lowQualScore : 222222
lowQualScore : 22 1 1 1 88888 888888 6666666 6
lowQualScore : .. . . . ..... ...... ....... .
lowQualScore : 44 0 5 0 33333 666666 8888888 2
consensus : ATATC--GAGGGGTGAAA-GCGAAAAAGGTCTAAGTGCTTC-T---TNAT---TTATAT------GCACTTAGACCTTTTTCGCNTT
Reference ( gi|118691 ) : ATATC--GAGGGGTGAAA-GCGAAAAAGGTCTAAGTGCTTC-T---TAAT---TCCTAT------GCACTTAGACCTTTTTCGCATT
gi|118692 : ATATC--GAGGGGTTAAT-GCGAAAAAGGTCTAAGTGCATA-G---GAAT---TAAGAA------GCACTTAGACCTTTTTCGCTTT
gi|118689 : ATATC--GACGGGTGAAA-GCGAAAAAGGTCTAAGTGCTTC-T---TTAT---TTATAT------GCACTTAGATCTGTTTCGCATT
gi|118694 : ATATT--AAGGG-TGAAA-GCGAAAAAGGTCTAAGTGCTTC-T---TTAT---TTATAT------TCACTTAGACATTTTTCGCATTt
gi|118690 : ATATC--GAGGGTTAAAT-GCGAAACAGATCTAAGTGCATA-T---AAAT---AAAGAA------GCACTTAGACCTTTTTCGCTTT
gi|118695 : ATTTT--GGGGGGTGAAA-GCCAAATAAGACTAAGTGCTTC-T---TTAT---TTATAT------GTACTTAGACCTTTCTCGCATT
gi|118693 : ATACC--AAGGGGTGAAT-GCGAAAAAGGTCTAAATGCATA-T---AAAT---AAAGAA------GCACTTAGACATTTTTTGCTTT
gi|118698 : ATATC--GAGGGGTGTAA-TCGAAAAAGGT------GCTTC-T---TTAT---GTATAT------GCACTGCGACCTTTTTCGCATT
gi|118696 : ATGTC--GAGGGGTGAAA-GCGAAAAAAGTCTGAGGGCTGC-T---TTAT---TTATAT------GCA-------CTTTTTCGCTTT
gi|118697 : ATCTT--GAAGGATGAAA-GCGAAAAAGGTCTAAGTGCTTC-T---TTAT---TTATAT------A-AATTATCCCTTTTTC
gi|118700 : ATATC--GAGGGGTGAAA-GCGAAAAAGGTCTAAGTGC
gi|118699 : ATACC--GAGAGGCGAGA-ACGAAAAAGGT------GCTTC-A---TTAT---TTATAT------GCACTTAGACCCT
gi|118701 : TATC--GAGGGTTGAAA-GCAAAAAAGGTCTAAATGCTTC-T---TTAT---TTGTAT------GCATT
gi|118703 : TATCTAGAGAGGTGTAA-GCGAAAAAGGTCTAAGTGCTTC-T---T---------TA-----------TTAGACCTGTTTTGC
gi|118702 : TATC--GAGGGGTGAAT-GCGAAAAAGGTCGCAGTGCtt
gi|118704 : ATT--GCGGGGTGAAT-ATGAAAAAGGGATAA---TTTA-TA--TAA--------ATAAAGAAGCACTTAGACCTTTTTCGCTTTatatacataaagaagcacctttttcgatt
gi|118705 : TC--GAGGGGTGAAA-GCAAAAAATGTCTAAGTGCTTC-T---TTAT---TTATAT------GCATTTAGACCTTTTTCGCATT
gi|118707 : TC--GAGGGTTGAAA-GCGAAAACGGTCTTAGTGCTTC-T---TTAT---CTATAT------GCACTTAGACCTTTTTCGCATT
gi|118706 : TC--GAGGGGTGAAG-GCGAAAAAGGTCTAAGTTAGTC-T---TTAT---TTATAT------GCACTTAGACCTTTTTCGCTTT
gi|118709 : TC--TAAGGGTGAAT-GCGAAAAATGTCTAAGTGAATA-T---AAAT---AAAGAA------GCACTTAGACCTTTTTCGCTTT
gi|118708 : TC--GAGGGGTGAAT-GCGAAAAAGGTCTAAGTGCATA-T---AGAT---AAAGAA------GCACTAAGACCGTTTTCGCTTT
gi|118710 : TC--GAGCGGTGAAA-GCGAAAAAGGTCTAAGTGCTTC-T---TTAT---TTATAT------GCACTT
gi|118711 : TC--GAGGGGTGAAT-ACGAAAAAG-------TGCATA-T---AAAT---AAAGAA------GCACTTAGACCTTTTTCGCTTT
gi|118712 : TC--AAGGGGTGTAA-GCAAAACAGGTCTAA------------TAA------AGAA------GCACTTAGACCTTTTTCGC
gi|118713 : GGTAAAA-GCGAAAAAGGTCTAAGTGCATA-TAAATAAA---GACTA---------ACTTAGACCTTTTTCGCCTTtt
gi|118692 : AAA-GCGAAAAAGGTCTAAGTGCTTC-T---TAAT---TCCTAT------GCACTTAGACCTTTTTCGCATT
gi|118689 : atatcgaggggttAAATGCGAAACAGATCTAAGTGCATA-T---AAAT---AAAGAA------GCACTTAGACCTTTTTCGCTTT
gi|118705 : atatcgacgggtgAAT-GCGAAAAAGGTCTAAATGCATA-T---AAAT---AAAGAA------GCACTTAGACATTTTTTGCTTT
gi|118694 : tcgaggggtgAAT-GCGAAAAATGTCTAAGTGAATA-T---AAAT---AAAGAA------GCACTTAGACCTTTTTCGCTTT
gi|118706 : atattaagggtgAAA-GCGAAAAAGGTCTAAGTGCATA-T---AAATAAAGACTA---------ACTTAGACCTTTTTCGCCTT
gi|118690 : tcgaggggtgAAA-GCGAAAAAGGTCTAAGTGCTTC-T---TTAT---TTATAT------GCACTTAGATCTGTTTCGCATT
gi|118709 : atatcgagggttaAAA-GCGAAAAAGGTCTAAGTGCTTC-T---TTAT---TTATAT------TCACTTAGACATTTTTCGCATT
gi|118695 : tctaagggtgAAT-GCGAGAAAGGTCTAAGTACATA-T---AAAT---AAAGAA------GCACTTAGTCTTATTTGGCTTT
gi|118693 : attttggggggtgAAA-GCAAAAAATGTCTAAGTGCTTC-T---TTAT---TTATAT------GCATTTAGACCTTTTTCGCATT
gi|118708 : ataccaaggggtgAAA-GCGAAAACGGTCTTAGTGCTTC-T---TTAT---CTATAT------GCACTTAGACCTTTTTCGCATT
gi|118713 : tcgaggggtgAAG-GCGAAAAAGGTCTAAGTTAGTC-T---TTAT---TTATAT------GCACTTAGACCTTTTTCGCTTT
gi|118711 : ggtaAAA-GCGAAAAAGGTCTAAGTGCTTC-T---TTAT---TTATAT------GCA-------CTTTTTCGTATT
gi|118704 : tcgaggggtgAAA-GCGAAAAAGGTCTAAGTGCTTC-T---TTAT---TTATAT------A-AATTATCCCTTTTTCATATT
gi|118714 : attgcggggtgAAA-GCGAAAAAGGTCTAAGTGC
gi|118703 : gtgcttcattaattatatAA-GCAAAACAGGTCTAA------------TAA------AGAA------GCACTTAGACCTTTTTCGC
gi|118712 : tatctagagaggtgtaaAA-GCGAAAAAGGTCTAAGTGCTTC-T---T---------TA-----------TTAGACCTGTTTTGC
gi|118702 : tcaaggggtgtaaAA-TCGAAAAAGGT------GCTTC-T---TTAT---GTATAT------GCACTGCGACCTTTTTCGCATT
gi|118714 : tatcgaggggtgGTGCTTCAT---TAAT---TA-TAT------GCACTTAGACCTTTTTCGCTTT
gi|118710 : ------GCACTTAGACCTTTTTCGCTTT
gi|118697 : tcgagcggtg------GCACTTAGACCTTTTTCGCTTTttctttatttatatgcactt
gi|118700 : atcttgaaggatg------GCACTTAGACCTTTTTCGCTTTttctttatttatataaattatccctttttc
Alignments
lowQualScore : 33 1 3333 1
lowQualScore : .. . .... .
lowQualScore : 22 5 4444 0
consensus : ATATC--GAGGGGTGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCACTTAG----ACCTTTTTCGCATT
Reference ( family-704 ) : ATATC--GAGGGGTGAAAGCGAAAAAGGTCTAAGTGCTTCTTNATTTATATGCACTTAG----ACCTTTTTCGCNTT
gi|118689 : ATATC--GACGGGTGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCACTTAG----ATCTGTTTCGCATT
gi|118690 : AAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCACTTAG----ATCTGTTTCGCATTt
gi|118691 : atatcgagggttaATATC--GAGGGGTGAAAGCGAAAAAGGTCTAAGTGCTTCTTAATTCCTATGCACTTAG----ACCTTTTTCGCATT
gi|118692 : AAAGCGAAAAAGGTCTAAGTGCTTCTTAATTCCTATGCACTTAG----ACCTTTTTCGCATT
gi|118693 : atatcgaggggttAAAGCAAAAAATGTCTAAGTGCTTCTTTATTTATATGCATTTAG----ACCTTTTTCGCATT
gi|118694 : ataccaaggggtgATATT--AAGGG-TGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATTCACTTAG----ACATTTTTCGCATT
gi|118695 : ATTTT--GGGGGGTGAAAGCCAAATAAGACTAAGTGCTTCTTTATTTATATGTACTTAG----ACCTTTCTCGCATT
gi|118696 : ATGTC--GAGGGGTGAAAGCGAAAAAAGTCTGAGGGCTGCTTTATTTATATGCA-----------CTTTTTCGCTTT
gi|118697 : ATCTT--GAAGGATGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATA-AATTAT----CCCTTTTTC
gi|118698 : ATATC--GAGGGGTGTAATCGAAAAAGGT------GCTTCTTTATGTATATGCACTGCG----ACCTTTTTCGCATT
gi|118699 : ATACC--GAGAGGCGAGAACGAAAAAGGT------GCTTCATTATTTATATGCACTTAG----ACCCT
gi|118700 : ATATC--GAGGGGTGAAAGCGAAAAAGGTCTAAGTGC
gi|118701 : TATC--GAGGGTTGAAAGCAAAAAAGGTCTAAATGCTTCTTTATTTGTATGCATT
gi|118702 : TATC--GAGGGGTGAATGCGAAAAAGGTCGCAGTGC----------ATATACATAAAGAAGCACCTTTTTCG
gi|118702 : AATCGAAAAAGGT------GCTTCTTTATGTATATGCACTGCG----ACCTTTTTCGCATTatt
gi|118703 : tatcgaggggtgTATCTAGAGAGGTGTAAGCGAAAAAGGTCTAAGTGCTTCTTTA-----------TTAG----ACCTGTTTTGCT
gi|118704 : AAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATA-AATTAT----CCCTTTTTCATATT
gi|118705 : attgcggggtgTC--GAGGGGTGAAAGCAAAAAATGTCTAAGTGCTTCTTTATTTATATGCATTTAG----ACCTTTTTCGCATT
gi|118706 : TC--GAGGGGTGAAGGCGAAAAAGGTCTAAGTTAGTCTTTATTTATATGCACTTAG----ACCTTTTTCGCTTT
gi|118707 : TC--GAGGGTTGAAAGCGAAAACGGTCTTAGTGCTTCTTTATCTATATGCACTTAG----ACCTTTTTCGCATT
gi|118708 : AAAGCGAAAACGGTCTTAGTGCTTCTTTATCTATATGCACTTAG----ACCTTTTTCGCATT
gi|118709 : tcgaggggtgAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATTCACTTAG----ACATTTTTCGCATT
gi|118710 : tctaagggtgTC--GAGCGGTGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCACTT
gi|118711 : AAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCA-----------CTTTTTCGTATT
gi|118712 : tcgaggggtgTC--AAGGGGTGTAAGCAAAACAGGTCTAA--------TAA---AGAAGCACTTAG----ACCTTTTTCGCT
gi|118712 : AAGCGAAAAAGGTCTAAGTGCTTCTTTA-----------TTAG----ACCTGTTTTGCT
gi|118713 : tcaaggggtgtAAGGCGAAAAAGGTCTAAGTTAGTCTTTATTTATATGCACTTAG----ACCTTTTTCGCTTT
gi|118714 : ggtaGTGCTTCATTAATTATATGCACTTAG----ACCTTTTTCGCTTT
Alignments
lowQualScore : 33 3333
lowQualScore : .. ....
lowQualScore : 22 4444
consensus : ATATC--GAGGGGTGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCACTTAG----ACCTTTTTCGCATT
Reference ( family-704 ) : ATATC--GAGGGGTGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCACTTAG----ACCTTTTTCGCATT
gi|118689 : ATATC--GACGGGTGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCACTTAG----ATCTGTTTCGCATT
gi|118690 : AAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCACTTAG----ATCTGTTTCGCATTt
gi|118691 : atatcgagggttaATATC--GAGGGGTGAAAGCGAAAAAGGTCTAAGTGCTTCTTAATTCCTATGCACTTAG----ACCTTTTTCGCATT
gi|118692 : AAAGCGAAAAAGGTCTAAGTGCTTCTTAATTCCTATGCACTTAG----ACCTTTTTCGCATT
gi|118693 : atatcgaggggttAAAGCAAAAAATGTCTAAGTGCTTCTTTATTTATATGCATTTAG----ACCTTTTTCGCATT
gi|118694 : ataccaaggggtgATATT--AAGGG-TGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATTCACTTAG----ACATTTTTCGCATT
gi|118695 : ATTTT--GGGGGGTGAAAGCCAAATAAGACTAAGTGCTTCTTTATTTATATGTACTTAG----ACCTTTCTCGCATT
gi|118696 : ATGTC--GAGGGGTGAAAGCGAAAAAAGTCTGAGGGCTGCTTTATTTATATGCA-----------CTTTTTCGCTTT
gi|118697 : ATCTT--GAAGGATGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATA-AATTAT----CCCTTTTTC
gi|118698 : ATATC--GAGGGGTGTAATCGAAAAAGGT------GCTTCTTTATGTATATGCACTGCG----ACCTTTTTCGCATT
gi|118699 : ATACC--GAGAGGCGAGAACGAAAAAGGT------GCTTCATTATTTATATGCACTTAG----ACCCT
gi|118700 : ATATC--GAGGGGTGAAAGCGAAAAAGGTCTAAGTGC
gi|118701 : TATC--GAGGGTTGAAAGCAAAAAAGGTCTAAATGCTTCTTTATTTGTATGCATT
gi|118702 : TATC--GAGGGGTGAATGCGAAAAAGGTCGCAGTGC----------ATATACATAAAGAAGCACCTTTTTCG-ATT
gi|118702 : AATCGAAAAAGGT------GCTTCTTTATGTATATGCACTGCG----ACCTTTTTCGCATT
gi|118703 : tatcgaggggtgTATCTAGAGAGGTGTAAGCGAAAAAGGTCTAAGTGCTTCTTTA-----------TTAG----ACCTGTTTTGC
gi|118704 : AAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATA-AATTAT----CCCTTTTTCATATTtt
gi|118705 : attgcggggtgTC--GAGGGGTGAAAGCAAAAAATGTCTAAGTGCTTCTTTATTTATATGCATTTAG----ACCTTTTTCGCATT
gi|118706 : TC--GAGGGGTGAAGGCGAAAAAGGTCTAAGTTAGTCTTTATTTATATGCACTTAG----ACCTTTTTCGCTTT
gi|118707 : TC--GAGGGTTGAAAGCGAAAACGGTCTTAGTGCTTCTTTATCTATATGCACTTAG----ACCTTTTTCGCATT
gi|118708 : AAAGCGAAAACGGTCTTAGTGCTTCTTTATCTATATGCACTTAG----ACCTTTTTCGCATT
gi|118709 : tcgaggggtgAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATTCACTTAG----ACATTTTTCGCATT
gi|118710 : tctaagggtgTC--GAGCGGTGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCACTT
gi|118711 : AAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCA-----------CTTTTTCGTATT
gi|118712 : tcgaggggtgTC--AAGGGGTGTAAGCAAAACAGGTCTAA---------TA--AAGAAGCACTTAG----ACCTTTTTCGC
gi|118712 : AAGCGAAAAAGGTCTAAGTGCTTCTTTA-----------TTAG----ACCTGTTTTGCtt
gi|118713 : tcaaggggtgtaaAAGGCGAAAAAGGTCTAAGTTAGTCTTTATTTATATGCACTTAG----ACCTTTTTCGCTTT
gi|118714 : ggtaGTGCTTCATTAATTATATGCACTTAG----ACCTTTTTCGCTTT
blockSeqs : TA AAGC
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blockSeqCons :
originalCons : ATATC--GAGGGGTGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCACTTAG----ACCTTTTTCGCATT
finalCons : ATATC--GAGGGGTGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCACTTAG----ACCTTTTTCGCATT
Alignments
lowQualScore : 33 3333
lowQualScore : .. ....
lowQualScore : 22 4444
consensus : ATATC--GAGGGGTGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCACTTAG----ACCTTTTTCGCATT
Reference ( family-704 ) : ATATC--GAGGGGTGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCACTTAG----ACCTTTTTCGCATT
gi|118689 : ATATC--GACGGGTGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCACTTAG----ATCTGTTTCGCATT
gi|118690 : AAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCACTTAG----ATCTGTTTCGCATTt
gi|118691 : atatcgagggttaATATC--GAGGGGTGAAAGCGAAAAAGGTCTAAGTGCTTCTTAATTCCTATGCACTTAG----ACCTTTTTCGCATT
gi|118692 : AAAGCGAAAAAGGTCTAAGTGCTTCTTAATTCCTATGCACTTAG----ACCTTTTTCGCATT
gi|118693 : atatcgaggggttAAAGCAAAAAATGTCTAAGTGCTTCTTTATTTATATGCATTTAG----ACCTTTTTCGCATT
gi|118694 : ataccaaggggtgATATT--AAGGG-TGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATTCACTTAG----ACATTTTTCGCATT
gi|118695 : ATTTT--GGGGGGTGAAAGCCAAATAAGACTAAGTGCTTCTTTATTTATATGTACTTAG----ACCTTTCTCGCATT
gi|118696 : ATGTC--GAGGGGTGAAAGCGAAAAAAGTCTGAGGGCTGCTTTATTTATATGCA-----------CTTTTTCGCTTT
gi|118697 : ATCTT--GAAGGATGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATA-AATTAT----CCCTTTTTC
gi|118698 : ATATC--GAGGGGTGTAATCGAAAAAGGT------GCTTCTTTATGTATATGCACTGCG----ACCTTTTTCGCATT
gi|118699 : ATACC--GAGAGGCGAGAACGAAAAAGGT------GCTTCATTATTTATATGCACTTAG----ACCCT
gi|118700 : ATATC--GAGGGGTGAAAGCGAAAAAGGTCTAAGTGC
gi|118701 : TATC--GAGGGTTGAAAGCAAAAAAGGTCTAAATGCTTCTTTATTTGTATGCATT
gi|118702 : TATC--GAGGGGTGAATGCGAAAAAGGTCGCAGTGC----------ATATACATAAAGAAGCACCTTTTTCG-ATT
gi|118702 : AATCGAAAAAGGT------GCTTCTTTATGTATATGCACTGCG----ACCTTTTTCGCATT
gi|118703 : tatcgaggggtgTATCTAGAGAGGTGTAAGCGAAAAAGGTCTAAGTGCTTCTTTA-----------TTAG----ACCTGTTTTGC
gi|118704 : AAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATA-AATTAT----CCCTTTTTCATATTtt
gi|118705 : attgcggggtgTC--GAGGGGTGAAAGCAAAAAATGTCTAAGTGCTTCTTTATTTATATGCATTTAG----ACCTTTTTCGCATT
gi|118706 : TC--GAGGGGTGAAGGCGAAAAAGGTCTAAGTTAGTCTTTATTTATATGCACTTAG----ACCTTTTTCGCTTT
gi|118707 : TC--GAGGGTTGAAAGCGAAAACGGTCTTAGTGCTTCTTTATCTATATGCACTTAG----ACCTTTTTCGCATT
gi|118708 : AAAGCGAAAACGGTCTTAGTGCTTCTTTATCTATATGCACTTAG----ACCTTTTTCGCATT
gi|118709 : tcgaggggtgAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATTCACTTAG----ACATTTTTCGCATT
gi|118710 : tctaagggtgTC--GAGCGGTGAAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCACTT
gi|118711 : AAAGCGAAAAAGGTCTAAGTGCTTCTTTATTTATATGCA-----------CTTTTTCGTATT
gi|118712 : tcgaggggtgTC--AAGGGGTGTAAGCAAAACAGGTCTAA---------TA--AAGAAGCACTTAG----ACCTTTTTCGC
gi|118712 : AAGCGAAAAAGGTCTAAGTGCTTCTTTA-----------TTAG----ACCTGTTTTGCtt
gi|118713 : tcaaggggtgtaaAAGGCGAAAAAGGTCTAAGTTAGTCTTTATTTATATGCACTTAG----ACCTTTTTCGCTTT
gi|118714 : ggtaGTGCTTCATTAATTATATGCACTTAG----ACCTTTTTCGCTTT