lowQualScore : 11
lowQualScore : 1 4 22 44 33 3333 1 1 222 77
lowQualScore : . . .. .. .. .... . . ... ..
lowQualScore : 7 0 33 11 11 4444 6 6 999 44
consensus : TACATGGGTTTC-TTTCA--GACTAG-GTA-CAGTTG----GATCA-TTTC-GTGGACATAAAA---TGTATAGGCGAGGCCTCTTTAAA
Reference ( gi|155991 ) : TACATGGGTTTC-TTTTA--GACTAG-GTA-GAGTTG----GATCA-TTTC-GTGGACATAAAA---TGTATAGGCAAGGCCTCTTTAAA
gi|155992 : TACGTGGGTTTC-TTTCA--GACTAG-GTA-GAGTTG----GATCA-TTTC-GTGGACATAAAA---TGTATAGTCGAGGCCTCTTTAAA
gi|155993 : TACATGGGTTTC-TTTCA--GACTAG-GAA-CAATTG----GATCA-TTTC-ATGGACATAAAA---TGTATAGGCAAGGCCTCTTTAA
gi|155994 : TACATAGGTTTC-TTTCA--GATTAT-GTA-CAGTTG----GATCA-TTTC-GTGAACAC-AAA---TGTATAGGTGATGCCTCTTTAAA
gi|155996 : TACGTAGGTTTC-TATCA--GACTAT-GAA-TAGTTG----GATCA-TTTC-GCGAACA-AAAA---TGTATAGGCGAGGCCTCTTTAAA
gi|155995 : TACATAGGTTTC-TTTCA--GACTAC-ATA-CAGTTG----GATCT-TTTTTATGGACATAAAA---TGTATAGGTGAAGCCTCTTTAA
gi|155997 : TACATGGGTTTC-TTTCA--GACTAG-TTA-CAGTTG----GATCA-TTTC-GTGGATATAAAA---TGTATA
gi|156001 : TACATCGGTTTC-TTACA--GACTAG-GTG-AAGTTA----AATCA-TTTC-GTGGACATAAAA---TATATATGTGAGATCTC-TTAAA
gi|155998 : TACATGTGTTTC-TTTCA--GACCAG-TTA-CAGTTG----GATCA-TTTC-GTGGACCTAAAA---TATATAGG------CTCTTTAA
gi|155999 : TACATAGGTTTC-TTTCA--GACTAATGTACAAGTTG----GATCA-TTTC-GTGGACAATAAA---TGTATAGATGAGGCC
gi|156002 : TACATGGTTTTC-TTCCA--TACTCG-GTA-AAGTTG----CATCA-TTTT-GTTGACATAAAA---TGTATACGCGAGACCTCT
gi|156000 : TACATAAGTTTC-CTCCT--GACTAG-GTA-CAGTTA----TAGCA-TTTC-GTGGACATAAAA---TATATAGGAGATGCCTATTTAAA
gi|156003 : TAAATGGGTTTCTTTTTT--TACTA--GTA-TAGTTG----CATCA-TTTC-GTGGACATGCAA---TGTATA
gi|156004 : TACATGATTTTC-ATTCA--GATTAC-GTA-CAGTTG----GATCA-TTTC-ataggtgaag
gi|156005 : CATGGGTTTC-TTTCA--GACGAG-GTA-CAGTTG----GATCA-TTTT-GTGGACATAAAA---TGTATAGGCAATGTCTCTTTAAA
gi|156006 : CATAGGTTTC-TTTCA--GACTAG-GTA-CAGTTG----GTTCG-TATC-GTGGACATTAAA---TGTATAGGCGAGGCCTCTTTCAA
gi|156007 : ATGGGTTTC-TTTCA--GACAAG-GTA-GTGTTG----GATCA-TTTT-GTGGACATAAAA----GTATACGCAATGCCTCTTTAA
gi|156008 : ATAGGTTTC-TTTCA--GACTAT-GTA-CAGTTG----AATCA-TTTT-GTGAAAATAAAA---TGTA-----AAAGCCTCTTTAA
gi|156009 : TGGGTTTC-TTTCA--GATAAG-GTA-CAGTTG----GATCA-TTTT-GTGGACATAAAA---CCTATATG------CTCTTTAA
gi|156010 : TGGGTTTC-TTTCA--GCTTAG-GTA-CAGTTG----GATCA-TTTC-ATGGACATGAAAAATTGTAGAG
gi|156011 : GTTTT-TTTTACTGACTAA-GTA-CAGTTG----GATAA-TTTC-GCGGACATAAAA---TGTATAG
gi|156012 : TTTC-TTTCC--GAAAAT-GTA-CAGTTG----GATCA-TTTC-GTACACATAAAA---TGTATAGGTGAGACCACTTTAAAattagcgatcttt
gi|156013 : TTTC-TTTTA--AATTAC-ATA-CAGCTG----GATCA-TTTC-GTGGACATAAAC---T-TATAGACAAGACCT
gi|156014 : TTTT-TTTCA--CACGAA-ATA-CAGCTATGTTGATTAATTTT-GTAGGCATAAA----TGTATAGGTGAGGACTCTTTAGA
gi|156015 : A--GACTAT-ATA-AAGTTG----GATCA-ATTC-GTGGGCATAAAA---TGTAT
gi|156016 : ----GATTA-TT-C-GTGGACATCAAA---TGTATAGTTTAGGCCTCTTTAA
Alignments
lowQualScore : 1 22 33 1 3333 1 1 222 222 3333 2 1
lowQualScore : . .. .. . .... . . ... ... .... . .
lowQualScore : 7 22 55 6 3333 5 5 888 888 7777 6 3
consensus : TACATGGGTTTC-TTTCA--GACTAG-GTACA-GTTG----GATCA-TTTC-GTGGACATAAAA---TGT---ATAG----GCGAGGCCTCTTTAAA
Reference ( family-695 ) : TACATGGGTTTC-TTTCA--GACTAG-GTACA-GTTG----GATCA-TTTC-GTGGACATAAAA---TGT---ATAG----GCGAGGCCTCTTTAAA
gi|155991 : TACATGGGTTTC-TTTTA--GACTAG-GTAGA-GTTG----GATCA-TTTC-GTGGACATAAAA---TGT---ATAG----GCAAGGCCTCTTTAAA
gi|155992 : TACGTGGGTTTC-TTTCA--GACTAG-GTAGA-GTTG----GATCA-TTTC-GTGGACATAAAA---TGT---ATAG----TCGAGGCCTCTTTAAA
gi|155993 : TACATGGGTTTC-TTTCA--GACTAG-GAACA-ATTG----GATCA-TTTC-ATGGACATAAAA---TGT---ATAG----GCAAGGCCTCTTTAA
gi|155994 : TACATAGGTTTC-TTTCA--GATTAT-GTACA-GTTG----GATCA-TTTC-GTGAACAC-AAA---TGT---ATAG----GTGATGCCTCTTTAAA
gi|155995 : TACATAGGTTTC-TTTCA--GACTAC-ATACA-GTTG----GATCT-TTTTTATGGACATAAAA---TGT---ATAG----GTGAAGCCTCTTTAA
gi|155996 : TACGTAGGTTTC-TATCA--GACTAT-GAATA-GTTG----GATCA-TTTC-GCGAACA-AAAA---TGT---ATAG----GCGAGGCCTCTTTAAA
gi|155997 : TACATGGGTTTC-TTTCA--GACTAG-TTACA-GTTG----GATCA-TTTC-GTGGATATAAAA---TGT---ATA
gi|155998 : TACATGTGTTTC-TTTCA--GACCAG-TTACA-GTTG----GATCA-TTTC-GTGGACCTAAAA---TAT---ATAG----G------CTCTTTAA
gi|155999 : TACATAGGTTTC-TTTCA--GACTAATGTACAAGTTG----GATCA-TTTC-GTGGACAATAAA---TGT---ATAG----ATGAGGCC
gi|156000 : TACATAAGTTTC-CTCCT--GACTAG-GTACA-GTTA----TAGCA-TTTC-GTGGACATAAAA---TAT---ATAG----GAGATGCCTATTTAAA
gi|156001 : TACATCGGTTTC-TTACA--GACTAG-GTGAA-GTTA----AATCA-TTTC-GTGGACATAAAA---TAT---ATAT----GTGAGATCTC-TTAAA
gi|156002 : TACATGGTTTTC-TTCCA--TACTCG-GTAAA-GTTG----CATCA-TTTT-GTTGACATAAAA---TGT---ATAC----GCGAGACCTCT
gi|156003 : TAAATGGGTTTCTTTTTT--TACTA--GTATA-GTTG----CATCA-TTTC-GTGGACATGCAA---TGTATAATAG----GTGAA
gi|156004 : TACATGATTTTC-ATTCA--GATTAC-GTACA-GTTG----GATCA-TTTC-
gi|156005 : CATGGGTTTC-TTTCA--GACGAG-GTACA-GTTG----GATCA-TTTT-GTGGACATAAAA---TGT---ATAG----GCAATGTCTCTTTAAA
gi|156006 : CATAGGTTTC-TTTCA--GACTAG-GTACA-GTTG----GTTCG-TATC-GTGGACATTAAA---TGT---ATAG----GCGAGGCCTCTTTCAA
gi|156007 : ATGGGTTTC-TTTCA--GACAAG-GTAGT-GTTG----GATCA-TTTT-GTGGACATAAAA----GT---ATAC----GCAATGCCTCTTTAA
gi|156008 : ATAGGTTTC-TTTCA--GACTAT-GTACA-GTTG----AATCA-TTTT-GTGAAAATAAAA---TGT---A---------AAAGCCTCTTTAA
gi|156009 : TGGGTTTC-TTTCA--GATAAG-GTACA-GTTG----GATCA-TTTT-GTGGACATAAAA---CCT---ATAT----G------CTCTTTAA
gi|156010 : TGGGTTTC-TTTCA--GCTTAG-GTACA-GTTG----GATCA-TTTC-ATGGACATGAAAAATTGT---AGAG----
gi|156011 : GTTTT-TTTTACTGACTAA-GTACA-GTTG----GATAA-TTTC-GCGGACATAAAA---TGT---ATAGATTAGCGA----TCTTT
gi|156012 : TTTC-TTTCC--GAAAAT-GTACA-GTTG----GATCA-TTTC-GTACACATAAAA---TGT---ATAG----GTGAGACCACTTTAAA
gi|156013 : TTTC-TTTTA--AATTAC-ATACA-GCTG----GATCA-TTTC-GTGGACATAAAC---T-T---ATAG----ACAAGACCT
gi|156014 : TTTT-TTTCA--CACGAA-ATACA-GCTATGTTGATTAATTTT-GTAGGCATAAA----TGT---ATAG----GTGAGGACTCTTTAGA
gi|156015 : A--GACTAT-ATAAA-GTTG----GATCA-ATTC-GTGGGCATAAAA---TGT---AT
gi|156016 : ----GATTA-TT-C-GTGGACATCAAA---TGT---ATAG----TTTAGGCCTCTTTAA
Alignments
lowQualScore : 1 22 33 1 3333 1 1 222 222 3333 2 1
lowQualScore : . .. .. . .... . . ... ... .... . .
lowQualScore : 7 22 55 6 3333 5 5 888 888 7777 6 3
consensus : TACATGGGTTTC-TTTCA--GACTAG-GTACA-GTTG----GATCA-TTTC-GTGGACATAAAA---TGT---ATAG----GCGAGGCCTCTTTAAA
Reference ( family-695 ) : TACATGGGTTTC-TTTCA--GACTAG-GTACA-GTTG----GATCA-TTTC-GTGGACATAAAA---TGT---ATAG----GCGAGGCCTCTTTAAA
gi|155991 : TACATGGGTTTC-TTTTA--GACTAG-GTAGA-GTTG----GATCA-TTTC-GTGGACATAAAA---TGT---ATAG----GCAAGGCCTCTTTAAA
gi|155992 : TACGTGGGTTTC-TTTCA--GACTAG-GTAGA-GTTG----GATCA-TTTC-GTGGACATAAAA---TGT---ATAG----TCGAGGCCTCTTTAAA
gi|155993 : TACATGGGTTTC-TTTCA--GACTAG-GAACA-ATTG----GATCA-TTTC-ATGGACATAAAA---TGT---ATAG----GCAAGGCCTCTTTAA
gi|155994 : TACATAGGTTTC-TTTCA--GATTAT-GTACA-GTTG----GATCA-TTTC-GTGAACAC-AAA---TGT---ATAG----GTGATGCCTCTTTAAA
gi|155995 : TACATAGGTTTC-TTTCA--GACTAC-ATACA-GTTG----GATCT-TTTTTATGGACATAAAA---TGT---ATAG----GTGAAGCCTCTTTAA
gi|155996 : TACGTAGGTTTC-TATCA--GACTAT-GAATA-GTTG----GATCA-TTTC-GCGAACA-AAAA---TGT---ATAG----GCGAGGCCTCTTTAAA
gi|155997 : TACATGGGTTTC-TTTCA--GACTAG-TTACA-GTTG----GATCA-TTTC-GTGGATATAAAA---TGT---ATA
gi|155998 : TACATGTGTTTC-TTTCA--GACCAG-TTACA-GTTG----GATCA-TTTC-GTGGACCTAAAA---TAT---ATAG----G------CTCTTTAA
gi|155999 : TACATAGGTTTC-TTTCA--GACTAATGTACAAGTTG----GATCA-TTTC-GTGGACAATAAA---TGT---ATAG----ATGAGGCC
gi|156000 : TACATAAGTTTC-CTCCT--GACTAG-GTACA-GTTA----TAGCA-TTTC-GTGGACATAAAA---TAT---ATAG----GAGATGCCTATTTAAA
gi|156001 : TACATCGGTTTC-TTACA--GACTAG-GTGAA-GTTA----AATCA-TTTC-GTGGACATAAAA---TAT---ATAT----GTGAGATCTC-TTAAA
gi|156002 : TACATGGTTTTC-TTCCA--TACTCG-GTAAA-GTTG----CATCA-TTTT-GTTGACATAAAA---TGT---ATAC----GCGAGACCTCT
gi|156003 : TAAATGGGTTTCTTTTTT--TACTA--GTATA-GTTG----CATCA-TTTC-GTGGACATGCAA---TGTATAATAG----GTGAA
gi|156004 : TACATGATTTTC-ATTCA--GATTAC-GTACA-GTTG----GATCA-TTTC-
gi|156005 : CATGGGTTTC-TTTCA--GACGAG-GTACA-GTTG----GATCA-TTTT-GTGGACATAAAA---TGT---ATAG----GCAATGTCTCTTTAAA
gi|156006 : CATAGGTTTC-TTTCA--GACTAG-GTACA-GTTG----GTTCG-TATC-GTGGACATTAAA---TGT---ATAG----GCGAGGCCTCTTTCAA
gi|156007 : ATGGGTTTC-TTTCA--GACAAG-GTAGT-GTTG----GATCA-TTTT-GTGGACATAAAA----GT---ATAC----GCAATGCCTCTTTAA
gi|156008 : ATAGGTTTC-TTTCA--GACTAT-GTACA-GTTG----AATCA-TTTT-GTGAAAATAAAA---TGT---A---------AAAGCCTCTTTAA
gi|156009 : TGGGTTTC-TTTCA--GATAAG-GTACA-GTTG----GATCA-TTTT-GTGGACATAAAA---CCT---ATAT----G------CTCTTTAA
gi|156010 : TGGGTTTC-TTTCA--GCTTAG-GTACA-GTTG----GATCA-TTTC-ATGGACATGAAAAATTGT---AGAG----
gi|156011 : GTTTT-TTTTACTGACTAA-GTACA-GTTG----GATAA-TTTC-GCGGACATAAAA---TGT---ATAGATTAGCGA----TCTTT
gi|156012 : TTTC-TTTCC--GAAAAT-GTACA-GTTG----GATCA-TTTC-GTACACATAAAA---TGT---ATAG----GTGAGACCACTTTAAA
gi|156013 : TTTC-TTTTA--AATTAC-ATACA-GCTG----GATCA-TTTC-GTGGACATAAAC---T-T---ATAG----ACAAGACCT
gi|156014 : TTTT-TTTCA--CACGAA-ATACA-GCTATGTTGATTAATTTT-GTAGGCATAAA----TGT---ATAG----GTGAGGACTCTTTAGA
gi|156015 : A--GACTAT-ATAAA-GTTG----GATCA-ATTC-GTGGGCATAAAA---TGT---AT
gi|156016 : ----GATTA-TT-C-GTGGACATCAAA---TGT---ATAG----TTTAGGCCTCTTTAA
blockSeqs : T CT AT A TGTT A T AAT ATA ATTA C G
blockSeqs : . . G . . . . . . . C G
blockSeqs : . . G . . . . . . . T T
blockSeqs : . . T . . . . . . . T A
blockSeqs : . . C . . . . . . . C G
blockSeqs : . . T . . . . . . . T G
blockSeqs : . . G . . . . . . . A T
blockSeqs : . . G . . . . . . . T G
blockSeqs : . . G . . . . . . . C G
blockSeqs : . . G . . . . . . . T A
blockSeqs : . . G . . . . . . . C T
blockSeqs : . . C . . . . . . . C G
blockSeqs : . . G . . . . . . . C T
blockSeqs : . . G . . . . . . . C A
blockSeqs : . . G . . . . . . . T G
blockSeqs : . . T . . . . . . . C G
blockSeqs : . . G . . . . . . . T G
blockSeqs : . . G . . . . . . . T G
blockSeqs : . . A . . . . . . . . .
blockSeqs : . . T . . . . . . . . .
blockSeqs : . . C . . . . . . . . .
blockSeqs : . . A . . . . . . .
blockSeqs : . . T . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : TACATGGGTTTC-TTTCA--GACTAG-GTACA-GTTG----GATCA-TTTC-GTGGACATAAAA---TGT---ATAG----GCGAGGCCTCTTTAAA
finalCons : TACATGGGTTTC-TTTCA--GACTAG-GTACA-GTTG----GATCA-TTTC-GTGGACATAAAA---TGT---ATAG----GCGAGGCCTCTTTAAA
Alignments
lowQualScore : 1 22 33 1 3333 1 1 222 222 3333 2 1
lowQualScore : . .. .. . .... . . ... ... .... . .
lowQualScore : 7 22 55 6 3333 5 5 888 888 7777 6 3
consensus : TACATGGGTTTC-TTTCA--GACTAG-GTACA-GTTG----GATCA-TTTC-GTGGACATAAAA---TGT---ATAG----GCGAGGCCTCTTTAAA
Reference ( family-695 ) : TACATGGGTTTC-TTTCA--GACTAG-GTACA-GTTG----GATCA-TTTC-GTGGACATAAAA---TGT---ATAG----GCGAGGCCTCTTTAAA
gi|155991 : TACATGGGTTTC-TTTTA--GACTAG-GTAGA-GTTG----GATCA-TTTC-GTGGACATAAAA---TGT---ATAG----GCAAGGCCTCTTTAAA
gi|155992 : TACGTGGGTTTC-TTTCA--GACTAG-GTAGA-GTTG----GATCA-TTTC-GTGGACATAAAA---TGT---ATAG----TCGAGGCCTCTTTAAA
gi|155993 : TACATGGGTTTC-TTTCA--GACTAG-GAACA-ATTG----GATCA-TTTC-ATGGACATAAAA---TGT---ATAG----GCAAGGCCTCTTTAA
gi|155994 : TACATAGGTTTC-TTTCA--GATTAT-GTACA-GTTG----GATCA-TTTC-GTGAACAC-AAA---TGT---ATAG----GTGATGCCTCTTTAAA
gi|155995 : TACATAGGTTTC-TTTCA--GACTAC-ATACA-GTTG----GATCT-TTTTTATGGACATAAAA---TGT---ATAG----GTGAAGCCTCTTTAA
gi|155996 : TACGTAGGTTTC-TATCA--GACTAT-GAATA-GTTG----GATCA-TTTC-GCGAACA-AAAA---TGT---ATAG----GCGAGGCCTCTTTAAA
gi|155997 : TACATGGGTTTC-TTTCA--GACTAG-TTACA-GTTG----GATCA-TTTC-GTGGATATAAAA---TGT---ATA
gi|155998 : TACATGTGTTTC-TTTCA--GACCAG-TTACA-GTTG----GATCA-TTTC-GTGGACCTAAAA---TAT---ATAG----G------CTCTTTAA
gi|155999 : TACATAGGTTTC-TTTCA--GACTAATGTACAAGTTG----GATCA-TTTC-GTGGACAATAAA---TGT---ATAG----ATGAGGCC
gi|156000 : TACATAAGTTTC-CTCCT--GACTAG-GTACA-GTTA----TAGCA-TTTC-GTGGACATAAAA---TAT---ATAG----GAGATGCCTATTTAAA
gi|156001 : TACATCGGTTTC-TTACA--GACTAG-GTGAA-GTTA----AATCA-TTTC-GTGGACATAAAA---TAT---ATAT----GTGAGATCTC-TTAAA
gi|156002 : TACATGGTTTTC-TTCCA--TACTCG-GTAAA-GTTG----CATCA-TTTT-GTTGACATAAAA---TGT---ATAC----GCGAGACCTCT
gi|156003 : TAAATGGGTTTCTTTTTT--TACTA--GTATA-GTTG----CATCA-TTTC-GTGGACATGCAA---TGTATAATAG----GTGAA
gi|156004 : TACATGATTTTC-ATTCA--GATTAC-GTACA-GTTG----GATCA-TTTC-
gi|156005 : CATGGGTTTC-TTTCA--GACGAG-GTACA-GTTG----GATCA-TTTT-GTGGACATAAAA---TGT---ATAG----GCAATGTCTCTTTAAA
gi|156006 : CATAGGTTTC-TTTCA--GACTAG-GTACA-GTTG----GTTCG-TATC-GTGGACATTAAA---TGT---ATAG----GCGAGGCCTCTTTCAA
gi|156007 : ATGGGTTTC-TTTCA--GACAAG-GTAGT-GTTG----GATCA-TTTT-GTGGACATAAAA----GT---ATAC----GCAATGCCTCTTTAA
gi|156008 : ATAGGTTTC-TTTCA--GACTAT-GTACA-GTTG----AATCA-TTTT-GTGAAAATAAAA---TGT---A---------AAAGCCTCTTTAA
gi|156009 : TGGGTTTC-TTTCA--GATAAG-GTACA-GTTG----GATCA-TTTT-GTGGACATAAAA---CCT---ATAT----G------CTCTTTAA
gi|156010 : TGGGTTTC-TTTCA--GCTTAG-GTACA-GTTG----GATCA-TTTC-ATGGACATGAAAAATTGT---AGAG----
gi|156011 : GTTTT-TTTTACTGACTAA-GTACA-GTTG----GATAA-TTTC-GCGGACATAAAA---TGT---ATAGATTAGCGA----TCTTT
gi|156012 : TTTC-TTTCC--GAAAAT-GTACA-GTTG----GATCA-TTTC-GTACACATAAAA---TGT---ATAG----GTGAGACCACTTTAAA
gi|156013 : TTTC-TTTTA--AATTAC-ATACA-GCTG----GATCA-TTTC-GTGGACATAAAC---T-T---ATAG----ACAAGACCT
gi|156014 : TTTT-TTTCA--CACGAA-ATACA-GCTATGTTGATTAATTTT-GTAGGCATAAA----TGT---ATAG----GTGAGGACTCTTTAGA
gi|156015 : A--GACTAT-ATAAA-GTTG----GATCA-ATTC-GTGGGCATAAAA---TGT---AT
gi|156016 : ----GATTA-TT-C-GTGGACATCAAA---TGT---ATAG----TTTAGGCCTCTTTAA