lowQualScore : 5555555555555555555 1 11 1111111111 1 1
lowQualScore : 333 8888888 9999999999999999999 2 333 0 6 4444 22 2 1 6 6 55 8888888888 44444 6 1 3333 22 1 5555555 2 7
lowQualScore : ... ....... ................... . ... . . .... .. . . . . .. .......... ..... . . .... .. . ....... . .
lowQualScore : 777 9999999 3333333333333333333 0 333 7 7 2222 66 2 9 9 9 66 1111111111 55555 0 2 9999 55 4 9999999 5 0
consensus : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCACAAATAAA-C-TA------GTA--TT-TTTT--CCGTTTTAGAACATTATCGTCCATCTCACTATGTTGTACGACA----TATCG--CAGCTG-TTTCAGACCCGNAG-ACC----AT----TA-----CCTGTTCTTCGTGT----AATACA--TGTACACTATTTACATT-------GTACTATTCGTCTATTAGC
Reference ( gi|142734 ) : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCACAAATTAA-C-TAC-----GTA--TT-TTTT--CCGTTTTAGAACATTATCGTCCATCTCACTATTTTGTATGACA----TATCG--CAACTG-TATCAGACCCGTAC-ACC----AT----TA-----CCTGTCCTTCATGT----AATACA--TGTACACTATTTACATT-------GTACTATTCCTCAATTAGC
gi|142736 : GTTTTTAAGTTG---CATCGTTGTTTG-------CACTTCACAAATAAA-C-TAA-----GTACTTT-TTTT--CCGATTTAGAACATTATCGTCCATCTCATTATTTTGTATGGCA----TATCG--CAGCTG-TTTTAGACCCGTAG-ACA----AT----TA-----CATGTTCTTCTTGT----AATACA--TGTACACTACTTACCTT-------GTACTATT
gi|142737 : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCA-AAATTAA-CCTAA-----GTA--TT-TTTT--T-GCTTTAAAACATCATCGTCCATCTCACTATTTTGTAGCACA----TATCG--CAGCTG-TTTTAGACTCGTAG-ACC----AT----TA-----CCTGTTCTCCATGT----AATACA--TGTATACTTTTTACATT-------GTTCTAATCGTCTATTAGCtgcatgttagcac
gi|142738 : GTTTTTAAGTTT---TACCGTTGTTTA-------CACTTCACAAA--AA---TG------GTA--TT-TTTT--CCGTTTTAGAACATTATCATCAATCTCACTATTTTGTATGACA-------CGGTCAGCTG-TTTCAGACCCGTAG-ACC----AT----TA-----GTTGTTCTTTATGTGTTGGATACA--TGTACACTATATACATT-------GTATTATTCGTCTATTA
gi|142733 : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCACAAATAAA-C-TAA-------A--TT-TTTG----GCTTTAGAACATTATCGTCCATCTCACTATGTTGTTTGACA----AATCG--CATCTG-TTTCAGATCCGTAG-ACC-----T----TT-----CCTGTTCTTCGTGT----AAATCA--TGTACAATACTTACAAT-------GTACTATTCGTCTATTAGC
gi|142739 : GTTTTTAAATTG---TATCGTTGTTAA-------CACTTCACAAAT-AA-C-TAA-----GTA--TTGTTTT--CTGCTTTAGAACATTATCG--------ACAATTTTGTATGACAGACATATCG--CAGCTG-TTTGAGACCCGTAG-ACC----AT----TA-----ACTGTTCTTAATGT----AATACG--TGTACAATATTTACATT-------GTACTATTCATCTATTA
gi|142732 : GTTTTTAAGTTG---TATTGTTGTTAA-------CACTTCACAAATCAA-G-AA-------TA--TT-T-----CCGTTTTAGAACATTATCATCCATCTCACTATGTTGTATGAGA----TGTTT--CAGCTG-TTTCTGACCTGAAT-ACC----AA----TA-----CCTGTTCTTCATGT----AATACA--TGTACAATATTTACATT-------GTACTATTCGACTATTAAC
gi|142740 : GTTTTTTAGTTG---TATCGTT-----------------------TT------------------TT-TTTT--ACGTTATAGAACATTATCG-CTATCTTACTATTTTGTATGACA----TATCG--CAGCTG-TTTCAGACCCGTAG-ACC----AT----TA-----CCTGTTCTTCATGT----AATACG--TGTACAATATTTACATT-------GTACTATTCCTCTATTAGCacac
gi|142742 : GTTTTTAAGTTG---TATCGTTGTTT
gi|142735 : GTTTTTAAGTTA---TATCGTTGTTTA-------CACTTCACAA--TAA-----------AGA--AT-GTTT--CCGTTTAAGAACATTATCGTCCATCTCACTATGATGTATGACA----AAACG--CAGCTG-TTTCAGACCCGAAG-ACC----AG----CA-----CCTGTTTTTCATGT----AATACA--TGTACAATATTATCATTTATTTACATACTGTTCGACTATTAGCtagaacattatcgttcatctcactattatgcatgacatatcgcagctgtttcagacacgtagaacattacctgttcttcatagaatacatgtacactattaacattgtactattcctctgttagc
gi|142741 : GTTTTTAGGTTA---CATCTTGGTTAA-------CACTTTACAAAT-AA-----------GTT--TT-ATTT--TCGTTTTAGAACATTAGTATCCATCTCACTATGCTGTACGACA----TATCG--CAACTG-TTTCAG-TCAGAAG-ACC----TTAGGCTA-----CCTATTCTTCGTGT----AATACA--TGTACACTACTTACATT-------GTACTATTCGTCTATTGGCacgc
gi|142743 : GTTTTTAAGTAA---CATC-TTGGTTAAAATTAGCACTTTACAAATAAA-----------GTT--TT-TTTT--TCGTTTTAGAACATTAGTATCCATCTTACTATGCTGTACGACA----TATCG--CAACTG-TTTCAGACCAGAAT-ACC----TTAGGCTA-----CCTATTCTTTGTGT----AATACA--TGTACACTACTTACATT-------GTTCTATTCGTCac
gi|142745 : GTTTTTAAGTTA---CATTGTTGTTAA-------CACTAAACAAATGAA-G-TGTTTTTTGT---TT-TTTT--TCGTTTTAGAACATTA------ATATCACTATATTGTACGACA----TATTG--CAGCTG-TTTCAGACCCA-ATGACC----AT----TAGGCTACCTATTCTTCGTGT----AATACA--TGTACACTACTTACTTT-------GTACTTTTtgtcgcac
gi|142744 : GTTTATAAGCTA---CATCTTAATTAA-------CACTTTGCAAAT--A----AT-----GTT--TT-ATTT--TCGTTTTAGAACATTA--GT--ATC-CACTATGCTGTACGACA----TATCG--CAACTG-TTTCAGACCCGAAG-ACCTTAGGT----TA-----CCTATTCTTTGTGT----AATACA--TGAACACTACTTACATT-------GTACTTTTCGTCTATCGGCtg
gi|142746 : GTTTTTAAGTTA---CATC-TTGGTTAG------CACTTTACAAATAAA-----------GTT--TT-ATTT--TCATTTAAGAATATTAGTATCCATATCACTATGCTGTACGGCA----TATCG--CGACC----TTAGGC--------------------TA-----CCTATTCTTC-TAT----AATACA--TGTACACTACTTACATT-------GTACAATTCGTCTATCAGCac
gi|142731 : GTTTTTAAGTTG---TATCGTTGTTTA-------TGCTTCACAAATAAA-C-AAA-----GTA--TT-TTTTCCCCGTTTTAGAATATTATac
gi|142747 : GCTTTTAAGCTG---TATCGTTGTTTA-------CACGTCACAAAT--A-C-TAA-----GTA--TT-TTTC--C
gi|142748 : TTTTAAGTTG---TATCGTTGGTTA-------CACTTCACAAATAAA-----------GAA--TG-TTTC--CC-TTTTAGAACATTATCGTCCATCTCACTATGTTGTATAACA----TATCG--CAG-TGTTTTCAGACCCGAAG-ACC----AA----TA-----CCTGTTCTTCATGT----AATACA--TGTACAATATTTACATT-------GTACTATTCGACTATTAGat
gi|142749 : TAAGTCGGTATACTGTGGCACA-------TACTTAACAAATAAAGC-T------------TT-ATTT--TCGGTTTAGAACATTAGTATCCATCTCACTATGCTGTACGACA----TATCG--CAACTG-TTTCAGACCCGAAG-ACCTTAGAC----TA-----CCTATTCTTCGTGT----AATACA--TGTACACTACTTACATT-------ATACTATTCGTCTATCGGC
gi|142750 : GTTG---TATCGTTATTTA-------CACTTCACAAATAAA-G-AAT-----GC--------TT--CCGTTTTAGAACATTATCGTCCATCTCACTATGTTGTATGACA----TATTG--CAGCTG-TTTCAGAACCGAAG-ACC----AA----TA-----CCTGTTCTTCGTGT----AAAACA--TGTACAGAATTTACATT-------GTACTATTCGACTATTAGCac
gi|142751 : TTA-------CACTTCATAAATAAA-G-AAA-----GT--------TT--CCGTTTTAGAACATTATCGTCCATCTCACTTTGTTGTATGACA----TATCG--CAGCTG-TTTCAGAACCGAAG-ACC----AA----TA-----CCTGTTCTCCGTGT----AATACA--TTTACAATATTTACAAT-------GTACTATTCGACTATTAGCacac
gi|142752 : T-TTTT--GCGTTTTAGAATATTATCGTCCATCTCATTATTTAGTATGACA----TATCG--CAGCTG-TTTCAGACTCGTAG-ACC----AT----TA-----CCTGTTCTTCATGT----ATTACA--TGTACAATATTTACATT-------GTAATATTCGTCTATTAGCaaac
gi|142742 : GTTTTAGAACATTATCGTTCATCTCACTATTATGCATGACA----TATCG--CAGCTG-TTTCAGACACGTAG-AAC----AT----TA-----CCTGTTCTTCATAG----AATACA--TGTACACTATTAACATT-------GTACTATTCCTCTGTTAGC
gi|142753 : gtttttaagttgtatcgttTCTCACTATGCTGTACGACA----TATCA--CAACAG-TTTCAGACCCGAAG-ACC----TTAGGCTA-----CCTATTCTTCGTGT----AATACATGTGTACACTTCTTACATT-------GTACTATTTGTCTATCGGC
gi|142754 : --CAGCTA-TTTCAGACCCGTAG-ACC----AT----TA-----CCTGTTCTTCATGT----AGTATA--TGTATGCTATTTACATT-------GTACTATTCGTCTATTAGCac
gi|142755 : -----CCTGTTCTTCGTGC----AATACA--TATACAATATATACCTT-------GTACTATTCGTCTATTAGC
Alignments
lowQualScore : 444444444444444444 22222222222
lowQualScore : 333 8888888 555555555555555555 1 444 0 0 22 22 1 1 11111111111 0 3333 22 0 5555555
lowQualScore : ... ....... .................. . ... . . .. .. . . ........... . .... .. . .......
lowQualScore : 555 5555555 333333333333333333 9 333 2 1 22 55 8 0 00000000000 9 7777 44 9 7777777
consensus : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCACAAATAAA-C-T-A------GTA--TT-TTTT--CCGTTTTAGAACATTATCGTCCATCTCACTATGTTGTAC-GACATATCG--CAGCTG-TTTCAGACCCGNAGACC----AT-----TACCTGTTCTTCGTGT----AATACA--TGTACACTATTTACATT-------GTACTATTCGTCTATTAGC
Reference ( family-711 ) : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCACAAATAAA-C-T-A------GTA--TT-TTTT--CCGTTTTAGAACATTATCGTCCATCTCACTATGTTGTAC-GACATATCG--CAGCTG-TTTCAGACCCGNAGACC----AT-----TACCTGTTCTTCGTGT----AATACA--TGTACACTATTTACATT-------GTACTATTCGTCTATTAGC
gi|142731 : GTTTTTAAGTTG---TATCGTTGTTTA-------TGCTTCACAAATAAA-CAA-A------GTA--TT-TTTTCCCCGTTTTAGAATATTAT
gi|142732 : GTTTTTAAGTTG---TATTGTTGTTAA-------CACTTCACAAATCAA-G---A------ATA--TT-T-----CCGTTTTAGAACATTATCATCCATCTCACTATGTTGTAT-GAGATGTTT--CAGCTG-TTTCTGACCTGAATACC----AA-----TACCTGTTCTTCATGT----AATACA--TGTACAATATTTACATT-------GTACTATTCGACTATTAAC
gi|142733 : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCACAAATAAA-C-T-A------A-A--TT-TTTG----GCTTTAGAACATTATCGTCCATCTCACTATGTTGTTT-GACAAATCG--CATCTG-TTTCAGATCCGTAGACC-----T-----TTCCTGTTCTTCGTGT----AAATCA--TGTACAATACTTACAAT-------GTACTATTCGTCTATTAGCacac
gi|142734 : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCACAAATTAA-C-T-AC-----GTA--TT-TTTT--CCGTTTTAGAACATTATCGTCCATCTCACTATTTTGTAT-GACATATCG--CAACTG-TATCAGACCCGTACACC----AT-----TACCTGTCCTTCATGT----AATACA--TGTACACTATTTACATT-------GTACTATTCCTCAATTAGC
gi|142735 : GTTTTTAAGTTA---TATCGTTGTTTA-------CACTTCACAA-TAAA------------GAA--TG-TTT---CCGTTTAAGAACATTATCGTCCATCTCACTATGATGTAT-GACAAAACG--CAGCTG-TTTCAGACCCGAAGACC----AG-----CACCTGTTTTTCATGT----AATACA--TGTACAATATTATCATTTATTTACATACTGTTCGACTATTAGC
gi|142736 : GTTTTTAAGTTG---CATCGTTGTTTG-------CACTTCACAAATAAA-C-T-AA-----GTACTTT-TTTT--CCGATTTAGAACATTATCGTCCATCTCATTATTTTGTAT-GGCATATCG--CAGCTG-TTTTAGACCCGTAGACA----AT-----TACATGTTCTTCTTGT----AATACA--TGTACACTACTTACCTT-------GTACTATTTGCATGTTAGCacgc
gi|142737 : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCAAAATTAAC-C-TAA------GTA--TT-TTTT---TGCTTTAAAACATCATCGTCCATCTCACTATTTTGTAG-CACATATCG--CAGCTG-TTTTAGACTCGTAGACC----AT-----TACCTGTTCTCCATGT----AATACA--TGTATACTTTTTACATT-------GTTCTAATCGTCTATTAGCac
gi|142738 : GTTTTTAAGTTT---TACCGTTGTTTA-------CACTTCACAAA--AA---T-G------GTA--TT-TTTT--CCGTTTTAGAACATTATCATCAATCTCACTATTTTGTAT-GACA---CGGTCAGCTG-TTTCAGACCCGTAGACC----AT-----TAGTTGTTCTTTATGTGTTGGATACA--TGTACACTATATACATT-------GTATTATTCGTCTATTA
gi|142739 : GTTTTTAAATTG---TATCGTTGTTAA-------CACTTCACAAATAA--C-T-AA-----GTA--TTGTTTT--CTGCTTTAGAACATTATCGACAATTTTG-TATG----ACAGACATATCG--CAGCTG-TTTGAGACCCGTAGACC----AT-----TAACTGTTCTTAATGT----AATACG--TGTACAATATTTACATT-------GTACTATTCATCTATTA
gi|142740 : GTTTTTTAGTTG---TATCGTT---------------TT---------------------------TT-TTTT--ACGTTATAGAACATTATCG-CTATCTTACTATTTTGTAT-GACATATCG--CAGCTG-TTTCAGACCCGTAGACC----AT-----TACCTGTTCTTCATGT----AATACG--TGTACAATATTTACATT-------GTACTATTCCTCTATTAGC
gi|142741 : GTTTTTAGGTTA---CATCTTGGTTAA-------CACTTTACAAATAA-------------GTT--TT-ATTT--TCGTTTTAGAACATTAGTATCCATCTCACTATGCTGTAC-GACATATCG--CAACTG-TTTCAG-TCAGAAGACC----TTAGGC-TACCTATTCTTCGTGT----AATACA--TGTACACTACTTACATT-------GTACTATTCGTCTATTGGC
gi|142742 : GTTTTTAAGTTG---TATCGTTGTTTac
gi|142742 : GTTTTAGAACATTATCGTTCATCTCACTATTATGCAT-GACATATCG--CAGCTG-TTTCAGACACGTAGAAC----AT-----TACCTGTTCTTCATAG----AATACA--TGTACACTATTAACATT-------GTACTATTCCTCTGTTAGCtagaacattatcgttcatctcactattatgcatgacatatcgcagctgtttcagacacgtagaacattacctgttcttcatagaatacatgtacactattaacattgtactattcctctgttagc
gi|142743 : gtttttaagttgtatcgttGTTTTTAAGTAA---CATC-TTGGTTAAAATTAGCACTTTACAAATAAA------------GTT--TT-TTTT--TCGTTTTAGAACATTAGTATCCATCTTACTATGCTGTAC-GACATATCG--CAACTG-TTTCAGACCAGAATACC----TTAGGC-TACCTATTCTTTGTGT----AATACA--TGTACACTACTTACATT-------GTTCTATTCGTCTGT
gi|142744 : GTTTATAAGCTA---CATCTTAATTAA-------CACTTTGCAAATAA----T--------GTT--TT-ATTT--TCGTTTTAGAACATTA--GT--ATC-CACTATGCTGTAC-GACATATCG--CAACTG-TTTCAGACCCGAAGACCTTAGGT-----TACCTATTCTTTGTGT----AATACA--TGAACACTACTTACATT-------GTACTTTTCGTCTATCGGCcgcac
gi|142745 : GTTTTTAAGTTA---CATTGTTGTTAA-------CACTAAACAAATGAA-G-T-GTTTTTTGT---TT-TTTT--TCGTTTTAGAACATTA------ATATCACTATATTGTAC-GACATATTG--CAGCTG-TTTCAGACCCAATGACC----ATTAGGCTACCTATTCTTCGTGT----AATACA--TGTACACTACTTACTTT-------GTACTTTTTGac
gi|142746 : GTTTTTAAGTTA---CATC-TTGGTTAG------CACTTTACAAATAAA------------GTT--TT-ATTT--TCATTTAAGAATATTAGTATCCATATCACTATGCTGTAC-GGCATATCG--C-----------GACCT-TAGGC------------TACCTATTCTTC-TAT----AATACA--TGTACACTACTTACATT-------GTACAATTCGTCTATCAGC
gi|142747 : GCTTTTAAGCTG---TATCGTTGTTTA-------CACGTCACAAAT--A-C-TAA------GTA--TT-TTTC--Cac
gi|142748 : TTTTAAGTTG---TATCGTTGGTTA-------CACTTCACAAATAAA------------GAA--TG-TTTC--CC-TTTTAGAACATTATCGTCCATCTCACTATGTTGTAT-AACATATCG--CAG-TGTTTTCAGACCCGAAGACC----AA-----TACCTGTTCTTCATGT----AATACA--TGTACAATATTTACATT-------GTACTATTCGACTATTAGat
gi|142749 : TAAGTCGGTATACTGTGGCACA-------TACTTAACAAATAAAGC-T-------------TT-ATTT--TCGGTTTAGAACATTAGTATCCATCTCACTATGCTGTAC-GACATATCG--CAACTG-TTTCAGACCCGAAGACCTTAGAC-----TACCTATTCTTCGTGT----AATACA--TGTACACTACTTACATT-------ATACTATTCGTCTATCGGC
gi|142750 : GTTG---TATCGTTATTTA-------CACTTCACAAATAAA------------GAA--TG-CTT---CCGTTTTAGAACATTATCGTCCATCTCACTATGTTGTAT-GACATATTG--CAGCTG-TTTCAGAACCGAAGACC----AA-----TACCTGTTCTTCGTGT----AAAACA--TGTACAGAATTTACATT-------GTACTATTCGACTATTAGCac
gi|142751 : TTA-------CACTTCATAAATAAA-G-A-AA-----GT--------TT--CCGTTTTAGAACATTATCGTCCATCTCACTTTGTTGTAT-GACATATCG--CAGCTG-TTTCAGAACCGAAGACC----AA-----TACCTGTTCTCCGTGT----AATACA--TTTACAATATTTACAAT-------GTACTATTCGACTATTAGCacac
gi|142752 : T-TTTT--GCGTTTTAGAATATTATCGTCCATCTCATTATTTAGTAT-GACATATCG--CAGCTG-TTTCAGACTCGTAGACC----AT-----TACCTGTTCTTCATGT----ATTACA--TGTACAATATTTACATT-------GTAATATTCGTCTATTAGCaaac
gi|142753 : TCTCACTATGCTGTAC-GACATATCA--CAACAG-TTTCAGACCCGAAGACC----TTAGGC-TACCTATTCTTCGTGT----AATACATGTGTACACTTCTTACATT-------GTACTATTTGTCTATCGGC
gi|142754 : --CAGCTA-TTTCAGACCCGTAGACC----AT-----TACCTGTTCTTCATGT----AGTATA--TGTATGCTATTTACATT-------GTACTATTCGTCTATTAGCac
gi|142755 : CCTGTTCTTCGTGC----AATACA--TATACAATATATACCTT-------GTACTATTCGTCTATTAGC
Alignments
lowQualScore : 444444444444444444 22222222222
lowQualScore : 333 8888888 555555555555555555 1 444 0 0 22 22 1 1 11111111111 0 3333 22 0 5555555
lowQualScore : ... ....... .................. . ... . . .. .. . . ........... . .... .. . .......
lowQualScore : 555 5555555 333333333333333333 9 333 2 1 22 55 8 0 00000000000 9 7777 44 9 7777777
consensus : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCACAAATAAA-C-T-A------GTA--TT-TTTT--CCGTTTTAGAACATTATCGTCCATCTCACTATGTTGTAC-GACATATCG--CAGCTG-TTTCAGACCCGNAGACC----AT-----TACCTGTTCTTCGTGT----AATACA--TGTACACTATTTACATT-------GTACTATTCGTCTATTAGC
Reference ( family-711 ) : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCACAAATAAA-C-T-A------GTA--TT-TTTT--CCGTTTTAGAACATTATCGTCCATCTCACTATGTTGTAC-GACATATCG--CAGCTG-TTTCAGACCCGNAGACC----AT-----TACCTGTTCTTCGTGT----AATACA--TGTACACTATTTACATT-------GTACTATTCGTCTATTAGC
gi|142731 : GTTTTTAAGTTG---TATCGTTGTTTA-------TGCTTCACAAATAAA-CAA-A------GTA--TT-TTTTCCCCGTTTTAGAATATTAT
gi|142732 : GTTTTTAAGTTG---TATTGTTGTTAA-------CACTTCACAAATCAA-G---A------ATA--TT-T-----CCGTTTTAGAACATTATCATCCATCTCACTATGTTGTAT-GAGATGTTT--CAGCTG-TTTCTGACCTGAATACC----AA-----TACCTGTTCTTCATGT----AATACA--TGTACAATATTTACATT-------GTACTATTCGACTATTAAC
gi|142733 : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCACAAATAAA-C-T-A------A-A--TT-TTTG----GCTTTAGAACATTATCGTCCATCTCACTATGTTGTTT-GACAAATCG--CATCTG-TTTCAGATCCGTAGACC-----T-----TTCCTGTTCTTCGTGT----AAATCA--TGTACAATACTTACAAT-------GTACTATTCGTCTATTAGCacac
gi|142734 : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCACAAATTAA-C-T-AC-----GTA--TT-TTTT--CCGTTTTAGAACATTATCGTCCATCTCACTATTTTGTAT-GACATATCG--CAACTG-TATCAGACCCGTACACC----AT-----TACCTGTCCTTCATGT----AATACA--TGTACACTATTTACATT-------GTACTATTCCTCAATTAGC
gi|142735 : GTTTTTAAGTTA---TATCGTTGTTTA-------CACTTCACAA-TAAA------------GAA--TG-TTT---CCGTTTAAGAACATTATCGTCCATCTCACTATGATGTAT-GACAAAACG--CAGCTG-TTTCAGACCCGAAGACC----AG-----CACCTGTTTTTCATGT----AATACA--TGTACAATATTATCATTTATTTACATACTGTTCGACTATTAGC
gi|142736 : GTTTTTAAGTTG---CATCGTTGTTTG-------CACTTCACAAATAAA-C-T-AA-----GTACTTT-TTTT--CCGATTTAGAACATTATCGTCCATCTCATTATTTTGTAT-GGCATATCG--CAGCTG-TTTTAGACCCGTAGACA----AT-----TACATGTTCTTCTTGT----AATACA--TGTACACTACTTACCTT-------GTACTATTTGCATGTTAGCacgc
gi|142737 : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCAAAATTAAC-C-TAA------GTA--TT-TTTT---TGCTTTAAAACATCATCGTCCATCTCACTATTTTGTAG-CACATATCG--CAGCTG-TTTTAGACTCGTAGACC----AT-----TACCTGTTCTCCATGT----AATACA--TGTATACTTTTTACATT-------GTTCTAATCGTCTATTAGCac
gi|142738 : GTTTTTAAGTTT---TACCGTTGTTTA-------CACTTCACAAA--AA---T-G------GTA--TT-TTTT--CCGTTTTAGAACATTATCATCAATCTCACTATTTTGTAT-GACA---CGGTCAGCTG-TTTCAGACCCGTAGACC----AT-----TAGTTGTTCTTTATGTGTTGGATACA--TGTACACTATATACATT-------GTATTATTCGTCTATTA
gi|142739 : GTTTTTAAATTG---TATCGTTGTTAA-------CACTTCACAAATAA--C-T-AA-----GTA--TTGTTTT--CTGCTTTAGAACATTATCGACAATTTTG-TATG----ACAGACATATCG--CAGCTG-TTTGAGACCCGTAGACC----AT-----TAACTGTTCTTAATGT----AATACG--TGTACAATATTTACATT-------GTACTATTCATCTATTA
gi|142740 : GTTTTTTAGTTG---TATCGTT---------------TT---------------------------TT-TTTT--ACGTTATAGAACATTATCG-CTATCTTACTATTTTGTAT-GACATATCG--CAGCTG-TTTCAGACCCGTAGACC----AT-----TACCTGTTCTTCATGT----AATACG--TGTACAATATTTACATT-------GTACTATTCCTCTATTAGC
gi|142741 : GTTTTTAGGTTA---CATCTTGGTTAA-------CACTTTACAAATAA-------------GTT--TT-ATTT--TCGTTTTAGAACATTAGTATCCATCTCACTATGCTGTAC-GACATATCG--CAACTG-TTTCAG-TCAGAAGACC----TTAGGC-TACCTATTCTTCGTGT----AATACA--TGTACACTACTTACATT-------GTACTATTCGTCTATTGGC
gi|142742 : GTTTTTAAGTTG---TATCGTTGTTTac
gi|142742 : GTTTTAGAACATTATCGTTCATCTCACTATTATGCAT-GACATATCG--CAGCTG-TTTCAGACACGTAGAAC----AT-----TACCTGTTCTTCATAG----AATACA--TGTACACTATTAACATT-------GTACTATTCCTCTGTTAGCtagaacattatcgttcatctcactattatgcatgacatatcgcagctgtttcagacacgtagaacattacctgttcttcatagaatacatgtacactattaacattgtactattcctctgttagc
gi|142743 : gtttttaagttgtatcgttGTTTTTAAGTAA---CATC-TTGGTTAAAATTAGCACTTTACAAATAAA------------GTT--TT-TTTT--TCGTTTTAGAACATTAGTATCCATCTTACTATGCTGTAC-GACATATCG--CAACTG-TTTCAGACCAGAATACC----TTAGGC-TACCTATTCTTTGTGT----AATACA--TGTACACTACTTACATT-------GTTCTATTCGTCTGT
gi|142744 : GTTTATAAGCTA---CATCTTAATTAA-------CACTTTGCAAATAA----T--------GTT--TT-ATTT--TCGTTTTAGAACATTA--GT--ATC-CACTATGCTGTAC-GACATATCG--CAACTG-TTTCAGACCCGAAGACCTTAGGT-----TACCTATTCTTTGTGT----AATACA--TGAACACTACTTACATT-------GTACTTTTCGTCTATCGGCcgcac
gi|142745 : GTTTTTAAGTTA---CATTGTTGTTAA-------CACTAAACAAATGAA-G-T-GTTTTTTGT---TT-TTTT--TCGTTTTAGAACATTA------ATATCACTATATTGTAC-GACATATTG--CAGCTG-TTTCAGACCCAATGACC----ATTAGGCTACCTATTCTTCGTGT----AATACA--TGTACACTACTTACTTT-------GTACTTTTTGac
gi|142746 : GTTTTTAAGTTA---CATC-TTGGTTAG------CACTTTACAAATAAA------------GTT--TT-ATTT--TCATTTAAGAATATTAGTATCCATATCACTATGCTGTAC-GGCATATCG--C-----------GACCT-TAGGC------------TACCTATTCTTC-TAT----AATACA--TGTACACTACTTACATT-------GTACAATTCGTCTATCAGC
gi|142747 : GCTTTTAAGCTG---TATCGTTGTTTA-------CACGTCACAAAT--A-C-TAA------GTA--TT-TTTC--Cac
gi|142748 : TTTTAAGTTG---TATCGTTGGTTA-------CACTTCACAAATAAA------------GAA--TG-TTTC--CC-TTTTAGAACATTATCGTCCATCTCACTATGTTGTAT-AACATATCG--CAG-TGTTTTCAGACCCGAAGACC----AA-----TACCTGTTCTTCATGT----AATACA--TGTACAATATTTACATT-------GTACTATTCGACTATTAGat
gi|142749 : TAAGTCGGTATACTGTGGCACA-------TACTTAACAAATAAAGC-T-------------TT-ATTT--TCGGTTTAGAACATTAGTATCCATCTCACTATGCTGTAC-GACATATCG--CAACTG-TTTCAGACCCGAAGACCTTAGAC-----TACCTATTCTTCGTGT----AATACA--TGTACACTACTTACATT-------ATACTATTCGTCTATCGGC
gi|142750 : GTTG---TATCGTTATTTA-------CACTTCACAAATAAA------------GAA--TG-CTT---CCGTTTTAGAACATTATCGTCCATCTCACTATGTTGTAT-GACATATTG--CAGCTG-TTTCAGAACCGAAGACC----AA-----TACCTGTTCTTCGTGT----AAAACA--TGTACAGAATTTACATT-------GTACTATTCGACTATTAGCac
gi|142751 : TTA-------CACTTCATAAATAAA-G-A-AA-----GT--------TT--CCGTTTTAGAACATTATCGTCCATCTCACTTTGTTGTAT-GACATATCG--CAGCTG-TTTCAGAACCGAAGACC----AA-----TACCTGTTCTCCGTGT----AATACA--TTTACAATATTTACAAT-------GTACTATTCGACTATTAGCacac
gi|142752 : T-TTTT--GCGTTTTAGAATATTATCGTCCATCTCATTATTTAGTAT-GACATATCG--CAGCTG-TTTCAGACTCGTAGACC----AT-----TACCTGTTCTTCATGT----ATTACA--TGTACAATATTTACATT-------GTAATATTCGTCTATTAGCaaac
gi|142753 : TCTCACTATGCTGTAC-GACATATCA--CAACAG-TTTCAGACCCGAAGACC----TTAGGC-TACCTATTCTTCGTGT----AATACATGTGTACACTTCTTACATT-------GTACTATTTGTCTATCGGC
gi|142754 : --CAGCTA-TTTCAGACCCGTAGACC----AT-----TACCTGTTCTTCATGT----AGTATA--TGTATGCTATTTACATT-------GTACTATTCGTCTATTAGCac
gi|142755 : CCTGTTCTTCGTGC----AATACA--TATACAATATATACCTT-------GTACTATTCGTCTATTAGC
blockSeqs : GTA AAATTAG AGTGTTTTTTGT G C CA GT T T ATTAGGC GTTG TG TATTTAC
blockSeqs : . G ACTAAGTACT . C T . . T TTAGGC . . .
blockSeqs : . . ACTACGTA . C T . . A TTAGGC . . .
blockSeqs : . . CCTAAGTA . C T . . T TTAGGT . . .
blockSeqs : . . ACTAAGTA . C T . . T TTAGAC . . .
blockSeqs : . . CTAAGTA . C G . . T TTAGGC . . .
blockSeqs : . . AGAAAGT . A T . . T AT . . .
blockSeqs : . . AGAATA . T T . . T AG . . .
blockSeqs : . . ACTAAA . T C . . A AT . . .
blockSeqs : . . ATGGTA . T T . . T AT . . .
blockSeqs : . . AGAA . T C . . A AT . . .
blockSeqs : . . AGTT . T C . . A AT . . .
blockSeqs : . . TGTT . C C . . A AT . . .
blockSeqs : . . AGTT . C C . . T AT . . .
blockSeqs : . . AGAA . T T . . A AA . . .
blockSeqs : . . AGCT . C C . . A AA . . .
blockSeqs : . . AGAA . C T . . A AA . . .
blockSeqs : . . GTT . G T . . A AT . . .
blockSeqs : . . . . . T . . T AT . . .
blockSeqs : . . C . . A T . . .
blockSeqs : . . T . . . .
blockSeqs : . . .
blockSeqCons : ATGTA************* C**
originalCons : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCACAAATAAA-C-T-A------GTA--TT-TTTT--CCGTTTTAGAACATTATCGTCCATCTCACTATGTTGTAC-GACATATCG--CAGCTG-TTTCAGACCCGNAGACC----AT-----TACCTGTTCTTCGTGT----AATACA--TGTACACTATTTACATT-------GTACTATTCGTCTATTAGC
finalCons : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCACAAATAAATGTA-------------TT-TTTTC--CGTTTTAGAACATTATCGTCCATCTCACTATGTTGTAC-GACATATCG--CAGCTG-TTTCAGACCCGNAGACC----AT-----TACCTGTTCTTCGTGT----AATACA--TGTACACTATTTACATT-------GTACTATTCGTCTATTAGC
Alignments
lowQualScore : 3333333333333333 22222222222
lowQualScore : 333 8888888 2 22 9999999999999999 55555 1 6666 0 0 22 22 1 1 11111111111 0 3333 22 0 5555555
lowQualScore : ... ....... . .. ................ ..... . .... . . .. .. . . ........... . .... .. . .......
lowQualScore : 555 5555555 0 88 1111111111111111 55555 8 7777 2 1 22 55 8 0 00000000000 9 7777 44 9 7777777
consensus : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCACAAAT-A--A---A------------G-TA--TT-TTTT--CCGTTTTAGAACATTATCGTCCATCTCACTATGTTGTAC-GACATATCG--CAGCTG-TTTCAGACCCGNAGACC----AT-----TACCTGTTCTTCGTGT----AATACA--TGTACACTATTTACATT-------GTACTATTCGTCTATTAGC
Reference ( family-711 ) : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCACAAAT-A--A---A--------T---G-TA--TT-TTTT--CCGTTTTAGAACATTATCGTCCATCTCACTATGTTGTAC-GACATATCG--CAGCTG-TTTCAGACCCGNAGACC----AT-----TACCTGTTCTTCGTGT----AATACA--TGTACACTATTTACATT-------GTACTATTCGTCTATTAGC
gi|142731 : GTTTTTAAGTTG---TATCGTTGTTTA-------TGCTTCACAAAT-A--A---A--------CAAAG-TA--TT-TTTTCCCCGTTTTAGAATATTAT
gi|142732 : GTTTTTAAGTTG---TATTGTTGTTAA-------CACTTCACAAAT-C--A---A------------G-AA--TA-TTT---CCGTTTTAGAACATTATCATCCATCTCACTATGTTGTAT-GAGATGTTT--CAGCTG-TTTCTGACCTGAATACC----AA-----TACCTGTTCTTCATGT----AATACA--TGTACAATATTTACATT-------GTACTATTCGACTATTAAC
gi|142733 : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCACAAAT-A--A---AC-------T---A-AA--TT-TTTG----GCTTTAGAACATTATCGTCCATCTCACTATGTTGTTT-GACAAATCG--CATCTG-TTTCAGATCCGTAGACC-----T-----TTCCTGTTCTTCGTGT----AAATCA--TGTACAATACTTACAAT-------GTACTATTCGTCTATTAGCacac
gi|142734 : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCACAAATTA--ACT-A--------C---G-TA--TT-TTTT--CCGTTTTAGAACATTATCGTCCATCTCACTATTTTGTAT-GACATATCG--CAACTG-TATCAGACCCGTACACC----AT-----TACCTGTCCTTCATGT----AATACA--TGTACACTATTTACATT-------GTACTATTCCTCAATTAGC
gi|142735 : GTTTTTAAGTTA---TATCGTTGTTTA-------CACTTCACAA-T-A--A---A------------G-AA--TG-TTT---CCGTTTAAGAACATTATCGTCCATCTCACTATGATGTAT-GACAAAACG--CAGCTG-TTTCAGACCCGAAGACC----AG-----CACCTGTTTTTCATGT----AATACA--TGTACAATATTATCATTTATTTACATACTGTTCGACTATTAGC
gi|142736 : GTTTTTAAGTTG---CATCGTTGTTTG-------CACTTCACAAAT-A--A---A--------CTAAG-TACTTT-TTTT--CCGATTTAGAACATTATCGTCCATCTCATTATTTTGTAT-GGCATATCG--CAGCTG-TTTTAGACCCGTAGACA----AT-----TACATGTTCTTCTTGT----AATACA--TGTACACTACTTACCTT-------GTACTATTTGCATGTTAGCacgc
gi|142737 : GTTTTTAAGTTG---TATCGTTGTTTA-------CACTTCAAAATT-A--ACCTA--------A---G-TA--TT-TTTT--T-GCTTTAAAACATCATCGTCCATCTCACTATTTTGTAG-CACATATCG--CAGCTG-TTTTAGACTCGTAGACC----AT-----TACCTGTTCTCCATGT----AATACA--TGTATACTTTTTACATT-------GTTCTAATCGTCTATTAGCac
gi|142738 : GTTTTTAAGTTT---TACCGTTGTTTA-------CACTTCACAAA-----A---A--------T---GGTA--TT-TTTT--CCGTTTTAGAACATTATCATCAATCTCACTATTTTGTAT-GACA---CGGTCAGCTG-TTTCAGACCCGTAGACC----AT-----TAGTTGTTCTTTATGTGTTGGATACA--TGTACACTATATACATT-------GTATTATTCGTCTATTA
gi|142739 : GTTTTTAAATTG---TATCGTTGTTAA-------CACTTCACAAAT-A--A---C--------TAA-G-TA--TTGTTTT--CTGCTTTAGAACATTATCGACAATTTTG-TATG----ACAGACATATCG--CAGCTG-TTTGAGACCCGTAGACC----AT-----TAACTGTTCTTAATGT----AATACG--TGTACAATATTTACATT-------GTACTATTCATCTATTA
gi|142740 : GTTTTTTAGTTG---TATCGTT---------------TT----------------------------------TT-TTTT--ACGTTATAGAACATTATCG-CTATCTTACTATTTTGTAT-GACATATCG--CAGCTG-TTTCAGACCCGTAGACC----AT-----TACCTGTTCTTCATGT----AATACG--TGTACAATATTTACATT-------GTACTATTCCTCTATTAGC
gi|142741 : GTTTTTAGGTTA---CATCTTGGTTAA-------CACTTTACAAAT-A--A----------------G-TT--TT-ATTT--TCGTTTTAGAACATTAGTATCCATCTCACTATGCTGTAC-GACATATCG--CAACTG-TTTCAG-TCAGAAGACC----TTAGGC-TACCTATTCTTCGTGT----AATACA--TGTACACTACTTACATT-------GTACTATTCGTCTATTGGC
gi|142742 : GTTTTTAAGTTG---TATCGTTGTTTac
gi|142742 : --------T---G-TA--TC-GTT-----GTTTTAGAACATTATCGTTCATCTCACTATTATGCAT-GACATATCG--CAGCTG-TTTCAGACACGTAGAAC----AT-----TACCTGTTCTTCATAG----AATACA--TGTACACTATTAACATT-------GTACTATTCCTCTGTTAGCtagaacattatcgttcatctcactattatgcatgacatatcgcagctgtttcagacacgtagaacattacctgttcttcatagaatacatgtacactattaacattgtactattcctctgttagc
gi|142743 : gtttttaagtGTTTTTAAGTAA---CATC-TTGGTTAAAATTAGCACTTTACAAAT-A--A---A------------G-TT--TT-TTTT--TCGTTTTAGAACATTAGTATCCATCTTACTATGCTGTAC-GACATATCG--CAACTG-TTTCAGACCAGAATACC----TTAGGC-TACCTATTCTTTGTGT----AATACA--TGTACACTACTTACATT-------GTTCTATTCGTCTGT
gi|142744 : GTTTATAAGCTA---CATCTTAATTAA-------CACTTTGCAAAT-A--A------------T---G-TT--TT-ATTT--TCGTTTTAGAACATTA--GT--ATC-CACTATGCTGTAC-GACATATCG--CAACTG-TTTCAGACCCGAAGACCTTAGGT-----TACCTATTCTTTGTGT----AATACA--TGAACACTACTTACATT-------GTACTTTTCGTCTATCGGCcgcac
gi|142745 : GTTTTTAAGTTA---CATTGTTGTTAA-------CACTAAACAAAT-G--A---AGTGTTTTTT---G-T---TT-TTTT--TCGTTTTAGAACATTA------ATATCACTATATTGTAC-GACATATTG--CAGCTG-TTTCAGACCCAATGACC----ATTAGGCTACCTATTCTTCGTGT----AATACA--TGTACACTACTTACTTT-------GTACTTTTTGac
gi|142746 : GTTTTTAAGTTA---CATC-TTGGTTAG------CACTTTACAAAT-A--A---A------------G-TT--TT-ATTT--TCATTTAAGAATATTAGTATCCATATCACTATGCTGTAC-GGCATATCG--C-----------GACCT-TAGGC------------TACCTATTCTTC-TAT----AATACA--TGTACACTACTTACATT-------GTACAATTCGTCTATCAGC
gi|142747 : GCTTTTAAGCTG---TATCGTTGTTTA-------CACGTCACAAAT-ACTA---A------------G-TA--TT-TTTC--Cac
gi|142748 : TTTTAAGTTG---TATCGTTGGTTA-------CACTTCACAAAT-A--A---A------------G-AA--TG-TTTC--CC-TTTTAGAACATTATCGTCCATCTCACTATGTTGTAT-AACATATCG--CAG-TGTTTTCAGACCCGAAGACC----AA-----TACCTGTTCTTCATGT----AATACA--TGTACAATATTTACATT-------GTACTATTCGACTATTAGat
gi|142749 : TAAGTCGGTATACTGTGGCACA-------TACTTAACAAAT-A--A---A------------G-CT--TT-ATTT--TCGGTTTAGAACATTAGTATCCATCTCACTATGCTGTAC-GACATATCG--CAACTG-TTTCAGACCCGAAGACCTTAGAC-----TACCTATTCTTCGTGT----AATACA--TGTACACTACTTACATT-------ATACTATTCGTCTATCGGC
gi|142750 : GTTG---TATCGTTATTTA-------CACTTCACAAAT-A--A---A------------G-AA--TG-CTT---CCGTTTTAGAACATTATCGTCCATCTCACTATGTTGTAT-GACATATTG--CAGCTG-TTTCAGAACCGAAGACC----AA-----TACCTGTTCTTCGTGT----AAAACA--TGTACAGAATTTACATT-------GTACTATTCGACTATTAGCac
gi|142751 : TTA-------CACTTCATAAAT-A--A---A--------G---A-AA--GT-TT----CCGTTTTAGAACATTATCGTCCATCTCACTTTGTTGTAT-GACATATCG--CAGCTG-TTTCAGAACCGAAGACC----AA-----TACCTGTTCTCCGTGT----AATACA--TTTACAATATTTACAAT-------GTACTATTCGACTATTAGCacac
gi|142752 : T-TTTT--GCGTTTTAGAATATTATCGTCCATCTCATTATTTAGTAT-GACATATCG--CAGCTG-TTTCAGACTCGTAGACC----AT-----TACCTGTTCTTCATGT----ATTACA--TGTACAATATTTACATT-------GTAATATTCGTCTATTAGCaaac
gi|142753 : TCTCACTATGCTGTAC-GACATATCA--CAACAG-TTTCAGACCCGAAGACC----TTAGGC-TACCTATTCTTCGTGT----AATACATGTGTACACTTCTTACATT-------GTACTATTTGTCTATCGGC
gi|142754 : --CAGCTA-TTTCAGACCCGTAGACC----AT-----TACCTGTTCTTCATGT----AGTATA--TGTATGCTATTTACATT-------GTACTATTCGTCTATTAGCac
gi|142755 : CCTGTTCTTCGTGC----AATACA--TATACAATATATACCTT-------GTACTATTCGTCTATTAGC