lowQualScore : 222222222222 111111 1111 1 11 111111111111 1 111111 1 11111 222222222 3333333333 1 11 22222222 11111 111111 1 11 1
lowQualScore : 6 1 22 6 88 5 2 777777 77 8 7 1 0 2 2 666666666666 999 888888 444 0000 444 7777777 6 7 66666 44 0 2 11 5 77 1 555555555555 888 4 555 999999 0 55 3 55 44 2 3 555 77777 555 3 2 00000 1 2 777 1 1 5 3 44 66 333333333 1111111111 555 7 3 1 44 33 1 00 55 1 3 33 7777 7777 55 4 33333333 11111 3 1 99 666666 2 4 777 1 55 66 5 4 5 5
lowQualScore : . . .. . .. . . ...... .. . . . . . . ............ ... ...... ... .... ... ....... . . ..... .. . . .. . .. . ............ ... . ... ...... . .. . .. .. . . ... ..... ... . . ..... . . ... . . . . .. .. ......... .......... ... . . . .. .. . .. .. . . .. .... .... .. . ........ ..... . . .. ...... . . ... . .. .. . . . .
lowQualScore : 7 7 77 7 55 0 6 777777 44 2 2 4 1 4 9 888888888888 888 111111 444 6666 444 1111111 5 2 22222 66 9 5 66 6 66 0 222222222222 555 8 444 888888 1 33 3 22 22 2 3 888 11111 888 6 8 44444 4 8 333 1 8 4 6 22 88 777777777 4444444444 888 0 6 6 55 66 5 00 00 7 6 99 7777 7777 00 4 99999999 11111 4 9 33 444444 0 4 888 9 00 11 0 4 2 0
consensus : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAGAGAGCTGCTAGACTTATTCTCG-ATAAAAACA-T-----T--GATAC-N-CCN-----TC---TG--NAGCAT---TATTCG-ATG-ANCTNAA-----ATGGATGACGTTCCCTGAAAGAG-TNAAATNT-CAAAAGGC--NA--TTTT-NATGT-NTAAGAT---CA-T-C--AACGACCNGGCC-CCA-GAGTATCTGCAAA-A---TAAT--TT---TACCCCA-ACANCN----AATGTNCATTCTAAAAATCTACGC-T-CACAGTCAAATAATTCTCTA---TA----TGTA----------CCAAAACC--AAANT-TAGAAACGTATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATC----TGGA----ATTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTC-CCCT---GTCACAACAAAGATAAATTT--TCATTG--TCTTACAAAA-CATTAAACTTGTATCCTCATTGCAGT-CAGTTGATTCTT
Reference ( gi|6389 ) : ATTGCAAC-TCTGACCTATCTGA-CAACGT-ATTAAAATTTC------AAAAACGTGCTGCAAGACTTATCCTTG-ATAAAGACA-T-----T--GATAC-A-CCA-----TC---TG--AAACAT---TATTTA-ATG-ATCTAAA-----ATGGATGAAATTCCATGAAAGAG-TAGAATAT-AAAAAGGC--TA--TTTT-AATGT-TCAAGAT---CA-T-C--AACAACTTGGCC-CCA-GAGTATTTGCAAA-A---TAAT--TT---TACCCCA-ACACCA----AATATACATTCTAAAAATCTGCGC-T-CACAGTCAAATAATTCTCTA---TA----TGTA----------CCAAAACC--AAATT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATC----TGGA----ATTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCAGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAAAAGTC-CCCT---GTCACAACAAAGATAAATTT--TCATTG--TGTTACAAAA-CATTAAACTTGTATCCTTATTGCAGT-CAGTTGATTCTT
gi|6390 : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAACGTGCTGCAAGACTTATCCTTG-ATGAAGACA-T-----T--GATGC-A-CCA-----TC---TG--AAACAT---TTTTTA-ATG-ATCTAAA-----ATGGATGAAATTCCATGAAAGAG-TAGAATAT-AAAGAGGC--TA--TTTT-AATGT-TCAAGAT---CA-T-C--AACAACTTGGCC-CCA-GAGTATTTGCAAA-A---TAAC--TT---TACCCCA-ATACCA----AATCTACATTCTAAAAATCTACGC-T-CACAGTCAAATAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATC----TAGG----ATTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCTGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTC-CCCT---GTCACAACAAAGATAAATTT--TCATTG--TGTTACAAAA-CATTAAACTTGTATCCTCATTGCAGT-CAGTTGATTCTT
gi|6391 : ATTGCAAC-TCTGACCTATCCGA-CAACAT-ATTAAAATTTC------AAAAACGTGCTGCAAGACTTTTCCTTG-ATAAATACA-T-----T--GATAC-A-CCA-----TC---TG--AAACAT---AATTTA-ATG-ATCTAAA-----ATGGATGAAATTCCATGAAGGAG-TAGAATAT-AAAAAGGC--TA--TTTA-AATGT-TCAAGAT---CA-T-C--AACAACTTGGCC-CCAAGAGTATTTGCAAA-A---TAAT--TT---TAACCCA-ACACCA----AATATACATTCTAAAAATATACGC-T-CACAGTCAAATAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATC----TGGA----ATTCC--CTTCCAAACTATGTG-AAAAATGC--------TTC-----ATCGGTTAAAGAACTT-ATAGATATTATATA-ACATTTAAATA------TAACAGTC-CCCT---GTCACAGCAAAGATAAATTT--TCATTG--TCTTACAAAA-CATTGAATTTGTATCCTCATTGCAGT-CAGTTGACTC
gi|6392 : ATTGCAAC-TCTGACCTATCTGA-CAAAAC-ATAGAAATGTA------AAAAACGTGCTGCAAGAACTATCCTTG-ATAAAGACA-T-----T--GATAC-A-CCA-----TC---TG--AAACAT---TATTCA-ATG-ATCTACA-----ATGGATGAAATTCTATGAAAATG-TAGAATAT-TAAATGGC--TA--TTTT-AATGT-TCAAGAT---CA-T-C--AACACTTTTGCC-CCA-GAGTATTTGCAAA-A---TAAT--TT---TACCCCT-ACACCAAAATAATGTACATTCTAAAAGTCTACGC-T-CACAGTCAAATAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TGGAAACATATCGCAAAACTC--TTATAT-ATATTCT-GGATAAAAAATC----TTGA----ATTCC--CGTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAG---------------ATTTAAATA------AAACAGTC-CCCT---GTCAAAACAAAGATAAATGT--TCATTG--TCTTATAAAA-CATTAAACTTGTATCCTCATTGCAGT-TAGTTGATTC
gi|6393 : ACTGCAAT-TCAGAACT-TTTGAACAATCT-CCTAAAATTCC------AAAAACGTGCAGCGAGAATAATACTCA-ACAA-GACT-A-----T--GAT-T-ATCCA-----TC---TG--CAGAAT---TATTTG-ATC-AACTTGG-----CTGGATGACATTCCAGGAAAGAA-TCCAATAT-AAAAAGGC--TA--CTCT-TGTTT-TCAA-AT---C--T-CTAAACAATCTGGCA-CCA-GCTTATCTCCAGA-A---CAAG--TT---CA
gi|6394 : ATTATAAC-TCTGACCTACAT-A-CAACAT-ATTGAAATTTA------ACAATCGTGCTGCAAGACCTATCCTTG-ATAAAGACA-T-----T--GACAC-gttttgggagtgactttcatggcattaatttaaggtcaggtgaccaaagtcaactgtatattccaaagcctaatcttgaaatatatcaaaaaacactttcatactctggcgttaaaatttggaactcacttcc
gi|6395 : ATTGTAATGTTTGACTTGTA-GA-TAAAATTGTTAGA-TTTC------AAAGGAGAGCTGCTAGACTTATTATCG-GTAAAAATA-------C--GATAC-T-CC------TA---CA--GAAC-----TATTCA-CTT-AGCTTAA-----ATGGATGACGTTTCCTGTAAGAGTTAAATTTT-AAAAAAGC--AG--TACT-CATGT-ATAA-AT---AA-T-CT-AATGAC-CGGCT-CCT-GTATATCT-CAAA-GACTTA----TT---TACTCAA-ACAACT----AATGTTCA---TAAA--------C-T-CACAATACGGTTATCCTCTA----A----TCTA----------C
gi|6398 : T-ATTAGG-TTTC------AAACGAGAGCTGCTCGACTTATTCTCG-ATAAAA--A-T-----TACAATACTA-CT------TC---TA--AAGAAT---TATTCA-AAG-AGCTTAA-----ATGAATGACGTCTC-TGTAAGAG-TTAAATTT-CCAAAAGCAGAA--CTT---ATAT-ATAAG-T---CATT-T--AATGACCGGGCC-CCA-G
gi|6399 : T-ATTAGATTTTA------AAAGAAGAGCTGCAAGACTTATACTTG-ATTCAGAT-------------TAC-G-GCACTTGTTC---TG--CTGCAC---TATTTA-ATG-AACTCAG-----TTGGATAACGTTTCTTG-AAGGG-TA-AATTT-AAAAAA----TAATTTTT-GTTGT-TTAAAAT---
gi|6400 : TAAGATTTCTAAAAAAAAAAAGGGCTGCATGACTCATCCTTG-AAAAAAACATT-----T--CACAC-T-CCT-----TC---TGTTGAAC-----TATTTG-CTG-AACTGGA-----TTAGATTACTTCCCATGAAAGAG-TAACATTC-CAAAAGGC--
gi|6401 : TAAGGTTTC------AAAAGAAAGCAGCTAGACTTATTCCTG-GTAAAAACT-A-----T--GATAC-T-CC-----------TG--CAACAT---AATT---ATGCAT-TAAACTTATATGAATGAAGCTTGCTGAAAGAG-TTAAATTT-CAAAAGGC--
gi|6396 : AAATTCC------AAAAGAGATCTGCTAGAATTATTTTTGGACAAAGATT-A-----T--GACAC-A-CCG-----TT---CA--ATGAAT---TATTTT-ACG-AATTGAA-----ATTAATGGAATTCCCTGATAGAG-CTAAATAT-CAAAAAGC--
gi|6397 : atagtcAAACTTC------AAAAGAGATCTACTAGAATTATCCTGA-AAAAAAATA-TATATAT--GATAT-A-CAG-----TCCAGTG--AATCAT---TTTCCG-A---ATTTACA------TGGATGGACTTTCCTGATAGAG-TTAAATAT-CAAAA-GC--AA--TATT-AATGT-ACAAAAC---AA-TAA--AAGAATTTCACCACCT-TA-TCTTTG-AGA-T---TCAT--TT---AAGTACATACATGA----A--ATACATTACCAAAACTTAAGA-TCCACA-TCAGAAAGTTTGTTG---TT----AATC----------CTAAAGCC--AAACTGTAGTTATATA---TAAAATCT--T--TGTCATATTCG-GGAGCTGCAATT----TGGA----ATTCC--TTACC
gi|6402 : atagtcTTTC------AAAAGAGAGCTGCTAGACTTATTCTCG-ATAAAAA---T-----TACGATAC-T-CCT-----TC---TA--CAGAAT---TATTCA-CAG-AGCTTAA-----ATGGATGACGTTTCCTTAAAGAG-T-TAATAT-CAAACAGCAGTA--CTT---ATAT-ATAA-AT---CA-TGT--GATGACCAGGCT-CCT-GAATATCTCAAAA-A---TGTA--TT---TACTTTA-ACAGCT----AATGTTCAT-----ACATGCACAC-T--ACGGTC-----ATCCTCTG---TC----TACAGTTGTGTTCTCCTAAGCC--TAATT-CTGAAATATTTCG--AAATTCGTT--TGC-TTATTCA-GGCTCT----TCTTTGTGGA----ACTCT--ATTCCGTCTTATATA-AAAAATGCAAA-----TTCTTTTAATCAGTTCAA
gi|6403 : TTTC------AAAAGAGAGCTGCTAGACTTATTCTCG-ATAAAAA---T-----TACGATAC-T-CCT-----TC---TA--CAGAAT---TATTCA-CAG-AGATTAA-----ATGGATGAAGTTTCTTGAAAGAG-TAAAATTT-CAAAAAGCAGTA--CTT---ATAT-ATAA-AT---CATT-T--AATTATCAGGCT-CCA-GCATATCT-C-GA-A---TATTTATT---TACTTCA-TCAGCT----AATGTTCAT-----ACACGCACAC-T--ACGGTC-----ATCCTCTAATCTACAGTTGTATTCT------CCTAAGCC--TAATT-CTGAAATTTTTCG--AAGTTCATT--TGC-TTATTCA-GGCTCTTCCATG----TGGAAATTATTCCGTCTT-------ATATA-AAAAATGCAAAATTTATTA-----ATCAGTTCAAAGCTTTA
gi|6404 : TTTC------AAAAGAGAGCTGCTAAACTTATTCTAT-ATAAA---A-T-----TACGATAC-T-CCT-----TC---TA--CAGAAT---TATTCACAT--AGCTTGA-----ATGGATGTCGTTTCCTGAAAGAG-TAAAATTT-CAAAAAGC--CG--TGCA-CGTGT-ATAA-AT---CA-T-TA-AATGACCAGGCT-CCT-GCATAGCT-CAAAGA---TTAA--TT---TACTCTA-ACAGCT----AATGTTCATTC-A------CGCACAT-TACGGTC-----ATCCTCTAATCTACAGTTGTATTCT------CCGAAGCC--TAATT-CTGAAATGTTTCG-AAATCCG--T--T----TATTCA-GGATC
gi|6405 : GCTGCTGGACTTATTCTCG-ATAAAAACA-TA----T--GATAA-T-CCT-----TC---T-----ACAG----ATTTT-AT---TCTCAG-----ATGGATGACGTTTCCTGAAAAAG-TTAAATTTAAAAAAGGC--AG--TACT-CGTGTAT--ATAT---CATT-T--AATGAGCGGGCT-CCT-GTATATCT-CAAA-G---C--T--TTATATACTCTA-ACAGCC----AATGTTCATAC--AAAATCT
gi|6406 : GCTGCTAGAATTATTCTCG-ATAAAAA-A-TA----C--GATAT-T-CCT-----TG---T-----ACATAGTTATTCA-CAA-AGCTTAA-----ATGGACGAAATCCC-TGAAAGAG-TTAAATTT-CAAAAGGC--
gi|6407 : -AAGAATGT--AA--TTTTGAACAT-TTCAAATACTCA-A-C--AACAACTTGGTC-CCA-GAGTATTTATAAA-A---TAAT--TT---TACCCCT-ACACCA----AATATACATTCTAAAAATCTACGC-T-CACAGTCAAATAATTCTCTA---TA----TGGA----------CCAAAACC--AAA--------------------ATTC--T--TAT-ATATTCT-GGATCCAAAATC----TGGA----ATTCC--CTTCCAAACCATATT-AAAAAGGC--------TCC-----ATCGGTTCAAGAACTTAAGAGATTTTATAT--ATATTTATATA------TAACAGTC-CCCT---GTCACAACAAAGAT-AATTT--GCATTG--TCTTACAAAA-AATTAAAC-----------TTGCAGT-TAGTTGATTCTT
gi|6408 : AGTATTTGCAAA-A---TAAT--TT---TACCCCA-ACACCA----AATATAAATTCTAAAAATCTACGC-T-CACAGTCAAATAATTCTCTA---TT----TGTA----------CCAAAACC--GAAGT-TACAAACATATCGTAAAACTC--T--TAT-ATATTCT-AGATCCAAAATC----TGGA----ATTCC--CTTCCAAACCATGTT-AAAAATAC--------TTC-----ATCGGTTCAAGAATTTAAAAGATATTATATA-ACATTTAAATA------TAACAGTC-CCTT---GTCACAACAAAGATAAATTT--TCATTA--TCTTACAAAA-CATTAAACTTGTATCCTCATTGCAGT-CAGTTGATTCTT
gi|6409 : ATCCTAAAAATCTACGC-T-CACAATCAAATAATTCTTTA---TC----TGTA----------TCAAAAACTTAAGTT-TAAGAA------------------------ATATTCT-GGATCCAAAATC----TGGA----ATTTC--CTTCCAGAACATG
gi|6410 : T-TAGAATTGTACAGCAAGCCTC--T--CAT-AT--TCTCAGATCCAAAATT----TGGA----ATTCT--CTTCCAGAAGACATTAAAAAAAGG--------TTC-----TCCTGCTGAAGAATTTACGATATATTACATGCACATTTAAATAGAGCAGTAACATTC-CCCTTCCATCACAA
gi|6411 : agATA----TGGA----ATGAC--ATTCCTAACCATGTT-AAAAATCC--------TTC-----ATTAGTTCAAGAGATTAAgagtgatcagtgtct
gi|6412 : ATTTTACATA-ACATTAAAATA------TAACAGTC-CCCT---ATCATAACAAAGAT-AATTTCATCACTG--TCTTAT--AA-CATTAAAGTTACATCTTCATTGCAGCATAATTGATTTTTttccatatcacaacaaagatatttttatcattgtcttttacaaggccattattaataaactgctagattctcat
gi|6413 : AAGTTACCCT---GTCACAACAAA---AAATTT---CATTG--TCTTACACAA-CATTAAACTTGTATCCTTATTGCAGC-CAAATGATTCTT
gi|6411 : tacacaaaattcTT-CCAT---ATCACAACAAAGATATTTTTA-TCATTGTCTTTTACAAGGCCATTA
gi|6414 : atatggaatgacattcctaaccatgttaaaaatccttcattagttcaagagattaaAAATTTG-TTATTA--A--TACAAAA-CACTAAACTTGTATCCTCATTGCAGC-CAttaataaactgctagattctcat
Alignments
lowQualScore : 22222222 1111 111 1 111111 1 111111111 2222222222 1 22222222 11111 111111 11 111111
lowQualScore : 5 0 0 5 3 3 777777 2 1 2 0 2 77 00000000 2 1 2 444 1 0000 000 0 1 1 2 44 2 3 1 666 0 1 3 1 5 1 0 555 333333 4 3 2 2 3 888 4444 555 3 3 1 77777 77777 1 8888 1 555 3 555 44444 777777777 6666666666 555 1 3 3 88 0 0 88 44 333 3 6666 6666 44 4 11111111 00000 1 4 0 66 111111 1 22 55 4 111111 55 4
lowQualScore : . . . . . . ...... . . . . . .. ........ . . . ... . .... ... . . . . .. . . . ... . . . . . . . ... ...... . . . . . ... .... ... . . . ..... ..... . .... . ... . ... ..... ......... .......... ... . . . .. . . .. .. ... . .... .... .. . ........ ..... . . . .. ...... . .. .. . ...... .. .
lowQualScore : 7 1 1 7 6 5 222222 5 7 4 8 2 44 33333333 2 0 6 111 0 3333 555 7 0 0 4 22 4 3 0 888 4 0 9 0 7 0 6 000 888888 0 1 4 4 1 555 7777 444 1 1 0 55555 77777 0 9999 2 444 1 444 99999 333333333 5555555555 555 0 1 9 88 7 3 55 22 333 1 5555 5555 22 0 55555555 00000 4 9 3 22 555555 3 33 00 0 555555 55 4
consensus : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAGA-GAGCTGCNAGACTTATCCTCG-ATAAAAACAT-----T--G-ATACTCCNTC---TGCAGA---ATTATTCA-ATGANCTTAAATGGAT-GACGTTCCC-TGAAAGAGTNAAATNT-C-AAAAGGCNGTNCTNA-TGTNTAAGAT---CA-T-C--AACGACCTGGCCCCA-GNGTATCTGCAAA-A---TAAT--TT---TA-CCCCA-ACANC----NA-----ATGTNCATTCTAAAAATCTACGC---T-CACGGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAANT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATC----TGGA----ATTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTC--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
Reference ( family-705 ) : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAGA-GAGCTGCTAGACTTATTCTCG-ATAAAAACAT-----T--G-ATACNCCNTC---TGNAGC---ATTATTCG-ATGANCTNAAATGGAT-GACGTTCCC-TGAAAGAGTNAAATNT-C-AAAAGGCNATTTTNA-TGTNTAAGAT---CA-T-C--AACGACCNGGCCCCA-GAGTATCTGCAAA-A---TAAT--TT---TA-CCCCA-ACANC----NA-----ATGTNCATTCTAAAAATCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAANT-TAGAAACGTATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATC----TGGA----ATTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTC--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
gi|6389 : ATTGCAAC-TCTGACCTATCTGA-CAACGT-ATTAAAATTTC------AAAAAC-GTGCTGCAAGACTTATCCTTG-ATAAAGACAT-----T--G-ATACACCATC---TGAAAC---ATTATTTA-ATGATCTAAAATGGAT-GAAATTCCA-TGAAAGAGTAGAATAT-A-AAAAGGCTATTTTAA-TGTTCAAGAT---CA-T-C--AACAACTTGGCCCCA-GAGTATTTGCAAA-A---TAAT--TT---TA-CCCCA-ACACC----AA-----ATATACATTCTAAAAATCTGCGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAATT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATC----TGGA----ATTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCAGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAAAAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTG--TTACAAAA-CAT------TAAACT--TGTATCCTTATTGCAGT-CAGTTGATTCTT
gi|6390 : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAAC-GTGCTGCAAGACTTATCCTTG-ATGAAGACAT-----T--G-ATGCACCATC---TGAAAC---ATTTTTTA-ATGATCTAAAATGGAT-GAAATTCCA-TGAAAGAGTAGAATAT-A-AAGAGGCTATTTTAA-TGTTCAAGAT---CA-T-C--AACAACTTGGCCCCA-GAGTATTTGCAAA-A---TAAC--TT---TA-CCCCA-ATACC----AA-----ATCTACATTCTAAAAATCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATC----TAGG----ATTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCTGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTG--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
gi|6391 : ATTGCAAC-TCTGACCTATCCGA-CAACAT-ATTAAAATTTC------AAAAAC-GTGCTGCAAGACTTTTCCTTG-ATAAATACAT-----T--G-ATACACCATC---TGAAAC---ATAATTTA-ATGATCTAAAATGGAT-GAAATTCCA-TGAAGGAGTAGAATAT-A-AAAAGGCTATTTAAA-TGTTCAAGAT---CA-T-C--AACAACTTGGCCCCAAGAGTATTTGCAAA-A---TAAT--TT---TA-ACCCA-ACACC----AA-----ATATACATTCTAAAAATATACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATC----TGGA----ATTCC--CTTCCAAACTATGTG-AAAAATGC--------TTC-----ATCGGTTAAAGAACTT-ATAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAGCAAAGATAAATTT--TCATTGTC--TTACAAAA-CAT------TGAATT--TGTATCCTCATTGCAGT-CAGTTGACTC
gi|6392 : ATTGCAAC-TCTGACCTATCTGA-CAAAAC-ATAGAAATGTA------AAAAAC-GTGCTGCAAGAACTATCCTTG-ATAAAGACAT-----T--G-ATACACCATC---TGAAAC---ATTATTCA-ATGATCTACAATGGAT-GAAATTCTA-TGAAAATGTAGAATAT-T-AAATGGCTATTTTAA-TGTTCAAGAT---CA-T-C--AACACTTTTGCCCCA-GAGTATTTGCAAA-A---TAAT--TT---TA-CCCCT-ACACCAAAATA-----ATGTACATTCTAAAAGTCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TGGAAACATATCGCAAAACTC--TTATAT-ATATTCT-GGATAAAAAATC----TTGA----ATTCC--CGTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAG---------------ATTTAAATA------AAACAGTCCCCTGTCAAAACAAAGATAAATGT--TCATTGTC--TTATAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-TAGTTGATTC
gi|6393 : ACTGCAAT-TCAGAACT-TTTGAACAATCT-CCTAAAATTCC------AAAAAC-GTGCAGCGAGAATAATACTCA-ACAAGACTAT--------G-ATTATCCATC---TGCAGA---ATTATTTG-ATCAACTTGGCTGGAT-GACATTCCA-GGAAAGAATCCAATAT-A-AAAAGGCTACTCTTG-T-TTTCAAAT---C--T-CTAAACAATCTGGCACCA-GCTTATCTCCAGA-A---CAAG--TT---CAGTTTTG-GGAGT----GACTTTCATG-GCATT-----AATTTAAGG---T-CA-GGTGACCAAAGTCAA----CTG---TA----TATT----------CCAAAGCC--TAATC-TTGAAATATATCAAAAAACAC--T--TTC-ATACTCT-GGCGTTAAAATT----TGGA----ACTCA--CTTCC
gi|6394 : ATTATAAC-TCTGACCTACAT-A-CAACAT-ATTGAAATTTA------ACAATC-GTGCTGCAAGACCTATCCTTG-ATAAAGACAT-----T--G-ACAC
gi|6395 : ATTGTAATGTTTGACTTGTA-GA-TAAAATTGTTAGA-TTTC------AAAGGA-GAGCTGCTAGACTTATTATCG-GTAAAAATA------C--G-ATACTC---C---TACAGA---ACTATTCA-CTTAGCTTAAATGGAT-GACGTTTCC-TGTAAGAGTTAAATTT-TAAAAAAGCAGTACTCA-TGTATAA-AT---AA-T-CT-AATGACC-GGCTCCT-GTATATCT-CAAA-GACTTA----TT---TA-CTCAA-ACAAC----TA-----ATGTTCA---TAAA--------C---T-CACAAT---ACGG--TTATCCTCTA----A----TCTA----------C
gi|6396 : AT-AGTCAAATTCC------AAAAGA-GATCTGCTAGAATTATTTTTGGACAAAGATTA-----T--G-ACACACCGTT---CAATGA---ATTATTTT-ACGAATTGAAATTAAT-GGAATTCCC-TGATAGAGCTAAATAT-C-AAAAAGC
gi|6397 : AT-AGTCAAACTTC------AAAAGA-GATCTACTAGAATTATCCTGA-AAAAAAATATATATAT--G-ATATACAGTCCAGTGAATC---ATT-TTC---CGAATTTACATGGATGGAC-TTTCC-TGATAGAGTTAAATAT-C-AAAA-GCAATATTAA-TGTACAAAAC---AA-T-A--AAAGAATT-TCACCA-CCTTATCTTTGAG-AT--TCAT--TT---AA-GTACATACATG----AA-----A--TACATTACCAAAACTTAAGA---TCCACA-T---CAGA--AAGTTTGTTG---TT----AATC----------CTAAAGCC--AAACTGTAGTTATATA---TAAAATCT--T--TGTCATATTCG-GGAGCTGCAATT----TGGA----ATTCC--TTACC
gi|6398 : T-ATTAGG-TTTC------AAACGA-GAGCTGCTCGACTTATTCTCG-ATAAAA--AT-----TACA-ATACTACTTC---TAAAGA---ATTATTCA-AAGAGCTTAAATGAAT-GACG-TCTC-TGTAAGAGTTAAATTT-C-CAAAAGCAGAACTTA-TATATAAG-T---CATT-T--AATGACCGGGCCCCA-G
gi|6399 : T-ATTAGA-TTTT------AAAAGAAGAGCTGCAAGACTTATACTTG-ATTCAG--AT-----TACG-GCACTTGTTC---TGCTGC---ACTATTTA-ATGAACTCAGTTGGAT-AACGTTTCT-TG-AAGGGT-AAATTT---AAAAAATAATTTTTGTTGTTTAAAAT---
gi|6400 : TAAGATTTCTAAAAAAAAAAA-GGGCTGCATGACTCATCCTTG-AAAAAAACAT-----T--TCACACTCCTTC---TGTTGA---ACTATTTG-CTGAACTGGATTAGAT-TAC-TTCCCATGAAAGAGTAACATTC-C-AAAAGGC
gi|6401 : TAAGGTTTC------AAAAGA-AAGCAGCTAGACTTATTCCTG-GTAAAAACTA-----T--G-ATACTC---C---TGCAACATAATTATGCA-TTAAACTTATATGAAT-GAAGCTTGC-TGAAAGAGTTAAATTT-C-AAAAGGC
gi|6402 : TTTC------AAAAGA-GAGCTGCTAGACTTATTCTCG-ATAAAA--AT-----TACG-ATACTCCTTC---TACAGA---ATTATTCA-CAGAGCTTAAATGGAT-GACGTTTCC-TTAAAGAGTT-AATAT-C-AAACAGCAGTACTTA-TATATAA-AT---CA-TGT--GATGACCAGGCTCCT-GAATATCTCAAAA-A---TGTA--TT---TA-CTTTA-ACAGC----TA-----ATGTTCAT-----ACATGCACAC---T--ACGGT---C-------ATCCTCTG---TC----TACAGTTGTGTTCTCCTAAGCC--TAATT-CTGAAATATTTCG--AAATTCGTT--TGC-TTATTCA-GGCTCT----TCTTTGTGGA----ACTCT--ATTCCGTCTTATATA-AAAAATGCAAA-----TTCTTTTAATCAGTTCAA
gi|6403 : TTTC------AAAAGA-GAGCTGCTAGACTTATTCTCG-ATAAAA--AT-----TACG-ATACTCCTTC---TACAGA---ATTATTCA-CAGAGATTAAATGGAT-GAAGTTTCT-TGAAAGAGTAAAATTT-C-AAAAAGCAGTACTTA-TATATAA-AT---CATT-T--AATTATCAGGCTCCA-GCATATCT-C-GA-A---TATTTATT---TA-CTTCA-TCAGC----TA-----ATGTTCAT-----ACACGCACAC---T--ACGGT---C-------ATCCTCTAATCTACAGTTGTATTCT------CCTAAGCC--TAATT-CTGAAATTTTTCG--AAGTTCATT--TGC-TTATTCA-GGCTCTTCCATG----TGGAAATTATTCCGTCTT-------ATATA-AAAAATGCAAAATTTATTA-----ATCAGTTCAAAGCTTTA
gi|6404 : TTTC------AAAAGA-GAGCTGCTAAACTTATTCTAT-ATAAAATTAC--------G-ATACTCCTTC---TACAGA---ATTATTCACAT-AGCTTGAATGGAT-GTCGTTTCC-TGAAAGAGTAAAATTT-C-AAAAAGCCGTGCACG-TGTATAA-AT---CA-T-TA-AATGACCAGGCTCCT-GCATAGCT-CAAAGA---TTAA--TT---TA-CTCTA-ACAGC----TA-----ATGTTCATTC---------ACGCACAT-TACGGT---C-------ATCCTCTAATCTACAGTTGTATTCT------CCGAAGCC--TAATT-CTGAAATGTTTCG-AAATCCG--T--T----TATTCA-GGATC
gi|6405 : GCTGCTGGACTTATTCTCG-ATAAAAACATA----T--G-ATAATCCTTC---TACAG-------ATTTT-AT--TCTCAGATGGAT-GACGTTTCC-TGAAAAAGTTAAATTTAA-AAAAGGCAGTACTCG-TGTAT-ATAT---CATT-T--AATGAGCGGGCTCCT-GTATATCT-CAAA-G---C--T--TTATATA-CTCTA-ACAGC----CA-----ATGTTCATAC--AAAATCT
gi|6406 : GCTGCTAGAATTATTCTCG-ATAAAAA-ATA----C--G-ATATTCCTTG---TACATA---GTTATTCA-CAAAGCTTAAATGGAC-GAAA-TCCC-TGAAAGAGTTAAATTT-C-AAAAGGC
gi|6407 : -AGAATGTAATTTTGAACATTTCAAATACTCA-A-C--AACAACTTGGTCCCA-GAGTATTTATAAA-A---TAAT--TT---TA-CCCCT-ACACC----AA-----ATATACATTCTAAAAATCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGGA----------CCAAAACC--AAAAT-T-------------------C--T--TAT-ATATTCT-GGATCCAAAATC----TGGA----ATTCC--CTTCCAAACCATATT-AAAAAGGC--------TCC-----ATCGGTTCAAGAACTTAAGAGATTTTATAT--ATATTTATATA------TAACAGTCCCCTGTCACAACAAAGAT-AATTT--GCATTGTC--TTACAAAA-AAT------TAAAC-------------TTGCAGT-TAGTTGATTCTT
gi|6408 : aAGTATTTGCAAA-A---TAAT--TT---TA-CCCCA-ACACC----AA-----ATATAAATTCTAAAAATCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TT----TGTA----------CCAAAACC--GAAGT-TACAAACATATCGTAAAACTC--T--TAT-ATATTCT-AGATCCAAAATC----TGGA----ATTCC--CTTCCAAACCATGTT-AAAAATAC--------TTC-----ATCGGTTCAAGAATTTAAAAGATATTATATA-ACATTTAAATA------TAACAGTCCCTTGTCACAACAAAGATAAATTT--TCATTATC--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
gi|6409 : ATCCTAAAAATCTACGC---T-CACAAT---CAAA--TAATTCTTTA---TC----TGTA----------TCAAAAACTTAAGTT-TAAGAA------------------------ATATTCT-GGATCCAAAATC----TGGA----ATTTC--CTTCCAGAACATG
gi|6410 : AGT-TAGAATTGTACAGCAAGCCTC--T--CAT-AT--TCTCAGATCCAAAATT----TGGA----ATTCT--CTTCCAGAAGACATTAAAAAAAGG--------TTC-----TCCTGCTGAAGAATTTACGATATATTACATGCACATTTAAATAGAGCAGTAACATTCCCCTTCCATCACAAGAGTGA------TCAGTGTC--T
gi|6411 : ATA----TGGA----ATGAC--ATTCCTAACCATGTT-AAAAATCC--------TTC-----ATTAGTTCAAG--------AGAT--------------------------TAA---TTCCATATCACAACAAAGATATTTTTA-TCATTGTCTTTTACAAGGCCATTATTAATAAACTGCTAGATTCTCAT
gi|6412 : ATTTTACATA-ACATTAAAATA------TAACAGTCCCCTATCATAACAAAGAT-AATTTCATCACTGTC--TTAT--AA-CAT------TAAAGT--TACATCTTCATTGCAGCATAATTGATTTTT
gi|6413 : TACACA-AAATTCAAGT-------TA------CCCTGTCACAACAAA---AAATTT---CATTGTC--TTACACAA-CAT------TAAACT--TGTATCCTTATTGCAGC-CAAATGATTCTT
gi|6414 : AAATTTG-TTATTAA----TACAAAA-CAC------TAAACT--TGTATCCTCATTGCAGC-CA
Alignments
lowQualScore : 11111111 1 111111 1 1111 111111111 2222222222 1 22222222 11111 111111 11 111111
lowQualScore : 5 0 0 5 3 3 777777 2 1 1 0 0 2 5 99999999 55 0 3 0 33 33 2 555 1 1 2 44 2 3 1 666 1 1 1 3 1 1 333333 4 3 1 2 3 888 4444 555 3 3 1 77777 77777 1 4444 555 55 2 555 777777 777777777 6666666666 555 1 3 3 3 0 0 88 44 333 3 6666 6666 44 4 11111111 00000 1 4 0 66 111111 1 22 55 4 111111 55 4
lowQualScore : . . . . . . ...... . . . . . . . ........ .. . . . .. .. . ... . . . .. . . . ... . . . . . . ...... . . . . . ... .... ... . . . ..... ..... . .... ... .. . ... ...... ......... .......... ... . . . . . . .. .. ... . .... .... .. . ........ ..... . . . .. ...... . .. .. . ...... .. .
lowQualScore : 7 1 1 7 6 5 222222 5 7 0 8 8 2 6 22222222 33 2 3 5 22 22 4 111 8 7 4 22 4 3 0 999 0 0 0 1 0 0 888888 5 1 0 4 1 555 7777 444 1 1 0 55555 77777 0 1111 444 88 5 444 999999 333333333 5555555555 555 0 1 9 2 7 3 55 22 333 1 5555 5555 22 0 55555555 00000 4 9 3 22 555555 3 33 00 0 555555 55 4
consensus : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAGA-GAGCTGCNAGACTTATCCTCG-ATAAAAACAT-----T--G--ATACTCCNTCTGCA--G--AATT-ATTCA-ATGAGCTTAAATGGAT-GACGTTCCC-TGAAAGAGTNAAATNT-C-AAAAGGCNGTNCTNA-TGTNTAAGATCA-T-C--AACGACCTGGCCCCA-GNGTATCTGCAAA-A---TAAT--TT---TA-CCCCA-ACANC----NA-----ATGTNCATTCTAAAAATCTACGC---T-CACGGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAANT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGA----ATTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTC--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
Reference ( family-705 ) : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAGA-GAGCTGCNAGACTTATCCTCG-ATAAAAACAT-----T--G--ATACTCCNTCTGCA--G--AATT-ATTCA-ATGANCTTAAATGGAT-GACGTTCCC-TGAAAGAGTNAAATNT-C-AAAAGGCNGTNCTNA-TGTNTAAGATCA-T-C--AACGACCTGGCCCCA-GNGTATCTGCAAA-A---TAAT--TT---TA-CCCCA-ACANC----NA-----ATGTNCATTCTAAAAATCTACGC---T-CACGGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAANT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGA----ATTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTC--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
gi|6389 : ATTGCAAC-TCTGACCTATCTGA-CAACGT-ATTAAAATTTC------AAAAAC-GTGCTGCAAGACTTATCCTTG-ATAAAGACAT-----T--G--ATACACCATCTGAA--A--CATT-ATTTA-ATGATCTAAAATGGAT-GAAATTCCA-TGAAAGAGTAGAATAT-A-AAAAGGCTATTTTAA-TGTTCAAGATCA-T-C--AACAACTTGGCCCCA-GAGTATTTGCAAA-A---TAAT--TT---TA-CCCCA-ACACC----AA-----ATATACATTCTAAAAATCTGCGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAATT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGA----ATTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCAGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAAAAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTG--TTACAAAA-CAT------TAAACT--TGTATCCTTATTGCAGT-CAGTTGATTCTT
gi|6390 : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAAC-GTGCTGCAAGACTTATCCTTG-ATGAAGACAT-----T--G--ATGCACCATCTGAA--A--CATT-TTTTA-ATGATCTAAAATGGAT-GAAATTCCA-TGAAAGAGTAGAATAT-A-AAGAGGCTATTTTAA-TGTTCAAGATCA-T-C--AACAACTTGGCCCCA-GAGTATTTGCAAA-A---TAAC--TT---TA-CCCCA-ATACC----AA-----ATCTACATTCTAAAAATCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----AGG----ATTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCTGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTG--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
gi|6391 : ATTGCAAC-TCTGACCTATCCGA-CAACAT-ATTAAAATTTC------AAAAAC-GTGCTGCAAGACTTTTCCTTG-ATAAATACAT-----T--G--ATACACCATCTGAA--A--CATA-ATTTA-ATGATCTAAAATGGAT-GAAATTCCA-TGAAGGAGTAGAATAT-A-AAAAGGCTATTTAAA-TGTTCAAGATCA-T-C--AACAACTTGGCCCCAAGAGTATTTGCAAA-A---TAAT--TT---TA-ACCCA-ACACC----AA-----ATATACATTCTAAAAATATACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGA----ATTCC--CTTCCAAACTATGTG-AAAAATGC--------TTC-----ATCGGTTAAAGAACTT-ATAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAGCAAAGATAAATTT--TCATTGTC--TTACAAAA-CAT------TGAATT--TGTATCCTCATTGCAGT-CAGTTGACTC
gi|6392 : ATTGCAAC-TCTGACCTATCTGA-CAAAAC-ATAGAAATGTA------AAAAAC-GTGCTGCAAGAACTATCCTTG-ATAAAGACAT-----T--G--ATACACCATCTGAA--A--CATT-ATTCA-ATGATCTACAATGGAT-GAAATTCTA-TGAAAATGTAGAATAT-T-AAATGGCTATTTTAA-TGTTCAAGATCA-T-C--AACACTTTTGCCCCA-GAGTATTTGCAAA-A---TAAT--TT---TA-CCCCT-ACACCAAAATA-----ATGTACATTCTAAAAGTCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TGGAAACATATCGCAAAACTC--TTATAT-ATATTCT-GGATAAAAAATCT----TGA----ATTCC--CGTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAG---------------ATTTAAATA------AAACAGTCCCCTGTCAAAACAAAGATAAATGT--TCATTGTC--TTATAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-TAGTTGATTC
gi|6393 : ACTGCAAT-TCAGAACT-TTTGAACAATCT-CCTAAAATTCC------AAAAAC-GTGCAGCGAGAATAATACTCA-ACAAGACTAT--------G--ATTATCCATCTGCA--G--AATT-ATTTG-ATCAACTTGGCTGGAT-GACATTCCA-GGAAAGAATCCAATAT-A-AAAAGGCTACTCTTG-T-TTTCAAATC--T-CTAAACAATCTGGCACCA-GCTTATCTCCAGA-A---CAAG--TT---CAGTTTTG-GGAGT----GACTTTCATG-GCATT-----AATTTAAGG---T-CA-GGTGACCAAAGTCAA----CTG---TA----TATT----------CCAAAGCC--TAATC-TTGAAATATATCAAAAAACAC--T--TTC-ATACTCT-GGCGTTAAAATTT----GGA----ACTCA--CTTCC
gi|6394 : ATTATAAC-TCTGACCTACAT-A-CAACAT-ATTGAAATTTA------ACAATC-GTGCTGCAAGACCTATCCTTG-ATAAAGACAT-----T--G--ACAC
gi|6395 : ATTGTAATGTTTGACTTGTA-GA-TAAAATTGTTAGA-TTTC------AAAGGA-GAGCTGCTAGACTTATTATCG-GTAAAAATAC--------G--ATACTCC---TACA--G--AACT-ATTCA-CTTAGCTTAAATGGAT-GACGTTTCC-TGTAAGAGTTAAATTT-TAAAAAAGCAGTACTCA-TGTATAA-ATAA-T-CT-AATGACC-GGCTCCT-GTATATCT-CAAA-GACTTA----TT---TA-CTCAA-ACAAC----TA-----ATGTTCAT----AAACTC-ACAA---T--ACGGT---T-------ATCCTCTA----A----TCTA----------C
gi|6396 : AT-AGTCAAATTCC------AAAAGA-GATCTGCTAGAATTATTTTTGGACAAAGATTA-----T--G--ACACACCGTT--CAATG--AATT-ATTTT-ACGAATTGAAATTAAT-GGAATTCCC-TGATAGAGCTAAATAT-C-AAAAAGC
gi|6397 : AT-AGTCAAACTTC------AAAAGA-GATCTACTAGAATTATCCTGA-AAAAAAATATATATAT--G--ATATACAGTC--CA--GTGAATC-ATTTT-CCGAATTTACATGGATGGAC-TTTCC-TGATAGAGTTAAATAT-C-AAAA-GCAATATTAA-TGTACAAAACAA-T-A--AAAGAATT-TCACCA-CCTTATCTTTGAG-AT--TCAT--TT---AA-GTACATACATG----AA-----A--TACATTACCAAAACTTAAGA---TCCAC-AT---CAGA--AAGTTTGTTG---TT----AATC----------CTAAAGCC--AAACTGTAGTTATATA---TAAAATCT--T--TGTCATATTCG-GGAGCTGCAATTT----GGA----ATTCC--TTACC
gi|6398 : T-ATTAGG-TTTC------AAACGA-GAGCTGCTCGACTTATTCTCG-ATAAAAA--T-----T--ACAATACTACTTCTAAA--G--AATT-ATTCA-AAGAGCTTAAATGAAT-GACG-TCTC-TGTAAGAGTTAAATTT-C-CAAAAGCAGAACTTA-TATATAAG-TCATT-T--AATGACCGGGCCCCA-G
gi|6399 : T-ATTAGA-TTTT------AAAAGAAGAGCTGCAAGACTTATACTTG-ATTCAG--AT-----TACG--GCACTTGTTCTGCT--G--CACT-ATTTA-ATGAACTCAGTTGGAT-AACGTTTCT-TG-AAGGGT-AAATTT---AAAAAATAATTTTTGTTGTTTAAAAT
gi|6400 : TAAGATTTCTAAAAAAAAAAA-GGGCTGCATGACTCATCCTTG-AAAAAAACAT-----T--TC-ACACTCCTTCTGTT--G--AACT-ATTTG-CTGAACTGGATTAGAT-TAC-TTCCCATGAAAGAGTAACATTC-C-AAAAGGC
gi|6401 : TAAGGTTTC------AAAAGA-AAGCAGCTAGACTTATTCCTG-GTAAAAACTA-----T--G--ATACTCCTGCAACA--T--AATT-ATGCA-TTAAACTTATATGAAT-GAAGCTTGC-TGAAAGAGTTAAATTT-C-AAAAGGC
gi|6402 : TTTC------AAAAGA-GAGCTGCTAGACTTATTCTCG-ATAAAAA--T-----TACG--ATACTCCTTCTACA--G--AATT-ATTCA-CAGAGCTTAAATGGAT-GACGTTTCC-TTAAAGAGTTAA-TAT-C-AAACAGCAGTACTTA-TATATAA-ATCA-TGT--GATGACCAGGCTCCT-GAATATCTCAAAA-A---TGTA--TT---TA-CTTTA-ACAGC----TA-----ATGTTCAT-----ACATGCACAC---T--ACGGT---CA-------TCCTCTG---TC----TACAGTTGTGTTCTCCTAAGCC--TAATT-CTGAAATATTTCG--AAATTCGTT--TGC-TTATTCA-GGCTCT----TCTTTGTGGA----ACTCT--ATTCCGTCTTATATA-AAAAATGCAAA-----TTCTTTTAATCAGTTCAA
gi|6403 : TTTC------AAAAGA-GAGCTGCTAGACTTATTCTCG-ATAAAA--AT-----TACG--ATACTCCTTCTACA--G--AATT-ATTCA-CAGAGATTAAATGGAT-GAAGTTTCT-TGAAAGAGTAAAATTT-C-AAAAAGCAGTACTTA-TATATAA-ATCATT-T--AATTATCAGGCTCCA-GCATATCT-C-GA-A---TATTTATT---TA-CTTCA-TCAGC----TA-----ATGTTCAT-----ACACGCACAC---T--ACGGT---C-------ATCCTCTAATCTACAGTTGTATTCT------CCTAAGCC--TAATT-CTGAAATTTTTCG--AAGTTCATT--TGC-TTATTCA-GGCTCTTCCATGT----GGAAATTATTCCGTCTT-------ATATA-AAAAATGCAAAATTTATTA-----ATCAGTTCAAAGCTTTA
gi|6404 : TTTC------AAAAGA-GAGCTGCTAAACTTATTCTAT-ATAAAATTAC--------G--ATACTCCTTCTACA--G--AATT-ATTCACAT-AGCTTGAATGGAT-GTCGTTTCC-TGAAAGAGTAAAATTT-C-AAAAAGCCGTGCACG-TGTATAA-ATCA-T-TA-AATGACCAGGCTCCT-GCATAGCT-CAAAGA---TTAA--TT---TA-CTCTA-ACAGC----TA-----ATGTTCATTC---------ACGCACAT-TACGGT---C-------ATCCTCTAATCTACAGTTGTATTCT------CCGAAGCC--TAATT-CTGAAATGTTTCG-AAATCCG--T--T----TATTCA-GGATC
gi|6405 : GCTGCTGGACTTATTCTCG-ATAAAAACATA----T--G--ATAATCCTTCTACA--G--ATTTTATTC--------TCAGATGGAT-GACGTTTCC-TGAAAAAGTTAAATTTAA-AAAAGGCAGTACTCG-TGTAT-ATATCATT-T--AATGAGCGGGCTCCT-GTATATCT-CAAA-G---C--T--TTATATA-CTCTA-ACAGC----CA-----ATGTTCATAC--AAAATCT
gi|6406 : GCTGCTAGAATTATTCTCG-ATAAAAA-ATA----C--G--ATATTCCTTGTACA--T--AGTT-ATTCA-CAAAGCTTAAATGGAC-GAAA-TCCC-TGAAAGAGTTAAATTT-C-AAAAGGC
gi|6407 : TCA-A-C--AACAACTTGGTCCCA-GAGTATTTATAAA-A---TAAT--TT---TA-CCCCT-ACACC----AA-----ATATACATTCTAAAAATCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGGA----------CCAAAACC--AAAAT-T-------------------C--T--TAT-ATATTCT-GGATCCAAAATCT----GGA----ATTCC--CTTCCAAACCATATT-AAAAAGGC--------TCC-----ATCGGTTCAAGAACTTAAGAGATTTTATAT--ATATTTATATA------TAACAGTCCCCTGTCACAACAAAGAT-AATTT--GCATTGTC--TTACAAAA-AAT------TAAAC-------------TTGCAGT-TAGTTGATTCTT
gi|6408 : aagaatgtaattttgaacatttcaaatacGTATTTGCAAA-A---TAAT--TT---TA-CCCCA-ACACC----AA-----ATATAAATTCTAAAAATCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TT----TGTA----------CCAAAACC--GAAGT-TACAAACATATCGTAAAACTC--T--TAT-ATATTCT-AGATCCAAAATCT----GGA----ATTCC--CTTCCAAACCATGTT-AAAAATAC--------TTC-----ATCGGTTCAAGAATTTAAAAGATATTATATA-ACATTTAAATA------TAACAGTCCCTTGTCACAACAAAGATAAATTT--TCATTATC--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
gi|6409 : aATCCTAAAAATCTACGC---T-CACAAT---CAAA--TAATTCTTTA---TC----TGTA----------TCAAAAACTTAAGTT-TAAGAA------------------------ATATTCT-GGATCCAAAATCT----GGA----ATTTC--CTTCCAGAACATG
gi|6410 : AGT-TAGAATTGTACAGCAAGCCTC--T--CAT-AT--TCTCAGATCCAAAATTT----GGA----ATTCT--CTTCCAGAAGACATTAAAAAAAGG--------TTC-----TCCTGCTGAAGAATTTACGATATATTACATGCACATTTAAATAGAGCAGTAACATTCCCCTTCCATCACAAGAGTGA------TCAGTGTC--T
gi|6411 : ATAT----GGA----ATGAC--ATTCCTAACCATGTT-AAAAATCC--------TTC-----ATTAGTTCAAG--------AGAT--------------------------TAA---TTCCATATCACAACAAAGATATTTTTA-TCATTGTCTTTTACAAGGCCATTATTAATAAACTGCTAGATTCTCAT
gi|6412 : ATTTTACATA-ACATTAAAATA------TAACAGTCCCCTATCATAACAAAGAT-AATTTCATCACTGTC--TTAT--AA-CAT------TAAAGT--TACATCTTCATTGCAGCATAATTGATTTTT
gi|6413 : TACACA-AAATTCAAGT-------TA------CCCTGTCACAACAAA---AAATTT---CATTGTC--TTACACAA-CAT------TAAACT--TGTATCCTTATTGCAGC-CAAATGATTCTT
gi|6414 : AAATTTG-TTATTAA----TACAAAA-CAC------TAAACT--TGTATCCTCATTGCAGC-CA
Alignments
lowQualScore : 11111111111 1 1111 1 1111 111111111 2222222222 1 22222222 11111 111111 11 111111
lowQualScore : 5 0 0 5 3 3 777777 2 1 1 0 0 2 99999999999 55 0 3 0 66 2 555 3 1 2 44 2 3 1 666 1 1 1 3 1 1 6 4444 4 3 1 2 88888 0 44 555 3 3 1 77777 77777 1 4444 555 55 2 555 77777 777777777 6666666666 555 1 3 3 3 0 0 88 44 333 3 6666 6666 44 4 11111111 00000 1 4 0 66 111111 1 22 55 4 111111 55 4
lowQualScore : . . . . . . ...... . . . . . . ........... .. . . . .. . ... . . . .. . . . ... . . . . . . . .... . . . . ..... . .. ... . . . ..... ..... . .... ... .. . ... ..... ......... .......... ... . . . . . . .. .. ... . .... .... .. . ........ ..... . . . .. ...... . .. .. . ...... .. .
lowQualScore : 7 1 1 7 6 5 222222 5 7 0 8 8 2 66666666666 33 2 3 5 55 4 111 0 7 4 22 4 3 0 999 0 0 0 1 0 0 2 6666 5 1 0 4 66666 6 22 444 1 1 0 55555 77777 0 1111 444 88 5 444 55555 333333333 5555555555 555 0 1 9 2 7 3 55 22 333 1 5555 5555 22 0 55555555 00000 4 9 3 22 555555 3 33 00 0 555555 55 4
consensus : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAGA-GAGCTGCNAGACTTATCCTCG-ATAAAAACAT-----T--G--ATACTCCNTCTGCA--GAATT-ATTCA-ATGAGCTTAAATGGAT-GACGTTCCC-TGAAAGAGTNAAATNT-C-AAAAGGCNGTNCTNA-TGTNTAAGATCA-T-C--AACGACCTGGCCCCA-GNGTATCTGCAAA-A---TAATT--T---TA-CCCCA-ACANC----NA-----ATGTNCATTCTAAAAATCTACGC---T-CACGGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAANT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGAA----TTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTC--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
Reference ( family-705 ) : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAGA-GAGCTGCNAGACTTATCCTCG-ATAAAAACAT-----T--G--ATACTCCNTCTGCA--GAATT-ATTCA-ATGAGCTTAAATGGAT-GACGTTCCC-TGAAAGAGTNAAATNT-C-AAAAGGCNGTNCTNA-TGTNTAAGATCA-T-C--AACGACCTGGCCCCA-GNGTATCTGCAAA-A---TAATT--T---TA-CCCCA-ACANC----NA-----ATGTNCATTCTAAAAATCTACGC---T-CACGGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAANT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGAA----TTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTC--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
gi|6389 : ATTGCAAC-TCTGACCTATCTGA-CAACGT-ATTAAAATTTC------AAAAAC-GTGCTGCAAGACTTATCCTTG-ATAAAGACAT-----T--G--ATACACCATCTGAA--ACATT-ATTTA-ATGATCTAAAATGGAT-GAAATTCCA-TGAAAGAGTAGAATAT-A-AAAAGGCTATTTTAA-TGTTCAAGATCA-T-C--AACAACTTGGCCCCA-GAGTATTTGCAAA-A---TAATT--T---TA-CCCCA-ACACC----AA-----ATATACATTCTAAAAATCTGCGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAATT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGAA----TTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCAGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAAAAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTG--TTACAAAA-CAT------TAAACT--TGTATCCTTATTGCAGT-CAGTTGATTCTT
gi|6390 : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAAC-GTGCTGCAAGACTTATCCTTG-ATGAAGACAT-----T--G--ATGCACCATCTGAA--ACATT-TTTTA-ATGATCTAAAATGGAT-GAAATTCCA-TGAAAGAGTAGAATAT-A-AAGAGGCTATTTTAA-TGTTCAAGATCA-T-C--AACAACTTGGCCCCA-GAGTATTTGCAAA-A---TAACT--T---TA-CCCCA-ATACC----AA-----ATCTACATTCTAAAAATCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----AGGA----TTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCTGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTG--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
gi|6391 : ATTGCAAC-TCTGACCTATCCGA-CAACAT-ATTAAAATTTC------AAAAAC-GTGCTGCAAGACTTTTCCTTG-ATAAATACAT-----T--G--ATACACCATCTGAA--ACATA-ATTTA-ATGATCTAAAATGGAT-GAAATTCCA-TGAAGGAGTAGAATAT-A-AAAAGGCTATTTAAA-TGTTCAAGATCA-T-C--AACAACTTGGCCCCAAGAGTATTTGCAAA-A---TAATT--T---TA-ACCCA-ACACC----AA-----ATATACATTCTAAAAATATACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGAA----TTCC--CTTCCAAACTATGTG-AAAAATGC--------TTC-----ATCGGTTAAAGAACTT-ATAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAGCAAAGATAAATTT--TCATTGTC--TTACAAAA-CAT------TGAATT--TGTATCCTCATTGCAGT-CAGTTGACTC
gi|6392 : ATTGCAAC-TCTGACCTATCTGA-CAAAAC-ATAGAAATGTA------AAAAAC-GTGCTGCAAGAACTATCCTTG-ATAAAGACAT-----T--G--ATACACCATCTGAA--ACATT-ATTCA-ATGATCTACAATGGAT-GAAATTCTA-TGAAAATGTAGAATAT-T-AAATGGCTATTTTAA-TGTTCAAGATCA-T-C--AACACTTTTGCCCCA-GAGTATTTGCAAA-A---TAATT--T---TA-CCCCT-ACACCAAAATA-----ATGTACATTCTAAAAGTCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TGGAAACATATCGCAAAACTC--TTATAT-ATATTCT-GGATAAAAAATCT----TGAA----TTCC--CGTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAG---------------ATTTAAATA------AAACAGTCCCCTGTCAAAACAAAGATAAATGT--TCATTGTC--TTATAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-TAGTTGATTC
gi|6393 : ACTGCAAT-TCAGAACT-TTTGAACAATCT-CCTAAAATTCC------AAAAAC-GTGCAGCGAGAATAATACTCA-ACAAGACTAT--------G--ATTATCCATCTGCA--GAATT-ATTTG-ATCAACTTGGCTGGAT-GACATTCCA-GGAAAGAATCCAATAT-A-AAAAGGCTACTCTTG-T-TTTCAAATC--T-CTAAACAATCTGGCACCA-GCTTATCTCCAGA-A---CAAGT--T---CAGTTTTG-GGAGT----GACTTTCATG-GCATT-----AATTTAAGG---T-CA-GGTGACCAAAGTCAA----CTG---TA----TATT----------CCAAAGCC--TAATC-TTGAAATATATCAAAAAACAC--T--TTC-ATACTCT-GGCGTTAAAATTT----GGAA----CTCA--CTTCC
gi|6394 : ATTATAAC-TCTGACCTACAT-A-CAACAT-ATTGAAATTTA------ACAATC-GTGCTGCAAGACCTATCCTTG-ATAAAGACAT-----T--G--ACAC
gi|6395 : ATTGTAATGTTTGACTTGTA-GA-TAAAATTGTTAGA-TTTC------AAAGGA-GAGCTGCTAGACTTATTATCG-GTAAAAATAC--------G--ATACTCC---TACA--GAACT-ATTCA-CTTAGCTTAAATGGAT-GACGTTTCC-TGTAAGAGTTAAATTT-TAAAAAAGCAGTACTCA-TGTATAA-ATAA-T-CT-AATGACC-GGCTCCT-GTATATCT-CAAA-GACTTA--T--T---TA-CTCAA-ACAAC----TA-----ATGTTCAT----AAACTC-ACAA---T--ACGGT---T-------ATCCTCTA----A----TCTA----------C
gi|6396 : AT-AGTCAAATTCC------AAAAGA-GATCTGCTAGAATTATTTTTGGACAAAGATTA-----T--G--ACACACCGTT--CAATGAATT-ATTTT-ACGAATTGAAATTAAT-GGAATTCCC-TGATAGAGCTAAATAT-C-AAAAAGC
gi|6397 : AT-AGTCAAACTTC------AAAAGA-GATCTACTAGAATTATCCTGA-AAAAAAATATATATAT--G--ATATACAGTC--CAGTGAATC-ATTTT-CCGAATTTACATGGATGGAC-TTTCC-TGATAGAGTTAAATAT-C-AAAA-GCAATATTAA-TGTACAAAACAA-T-A--AAAGAATT-TCACCA-CCTTATCTTTGAG-AT--TCATT--T---AA-GTACATACATG----AA-----A--TACATTACCAAAACTTAAGA---TCCAC-AT---CAGA--AAGTTTGTTG---TT----AATC----------CTAAAGCC--AAACTGTAGTTATATA---TAAAATCT--T--TGTCATATTCG-GGAGCTGCAATTT----GGAA----TTCC--TTACC
gi|6398 : T-ATTAGG-TTTC------AAACGA-GAGCTGCTCGACTTATTCTCG-ATAAAAA--T-----T--ACAATACTACTTCTAAA--GAATT-ATTCA-AAGAGCTTAAATGAAT-GACG-TCTC-TGTAAGAGTTAAATTT-C-CAAAAGCAGAACTTA-TATATAAG-TCATT-T--AATGACCGGGCCCCA-G
gi|6399 : T-ATTAGA-TTTT------AAAAGAAGAGCTGCAAGACTTATACTTG-ATTCAG--AT-----TACG--GCACTTGTTCTGCT--GCACT-ATTTA-ATGAACTCAGTTGGAT-AACGTTTCT-TG-AAGGGT-AAATTT---AAAAAATAATTTTTGTTGTTTAAAAT
gi|6400 : TAAGATTTCTAAAAAAAAAAA-GGGCTGCATGACTCATCCTTG-AAAAAAACAT-----T--TC-ACACTCCTTCTGTT--GAACT-ATTTG-CTGAACTGGATTAGAT-TAC-TTCCCATGAAAGAGTAACATTC-C-AAAAGGC
gi|6401 : TAAGGTTTC------AAAAGA-AAGCAGCTAGACTTATTCCTG-GTAAAAACTA-----T--G--ATACTCCTGCAACA--TAATT-ATGCA-TTAAACTTATATGAAT-GAAGCTTGC-TGAAAGAGTTAAATTT-C-AAAAGGC
gi|6402 : TTTC------AAAAGA-GAGCTGCTAGACTTATTCTCG-ATAAAAA--T-----TACG--ATACTCCTTCTACA--GAATT-ATTCA-CAGAGCTTAAATGGAT-GACGTTTCC-TTAAAGAGTTAA-TAT-C-AAACAGCAGTACTTA-TATATAA-ATCA-TGT--GATGACCAGGCTCCT-GAATATCTCAAAA-A---TGTAT--T---TA-CTTTA-ACAGC----TA-----ATGTTCAT-----ACATGCACAC---T--ACGGT---CA-------TCCTCTG---TC----TACAGTTGTGTTCTCCTAAGCC--TAATT-CTGAAATATTTCG--AAATTCGTT--TGC-TTATTCA-GGCTCT----TCTTTGTGGAA----CTCT--ATTCCGTCTTATATA-AAAAATGCAAA-----TTCTTTTAATCAGTTCAA
gi|6403 : TTTC------AAAAGA-GAGCTGCTAGACTTATTCTCG-ATAAAAA--T-----TACG--ATACTCCTTCTACA--GAATT-ATTCA-CAGAGATTAAATGGAT-GAAGTTTCT-TGAAAGAGTAAAATTT-C-AAAAAGCAGTACTTA-TATATAA-ATCA-T-TT-AATTATCAGGCTCCA-GCATATCT-CGAA-----TATTTATT---TA-CTTCA-TCAGC----TA-----ATGTTCAT-----ACACGCACAC---T--ACGGT---CA-------TCCTCTAATCTACAGTTGTATTCT------CCTAAGCC--TAATT-CTGAAATTTTTCG--AAGTTCATT--TGC-TTATTCA-GGCTCTTCCATGT----GGAAATTATTCCGTCTT-------ATATA-AAAAATGCAAAATTTATTA-----ATCAGTTCAAAGCTTTA
gi|6404 : TTTC------AAAAGA-GAGCTGCTAAACTTATTCTAT-ATAAAATTAC--------G--ATACTCCTTCTACA--GAATT-ATTCACAT-AGCTTGAATGGAT-GTCGTTTCC-TGAAAGAGTAAAATTT-C-AAAAAGCCGTGCACG-TGTATAA-ATCA-T-TA-AATGACCAGGCTCCT-GCATAGCT-CAAAGA---TTAAT--T---TA-CTCTA-ACAGC----TA-----ATGTTCATTC---------ACGCACAT-TACGGT---C-------ATCCTCTAATCTACAGTTGTATTCT------CCGAAGCC--TAATT-CTGAAATGTTTCG-AAATCCG--T--T----TATTCA-GGATC
gi|6405 : GCTGCTGGACTTATTCTCG-ATAAAAACATA----T--G--ATAATCCTTCTACA--GATTTTATTC--------TCAGATGGAT-GACGTTTCC-TGAAAAAGTTAAATTTAA-AAAAGGCAGTACTCG-TGTAT-ATATCATT-T--AATGAGCGGGCTCCT-GTATATCT-CAAA-G---C--TT--TATATA-CTCTA-ACAGC----CA-----ATGTTCATAC--AAAATCT
gi|6406 : GCTGCTAGAATTATTCTCG-ATAAAAA-ATA----C--G--ATATTCCTTGTACA--TAGTT-ATTCA-CAAAGCTTAAATGGAC-GAAA-TCCC-TGAAAGAGTTAAATTT-C-AAAAGGC
gi|6407 : TCA-A-C--AACAACTTGGTCCCA-GAGTATTTATAAA-A---TAATT--T---TA-CCCCT-ACACC----AA-----ATATACATTCTAAAAATCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGGA----------CCAAAACC--AAAAT-T-------------------C--T--TAT-ATATTCT-GGATCCAAAATCT----GGAA----TTCC--CTTCCAAACCATATT-AAAAAGGC--------TCC-----ATCGGTTCAAGAACTTAAGAGATTTTATAT--ATATTTATATA------TAACAGTCCCCTGTCACAACAAAGAT-AATTT--GCATTGTC--TTACAAAA-AAT------TAAAC-------------TTGCAGT-TAGTTGATTCTT
gi|6408 : aagaatgtaattttgaacatttcaaatacGTATTTGCAAA-A---TAATT--T---TA-CCCCA-ACACC----AA-----ATATAAATTCTAAAAATCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TT----TGTA----------CCAAAACC--GAAGT-TACAAACATATCGTAAAACTC--T--TAT-ATATTCT-AGATCCAAAATCT----GGAA----TTCC--CTTCCAAACCATGTT-AAAAATAC--------TTC-----ATCGGTTCAAGAATTTAAAAGATATTATATA-ACATTTAAATA------TAACAGTCCCTTGTCACAACAAAGATAAATTT--TCATTATC--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
gi|6409 : aATCCTAAAAATCTACGC---T-CACAAT---CAAA--TAATTCTTTA---TC----TGTA----------TCAAAAACTTAAGTT-TAAGAA------------------------ATATTCT-GGATCCAAAATCT----GGAA----TTTC--CTTCCAGAACATG
gi|6410 : AGT-TAGAATTGTACAGCAAGCCTC--T--CAT-AT--TCTCAGATCCAAAATTT----GGAA----TTCT--CTTCCAGAAGACATTAAAAAAAGG--------TTC-----TCCTGCTGAAGAATTTACGATATATTACATGCACATTTAAATAGAGCAGTAACATTCCCCTTCCATCACAAGAGTGA------TCAGTGTC--T
gi|6411 : ATAT----GGAA----TGAC--ATTCCTAACCATGTT-AAAAATCC--------TTC-----ATTAGTTCAAG--------AGAT--------------------------TAA---TTCCATATCACAACAAAGATATTTTTA-TCATTGTCTTTTACAAGGCCATTATTAATAAACTGCTAGATTCTCAT
gi|6412 : ATTTTACATA-ACATTAAAATA------TAACAGTCCCCTATCATAACAAAGAT-AATTTCATCACTGTC--TTAT--AA-CAT------TAAAGT--TACATCTTCATTGCAGCATAATTGATTTTT
gi|6413 : TACACA-AAATTCAAGT-------TA------CCCTGTCACAACAAA---AAATTT---CATTGTC--TTACACAA-CAT------TAAACT--TGTATCCTTATTGCAGC-CAAATGATTCTT
gi|6414 : AAATTTG-TTATTAA----TACAAAA-CAC------TAAACT--TGTATCCTCATTGCAGC-CA
Alignments
lowQualScore : 11111111111 1 1111 1 1111 111111111 2222222222 1 22222222 11111 111111 11 111111
lowQualScore : 5 0 0 5 3 3 777777 2 1 1 0 0 2 99999999999 55 0 3 0 66 2 555 3 1 2 44 2 3 1 666 1 1 1 3 1 1 6 4444 4 3 1 2 88888 0 44 555 3 3 1 77777 77777 1 4444 555 55 2 555 77777 777777777 6666666666 555 1 3 3 3 0 0 88 44 333 3 6666 6666 44 4 11111111 00000 1 4 0 66 111111 1 22 55 4 111111 55 4
lowQualScore : . . . . . . ...... . . . . . . ........... .. . . . .. . ... . . . .. . . . ... . . . . . . . .... . . . . ..... . .. ... . . . ..... ..... . .... ... .. . ... ..... ......... .......... ... . . . . . . .. .. ... . .... .... .. . ........ ..... . . . .. ...... . .. .. . ...... .. .
lowQualScore : 7 1 1 7 6 5 222222 5 7 0 8 8 2 66666666666 33 2 3 5 55 4 111 0 7 4 22 4 3 0 999 0 0 0 1 0 0 2 6666 5 1 0 4 66666 6 22 444 1 1 0 55555 77777 0 1111 444 88 5 444 55555 333333333 5555555555 555 0 1 9 2 7 3 55 22 333 1 5555 5555 22 0 55555555 00000 4 9 3 22 555555 3 33 00 0 555555 55 4
consensus : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAGA-GAGCTGCNAGACTTATCCTCG-ATAAAAACAT-----T--G--ATACTCCNTCTGCA--GAATT-ATTCA-ATGAGCTTAAATGGAT-GACGTTCCC-TGAAAGAGTNAAATNT-C-AAAAGGCNGTNCTNA-TGTNTAAGATCA-T-C--AACGACCTGGCCCCA-GNGTATCTGCAAA-A---TAATT--T---TA-CCCCA-ACANC----NA-----ATGTNCATTCTAAAAATCTACGC---T-CACGGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAANT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGAA----TTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTC--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
Reference ( family-705 ) : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAGA-GAGCTGCNAGACTTATCCTCG-ATAAAAACAT-----T--G--ATACTCCNTCTGCA--GAATT-ATTCA-ATGAGCTTAAATGGAT-GACGTTCCC-TGAAAGAGTNAAATNT-C-AAAAGGCNGTNCTNA-TGTNTAAGATCA-T-C--AACGACCTGGCCCCA-GNGTATCTGCAAA-A---TAATT--T---TA-CCCCA-ACANC----NA-----ATGTNCATTCTAAAAATCTACGC---T-CACGGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAANT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGAA----TTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTC--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
gi|6389 : ATTGCAAC-TCTGACCTATCTGA-CAACGT-ATTAAAATTTC------AAAAAC-GTGCTGCAAGACTTATCCTTG-ATAAAGACAT-----T--G--ATACACCATCTGAA--ACATT-ATTTA-ATGATCTAAAATGGAT-GAAATTCCA-TGAAAGAGTAGAATAT-A-AAAAGGCTATTTTAA-TGTTCAAGATCA-T-C--AACAACTTGGCCCCA-GAGTATTTGCAAA-A---TAATT--T---TA-CCCCA-ACACC----AA-----ATATACATTCTAAAAATCTGCGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAATT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGAA----TTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCAGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAAAAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTG--TTACAAAA-CAT------TAAACT--TGTATCCTTATTGCAGT-CAGTTGATTCTT
gi|6390 : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAAC-GTGCTGCAAGACTTATCCTTG-ATGAAGACAT-----T--G--ATGCACCATCTGAA--ACATT-TTTTA-ATGATCTAAAATGGAT-GAAATTCCA-TGAAAGAGTAGAATAT-A-AAGAGGCTATTTTAA-TGTTCAAGATCA-T-C--AACAACTTGGCCCCA-GAGTATTTGCAAA-A---TAACT--T---TA-CCCCA-ATACC----AA-----ATCTACATTCTAAAAATCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----AGGA----TTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCTGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTG--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
gi|6391 : ATTGCAAC-TCTGACCTATCCGA-CAACAT-ATTAAAATTTC------AAAAAC-GTGCTGCAAGACTTTTCCTTG-ATAAATACAT-----T--G--ATACACCATCTGAA--ACATA-ATTTA-ATGATCTAAAATGGAT-GAAATTCCA-TGAAGGAGTAGAATAT-A-AAAAGGCTATTTAAA-TGTTCAAGATCA-T-C--AACAACTTGGCCCCAAGAGTATTTGCAAA-A---TAATT--T---TA-ACCCA-ACACC----AA-----ATATACATTCTAAAAATATACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGAA----TTCC--CTTCCAAACTATGTG-AAAAATGC--------TTC-----ATCGGTTAAAGAACTT-ATAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAGCAAAGATAAATTT--TCATTGTC--TTACAAAA-CAT------TGAATT--TGTATCCTCATTGCAGT-CAGTTGACTC
gi|6392 : ATTGCAAC-TCTGACCTATCTGA-CAAAAC-ATAGAAATGTA------AAAAAC-GTGCTGCAAGAACTATCCTTG-ATAAAGACAT-----T--G--ATACACCATCTGAA--ACATT-ATTCA-ATGATCTACAATGGAT-GAAATTCTA-TGAAAATGTAGAATAT-T-AAATGGCTATTTTAA-TGTTCAAGATCA-T-C--AACACTTTTGCCCCA-GAGTATTTGCAAA-A---TAATT--T---TA-CCCCT-ACACCAAAATA-----ATGTACATTCTAAAAGTCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TGGAAACATATCGCAAAACTC--TTATAT-ATATTCT-GGATAAAAAATCT----TGAA----TTCC--CGTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAG---------------ATTTAAATA------AAACAGTCCCCTGTCAAAACAAAGATAAATGT--TCATTGTC--TTATAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-TAGTTGATTC
gi|6393 : ACTGCAAT-TCAGAACT-TTTGAACAATCT-CCTAAAATTCC------AAAAAC-GTGCAGCGAGAATAATACTCA-ACAAGACTAT--------G--ATTATCCATCTGCA--GAATT-ATTTG-ATCAACTTGGCTGGAT-GACATTCCA-GGAAAGAATCCAATAT-A-AAAAGGCTACTCTTG-T-TTTCAAATC--T-CTAAACAATCTGGCACCA-GCTTATCTCCAGA-A---CAAGT--T---CAGTTTTG-GGAGT----GACTTTCATG-GCATT-----AATTTAAGG---T-CA-GGTGACCAAAGTCAA----CTG---TA----TATT----------CCAAAGCC--TAATC-TTGAAATATATCAAAAAACAC--T--TTC-ATACTCT-GGCGTTAAAATTT----GGAA----CTCA--CTTCC
gi|6394 : ATTATAAC-TCTGACCTACAT-A-CAACAT-ATTGAAATTTA------ACAATC-GTGCTGCAAGACCTATCCTTG-ATAAAGACAT-----T--G--ACAC
gi|6395 : ATTGTAATGTTTGACTTGTA-GA-TAAAATTGTTAGA-TTTC------AAAGGA-GAGCTGCTAGACTTATTATCG-GTAAAAATAC--------G--ATACTCC---TACA--GAACT-ATTCA-CTTAGCTTAAATGGAT-GACGTTTCC-TGTAAGAGTTAAATTT-TAAAAAAGCAGTACTCA-TGTATAA-ATAA-T-CT-AATGACC-GGCTCCT-GTATATCT-CAAA-GACTTA--T--T---TA-CTCAA-ACAAC----TA-----ATGTTCAT----AAACTC-ACAA---T--ACGGT---T-------ATCCTCTA----A----TCTA----------C
gi|6396 : AT-AGTCAAATTCC------AAAAGA-GATCTGCTAGAATTATTTTTGGACAAAGATTA-----T--G--ACACACCGTT--CAATGAATT-ATTTT-ACGAATTGAAATTAAT-GGAATTCCC-TGATAGAGCTAAATAT-C-AAAAAGC
gi|6397 : AT-AGTCAAACTTC------AAAAGA-GATCTACTAGAATTATCCTGA-AAAAAAATATATATAT--G--ATATACAGTC--CAGTGAATC-ATTTT-CCGAATTTACATGGATGGAC-TTTCC-TGATAGAGTTAAATAT-C-AAAA-GCAATATTAA-TGTACAAAACAA-T-A--AAAGAATT-TCACCA-CCTTATCTTTGAG-AT--TCATT--T---AA-GTACATACATG----AA-----A--TACATTACCAAAACTTAAGA---TCCAC-AT---CAGA--AAGTTTGTTG---TT----AATC----------CTAAAGCC--AAACTGTAGTTATATA---TAAAATCT--T--TGTCATATTCG-GGAGCTGCAATTT----GGAA----TTCC--TTACC
gi|6398 : T-ATTAGG-TTTC------AAACGA-GAGCTGCTCGACTTATTCTCG-ATAAAAA--T-----T--ACAATACTACTTCTAAA--GAATT-ATTCA-AAGAGCTTAAATGAAT-GACG-TCTC-TGTAAGAGTTAAATTT-C-CAAAAGCAGAACTTA-TATATAAG-TCATT-T--AATGACCGGGCCCCA-G
gi|6399 : T-ATTAGA-TTTT------AAAAGAAGAGCTGCAAGACTTATACTTG-ATTCAG--AT-----TACG--GCACTTGTTCTGCT--GCACT-ATTTA-ATGAACTCAGTTGGAT-AACGTTTCT-TG-AAGGGT-AAATTT---AAAAAATAATTTTTGTTGTTTAAAAT
gi|6400 : TAAGATTTCTAAAAAAAAAAA-GGGCTGCATGACTCATCCTTG-AAAAAAACAT-----T--TC-ACACTCCTTCTGTT--GAACT-ATTTG-CTGAACTGGATTAGAT-TAC-TTCCCATGAAAGAGTAACATTC-C-AAAAGGC
gi|6401 : TAAGGTTTC------AAAAGA-AAGCAGCTAGACTTATTCCTG-GTAAAAACTA-----T--G--ATACTCCTGCAACA--TAATT-ATGCA-TTAAACTTATATGAAT-GAAGCTTGC-TGAAAGAGTTAAATTT-C-AAAAGGC
gi|6402 : TTTC------AAAAGA-GAGCTGCTAGACTTATTCTCG-ATAAAAA--T-----TACG--ATACTCCTTCTACA--GAATT-ATTCA-CAGAGCTTAAATGGAT-GACGTTTCC-TTAAAGAGTTAA-TAT-C-AAACAGCAGTACTTA-TATATAA-ATCA-TGT--GATGACCAGGCTCCT-GAATATCTCAAAA-A---TGTAT--T---TA-CTTTA-ACAGC----TA-----ATGTTCAT-----ACATGCACAC---T--ACGGT---CA-------TCCTCTG---TC----TACAGTTGTGTTCTCCTAAGCC--TAATT-CTGAAATATTTCG--AAATTCGTT--TGC-TTATTCA-GGCTCT----TCTTTGTGGAA----CTCT--ATTCCGTCTTATATA-AAAAATGCAAA-----TTCTTTTAATCAGTTCAA
gi|6403 : TTTC------AAAAGA-GAGCTGCTAGACTTATTCTCG-ATAAAAA--T-----TACG--ATACTCCTTCTACA--GAATT-ATTCA-CAGAGATTAAATGGAT-GAAGTTTCT-TGAAAGAGTAAAATTT-C-AAAAAGCAGTACTTA-TATATAA-ATCA-T-TT-AATTATCAGGCTCCA-GCATATCT-CGAA-----TATTTATT---TA-CTTCA-TCAGC----TA-----ATGTTCAT-----ACACGCACAC---T--ACGGT---CA-------TCCTCTAATCTACAGTTGTATTCT------CCTAAGCC--TAATT-CTGAAATTTTTCG--AAGTTCATT--TGC-TTATTCA-GGCTCTTCCATGT----GGAAATTATTCCGTCTT-------ATATA-AAAAATGCAAAATTTATTA-----ATCAGTTCAAAGCTTTA
gi|6404 : TTTC------AAAAGA-GAGCTGCTAAACTTATTCTAT-ATAAAATTAC--------G--ATACTCCTTCTACA--GAATT-ATTCACAT-AGCTTGAATGGAT-GTCGTTTCC-TGAAAGAGTAAAATTT-C-AAAAAGCCGTGCACG-TGTATAA-ATCA-T-TA-AATGACCAGGCTCCT-GCATAGCT-CAAAGA---TTAAT--T---TA-CTCTA-ACAGC----TA-----ATGTTCATTC---------ACGCACAT-TACGGT---C-------ATCCTCTAATCTACAGTTGTATTCT------CCGAAGCC--TAATT-CTGAAATGTTTCG-AAATCCG--T--T----TATTCA-GGATC
gi|6405 : GCTGCTGGACTTATTCTCG-ATAAAAACATA----T--G--ATAATCCTTCTACA--GATTTTATTC--------TCAGATGGAT-GACGTTTCC-TGAAAAAGTTAAATTTAA-AAAAGGCAGTACTCG-TGTAT-ATATCATT-T--AATGAGCGGGCTCCT-GTATATCT-CAAA-G---C--TT--TATATA-CTCTA-ACAGC----CA-----ATGTTCATAC--AAAATCT
gi|6406 : GCTGCTAGAATTATTCTCG-ATAAAAA-ATA----C--G--ATATTCCTTGTACA--TAGTT-ATTCA-CAAAGCTTAAATGGAC-GAAA-TCCC-TGAAAGAGTTAAATTT-C-AAAAGGC
gi|6407 : TCA-A-C--AACAACTTGGTCCCA-GAGTATTTATAAA-A---TAATT--T---TA-CCCCT-ACACC----AA-----ATATACATTCTAAAAATCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGGA----------CCAAAACC--AAAAT-T-------------------C--T--TAT-ATATTCT-GGATCCAAAATCT----GGAA----TTCC--CTTCCAAACCATATT-AAAAAGGC--------TCC-----ATCGGTTCAAGAACTTAAGAGATTTTATAT--ATATTTATATA------TAACAGTCCCCTGTCACAACAAAGAT-AATTT--GCATTGTC--TTACAAAA-AAT------TAAAC-------------TTGCAGT-TAGTTGATTCTT
gi|6408 : aagaatgtaattttgaacatttcaaatacGTATTTGCAAA-A---TAATT--T---TA-CCCCA-ACACC----AA-----ATATAAATTCTAAAAATCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TT----TGTA----------CCAAAACC--GAAGT-TACAAACATATCGTAAAACTC--T--TAT-ATATTCT-AGATCCAAAATCT----GGAA----TTCC--CTTCCAAACCATGTT-AAAAATAC--------TTC-----ATCGGTTCAAGAATTTAAAAGATATTATATA-ACATTTAAATA------TAACAGTCCCTTGTCACAACAAAGATAAATTT--TCATTATC--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
gi|6409 : aATCCTAAAAATCTACGC---T-CACAAT---CAAA--TAATTCTTTA---TC----TGTA----------TCAAAAACTTAAGTT-TAAGAA------------------------ATATTCT-GGATCCAAAATCT----GGAA----TTTC--CTTCCAGAACATG
gi|6410 : AGT-TAGAATTGTACAGCAAGCCTC--T--CAT-AT--TCTCAGATCCAAAATTT----GGAA----TTCT--CTTCCAGAAGACATTAAAAAAAGG--------TTC-----TCCTGCTGAAGAATTTACGATATATTACATGCACATTTAAATAGAGCAGTAACATTCCCCTTCCATCACAAGAGTGA------TCAGTGTC--T
gi|6411 : ATAT----GGAA----TGAC--ATTCCTAACCATGTT-AAAAATCC--------TTC-----ATTAGTTCAAG--------AGAT--------------------------TAA---TTCCATATCACAACAAAGATATTTTTA-TCATTGTCTTTTACAAGGCCATTATTAATAAACTGCTAGATTCTCAT
gi|6412 : ATTTTACATA-ACATTAAAATA------TAACAGTCCCCTATCATAACAAAGAT-AATTTCATCACTGTC--TTAT--AA-CAT------TAAAGT--TACATCTTCATTGCAGCATAATTGATTTTT
gi|6413 : TACACA-AAATTCAAGT-------TA------CCCTGTCACAACAAA---AAATTT---CATTGTC--TTACACAA-CAT------TAAACT--TGTATCCTTATTGCAGC-CAAATGATTCTT
gi|6414 : AAATTTG-TTATTAA----TACAAAA-CAC------TAAACT--TGTATCCTCATTGCAGC-CA
blockSeqs : G A T A TAAAAA A T A G TATATATAT CA A AT T CAT T A G AA A A A TA T T A T T G T CTA T A A G GACT AT ATA G T C AAAAT CTTTC A TCTA ACA CC A GAC AAGTC ATCTACAGT GTTGTGTTCT TTA G G A C T GT TA GTC C TTGT ATTA GT A AAAATTTA TTTTA T A GC GAGCAG A CA TT C TATTAA GC A
blockSeqs : . . . A . . T A . ATTAC C A GT . AT T A . AA . A A AA T T A . T G T CT T . A G AT . . . . C A . A TCTA . C A . AAT ATCTACAGT TTCT A G . A C T AT . AT . . . . . AAA . G A A . A A . . . . .
blockSeqs : . . . A . . T A . CATAT . A . . AT T A . AA . A A A T T A . T G . GT T . A G GA . . . . C A . A TCTA . C A . AAT TA TTCT A G . G C C . . AT . . . . . . . G T A . A G . . . . .
blockSeqs : . . . A . . T G . CATT . A . . AT A T . CA . C A A T T T . T A . TT T . C C A . . . . G G . G TACC . C G . AAT TA . A T . T T A . . AT . . . . . . . A A A . A . . . . . .
blockSeqs : . . . A . . T A . CATT . G . . AT G T . CG . T T T A A C . A A . TA T . T T A . . . . A T . T TCTA . C G . GAA TA . T C . A T T . . TC . . . . . . . A A A . G . . . . . .
blockSeqs : . . . A . . A T . CATT . G . . CT A G . AA . T A A A A A . A G . C G . C C A . . . . T A . A TCTA . T G . AAT TA . A T . T T T . . GC . . . . . . . G T A . A . . . . . .
blockSeqs : . A . . A T . CATT . T . . AC A T . CG . T A C A A T . A A . C A . A A A . . . . G T . T CCTA . C G . AAT TT . T T . T T C . . GC . . . . . . . G . . . A . . . . . .
blockSeqs : . A . . A T . TTAT . T . . CC G T . CG . T T C A T T . T T . C A . C G A . . . . G T . T TC . C G . AAT TC . T T . T T . . . AT . . . . . . . T . . . A . . . . . .
blockSeqs : . G . . A T . CATT . T . . AA A C . AG . A T C A A T . A . . A A . C . G . . . . G T . T AC . C A . . TA . T A . A C . . . AT . . . . . . . A . . . . . . . .
blockSeqs : . . . . A A . CTAT . T . . AT A G . CG . T T C A A T . A . . T G . T . A . . . . G C . T T . . A . . TT . A G . A T . . . AT . . . . . . .
blockSeqs : . . . G A . TTAC . T . . CT A T . AG . T T C C G C . A . . T T . A . A . . . . C A . A . . . A . . TC . G T . A . . . . . . . . .
blockSeqs : . . . A T . TTAC . T . . TT G T . CG . A A C A A C . A . . C . . . . . . . . C A . A . . . . . . A . G . . . . . . . . . . .
blockSeqs : . . A T . ATAC . T . . CA G T . CG . A T C .
blockSeqs : . . A T . TAT . T . . CA G T . AA . T T C
blockSeqs : . . A T . TAC . T . . CA G C . C . T T C
blockSeqs : T . TAC . . . . . . T . C . . T .
blockSeqs : T . TT .
blockSeqCons :
originalCons : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAGA-GAGCTGCNAGACTTATCCTCG-ATAAAAACAT-----T--G--ATACTCCNTCTGCA--GAATT-ATTCA-ATGAGCTTAAATGGAT-GACGTTCCC-TGAAAGAGTNAAATNT-C-AAAAGGCNGTNCTNA-TGTNTAAGATCA-T-C--AACGACCTGGCCCCA-GNGTATCTGCAAA-A---TAATT--T---TA-CCCCA-ACANC----NA-----ATGTNCATTCTAAAAATCTACGC---T-CACGGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAANT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGAA----TTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTC--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
finalCons : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAGA-GAGCTGCNAGACTTATCCTCG-ATAAAAACAT-----T--G--ATACTCCNTCTGCA--GAATT-ATTCA-ATGAGCTTAAATGGAT-GACGTTCCC-TGAAAGAGTNAAATNT-C-AAAAGGCNGTNCTNA-TGTNTAAGATCA-T-C--AACGACCTGGCCCCA-GNGTATCTGCAAA-A---TAATT--T---TA-CCCCA-ACANC----NA-----ATGTNCATTCTAAAAATCTACGC---T-CACGGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAANT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGAA----TTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTC--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
Alignments
lowQualScore : 11111111111 1 1111 1 1111 111111111 2222222222 1 22222222 11111 111111 11 111111
lowQualScore : 5 0 0 5 3 3 777777 2 1 1 0 0 2 99999999999 55 0 3 0 66 2 555 3 1 2 44 2 3 1 666 1 1 1 3 1 1 6 4444 4 3 1 2 88888 0 44 555 3 3 1 77777 77777 1 4444 555 55 2 555 77777 777777777 6666666666 555 1 3 3 3 0 0 88 44 333 3 6666 6666 44 4 11111111 00000 1 4 0 66 111111 1 22 55 4 111111 55 4
lowQualScore : . . . . . . ...... . . . . . . ........... .. . . . .. . ... . . . .. . . . ... . . . . . . . .... . . . . ..... . .. ... . . . ..... ..... . .... ... .. . ... ..... ......... .......... ... . . . . . . .. .. ... . .... .... .. . ........ ..... . . . .. ...... . .. .. . ...... .. .
lowQualScore : 7 1 1 7 6 5 222222 5 7 0 8 8 2 66666666666 33 2 3 5 55 4 111 0 7 4 22 4 3 0 999 0 0 0 1 0 0 2 6666 5 1 0 4 66666 6 22 444 1 1 0 55555 77777 0 1111 444 88 5 444 55555 333333333 5555555555 555 0 1 9 2 7 3 55 22 333 1 5555 5555 22 0 55555555 00000 4 9 3 22 555555 3 33 00 0 555555 55 4
consensus : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAGA-GAGCTGCNAGACTTATCCTCG-ATAAAAACAT-----T--G--ATACTCCNTCTGCA--GAATT-ATTCA-ATGAGCTTAAATGGAT-GACGTTCCC-TGAAAGAGTNAAATNT-C-AAAAGGCNGTNCTNA-TGTNTAAGATCA-T-C--AACGACCTGGCCCCA-GNGTATCTGCAAA-A---TAATT--T---TA-CCCCA-ACANC----NA-----ATGTNCATTCTAAAAATCTACGC---T-CACGGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAANT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGAA----TTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTC--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
Reference ( family-705 ) : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAGA-GAGCTGCNAGACTTATCCTCG-ATAAAAACAT-----T--G--ATACTCCNTCTGCA--GAATT-ATTCA-ATGAGCTTAAATGGAT-GACGTTCCC-TGAAAGAGTNAAATNT-C-AAAAGGCNGTNCTNA-TGTNTAAGATCA-T-C--AACGACCTGGCCCCA-GNGTATCTGCAAA-A---TAATT--T---TA-CCCCA-ACANC----NA-----ATGTNCATTCTAAAAATCTACGC---T-CACGGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAANT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGAA----TTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTC--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
gi|6389 : ATTGCAAC-TCTGACCTATCTGA-CAACGT-ATTAAAATTTC------AAAAAC-GTGCTGCAAGACTTATCCTTG-ATAAAGACAT-----T--G--ATACACCATCTGAA--ACATT-ATTTA-ATGATCTAAAATGGAT-GAAATTCCA-TGAAAGAGTAGAATAT-A-AAAAGGCTATTTTAA-TGTTCAAGATCA-T-C--AACAACTTGGCCCCA-GAGTATTTGCAAA-A---TAATT--T---TA-CCCCA-ACACC----AA-----ATATACATTCTAAAAATCTGCGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAATT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGAA----TTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCAGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAAAAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTG--TTACAAAA-CAT------TAAACT--TGTATCCTTATTGCAGT-CAGTTGATTCTT
gi|6390 : ATTGCAAC-TCTGACCTATCTGA-CAACAT-ATTAAAATTTC------AAAAAC-GTGCTGCAAGACTTATCCTTG-ATGAAGACAT-----T--G--ATGCACCATCTGAA--ACATT-TTTTA-ATGATCTAAAATGGAT-GAAATTCCA-TGAAAGAGTAGAATAT-A-AAGAGGCTATTTTAA-TGTTCAAGATCA-T-C--AACAACTTGGCCCCA-GAGTATTTGCAAA-A---TAACT--T---TA-CCCCA-ATACC----AA-----ATCTACATTCTAAAAATCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----AGGA----TTCC--CTTCCAAACCATGTT-AAAAATGC--------TTC-----ATCTGTTCAAGAATTTAAGAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAACAAAGATAAATTT--TCATTGTG--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
gi|6391 : ATTGCAAC-TCTGACCTATCCGA-CAACAT-ATTAAAATTTC------AAAAAC-GTGCTGCAAGACTTTTCCTTG-ATAAATACAT-----T--G--ATACACCATCTGAA--ACATA-ATTTA-ATGATCTAAAATGGAT-GAAATTCCA-TGAAGGAGTAGAATAT-A-AAAAGGCTATTTAAA-TGTTCAAGATCA-T-C--AACAACTTGGCCCCAAGAGTATTTGCAAA-A---TAATT--T---TA-ACCCA-ACACC----AA-----ATATACATTCTAAAAATATACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TAGAAACATATCGTAAAACTC--T--TAT-ATATTCT-GGATCCAAAATCT----GGAA----TTCC--CTTCCAAACTATGTG-AAAAATGC--------TTC-----ATCGGTTAAAGAACTT-ATAGATATTATATA-ACATTTAAATA------TAACAGTCCCCTGTCACAGCAAAGATAAATTT--TCATTGTC--TTACAAAA-CAT------TGAATT--TGTATCCTCATTGCAGT-CAGTTGACTC
gi|6392 : ATTGCAAC-TCTGACCTATCTGA-CAAAAC-ATAGAAATGTA------AAAAAC-GTGCTGCAAGAACTATCCTTG-ATAAAGACAT-----T--G--ATACACCATCTGAA--ACATT-ATTCA-ATGATCTACAATGGAT-GAAATTCTA-TGAAAATGTAGAATAT-T-AAATGGCTATTTTAA-TGTTCAAGATCA-T-C--AACACTTTTGCCCCA-GAGTATTTGCAAA-A---TAATT--T---TA-CCCCT-ACACCAAAATA-----ATGTACATTCTAAAAGTCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGTA----------CCAAAACC--AAAGT-TGGAAACATATCGCAAAACTC--TTATAT-ATATTCT-GGATAAAAAATCT----TGAA----TTCC--CGTCCAAACCATGTT-AAAAATGC--------TTC-----ATCGGTTCAAGAATTTAAG---------------ATTTAAATA------AAACAGTCCCCTGTCAAAACAAAGATAAATGT--TCATTGTC--TTATAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-TAGTTGATTC
gi|6393 : ACTGCAAT-TCAGAACT-TTTGAACAATCT-CCTAAAATTCC------AAAAAC-GTGCAGCGAGAATAATACTCA-ACAAGACTAT--------G--ATTATCCATCTGCA--GAATT-ATTTG-ATCAACTTGGCTGGAT-GACATTCCA-GGAAAGAATCCAATAT-A-AAAAGGCTACTCTTG-T-TTTCAAATC--T-CTAAACAATCTGGCACCA-GCTTATCTCCAGA-A---CAAGT--T---CAGTTTTG-GGAGT----GACTTTCATG-GCATT-----AATTTAAGG---T-CA-GGTGACCAAAGTCAA----CTG---TA----TATT----------CCAAAGCC--TAATC-TTGAAATATATCAAAAAACAC--T--TTC-ATACTCT-GGCGTTAAAATTT----GGAA----CTCA--CTTCC
gi|6394 : ATTATAAC-TCTGACCTACAT-A-CAACAT-ATTGAAATTTA------ACAATC-GTGCTGCAAGACCTATCCTTG-ATAAAGACAT-----T--G--ACAC
gi|6395 : ATTGTAATGTTTGACTTGTA-GA-TAAAATTGTTAGA-TTTC------AAAGGA-GAGCTGCTAGACTTATTATCG-GTAAAAATAC--------G--ATACTCC---TACA--GAACT-ATTCA-CTTAGCTTAAATGGAT-GACGTTTCC-TGTAAGAGTTAAATTT-TAAAAAAGCAGTACTCA-TGTATAA-ATAA-T-CT-AATGACC-GGCTCCT-GTATATCT-CAAA-GACTTA--T--T---TA-CTCAA-ACAAC----TA-----ATGTTCAT----AAACTC-ACAA---T--ACGGT---T-------ATCCTCTA----A----TCTA----------C
gi|6396 : AT-AGTCAAATTCC------AAAAGA-GATCTGCTAGAATTATTTTTGGACAAAGATTA-----T--G--ACACACCGTT--CAATGAATT-ATTTT-ACGAATTGAAATTAAT-GGAATTCCC-TGATAGAGCTAAATAT-C-AAAAAGC
gi|6397 : AT-AGTCAAACTTC------AAAAGA-GATCTACTAGAATTATCCTGA-AAAAAAATATATATAT--G--ATATACAGTC--CAGTGAATC-ATTTT-CCGAATTTACATGGATGGAC-TTTCC-TGATAGAGTTAAATAT-C-AAAA-GCAATATTAA-TGTACAAAACAA-T-A--AAAGAATT-TCACCA-CCTTATCTTTGAG-AT--TCATT--T---AA-GTACATACATG----AA-----A--TACATTACCAAAACTTAAGA---TCCAC-AT---CAGA--AAGTTTGTTG---TT----AATC----------CTAAAGCC--AAACTGTAGTTATATA---TAAAATCT--T--TGTCATATTCG-GGAGCTGCAATTT----GGAA----TTCC--TTACC
gi|6398 : T-ATTAGG-TTTC------AAACGA-GAGCTGCTCGACTTATTCTCG-ATAAAAA--T-----T--ACAATACTACTTCTAAA--GAATT-ATTCA-AAGAGCTTAAATGAAT-GACG-TCTC-TGTAAGAGTTAAATTT-C-CAAAAGCAGAACTTA-TATATAAG-TCATT-T--AATGACCGGGCCCCA-G
gi|6399 : T-ATTAGA-TTTT------AAAAGAAGAGCTGCAAGACTTATACTTG-ATTCAG--AT-----TACG--GCACTTGTTCTGCT--GCACT-ATTTA-ATGAACTCAGTTGGAT-AACGTTTCT-TG-AAGGGT-AAATTT---AAAAAATAATTTTTGTTGTTTAAAAT
gi|6400 : TAAGATTTCTAAAAAAAAAAA-GGGCTGCATGACTCATCCTTG-AAAAAAACAT-----T--TC-ACACTCCTTCTGTT--GAACT-ATTTG-CTGAACTGGATTAGAT-TAC-TTCCCATGAAAGAGTAACATTC-C-AAAAGGC
gi|6401 : TAAGGTTTC------AAAAGA-AAGCAGCTAGACTTATTCCTG-GTAAAAACTA-----T--G--ATACTCCTGCAACA--TAATT-ATGCA-TTAAACTTATATGAAT-GAAGCTTGC-TGAAAGAGTTAAATTT-C-AAAAGGC
gi|6402 : TTTC------AAAAGA-GAGCTGCTAGACTTATTCTCG-ATAAAAA--T-----TACG--ATACTCCTTCTACA--GAATT-ATTCA-CAGAGCTTAAATGGAT-GACGTTTCC-TTAAAGAGTTAA-TAT-C-AAACAGCAGTACTTA-TATATAA-ATCA-TGT--GATGACCAGGCTCCT-GAATATCTCAAAA-A---TGTAT--T---TA-CTTTA-ACAGC----TA-----ATGTTCAT-----ACATGCACAC---T--ACGGT---CA-------TCCTCTG---TC----TACAGTTGTGTTCTCCTAAGCC--TAATT-CTGAAATATTTCG--AAATTCGTT--TGC-TTATTCA-GGCTCT----TCTTTGTGGAA----CTCT--ATTCCGTCTTATATA-AAAAATGCAAA-----TTCTTTTAATCAGTTCAA
gi|6403 : TTTC------AAAAGA-GAGCTGCTAGACTTATTCTCG-ATAAAAA--T-----TACG--ATACTCCTTCTACA--GAATT-ATTCA-CAGAGATTAAATGGAT-GAAGTTTCT-TGAAAGAGTAAAATTT-C-AAAAAGCAGTACTTA-TATATAA-ATCA-T-TT-AATTATCAGGCTCCA-GCATATCT-CGAA-----TATTTATT---TA-CTTCA-TCAGC----TA-----ATGTTCAT-----ACACGCACAC---T--ACGGT---CA-------TCCTCTAATCTACAGTTGTATTCT------CCTAAGCC--TAATT-CTGAAATTTTTCG--AAGTTCATT--TGC-TTATTCA-GGCTCTTCCATGT----GGAAATTATTCCGTCTT-------ATATA-AAAAATGCAAAATTTATTA-----ATCAGTTCAAAGCTTTA
gi|6404 : TTTC------AAAAGA-GAGCTGCTAAACTTATTCTAT-ATAAAATTAC--------G--ATACTCCTTCTACA--GAATT-ATTCACAT-AGCTTGAATGGAT-GTCGTTTCC-TGAAAGAGTAAAATTT-C-AAAAAGCCGTGCACG-TGTATAA-ATCA-T-TA-AATGACCAGGCTCCT-GCATAGCT-CAAAGA---TTAAT--T---TA-CTCTA-ACAGC----TA-----ATGTTCATTC---------ACGCACAT-TACGGT---C-------ATCCTCTAATCTACAGTTGTATTCT------CCGAAGCC--TAATT-CTGAAATGTTTCG-AAATCCG--T--T----TATTCA-GGATC
gi|6405 : GCTGCTGGACTTATTCTCG-ATAAAAACATA----T--G--ATAATCCTTCTACA--GATTTTATTC--------TCAGATGGAT-GACGTTTCC-TGAAAAAGTTAAATTTAA-AAAAGGCAGTACTCG-TGTAT-ATATCATT-T--AATGAGCGGGCTCCT-GTATATCT-CAAA-G---C--TT--TATATA-CTCTA-ACAGC----CA-----ATGTTCATAC--AAAATCT
gi|6406 : GCTGCTAGAATTATTCTCG-ATAAAAA-ATA----C--G--ATATTCCTTGTACA--TAGTT-ATTCA-CAAAGCTTAAATGGAC-GAAA-TCCC-TGAAAGAGTTAAATTT-C-AAAAGGC
gi|6407 : TCA-A-C--AACAACTTGGTCCCA-GAGTATTTATAAA-A---TAATT--T---TA-CCCCT-ACACC----AA-----ATATACATTCTAAAAATCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TA----TGGA----------CCAAAACC--AAAAT-T-------------------C--T--TAT-ATATTCT-GGATCCAAAATCT----GGAA----TTCC--CTTCCAAACCATATT-AAAAAGGC--------TCC-----ATCGGTTCAAGAACTTAAGAGATTTTATAT--ATATTTATATA------TAACAGTCCCCTGTCACAACAAAGAT-AATTT--GCATTGTC--TTACAAAA-AAT------TAAAC-------------TTGCAGT-TAGTTGATTCTT
gi|6408 : aagaatgtaattttgaacatttcaaatacGTATTTGCAAA-A---TAATT--T---TA-CCCCA-ACACC----AA-----ATATAAATTCTAAAAATCTACGC---T-CACAGT---CAAA--TAATTCTCTA---TT----TGTA----------CCAAAACC--GAAGT-TACAAACATATCGTAAAACTC--T--TAT-ATATTCT-AGATCCAAAATCT----GGAA----TTCC--CTTCCAAACCATGTT-AAAAATAC--------TTC-----ATCGGTTCAAGAATTTAAAAGATATTATATA-ACATTTAAATA------TAACAGTCCCTTGTCACAACAAAGATAAATTT--TCATTATC--TTACAAAA-CAT------TAAACT--TGTATCCTCATTGCAGT-CAGTTGATTCTT
gi|6409 : aATCCTAAAAATCTACGC---T-CACAAT---CAAA--TAATTCTTTA---TC----TGTA----------TCAAAAACTTAAGTT-TAAGAA------------------------ATATTCT-GGATCCAAAATCT----GGAA----TTTC--CTTCCAGAACATG
gi|6410 : AGT-TAGAATTGTACAGCAAGCCTC--T--CAT-AT--TCTCAGATCCAAAATTT----GGAA----TTCT--CTTCCAGAAGACATTAAAAAAAGG--------TTC-----TCCTGCTGAAGAATTTACGATATATTACATGCACATTTAAATAGAGCAGTAACATTCCCCTTCCATCACAAGAGTGA------TCAGTGTC--T
gi|6411 : ATAT----GGAA----TGAC--ATTCCTAACCATGTT-AAAAATCC--------TTC-----ATTAGTTCAAG--------AGAT--------------------------TAA---TTCCATATCACAACAAAGATATTTTTA-TCATTGTCTTTTACAAGGCCATTATTAATAAACTGCTAGATTCTCAT
gi|6412 : ATTTTACATA-ACATTAAAATA------TAACAGTCCCCTATCATAACAAAGAT-AATTTCATCACTGTC--TTAT--AA-CAT------TAAAGT--TACATCTTCATTGCAGCATAATTGATTTTT
gi|6413 : TACACA-AAATTCAAGT-------TA------CCCTGTCACAACAAA---AAATTT---CATTGTC--TTACACAA-CAT------TAAACT--TGTATCCTTATTGCAGC-CAAATGATTCTT
gi|6414 : AAATTTG-TTATTAA----TACAAAA-CAC------TAAACT--TGTATCCTCATTGCAGC-CA