT-T---T-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTAAATATT-A-T-AC-ATT-----TATACAA-GTCAATATTACAG-AAT-TC-ACATAT-----TA--AAGTGA
gi|6224 : -T---T-TATT-TAGGAATATAGGCCTCCAGCCCATAATACAAAATGT-----T-CAACAAA----TA-----CGAC--A--T-A--CT--ATATT-A-T-AC-A-T-----TAT--------GATATAACAC-AAC-AC-ACA-ATGAGAGTAACAAGTCAATATAA
gi|6225 : tgactc-GAC--A--TAT-T---T-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTGAATATT-A-T-AC-ATT-----TATACAA-GTCAATATTACAG-AAT-TC-ACATAT-----TC--AAGTGAATATAAGCTAATAAtttaggt
Alignments
lowQualScore : 11 11111 111111111 1
lowQualScore : 6666666 1 33 77 1 8 1 0 5 11111 2 6 4444 0 2 2 99 33 2 3 2 2 2 2 777777777 777 0 5555 2 2 2 3 8 1 0
lowQualScore : ....... . .. .. . . . . . ..... . . .... . . . .. .. . . . . . . ......... ... . .... . . . . . . .
lowQualScore : 6666666 7 00 00 6 0 0 4 0 88888 6 2 7777 5 2 2 22 11 2 2 4 4 4 5 666666666 333 1 6666 9 9 9 9 5 0 0
consensus : GACAAT-----GAC-AA-TAT--TT-TATT-AAGTAATNTAGGCCTCCGGCCCATAATACAACATGTAAA--TACATCATA----TAGA-G-CGAC--A--C-AAANTGAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATGTCAANGTGAATTTAGG-TAATAA
Reference ( family-712 ) : GACAAT-----GAC-AA-TAT--TT-TATT-AAGTAATNTAGGCCTCCGGCCCATAATACAACATGTAAA--TACATCATA----TAGA-G-CGAC--A--C-AAANTGAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATCAAAGTGAATNTAGG-TAATAA
gi|6201 : GACAAT-----GAC-AA--ATC-TT-TATT-AAGCAATGTAGGCCTCTGGCTCATAATACAAAATGT---------TCA-A----CAAA-G-CGACATA--C-AAAATGA--ATT-A-T-GT-A-----------ACAA-AAC-ATACAATA--A-T-AT-TA-ACATGTCAATATG-ATTTAGG-TAATAA
gi|6202 : aatGACAAT-----GAC-AA-ACTC-TT-TATT-AAGCAATGTAGGCCTCTGGCCCATAATACAAAATGT---------TCA-A----CAAA-G-CAACATA--C-AAAATGGATTTT-A-TAACAAAA-----C-ATACAA---TAATATTA--------------ACATGTCAATATG-ATTTAGG-TAATAA
gi|6203 : aatGACAAT-----GAC-AA--ATC-TT-TATT-AAGCAATGTAGGCCTCTGGGCCATAATACAAAATGT---------TCA-A----CAAC-G-CAAC--A--TAAAAATGA--ATT-A-T-AT-A-----------ACAA-AAC-ATACAATA--A-T-AT-TA-ACATGTCAATATG-ATTTAGG-TAATAA
gi|6204 : aatACAAT-----GAC-AA-T-TCATT-TA-T-AAACAATGTAGGCCTCCGGCTCATAATACAAAATGT-----T-CATCAAA----T----G-CGACATA--C-AAAATG--TATT-A-T-AT-A---------ACAAAA-G---ATACAATA--C-A-AG-TC-GCACGTTAATATG-ATTTAGG-TAATAA
gi|6205 : aattGACAAT-----GAC-AAATGT--TT-TATT-AAGTAATCTAGGCCTCCGGCCCATAATACA
gi|6206 : aatGACAAT-----GAC-AA-TAT--GTGTATT-CAGTAATTTAAGCCTCCGGCCCATAATACAACATGTAtaat
gi|6207 : aatGACAAT-----GGC-AAATGT--TG-TATT-AAGCAATCTAAGCCTCCGGCCGATAATACAcaa
gi|6208 : aatGACAAT-----GACGAA-TGT--TT-GATT-AAGCTATTTAGGCCTCTGGCCCATAATACATAAT-TACATTTATATCAAA----TATA-G-TGA--------AAAGTGAACAGT-GTT-AC-AAA-----T-ATAAAATGT--ATATTAtaat
gi|6209 : aatGACATA-----GAC-A--TAT--TT-TATT-AAGTATTATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTGAATATT-A-T-AC-AAT-----T-ATACAA-GTCAATATTACA--T-A-AT-TC-ACATATCAAAGTGAatagataaata
gi|6210 : aataGACAAT-----GAC-AA-TAT--TT-TATTCAAGTAATTTAGGCCACCGTCCCATAATACAA-ATATA
gi|6211 : aatGACAAC-----GAC-AA-TAG--TT-TATTCAAGTAATTTAGGCCACCGGCCCATAATACAAcacaaa
gi|6212 : aatGACAATA----GAC-AA-TAT--TT-TATTTGAGTAATGTAGGCCTCCGGCCCATAATAC-ATTTTTAAA--CACATGGTAAACGTGGA-ATCTA---A--C-AAA-TAAATATTCA-T-Aa
gi|6213 : aatGACAAT-----GAC-AA-TTC--TT-TATT-AAGCAATGTAAGCCTCCGGCCCATAAAACAAAATGT---------TCA-A----CAAATG-CGAC--ATTC-AAAAT--CTATT-A-T-AT-A-----------ACAA----AACA-TACA--ATA-ATATCAACTCGTCAATATG-ATTTAGG-TAATAAatacgaacattataattt
gi|6214 : atGACAAT-----GAC-AA-TAG--TT-TATTCAAGTTATTTAGGCCACTGGCCCATAATACAA-ATATA
gi|6215 : atGACAAT-----TAC-AAATGT--TT-TATT-AAGCAATTCAGGCCTCCGACCCATAATACATAAT-TACATTTATATCATA----TATA-G-CGA--------AAAGTGAcacaaa
gi|6216 : atGACAATAGTTTGAC-AA-TAG--TT-TATTCAAGTAATTTAGGCCACCGGCCCATAATACAAcaacagtgttacatataattagataaataacaa
gi|6217 : atGACATA-----GAC-AG--AT--TT-TATT-AAGTGATATAGGCCTCTGGCCCAAAATACAACATACAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTGAATAGT-A-T-AC-ATTTCAAGT-ATACAA-GTCAATATTAa
gi|6218 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAACTGAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTCAAGTGAATATAAGCTAATAA
gi|6219 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCAAAAATACAACATGTAAA--TGCATCATA----TAGA-G-TGAC--T--C-AAATTGAATATT-A-T-AC-ATT-----T-ATA------CAATATTACA--G-A-AT-----CATATCA---TGAATAT
gi|6220 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTAAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTAAAGTGA
gi|6221 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTAAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTAAAGTGA
gi|6222 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTAAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTAAAGTGA
gi|6223 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTAAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTAAAGTGA
gi|6224 : --TT-TATT-TAGGAATATAGGCCTCCAGCCCATAATACAAAATGT-----T-CAACAAA----TA-----CGAC--A--T-A--CT--ATATT-A-T-AC-ATTA----TGATATAA-CACAACA-CACAATG-AGAG-TA-ACAAGTCAATAT-AATTTAGG-
gi|6225 : tgactc-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTGAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTCAAGTGAATATAAGCTAATAA
Alignments
lowQualScore : 11 11111 111111111 1
lowQualScore : 6666666 1 33 77 1 8 1 0 5 11111 2 6 4444 0 2 2 99 33 2 3 2 2 2 2 777777777 777 0 5555 2 2 2 2 8 0
lowQualScore : ....... . .. .. . . . . . ..... . . .... . . . .. .. . . . . . . ......... ... . .... . . . . . .
lowQualScore : 6666666 7 00 00 6 0 0 4 0 88888 6 2 7777 5 2 2 22 11 2 2 4 4 4 5 666666666 333 1 6666 9 9 9 0 5 0
consensus : GACAAT-----GAC-AA-TAT--TT-TATT-AAGTAATNTAGGCCTCCGGCCCATAATACAACATGTAAA--TACATCATA----TAGA-G-CGAC--A--C-AAANTGAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATGTCAANGTGAATTTAGG-TAATAA
Reference ( family-712 ) : GACAAT-----GAC-AA-TAT--TT-TATT-AAGTAATNTAGGCCTCCGGCCCATAATACAACATGTAAA--TACATCATA----TAGA-G-CGAC--A--C-AAANTGAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATGTCAANGTGAATTTAGG-TAATAA
gi|6201 : GACAAT-----GAC-AA--ATC-TT-TATT-AAGCAATGTAGGCCTCTGGCTCATAATACAAAATGT---------TCA-A----CAAA-G-CGACATA--C-AAAATGA--ATT-A-T-GT-A-----------ACAA-AAC-ATACAATA--A-T-AT-TA-ACATGTCAATATG-ATTTAGG-TAATAA
gi|6202 : aatGACAAT-----GAC-AA-ACTC-TT-TATT-AAGCAATGTAGGCCTCTGGCCCATAATACAAAATGT---------TCA-A----CAAA-G-CAACATA--C-AAAATGGATTTT-A-TAACAAAA-----C-ATACAA---TAATATTA--------------ACATGTCAATATG-ATTTAGG-TAATAA
gi|6203 : aatGACAAT-----GAC-AA--ATC-TT-TATT-AAGCAATGTAGGCCTCTGGGCCATAATACAAAATGT---------TCA-A----CAAC-G-CAAC--A--TAAAAATGA--ATT-A-T-AT-A-----------ACAA-AAC-ATACAATA--A-T-AT-TA-ACATGTCAATATG-ATTTAGG-TAATAA
gi|6204 : aatACAAT-----GAC-AA-T-TCATT-TA-T-AAACAATGTAGGCCTCCGGCTCATAATACAAAATGT-----T-CATCAAA----T----G-CGACATA--C-AAAATG--TATT-A-T-AT-A---------ACAAAA-G---ATACAATA--C-A-AG-TC-GCACGTTAATATG-ATTTAGG-TAATAA
gi|6205 : aattGACAAT-----GAC-AAATGT--TT-TATT-AAGTAATCTAGGCCTCCGGCCCATAATACA
gi|6206 : aatGACAAT-----GAC-AA-TAT--GTGTATT-CAGTAATTTAAGCCTCCGGCCCATAATACAACATGTAtaat
gi|6207 : aatGACAAT-----GGC-AAATGT--TG-TATT-AAGCAATCTAAGCCTCCGGCCGATAATACAcaa
gi|6208 : aatGACAAT-----GACGAA-TGT--TT-GATT-AAGCTATTTAGGCCTCTGGCCCATAATACATAAT-TACATTTATATCAAA----TATA-G-TGA--------AAAGTGAACAGT-GTT-AC-AAA-----T-ATAAAATGT--ATATTAtaat
gi|6209 : aatGACATA-----GAC-A--TAT--TT-TATT-AAGTATTATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTGAATATT-A-T-AC-AAT-----T-ATACAA-GTCAATATTACA--T-A-AT-TC-ACATATCAAAGTGAatagataaata
gi|6210 : aataGACAAT-----GAC-AA-TAT--TT-TATTCAAGTAATTTAGGCCACCGTCCCATAATACAA-ATATA
gi|6211 : aatGACAAC-----GAC-AA-TAG--TT-TATTCAAGTAATTTAGGCCACCGGCCCATAATACAAcacaaa
gi|6212 : aatGACAATA----GAC-AA-TAT--TT-TATTTGAGTAATGTAGGCCTCCGGCCCATAATAC-ATTTTTAAA--CACATGGTAAACGTGGA-ATCTA---A--C-AAA-TAAATATTCA-T-Aa
gi|6213 : aatGACAAT-----GAC-AA-TTC--TT-TATT-AAGCAATGTAAGCCTCCGGCCCATAAAACAAAATGT---------TCA-A----CAAATG-CGAC--ATTC-AAAAT--CTATT-A-T-AT-A-----------ACAA----AACA-TACA--ATA-ATATCAACTCGTCAATATG-ATTTAGG-TAATAAatacgaacattataattt
gi|6214 : atGACAAT-----GAC-AA-TAG--TT-TATTCAAGTTATTTAGGCCACTGGCCCATAATACAA-ATATA
gi|6215 : atGACAAT-----TAC-AAATGT--TT-TATT-AAGCAATTCAGGCCTCCGACCCATAATACATAAT-TACATTTATATCATA----TATA-G-CGA--------AAAGTGAcacaaa
gi|6216 : atGACAATAGTTTGAC-AA-TAG--TT-TATTCAAGTAATTTAGGCCACCGGCCCATAATACAAcaacagtgttacatataattagataaataacaa
gi|6217 : atGACATA-----GAC-AG--AT--TT-TATT-AAGTGATATAGGCCTCTGGCCCAAAATACAACATACAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTGAATAGT-A-T-AC-ATTTCAAGT-ATACAA-GTCAATATTAa
gi|6218 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAACTGAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTCAAGTGAATATAAGCTAATAA
gi|6219 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCAAAAATACAACATGTAAA--TGCATCATA----TAGA-G-TGAC--T--C-AAATTGAATATT-A-T-AC-ATT-----T-ATA------CAATATTACA--G-A-AT-----CATATCA---TGAAT
gi|6220 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTAAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTAAAGTGAat
gi|6221 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTAAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTAAAGTGA
gi|6222 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTAAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTAAAGTGA
gi|6223 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTAAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTAAAGTGA
gi|6224 : --TT-TATT-TAGGAATATAGGCCTCCAGCCCATAATACAAAATGT-----T-CAACAAA----TA-----CGAC--A--T-A--CT--ATATT-A-T-AC-ATTA----TGATATAA-CACAACA-CACAATG-AGAG-TA-ACAAGTCAATAT-AATTTAGG-
gi|6225 : tgactc-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTGAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTCAAGTGAATATAAGCTAATAA
blockSeqs : ATAGTTT G AA CA G C G A ACATT A A AACG T T AT TT A A C T A A TTTCAAGT TGT ATG G A A T A C
blockSeqs : ATA . AA C . C G A ACATT A A . . . AT . . A . . . . TTATG AA AT . . . T A C
blockSeqs : AT . AA C . T G A AAA A T . . . . . . A . . . . AAC GT A . . . T A .
blockSeqs : AT . A . . C C C AAA A T . . . . . . G . . . . AAT GT C . . . A A .
blockSeqs : AT . A . . C T A AAA A T . . . . . . T . . . . ATT GT T . . . T A .
blockSeqs : AT . A . . . C C AAA A T . . . . . . A . . . . TTT GT G . . . A A .
blockSeqs : AT . A . . . T T AAA G T . . . . . . G . . . . TTT GT G . . . A A .
blockSeqs : AT . A . . . A A AAA A T . . . . . . T . . . . TTT GT G . . . A A
blockSeqs : AT . A . . . T A AAA A T . . . . . . C . . . . TTT GT G . . . A A
blockSeqs : TA . A . . . T C AAA A T . . . . . . T . . . . TTT CA G . . . A .
blockSeqs : AT . A . . . G C AAA A T . . . . . . T . . . . TTT GT G . . . T .
blockSeqs : AC . A . . . G C AAA A T . . . . . . T . . . . TTT G G . . . A .
blockSeqs : AT . A . . . T C . . A . . . . . . T . . . . . . . . . . . .
blockSeqs : AT . A . . . T C . . T . . . . . . T . . . . . .
blockSeqs : AT . G . . . T C . . . . . . . . . C . . . . . .
blockSeqs : TA . . . . . A C . . . . . . . . . T . . .
blockSeqs : TA . . . . . A A . . . . . . . . . .
blockSeqs : TA . . . . . A C
blockSeqs : TA . . . . . A .
blockSeqs : TA . . . . . A .
blockSeqs : TA . . . . . A
blockSeqs : TA . . . . . A
blockSeqs : . . . . . A
blockSeqs : . . . A
blockSeqCons : ** AAA** ** TTT******
originalCons : GACAAT-----GAC-AA-TAT--TT-TATT-AAGTAATNTAGGCCTCCGGCCCATAATACAACATGTAAA--TACATCATA----TAGA-G-CGAC--A--C-AAANTGAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATGTCAANGTGAATTTAGG-TAATAA
finalCons : GACAAT-----GAC-AA-TAT--TT-TATT-AAGTAATNTAGGCCTCCGGCCCATAATACAACATGTAAA--TACATCATA----TAGA-G-CGAC--A--C-AAANTGAATATT-A-T-AC-ATTT------ATACAA-GTCAATATTACA--G-A-AT-TC-ACATGTCAANGTGAATTTAGG-TAATAA
Alignments
lowQualScore : 11 11111 111111111 1
lowQualScore : 6666666 1 33 77 1 8 1 0 5 11111 2 6 4444 0 2 2 99 33 2 3 2 2 2 2 777777777 777 0 5555 2 2 2 2 8 0
lowQualScore : ....... . .. .. . . . . . ..... . . .... . . . .. .. . . . . . . ......... ... . .... . . . . . .
lowQualScore : 6666666 7 00 00 6 0 0 4 0 88888 6 2 7777 5 2 2 22 11 2 2 4 4 4 5 666666666 333 1 6666 9 9 9 0 5 0
consensus : GACAAT-----GAC-AA-TAT--TT-TATT-AAGTAATNTAGGCCTCCGGCCCATAATACAACATGTAAA--TACATCATA----TAGA-G-CGAC--A--C-AAANTGAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATGTCAANGTGAATTTAGG-TAATAA
Reference ( family-712 ) : GACAAT-----GAC-AA-TAT--TT-TATT-AAGTAATNTAGGCCTCCGGCCCATAATACAACATGTAAA--TACATCATA----TAGA-G-CGAC--A--C-AAANTGAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATGTCAANGTGAATTTAGG-TAATAA
gi|6201 : GACAAT-----GAC-AA--ATC-TT-TATT-AAGCAATGTAGGCCTCTGGCTCATAATACAAAATGT---------TCA-A----CAAA-G-CGACATA--C-AAAATGA--ATT-A-T-GT-A-----------ACAA-AAC-ATACAATA--A-T-AT-TA-ACATGTCAATATG-ATTTAGG-TAATAA
gi|6202 : aatGACAAT-----GAC-AA-ACTC-TT-TATT-AAGCAATGTAGGCCTCTGGCCCATAATACAAAATGT---------TCA-A----CAAA-G-CAACATA--C-AAAATGGATTTT-A-TAACAAAA-----C-ATACAA---TAATATTA--------------ACATGTCAATATG-ATTTAGG-TAATAA
gi|6203 : aatGACAAT-----GAC-AA--ATC-TT-TATT-AAGCAATGTAGGCCTCTGGGCCATAATACAAAATGT---------TCA-A----CAAC-G-CAAC--A--TAAAAATGA--ATT-A-T-AT-A-----------ACAA-AAC-ATACAATA--A-T-AT-TA-ACATGTCAATATG-ATTTAGG-TAATAA
gi|6204 : aatACAAT-----GAC-AA-T-TCATT-TA-T-AAACAATGTAGGCCTCCGGCTCATAATACAAAATGT-----T-CATCAAA----T----G-CGACATA--C-AAAATG--TATT-A-T-AT-A---------ACAAAA-G---ATACAATA--C-A-AG-TC-GCACGTTAATATG-ATTTAGG-TAATAA
gi|6205 : aattGACAAT-----GAC-AAATGT--TT-TATT-AAGTAATCTAGGCCTCCGGCCCATAATACA
gi|6206 : aatGACAAT-----GAC-AA-TAT--GTGTATT-CAGTAATTTAAGCCTCCGGCCCATAATACAACATGTAtaat
gi|6207 : aatGACAAT-----GGC-AAATGT--TG-TATT-AAGCAATCTAAGCCTCCGGCCGATAATACAcaa
gi|6208 : aatGACAAT-----GACGAA-TGT--TT-GATT-AAGCTATTTAGGCCTCTGGCCCATAATACATAAT-TACATTTATATCAAA----TATA-G-TGA--------AAAGTGAACAGT-GTT-AC-AAA-----T-ATAAAATGT--ATATTAtaat
gi|6209 : aatGACATA-----GAC-A--TAT--TT-TATT-AAGTATTATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTGAATATT-A-T-AC-AAT-----T-ATACAA-GTCAATATTACA--T-A-AT-TC-ACATATCAAAGTGAatagataaata
gi|6210 : aataGACAAT-----GAC-AA-TAT--TT-TATTCAAGTAATTTAGGCCACCGTCCCATAATACAA-ATATA
gi|6211 : aatGACAAC-----GAC-AA-TAG--TT-TATTCAAGTAATTTAGGCCACCGGCCCATAATACAAcacaaa
gi|6212 : aatGACAATA----GAC-AA-TAT--TT-TATTTGAGTAATGTAGGCCTCCGGCCCATAATAC-ATTTTTAAA--CACATGGTAAACGTGGA-ATCTA---A--C-AAA-TAAATATTCA-T-Aa
gi|6213 : aatGACAAT-----GAC-AA-TTC--TT-TATT-AAGCAATGTAAGCCTCCGGCCCATAAAACAAAATGT---------TCA-A----CAAATG-CGAC--ATTC-AAAAT--CTATT-A-T-AT-A-----------ACAA----AACA-TACA--ATA-ATATCAACTCGTCAATATG-ATTTAGG-TAATAAatacgaacattataattt
gi|6214 : atGACAAT-----GAC-AA-TAG--TT-TATTCAAGTTATTTAGGCCACTGGCCCATAATACAA-ATATA
gi|6215 : atGACAAT-----TAC-AAATGT--TT-TATT-AAGCAATTCAGGCCTCCGACCCATAATACATAAT-TACATTTATATCATA----TATA-G-CGA--------AAAGTGAcacaaa
gi|6216 : atGACAATAGTTTGAC-AA-TAG--TT-TATTCAAGTAATTTAGGCCACCGGCCCATAATACAAcaacagtgttacatataattagataaataacaa
gi|6217 : atGACATA-----GAC-AG--AT--TT-TATT-AAGTGATATAGGCCTCTGGCCCAAAATACAACATACAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTGAATAGT-A-T-AC-ATTTCAAGT-ATACAA-GTCAATATTAa
gi|6218 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAACTGAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTCAAGTGAATATAAGCTAATAA
gi|6219 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCAAAAATACAACATGTAAA--TGCATCATA----TAGA-G-TGAC--T--C-AAATTGAATATT-A-T-AC-ATT-----T-ATA------CAATATTACA--G-A-AT-----CATATCA---TGAAT
gi|6220 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTAAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTAAAGTGAat
gi|6221 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTAAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTAAAGTGA
gi|6222 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTAAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTAAAGTGA
gi|6223 : GACATA-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTAAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTAAAGTGA
gi|6224 : --TT-TATT-TAGGAATATAGGCCTCCAGCCCATAATACAAAATGT-----T-CAACAAA----TA-----CGAC--A--T-A--CT--ATATT-A-T-AC-ATTA----TGATATAA-CACAACA-CACAATG-AGAG-TA-ACAAGTCAATAT-AATTTAGG-
gi|6225 : tgactc-----GAC-A--TAT--TT-TATT-AAGTAATATAGGCCTCCGGCCCAAAATACAACATGTAAA--TACATCATA----TAGA-G-TGAC--A--C-AAATTGAATATT-A-T-AC-ATT-----T-ATACAA-GTCAATATTACA--G-A-AT-TC-ACATATTCAAGTGAATATAAGCTAATAA