lowQualScore : 222222222 66666 1111111 1 11
lowQualScore : 6 4 2 88888888 999999999 2 66666 2 5 777 6 2 7777777 33 3 33 0 88 2 33
lowQualScore : . . . ........ ......... . ..... . . ... . . ....... .. . .. . .. . ..
lowQualScore : 4 1 5 55555555 111111111 2 33333 5 0 444 6 2 0000000 11 6 11 6 99 5 44
consensus : ACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTGCGTAAG--------AACATGAAAAAC--CTCG--TGCAATTGTTTGGGGATGTTT-ATTCAATACAC-----CT-GCGAATTCTCA--ATTTAATCCGATTATAATTGAC-CAAG------A--TATTCATTGTTGAATTATACACAC--TCATGTACAGTGGCTATATTTCAATGTCA-TAATGAAACCTGA-A--GAAAAATTAGAAAT
Reference ( gi|112723 ) : ACGAGGGGCGTTCAATAAATTCTGTCACTAATGGCCTTCCATAGAAACAATGTTGCATAAG--------AACATGAAAAAC--CTTG--TGCAATTGTTTGGGGATGTTT-ATTCAATACACAGGT-CT-GCAAATTCTCA--GTTTAACCCGATTATAATTGAC-CAAT------A--TATTCATTGTTGAATTATACAGAC--TCATGTACAGTGGCTATATTTCAATGTCT-TAATGAAACCTGA-A--GAAAAATTAGAAAT
gi|112703 : ACAAGGGGCATTCAATAAATTCTGTCACTAATGGCATTCTGTTGAAACAATGTTGCGTAAG--------AACACTAAAAAC---TTG--TACAATTGTTTGGGGATGATT-ATTCAA----CAGAC-CT-GCGAATTCTCA--ATTTAATCCGATTATAACTGAC-CACG------A--TATTCATTGTTGAATTATACACAC--TCATGTACAGTGGCTATATTTCAATGTCA-TAATGAAACCTGACA--AAAAAATTAGAAAT
gi|112704 : tACGAGGGGCATTCAATAAATTCTGTCGTTAATGATTTTCTGTAGGAACAATGTTGCGTAAG--------TACATGAAAAAC---TTG--TGCAATTGTTTGGGGATATTT-ATTCAATAAAC------TAGCGAATTCTTA--AGTTAATCTAATTATAATTGAC-CAAG------A--TATTCATTGTTGAATTATACACAC--TCGTGTACAGTGGCTATTTTTCAATGTCA-TAATGAAACCT-A-A--GAAAAATTAGAAAT
gi|112705 : tACGAGGGGCATTCAATAAATTCTGTCACTAGTGGCCTTCCGTAGAAACAATGTTTCGTAAG--------AACATGAAAAACTACTCG--TGCAATTGT-------------ATTCAATACAC-----CT-GCGAATTCTCA--ATTTAATCCGATTATAATTGAC-CAAG------A--TATTCATTGTTGAATTATAC--AC--TCATGTACAGTGGCTTTATTTCAATGTCA-TAGCGAAAACTGA-A--
gi|112708 : tACGAGGGTCATTCAATAAATTATGTCTCTAGTGGTCTTCCGTAGAAACAAGGTTGTGTAAA--------AACATGAACAAC---TTG--TGCAGTTATATGGGAATGTTT-ATTCAGTACAC-----CT-GCAAATTCTCA--ACTTAATAAAATTACAATTGAC-CAAG------A--TATTCATTGTTGAATTACACACAT--TCATGTACAGTGGTTATATTTCAATGTCA-TAATAAAACCAGA-A--AAAAA---AGAAAT
gi|112710 : tACGAGGGAAATTCAATAAATTCTGTCACTACTGGTCATCCGTAGAAACAATGATGTACAAG--------AACATGACTAACG-C--G--TGGAATCGTTTGGGGATATTTTAATCAATACAC-----CT-GTTGATTCTCA--ATTTCATCCGATTATAATTGAT-CAAG------A--TATTTATTGTTGAATTATACACAC--TCATTTATAGTGGCTATATTCAAATGCCA-TAATAAAACCGGA-A--GAAAAATTAGAAGT
gi|112716 : tACGACGGGCATTCAATAAATTTTGTCACTAATGGCCTTCCGTAGAAACAATGTTACATAAG--------AACATGAAAAA---CTCG--TGTAATTGTTTGGGGTTGTTT-ATACAATACACA-----T-GTGAATTCTCA--A-TCAA----ATTTTAATTTAC-AAAT------A--TATTCATTGTCGAATTATACACAC--TCATGTACAGTGGCTTAATTTCAAGGTCA-TA--GAAA
gi|112713 : tACGAGGGGCATTCAATAA-TTCTGCCATTTATAGCCATCCGTAGAAACAATGTTACGTAAGAACATGGAAACATGGAAAAC--C-TG--TTCAATTGTTT-AGGATGTTT-ATTCAATAGACCTGCACT-GCGAATTCTAT--ATTTAATCATATTATAATTGACTCAAG------A--TATTTATTGTTGAATTATTCACAC--TCATGTACAGT-GCTATACTTAAATGCCA-TAATGAAAAATGA-AATGAAAAATTAGAAAT
gi|112714 : tACAATGGGTATTCAATAAATTCTGTCACTAATTGCCTTCCGTAGAACCAATGTTGTGTAAG--------AACATGAAAAA---CTGG--TGTAAATGTTTGGGGATGGTA-CTTTAATACA----T-CT-GCGAATT-TCA--ATTTAGTCTGATTATAATTGAC-CAAG------G--TATTCATTGTTGAATTATACACACATTCATATACA-TA--TATATTTTAATGTCA-TAATGTAACCTAA-C--AATAAAATACAAAT
gi|112719 : tACGAGAGGCATTCAATAATTTGTGTCACTAATGACCTTCGATAGAAACAATGTTGCGCAAG--------AACATGAAAAA---ATCG--TGCAATTGTTTGGGGATGTTT-GTTCAGAACAC---------------CTCACTATTTAATCCAAT------------AAG------A--TATGCGTTGTTGAAT----------------TGCAGTTGCTATATTTCAATGTCA-TAATGAAACCTG
gi|112717 : tACGAGGGGTATTCAATAAATTCTGTCACTTATGACCTTCCGTGGAAACAATGTTGTGCAAG--------AAAATGAAAAA---CTCG--TGCAATTGTTTGGGGATGTTT-ATTCAATACtaa
gi|112724 : tACAAGGGACATTCAATAAATCCTGTCACTGATGGCCTTTCATAGAAACATCTTTGGATAAC--------AGCGTGGACAAC--TCT---TGAAATTGATTGAGGATATAT--TTCCATATCCAA------GCGA------A--GTTTAATTCGATGATAAATAAC-CGTG------A--TATCCAGTGTTGAAATATACGTAC--TC-------------ATATTTCAATGTTG-AAGTAAACCCTAA-A--GACAAATTACAAATttctgcgttgttgaattatacacactcatgtacagtggctatttgtcataatgaaacctgaaaaaaaa
gi|112715 : ACGAGGGGCATTCAATATATTCTGTCAC---TGGTCTTC
gi|112721 : tACGAGGGACATTCAATAAATTCTGTCACT
gi|112712 : tACGAGGGGCATTCAATAAATTCTGTTACT
gi|112718 : tACGAGGGGCATTCAGTATATTCTGTCAC---TGGTCTTC
gi|112722 : tACGAGGGGCATTCAATATACTCTGTCACTA---GTCTTC
gi|112709 : tACGAGGGGCATTCAATATATTCTGTCACTggt
gi|112720 : tACGAGGGGCATTTAATATATTCTGTCAC---TGGTCTTC
gi|112707 : tCGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCTGTAGAAAAAATGTTGCATAAG--------AACATGAAAAA---CTTG--TGCAATTGTTTGGGGATGTTT-ATTCAATACAC-----CT-GCAAATTCTGA--ATTCAACCCAATTATAATTGAA-CAAG------A--TATTCATTGTTGAATTACACACAC--TCATGT-CA---------------------TAATGAAACCTGG-A--GAAAAATAAGAAAT
gi|112711 : tgGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATATTGCGTAAG--------AACATGAAAAA---CTCG--TGC-ATTGTTTGGGGATATTT-ATTCAATACAC-----CT-TCAAATTCTCA--ATTTATCCCGAATATAATTGA---AATATGAAGA--TATTCATTGTTGAATGTTACACAC--TCATG-------------TTTCAATGTCA-TAATGGAACCTGA-A--AAAAA--TAGAAAT
gi|112725 : taaGAGGGGCTATCAATAAATTCTGCAACTAATGTCCATCCGTAGAAACAATGTTGCGTAAG--------AACATAAAAAACG-CC----TGCAATTGTTTGGTGATGTTT-ATTAAATACA----T-CT-GCGAATTCTCA--G--------------------------------A--TATTCATTGTTGCTTTATACACAC--TCATATACAGTGGCTATATTTCAATATCA-AAATGAAACATGA-A--GAAAAAAGAGAAAT
gi|112706 : GGGGCATTCATTAAATTATGTCACTAATGGCCTTCCGTAGACACGATGTTGCGTAAG--------AACATAAAAA----CAGG--TGCAATGAATTTGGAATGTTT--TTCAATACAC-----CT-GCGAATTCTCA--ATTTAATCCGATTATAATTGAC-CAAG------A--TATGCATTGTTGAATTATACACAC--TCATGTACAGTGGATATCTTTCAATGCAA-TAATGAAATCTGA-A--GAAAAATT
gi|112726 : tactgTTCAATAAGTTCTATCACTAATGGCCTTCCGTAGAAACAATGTGGCGTAAG--------AACATGAAAAA-----TGCATGCAATTATTTAGGGATGTTT-ATTCAATACACA-----T-GCGACTTTTCA--ATTAAATCCGATTATTATT-------C------A--TATTCATTGTTCAATTATACACAC--TCATGTAGAGTGGCTATATTTCAATGTTA-TAATGAAACCTGA-A--GAAACATTAGAAAT
gi|112727 : aAAATAATGTTGCGTAAA--------AACATGAGAAAC--TCT---TGCAATTGTTTGGGGATATTT-ATCAAATACA
gi|112728 : GGATACTT-ATT-AACAAACG----------AATTCTCA--ATTTAATCCTATTATAATTGAC-AAAG------A--TATTCATTGTTCAATAATGCACAC--TCATGCATAGTTGCTTTATTTCAAATTCA-TAATGAAACCTGA-A--GGAAAAGTATAAAT
gi|112729 : TCTAG--ATTTGATCTGATAACAGCTAAC-CAAA------T--TGTTCATTGTTGAATTATATGGAC--TAATATATAGTGGTTA-ATTTTACAGTCGAGAATAAAA-CTGA-A--ATAAGAT
gi|112717 : -CAAT------ACTTCTGCGTTGTTGAATTATACACAC--TCATGTACAGTGGCTAT-T-----TGTCA-TAATGAAACCTGA-A--AAAAAA
Alignments
lowQualScore : 222222 11111
lowQualScore : 88888888 000000 2 00000 4444 2 22 0 2 2 33
lowQualScore : ........ ...... . ..... .... . .. . . . ..
lowQualScore : 11111111 222222 1 33333 7777 2 99 1 1 4 22
consensus : ACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTGCGTAAG--------AACATGAAAAAC--CTCGTGCAATTGTTTGGGGATG-TTTATTCAATACAC-----CTGCGAATTCTCAATTTAATCCGATTATAATTG----AC-CAAGATATTCATTGTTGAATTATACACAC--TCATGTACAGTGGCTATATTTCAATGTC-ATAATGAAACCTGA-A--GAAAAATTAGAAAT
Reference ( family-687 ) : ACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTGCGTAAG--------AACATGAAAAAC--CTCGTGCAATTGTTTGGGGATG-TTTATTCAATACAC-----CTGCGAATTCTCAATTTAATCCGATTATAATTG----AC-CAAGATATTCATTGTTGAATTATACACAC--TCATGTACAGTGGCTATATTTCAATGTC-ATAATGAAACCTGA-A--GAAAAATTAGAAAT
gi|112703 : ACAAGGGGCATTCAATAAATTCTGTCACTAATGGCATTCTGTTGAAACAATGTTGCGTAAG--------AACACTAAAAAC--TT-GTACAATTGTTTGGGGATG-ATTATTCAACAGAC-----CTGCGAATTCTCAATTTAATCCGATTATAACTG----AC-CACGATATTCATTGTTGAATTATACACAC--TCATGTACAGTGGCTATATTTCAATGTC-ATAATGAAACCTGACA--AAAAAATTAGAAAT
gi|112704 : tACGAGGGGCATTCAATAAATTCTGTCGTTAATGATTTTCTGTAGGAACAATGTTGCGTAAG--------TACATGAAAAAC--TT-GTGCAATTGTTTGGGGATA-TTTATTCAATAAAC-----TAGCGAATTCTTAAGTTAATCTAATTATAATTG----AC-CAAGATATTCATTGTTGAATTATACACAC--TCGTGTACAGTGGCTATTTTTCAATGTC-ATAATGAAACCT-A-A--GAAAAATTAGAAAT
gi|112705 : tACGAGGGGCATTCAATAAATTCTGTCACTAGTGGCCTTCCGTAGAAACAATGTTTCGTAAG--------AACATGAAAAACTACTCGTGCAATTGT-------------ATTCAATACAC-----CTGCGAATTCTCAATTTAATCCGATTATAATTG----AC-CAAGATATTCATTGTTGAATTAT--ACAC--TCATGTACAGTGGCTTTATTTCAATGTC-ATAGCGAAAACTGA-A--
gi|112706 : tGGGGCATTCATTAAATTATGTCACTAATGGCCTTCCGTAGACACGATGTTGCGTAAG--------AACATAAAAA----CAGGTGCAATGAATTTGGAATG-TTT-TTCAATACAC-----CTGCGAATTCTCAATTTAATCCGATTATAATTG----AC-CAAGATATGCATTGTTGAATTATACACAC--TCATGTACAGTGGATATCTTTCAATGCA-ATAATGAAATCTGA-A--GAAAAATT
gi|112707 : tactgCGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCTGTAGAAAAAATGTTGCATAAG--------AACATGAAAAAC--TT-GTGCAATTGTTTGGGGATG-TTTATTCAATACAC-----CTGCAAATTCTGAATTCAACCCAATTATAATTG----AA-CAAGATATTCATTGTTGAATTACACACAC--TC---------------------ATGTC-ATAATGAAACCTGG-A--GAAAAATAAGAAAT
gi|112708 : tgACGAGGGTCATTCAATAAATTATGTCTCTAGTGGTCTTCCGTAGAAACAAGGTTGTGTAAA--------AACATGAACAAC--TT-GTGCAGTTATATGGGAATG-TTTATTCAGTACAC-----CTGCAAATTCTCAACTTAATAAAATTACAATTG----AC-CAAGATATTCATTGTTGAATTACACACAT--TCATGTACAGTGGTTATATTTCAATGTC-ATAATAAAACCAGA-A--AAAAA---AGAAAT
gi|112709 : tACGAGGGGCATTCAATATATTCTGTCACT
gi|112710 : tACGAGGGAAATTCAATAAATTCTGTCACTACTGGTCATCCGTAGAAACAATGATGTACAAG--------AACATGACTAA---CGCGTGGAATCGTTTGGGGATATTTTAATCAATACAC-----CTGTTGATTCTCAATTTCATCCGATTATAATTG----AT-CAAGATATTTATTGTTGAATTATACACAC--TCATTTATAGTGGCTATATTCAAATGCC-ATAATAAAACCGGA-A--GAAAAATTAGAAGT
gi|112711 : tGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATATTGCGTAAG--------AACATGAAAAA---CTCGTGC-ATTGTTTGGGGATA-TTTATTCAATACAC-----CTTCAAATTCTCAATTTATCCCGAATATAATTGAAATAT-GAAGATATTCATTGTTGAATGTTACACAC--TCATG-------------TTTCAATGTC-ATAATGGAACCTGA-A--AAAAA--TAGAAAT
gi|112712 : taaACGAGGGGCATTCAATAAATTCTGTTACT
gi|112713 : tACGAGGGGCATTCAATAA-TTCTGCCATTTATAGCCATCCGTAGAAACAATGTTACGTAAGAACATGGAAACATGGAAAAC--CT-GTTCAATTGTTT-AGGATG-TTTATTCAATAGACCTGCACTGCGAATTCTATATTTAATCATATTATAATTG----ACTCAAGATATTTATTGTTGAATTATTCACAC--TCATGTACAGT-GCTATACTTAAATGCC-ATAATGAAAAATGA-AATGAAAAATTAGAAAT
gi|112714 : tACAATGGGTATTCAATAAATTCTGTCACTAATTGCCTTCCGTAGAACCAATGTTGTGTAAG--------AACATGAAAAA---CTGGTGTAAATGTTTGGGGATG-GTACTTTAATACAT-----CTGCGAATT-TCAATTTAGTCTGATTATAATTG----AC-CAAGGTATTCATTGTTGAATTATACACACATTCATATACA-TA--TATATTTTAATGTC-ATAATGTAACCTAA-C--AATAAAATACAAAT
gi|112715 : tACGAGGGGCATTCAATATATTCTGTCAC---TGGTCTTC
gi|112716 : tACGACGGGCATTCAATAAATTTTGTCACTAATGGCCTTCCGTAGAAACAATGTTACATAAG--------AACATGAAAAA---CTCGTGTAATTGTTTGGGGTTG-TTTATACAATACAC-----ATGTGAATTCTCAA-TCAA----ATTTTAATTT----AC-AAATATATTCATTGTCGAATTATACACAC--TCATGTACAGTGGCTTAATTTCAAGGTC-ATA--GAAA
gi|112717 : tACGAGGGGTATTCAATAAATTCTGTCACTTATGACCTTCCGTGGAAACAATGTTGTGCAAG--------AAAATGAAAAA---CTCGTGCAATTGTTTGGGGATG-TTTATTCAATACTT-----CTGCG
gi|112717 : tCGTTGTTGAATTATACACAC--TCATGTACAGTGGCTAT-T-----TGTC-ATAATGAAACCTGA-A--AAAAAAttgttgaattatacacactcatgtacagtggctatttgtcataatgaaacctgaaaaaaaa
gi|112718 : tacgaggggtattcaataaattctgtcacttatgaccttccgtggaaacaatgttgtgcaagaaaatgaaaaactcgtgcaattgtttggggatgtttattcaatacttctgACGAGGGGCATTCAGTATATTCTGTCAC---TGGTCTTC
gi|112719 : tACGAGAGGCATTCAATAATTTGTGTCACTAATGACCTTCGATAGAAACAATGTTGCGCAAG--------AACATGAAAAA---ATCGTGCAATTGTTTGGGGATG-TTTGTTCAGAACAC-----C-------TCACTATTTAATCCAAT----------------AAGATATGCGTTGTTGAAT----------------TGCAGTTGCTATATTTCAATGTC-ATAATGAAACCTG
gi|112720 : tACGAGGGGCATTTAATATATTCTGTCAC---TGGTCTTCtaa
gi|112721 : tACGAGGGACATTCAATAAATTCTGTCACT
gi|112722 : tACGAGGGGCATTCAATATACTCTGTCACTA---GTCTTCGGT
gi|112723 : tACGAGGGGCGTTCAATAAATTCTGTCACTAATGGCCTTCCATAGAAACAATGTTGCATAAG--------AACATGAAAAAC--CTTGTGCAATTGTTTGGGGATG-TTTATTCAATACACAGGT-CTGCAAATTCTCAGTTTAACCCGATTATAATTG----AC-CAATATATTCATTGTTGAATTATACAGAC--TCATGTACAGTGGCTATATTTCAATGTC-TTAATGAAACCTGA-A--GAAAAATTAGAAAT
gi|112724 : ACAAGGGACATTCAATAAATCCTGTCACTGATGGCCTTTCATAGAAACATCTTTGGATAAC--------AGCGTGGACAAC---TCTTGAAATTGATTGAGGATA-TAT-TTCCATATCC-----AAGCGAA------GTTTAATTCGATGATAAATA----AC-CGTGATATCCAGTGTTGAAATATACGTAC--TCAT-------------ATTTCAATGTT-GAAGTAAACCCTAA-A--GACAAATTACAAAT
gi|112725 : GAGGGGCTATCAATAAATTCTGCAACTAATGTCCATCCGTAGAAACAATGTTGCGTAAG--------AACATAAAAAAC--GCC-TGCAATTGTTTGGTGATG-TTTATTAAATACAT-----CTGCGAATTCTC------------------------------AGATATTCATTGTTGCTTTATACACAC--TCATATACAGTGGCTATATTTCAATATC-AAAATGAAACATGA-A--GAAAAAAGAGAAAT
gi|112726 : ATTCAATAAGTTCTATCACTAATGGCCTTCCGTAGAAACAATGTGGCGTAAG--------AACATGAAAAAT--G-CATGCAATTATTTAGGGATG-TTTATTCAATACAC-----ATGCGACTTTTCAATTAAATCCGATTATTATT--------CA---TATTCATTGTTCAATTATACACAC--TCATGTAGAGTGGCTATATTTCAATGTT-ATAATGAAACCTGA-A--GAAACATTAGAAAT
gi|112727 : AAATAATGTTGCGTAAA--------AACATGAGAAAC---TCTTGCAATTGTTTGGGGATA-TTTATCAAATACA
gi|112728 : GGATA-CTTATT-AACAAAC---------GAATTCTCAATTTAATCCTATTATAATTG----AC-AAAGATATTCATTGTTCAATAATGCACAC--TCATGCATAGTTGCTTTATTTCAAATTC-ATAATGAAACCTGA-A--GGAAAAGTATAAAT
gi|112729 : TCTAGATTTGATCTGATAACAGCTA----AC-CAAATTGTTCATTGTTGAATTATATGGAC--TAATATATAGTGGTTA-ATTTTACAGTCGAGAATAAAA-CTGA-A--ATAAGAT
Alignments
lowQualScore : 222222 11111
lowQualScore : 88888888 000000 2 00000 4444 2 22 0 2 2 33
lowQualScore : ........ ...... . ..... .... . .. . . . ..
lowQualScore : 11111111 222222 1 33333 7777 2 99 1 1 4 22
consensus : ACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTGCGTAAG--------AACATGAAAAAC--CTCGTGCAATTGTTTGGGGATG-TTTATTCAATACAC-----CTGCGAATTCTCAATTTAATCCGATTATAATTG----AC-CAAGATATTCATTGTTGAATTATACACAC--TCATGTACAGTGGCTATATTTCAATGTC-ATAATGAAACCTGA-A--GAAAAATTAGAAAT
Reference ( family-687 ) : ACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTGCGTAAG--------AACATGAAAAAC--CTCGTGCAATTGTTTGGGGATG-TTTATTCAATACAC-----CTGCGAATTCTCAATTTAATCCGATTATAATTG----AC-CAAGATATTCATTGTTGAATTATACACAC--TCATGTACAGTGGCTATATTTCAATGTC-ATAATGAAACCTGA-A--GAAAAATTAGAAAT
gi|112703 : ACAAGGGGCATTCAATAAATTCTGTCACTAATGGCATTCTGTTGAAACAATGTTGCGTAAG--------AACACTAAAAAC--TT-GTACAATTGTTTGGGGATG-ATTATTCAACAGAC-----CTGCGAATTCTCAATTTAATCCGATTATAACTG----AC-CACGATATTCATTGTTGAATTATACACAC--TCATGTACAGTGGCTATATTTCAATGTC-ATAATGAAACCTGACA--AAAAAATTAGAAAT
gi|112704 : tACGAGGGGCATTCAATAAATTCTGTCGTTAATGATTTTCTGTAGGAACAATGTTGCGTAAG--------TACATGAAAAAC--TT-GTGCAATTGTTTGGGGATA-TTTATTCAATAAAC-----TAGCGAATTCTTAAGTTAATCTAATTATAATTG----AC-CAAGATATTCATTGTTGAATTATACACAC--TCGTGTACAGTGGCTATTTTTCAATGTC-ATAATGAAACCT-A-A--GAAAAATTAGAAAT
gi|112705 : tACGAGGGGCATTCAATAAATTCTGTCACTAGTGGCCTTCCGTAGAAACAATGTTTCGTAAG--------AACATGAAAAACTACTCGTGCAATTGT-------------ATTCAATACAC-----CTGCGAATTCTCAATTTAATCCGATTATAATTG----AC-CAAGATATTCATTGTTGAATTAT--ACAC--TCATGTACAGTGGCTTTATTTCAATGTC-ATAGCGAAAACTGA-A--
gi|112706 : tGGGGCATTCATTAAATTATGTCACTAATGGCCTTCCGTAGACACGATGTTGCGTAAG--------AACATAAAAA----CAGGTGCAATGAATTTGGAATG-TTT-TTCAATACAC-----CTGCGAATTCTCAATTTAATCCGATTATAATTG----AC-CAAGATATGCATTGTTGAATTATACACAC--TCATGTACAGTGGATATCTTTCAATGCA-ATAATGAAATCTGA-A--GAAAAATT
gi|112707 : tactgCGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCTGTAGAAAAAATGTTGCATAAG--------AACATGAAAAAC--TT-GTGCAATTGTTTGGGGATG-TTTATTCAATACAC-----CTGCAAATTCTGAATTCAACCCAATTATAATTG----AA-CAAGATATTCATTGTTGAATTACACACAC--TC---------------------ATGTC-ATAATGAAACCTGG-A--GAAAAATAAGAAAT
gi|112708 : tgACGAGGGTCATTCAATAAATTATGTCTCTAGTGGTCTTCCGTAGAAACAAGGTTGTGTAAA--------AACATGAACAAC--TT-GTGCAGTTATATGGGAATG-TTTATTCAGTACAC-----CTGCAAATTCTCAACTTAATAAAATTACAATTG----AC-CAAGATATTCATTGTTGAATTACACACAT--TCATGTACAGTGGTTATATTTCAATGTC-ATAATAAAACCAGA-A--AAAAA---AGAAAT
gi|112709 : tACGAGGGGCATTCAATATATTCTGTCACT
gi|112710 : tACGAGGGAAATTCAATAAATTCTGTCACTACTGGTCATCCGTAGAAACAATGATGTACAAG--------AACATGACTAA---CGCGTGGAATCGTTTGGGGATATTTTAATCAATACAC-----CTGTTGATTCTCAATTTCATCCGATTATAATTG----AT-CAAGATATTTATTGTTGAATTATACACAC--TCATTTATAGTGGCTATATTCAAATGCC-ATAATAAAACCGGA-A--GAAAAATTAGAAGT
gi|112711 : tGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATATTGCGTAAG--------AACATGAAAAA---CTCGTGC-ATTGTTTGGGGATA-TTTATTCAATACAC-----CTTCAAATTCTCAATTTATCCCGAATATAATTGAAATAT-GAAGATATTCATTGTTGAATGTTACACAC--TCATG-------------TTTCAATGTC-ATAATGGAACCTGA-A--AAAAA--TAGAAAT
gi|112712 : taaACGAGGGGCATTCAATAAATTCTGTTACT
gi|112713 : tACGAGGGGCATTCAATAA-TTCTGCCATTTATAGCCATCCGTAGAAACAATGTTACGTAAGAACATGGAAACATGGAAAAC--CT-GTTCAATTGTTT-AGGATG-TTTATTCAATAGACCTGCACTGCGAATTCTATATTTAATCATATTATAATTG----ACTCAAGATATTTATTGTTGAATTATTCACAC--TCATGTACAGT-GCTATACTTAAATGCC-ATAATGAAAAATGA-AATGAAAAATTAGAAAT
gi|112714 : tACAATGGGTATTCAATAAATTCTGTCACTAATTGCCTTCCGTAGAACCAATGTTGTGTAAG--------AACATGAAAAA---CTGGTGTAAATGTTTGGGGATG-GTACTTTAATACAT-----CTGCGAATT-TCAATTTAGTCTGATTATAATTG----AC-CAAGGTATTCATTGTTGAATTATACACACATTCATATACA-TA--TATATTTTAATGTC-ATAATGTAACCTAA-C--AATAAAATACAAAT
gi|112715 : tACGAGGGGCATTCAATATATTCTGTCAC---TGGTCTTC
gi|112716 : tACGACGGGCATTCAATAAATTTTGTCACTAATGGCCTTCCGTAGAAACAATGTTACATAAG--------AACATGAAAAA---CTCGTGTAATTGTTTGGGGTTG-TTTATACAATACAC-----ATGTGAATTCTCAA-TCAA----ATTTTAATTT----AC-AAATATATTCATTGTCGAATTATACACAC--TCATGTACAGTGGCTTAATTTCAAGGTC-ATA--GAAA
gi|112717 : tACGAGGGGTATTCAATAAATTCTGTCACTTATGACCTTCCGTGGAAACAATGTTGTGCAAG--------AAAATGAAAAA---CTCGTGCAATTGTTTGGGGATG-TTTATTCAATACTT-----CTGCG
gi|112717 : tCGTTGTTGAATTATACACAC--TCATGTACAGTGGCTAT-T-----TGTC-ATAATGAAACCTGA-A--AAAAAAttgttgaattatacacactcatgtacagtggctatttgtcataatgaaacctgaaaaaaaa
gi|112718 : tacgaggggtattcaataaattctgtcacttatgaccttccgtggaaacaatgttgtgcaagaaaatgaaaaactcgtgcaattgtttggggatgtttattcaatacttctgACGAGGGGCATTCAGTATATTCTGTCAC---TGGTCTTC
gi|112719 : tACGAGAGGCATTCAATAATTTGTGTCACTAATGACCTTCGATAGAAACAATGTTGCGCAAG--------AACATGAAAAA---ATCGTGCAATTGTTTGGGGATG-TTTGTTCAGAACAC-----C-------TCACTATTTAATCCAAT----------------AAGATATGCGTTGTTGAAT----------------TGCAGTTGCTATATTTCAATGTC-ATAATGAAACCTG
gi|112720 : tACGAGGGGCATTTAATATATTCTGTCAC---TGGTCTTCtaa
gi|112721 : tACGAGGGACATTCAATAAATTCTGTCACT
gi|112722 : tACGAGGGGCATTCAATATACTCTGTCACTA---GTCTTCGGT
gi|112723 : tACGAGGGGCGTTCAATAAATTCTGTCACTAATGGCCTTCCATAGAAACAATGTTGCATAAG--------AACATGAAAAAC--CTTGTGCAATTGTTTGGGGATG-TTTATTCAATACACAGGT-CTGCAAATTCTCAGTTTAACCCGATTATAATTG----AC-CAATATATTCATTGTTGAATTATACAGAC--TCATGTACAGTGGCTATATTTCAATGTC-TTAATGAAACCTGA-A--GAAAAATTAGAAAT
gi|112724 : ACAAGGGACATTCAATAAATCCTGTCACTGATGGCCTTTCATAGAAACATCTTTGGATAAC--------AGCGTGGACAAC---TCTTGAAATTGATTGAGGATA-TAT-TTCCATATCC-----AAGCGAA------GTTTAATTCGATGATAAATA----AC-CGTGATATCCAGTGTTGAAATATACGTAC--TCAT-------------ATTTCAATGTT-GAAGTAAACCCTAA-A--GACAAATTACAAAT
gi|112725 : GAGGGGCTATCAATAAATTCTGCAACTAATGTCCATCCGTAGAAACAATGTTGCGTAAG--------AACATAAAAAAC--GCC-TGCAATTGTTTGGTGATG-TTTATTAAATACAT-----CTGCGAATTCTC------------------------------AGATATTCATTGTTGCTTTATACACAC--TCATATACAGTGGCTATATTTCAATATC-AAAATGAAACATGA-A--GAAAAAAGAGAAAT
gi|112726 : ATTCAATAAGTTCTATCACTAATGGCCTTCCGTAGAAACAATGTGGCGTAAG--------AACATGAAAAAT--G-CATGCAATTATTTAGGGATG-TTTATTCAATACAC-----ATGCGACTTTTCAATTAAATCCGATTATTATT--------CA---TATTCATTGTTCAATTATACACAC--TCATGTAGAGTGGCTATATTTCAATGTT-ATAATGAAACCTGA-A--GAAACATTAGAAAT
gi|112727 : AAATAATGTTGCGTAAA--------AACATGAGAAAC---TCTTGCAATTGTTTGGGGATA-TTTATCAAATACA
gi|112728 : GGATA-CTTATT-AACAAAC---------GAATTCTCAATTTAATCCTATTATAATTG----AC-AAAGATATTCATTGTTCAATAATGCACAC--TCATGCATAGTTGCTTTATTTCAAATTC-ATAATGAAACCTGA-A--GGAAAAGTATAAAT
gi|112729 : TCTAGATTTGATCTGATAACAGCTA----AC-CAAATTGTTCATTGTTGAATTATATGGAC--TAATATATAGTGGTTA-ATTTTACAGTCGAGAATAAAA-CTGA-A--ATAAGAT
blockSeqs : AACATGGA CTACTC T CTGCA AAAT T AT G . AT
blockSeqs : . CCTT . AGGT . . . . . .
blockSeqs : . CGCC . . . . . . . .
blockSeqs : . CTT . . . . . . . .
blockSeqs : . CAG . . . . . . . .
blockSeqs : . CTT . . . . . . . .
blockSeqs : . CTT . . . . . . . .
blockSeqs : . CGC . . . . . . . .
blockSeqs : . CTC . . . . . . . .
blockSeqs : . CCT . . . . . . . .
blockSeqs : . CTG . . . . . . . .
blockSeqs : . CTC . . . . . . . .
blockSeqs : . CTC . . . . . . . .
blockSeqs : . ATC . . . . . . . .
blockSeqs : . CTC . . . . . . . .
blockSeqs : . TGC . . . . . . . .
blockSeqs : . CTC . . . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : ACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTGCGTAAG--------AACATGAAAAAC--CTCGTGCAATTGTTTGGGGATG-TTTATTCAATACAC-----CTGCGAATTCTCAATTTAATCCGATTATAATTG----AC-CAAGATATTCATTGTTGAATTATACACAC--TCATGTACAGTGGCTATATTTCAATGTC-ATAATGAAACCTGA-A--GAAAAATTAGAAAT
finalCons : ACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTGCGTAAG--------AACATGAAAAAC--CTCGTGCAATTGTTTGGGGATG-TTTATTCAATACAC-----CTGCGAATTCTCAATTTAATCCGATTATAATTG----AC-CAAGATATTCATTGTTGAATTATACACAC--TCATGTACAGTGGCTATATTTCAATGTC-ATAATGAAACCTGA-A--GAAAAATTAGAAAT
Alignments
lowQualScore : 222222 11111
lowQualScore : 88888888 000000 2 00000 4444 2 22 0 2 2 33
lowQualScore : ........ ...... . ..... .... . .. . . . ..
lowQualScore : 11111111 222222 1 33333 7777 2 99 1 1 4 22
consensus : ACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTGCGTAAG--------AACATGAAAAAC--CTCGTGCAATTGTTTGGGGATG-TTTATTCAATACAC-----CTGCGAATTCTCAATTTAATCCGATTATAATTG----AC-CAAGATATTCATTGTTGAATTATACACAC--TCATGTACAGTGGCTATATTTCAATGTC-ATAATGAAACCTGA-A--GAAAAATTAGAAAT
Reference ( family-687 ) : ACGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATGTTGCGTAAG--------AACATGAAAAAC--CTCGTGCAATTGTTTGGGGATG-TTTATTCAATACAC-----CTGCGAATTCTCAATTTAATCCGATTATAATTG----AC-CAAGATATTCATTGTTGAATTATACACAC--TCATGTACAGTGGCTATATTTCAATGTC-ATAATGAAACCTGA-A--GAAAAATTAGAAAT
gi|112703 : ACAAGGGGCATTCAATAAATTCTGTCACTAATGGCATTCTGTTGAAACAATGTTGCGTAAG--------AACACTAAAAAC--TT-GTACAATTGTTTGGGGATG-ATTATTCAACAGAC-----CTGCGAATTCTCAATTTAATCCGATTATAACTG----AC-CACGATATTCATTGTTGAATTATACACAC--TCATGTACAGTGGCTATATTTCAATGTC-ATAATGAAACCTGACA--AAAAAATTAGAAAT
gi|112704 : tACGAGGGGCATTCAATAAATTCTGTCGTTAATGATTTTCTGTAGGAACAATGTTGCGTAAG--------TACATGAAAAAC--TT-GTGCAATTGTTTGGGGATA-TTTATTCAATAAAC-----TAGCGAATTCTTAAGTTAATCTAATTATAATTG----AC-CAAGATATTCATTGTTGAATTATACACAC--TCGTGTACAGTGGCTATTTTTCAATGTC-ATAATGAAACCT-A-A--GAAAAATTAGAAAT
gi|112705 : tACGAGGGGCATTCAATAAATTCTGTCACTAGTGGCCTTCCGTAGAAACAATGTTTCGTAAG--------AACATGAAAAACTACTCGTGCAATTGT-------------ATTCAATACAC-----CTGCGAATTCTCAATTTAATCCGATTATAATTG----AC-CAAGATATTCATTGTTGAATTAT--ACAC--TCATGTACAGTGGCTTTATTTCAATGTC-ATAGCGAAAACTGA-A--
gi|112706 : tGGGGCATTCATTAAATTATGTCACTAATGGCCTTCCGTAGACACGATGTTGCGTAAG--------AACATAAAAA----CAGGTGCAATGAATTTGGAATG-TTT-TTCAATACAC-----CTGCGAATTCTCAATTTAATCCGATTATAATTG----AC-CAAGATATGCATTGTTGAATTATACACAC--TCATGTACAGTGGATATCTTTCAATGCA-ATAATGAAATCTGA-A--GAAAAATT
gi|112707 : tactgCGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCTGTAGAAAAAATGTTGCATAAG--------AACATGAAAAAC--TT-GTGCAATTGTTTGGGGATG-TTTATTCAATACAC-----CTGCAAATTCTGAATTCAACCCAATTATAATTG----AA-CAAGATATTCATTGTTGAATTACACACAC--TC---------------------ATGTC-ATAATGAAACCTGG-A--GAAAAATAAGAAAT
gi|112708 : tgACGAGGGTCATTCAATAAATTATGTCTCTAGTGGTCTTCCGTAGAAACAAGGTTGTGTAAA--------AACATGAACAAC--TT-GTGCAGTTATATGGGAATG-TTTATTCAGTACAC-----CTGCAAATTCTCAACTTAATAAAATTACAATTG----AC-CAAGATATTCATTGTTGAATTACACACAT--TCATGTACAGTGGTTATATTTCAATGTC-ATAATAAAACCAGA-A--AAAAA---AGAAAT
gi|112709 : tACGAGGGGCATTCAATATATTCTGTCACT
gi|112710 : tACGAGGGAAATTCAATAAATTCTGTCACTACTGGTCATCCGTAGAAACAATGATGTACAAG--------AACATGACTAA---CGCGTGGAATCGTTTGGGGATATTTTAATCAATACAC-----CTGTTGATTCTCAATTTCATCCGATTATAATTG----AT-CAAGATATTTATTGTTGAATTATACACAC--TCATTTATAGTGGCTATATTCAAATGCC-ATAATAAAACCGGA-A--GAAAAATTAGAAGT
gi|112711 : tGAGGGGCATTCAATAAATTCTGTCACTAATGGCCTTCCGTAGAAACAATATTGCGTAAG--------AACATGAAAAA---CTCGTGC-ATTGTTTGGGGATA-TTTATTCAATACAC-----CTTCAAATTCTCAATTTATCCCGAATATAATTGAAATAT-GAAGATATTCATTGTTGAATGTTACACAC--TCATG-------------TTTCAATGTC-ATAATGGAACCTGA-A--AAAAA--TAGAAAT
gi|112712 : taaACGAGGGGCATTCAATAAATTCTGTTACT
gi|112713 : tACGAGGGGCATTCAATAA-TTCTGCCATTTATAGCCATCCGTAGAAACAATGTTACGTAAGAACATGGAAACATGGAAAAC--CT-GTTCAATTGTTT-AGGATG-TTTATTCAATAGACCTGCACTGCGAATTCTATATTTAATCATATTATAATTG----ACTCAAGATATTTATTGTTGAATTATTCACAC--TCATGTACAGT-GCTATACTTAAATGCC-ATAATGAAAAATGA-AATGAAAAATTAGAAAT
gi|112714 : tACAATGGGTATTCAATAAATTCTGTCACTAATTGCCTTCCGTAGAACCAATGTTGTGTAAG--------AACATGAAAAA---CTGGTGTAAATGTTTGGGGATG-GTACTTTAATACAT-----CTGCGAATT-TCAATTTAGTCTGATTATAATTG----AC-CAAGGTATTCATTGTTGAATTATACACACATTCATATACA-TA--TATATTTTAATGTC-ATAATGTAACCTAA-C--AATAAAATACAAAT
gi|112715 : tACGAGGGGCATTCAATATATTCTGTCAC---TGGTCTTC
gi|112716 : tACGACGGGCATTCAATAAATTTTGTCACTAATGGCCTTCCGTAGAAACAATGTTACATAAG--------AACATGAAAAA---CTCGTGTAATTGTTTGGGGTTG-TTTATACAATACAC-----ATGTGAATTCTCAA-TCAA----ATTTTAATTT----AC-AAATATATTCATTGTCGAATTATACACAC--TCATGTACAGTGGCTTAATTTCAAGGTC-ATA--GAAA
gi|112717 : tACGAGGGGTATTCAATAAATTCTGTCACTTATGACCTTCCGTGGAAACAATGTTGTGCAAG--------AAAATGAAAAA---CTCGTGCAATTGTTTGGGGATG-TTTATTCAATACTT-----CTGCG
gi|112717 : tCGTTGTTGAATTATACACAC--TCATGTACAGTGGCTAT-T-----TGTC-ATAATGAAACCTGA-A--AAAAAAttgttgaattatacacactcatgtacagtggctatttgtcataatgaaacctgaaaaaaaa
gi|112718 : tacgaggggtattcaataaattctgtcacttatgaccttccgtggaaacaatgttgtgcaagaaaatgaaaaactcgtgcaattgtttggggatgtttattcaatacttctgACGAGGGGCATTCAGTATATTCTGTCAC---TGGTCTTC
gi|112719 : tACGAGAGGCATTCAATAATTTGTGTCACTAATGACCTTCGATAGAAACAATGTTGCGCAAG--------AACATGAAAAA---ATCGTGCAATTGTTTGGGGATG-TTTGTTCAGAACAC-----C-------TCACTATTTAATCCAAT----------------AAGATATGCGTTGTTGAAT----------------TGCAGTTGCTATATTTCAATGTC-ATAATGAAACCTG
gi|112720 : tACGAGGGGCATTTAATATATTCTGTCAC---TGGTCTTCtaa
gi|112721 : tACGAGGGACATTCAATAAATTCTGTCACT
gi|112722 : tACGAGGGGCATTCAATATACTCTGTCACTA---GTCTTCGGT
gi|112723 : tACGAGGGGCGTTCAATAAATTCTGTCACTAATGGCCTTCCATAGAAACAATGTTGCATAAG--------AACATGAAAAAC--CTTGTGCAATTGTTTGGGGATG-TTTATTCAATACACAGGT-CTGCAAATTCTCAGTTTAACCCGATTATAATTG----AC-CAATATATTCATTGTTGAATTATACAGAC--TCATGTACAGTGGCTATATTTCAATGTC-TTAATGAAACCTGA-A--GAAAAATTAGAAAT
gi|112724 : ACAAGGGACATTCAATAAATCCTGTCACTGATGGCCTTTCATAGAAACATCTTTGGATAAC--------AGCGTGGACAAC---TCTTGAAATTGATTGAGGATA-TAT-TTCCATATCC-----AAGCGAA------GTTTAATTCGATGATAAATA----AC-CGTGATATCCAGTGTTGAAATATACGTAC--TCAT-------------ATTTCAATGTT-GAAGTAAACCCTAA-A--GACAAATTACAAAT
gi|112725 : GAGGGGCTATCAATAAATTCTGCAACTAATGTCCATCCGTAGAAACAATGTTGCGTAAG--------AACATAAAAAAC--GCC-TGCAATTGTTTGGTGATG-TTTATTAAATACAT-----CTGCGAATTCTC------------------------------AGATATTCATTGTTGCTTTATACACAC--TCATATACAGTGGCTATATTTCAATATC-AAAATGAAACATGA-A--GAAAAAAGAGAAAT
gi|112726 : ATTCAATAAGTTCTATCACTAATGGCCTTCCGTAGAAACAATGTGGCGTAAG--------AACATGAAAAAT--G-CATGCAATTATTTAGGGATG-TTTATTCAATACAC-----ATGCGACTTTTCAATTAAATCCGATTATTATT--------CA---TATTCATTGTTCAATTATACACAC--TCATGTAGAGTGGCTATATTTCAATGTT-ATAATGAAACCTGA-A--GAAACATTAGAAAT
gi|112727 : AAATAATGTTGCGTAAA--------AACATGAGAAAC---TCTTGCAATTGTTTGGGGATA-TTTATCAAATACA
gi|112728 : GGATA-CTTATT-AACAAAC---------GAATTCTCAATTTAATCCTATTATAATTG----AC-AAAGATATTCATTGTTCAATAATGCACAC--TCATGCATAGTTGCTTTATTTCAAATTC-ATAATGAAACCTGA-A--GGAAAAGTATAAAT
gi|112729 : TCTAGATTTGATCTGATAACAGCTA----AC-CAAATTGTTCATTGTTGAATTATATGGAC--TAATATATAGTGGTTA-ATTTTACAGTCGAGAATAAAA-CTGA-A--ATAAGAT