lowQualScore : 11 11111
lowQualScore : 22 11 55555 222 4 55
lowQualScore : .. .. ..... ... . ..
lowQualScore : 11 55 44444 777 6 11
consensus : TCAA--ATTTT-ATTGGCAA--TTTCGGCA---A-ACATTTGCCTTTGGCCATTTACAA-NGTTTT
Reference ( gi|137059 ) : TCAA--ATTTT-TTTGGCAA--TTTCGGCA---A-ACATTTGCCTTTGGCCATTTACAA-AGTTTT
gi|137060 : TCAA--GTTTT-ATTGGCAA--TTTTGGCA---A-ACATTTGCCTTTGGCCATTTACAA-AGTTTT
gi|137061 : TCAA--ATTTT-ATTGGCAA--TTTCGGCA---A-ACATTTGCCTTTGGTCATTTACAA-AGTATT
gi|137062 : TCAC--ATTTT-ATTGGCA---TTTCGACA---A-ACATTTGCCTTTGGCCATTTGCAA-AATTTT
gi|137064 : TCAA--ATTTT-ATTGGCAA--TTTCGGTC---A-ACATTTGCCTTTAGACATTTACAA-TGTTTT
gi|137063 : TCAA--ATTTT-ATTTGCAG--TGTCGGCA---A-ACATTTGCATTTGGCCTTTTACAA-TGTT
gi|137070 : TCAA--GTTTA-TTCAGCAA--T--CGGCA---A-A-GTTTGCCTTTGGCCATTTACAG-AGTTTT
gi|137072 : TCAA--GTTTA-TTCAGCAA--TT--GGCA---A-AT-TTTACCTTTGGCCATTTACAA-AGTTTT
gi|137068 : TCAA--AGTTT-ATTAGCAA--CT-CGGCA---AGACATTTGCCTTTGGCTATTTACAA-
gi|137067 : TCAA--AGTTT-ATTAGCAA--CT-CGGCA---ACACATTTGCCTTTGACCATTTACAA-
gi|137075 : TCAA----CTT-TTTGGCAAACTATCAGCA---A-ACATATGCCTTTGGCCATTTACAATAATTTT
gi|137069 : TCAA--GTTTA-TTCAGTAA--T--CGGCA---A-AT-TTTGCCTTTGACCATTTACAA-AGTTT
gi|137076 : TCAA--GTTCA-TTCAGCAA--T--CGGCA---A-AT-TTTGTCTTCGGCCATTTACAA-AGTTTT
gi|137073 : tcaaaTCAA--AGTTT-ATTAGCAA--CT-CGGCA---AGACATTTGTCTTTGGTCATTTACAA-
gi|137074 : TCAATCATTTTATTCAGCAA--T--CAGTA---A-AT-TTTGCCTTTGGCCATTTACAA-GGTTTT
gi|137066 : TCAA--ATTAT-ATTGGGAA--CATCG-CA---A-ACATTTGCCTTTGGTCATTTACA
gi|137071 : TCAA--AGTTT-ATTTGCAA--GT-CGGAAGAAA-ACATTTGCCTTTGGCGATTTACAA-AGATTT
gi|137077 : CAA--ATGTT-ATTGGCAA--TTTCGGCA---A-ATATTTGCCTTTGGCCATTTACAA-TGTTT
gi|137078 : CAA--ATTAT-ATTGACAA--TTTCGGCA---A-ACATTTGCCTTTGGCAATTTACAA-TGTTTT
gi|137080 : AA--ATTGT-ATTGGCAA--TTTCGGCA---A-ACATTCGCCTTTGGCCATTTAAAA-TGTTTT
gi|137079 : AA--ATTCA-TTTG-CAA--TTTGGTAA---A-ACATTTGCCTTTGGCCAATTACAA-AGATTT
gi|137065 : caA--ATTGT-ATTGGTAA--TTTCGGCA---A-ACATTTGCCTTTGGACATTTACAT-TGTTTT
gi|137081 : tcaaattgA--ATTTT-ATTGGCAA--TATTAGCA---A-GCATTTGCCTTTGGCCCTTTACAA-TATTTT
gi|137082 : A--ATTTT-ATTGGCAAACTATCAGCA---A-ACATATGCCTTTGGCCATTTACA
gi|137083 : A--ATTTT-ATTGGCAAACTATCAGCA---A-ACATATGCCTTTGACCATTTACAA-TATTTT
gi|137084 : A--ATTTT-ATTGGCAAACTATCAGCA---A-ACATATGCCTTTGGCCACTTACAA-
gi|137085 : A--ATTTT-ATTGGCAAACTATCAGCA---A-AAATATGCCTTTGGCCATTTACAA-TATTTT
Alignments
lowQualScore : 11111
lowQualScore : 22 3333 7 33333 222 4 22
lowQualScore : .. .... . ..... ... . ..
lowQualScore : 00 1111 4 88888 666 4 66
consensus : TCAA--AT----TTTATT-GGCAA--TTTCGGCA---A-ACATTTGCCTTTGGCCATTTACAA-NGTTTT
Reference ( family-685 ) : TCAA--AT----TTTATT-GGCAA--TTTCGGCA---A-ACATTTGCCTTTGGCCATTTACAA-NGTTTT
gi|137059 : TCAA--AT----TTTTTT-GGCAA--TTTCGGCA---A-ACATTTGCCTTTGGCCATTTACAA-AGTTTT
gi|137060 : TCAA--GT----TTTATT-GGCAA--TTTTGGCA---A-ACATTTGCCTTTGGCCATTTACAA-AGTTTT
gi|137061 : TCAA--AT----TTTATT-GGCAA--TTTCGGCA---A-ACATTTGCCTTTGGTCATTTACAA-AGTATT
gi|137062 : TCAC--AT----TTTATT-GGCA---TTTCGACA---A-ACATTTGCCTTTGGCCATTTGCAA-AATTTT
gi|137063 : TCAA--AT----TTTATT-TGCAG--TGTCGGCA---A-ACATTTGCATTTGGCCTTTTACAA-TGTT
gi|137064 : TCAA--AT----TTTATT-GGCAA--TTTCGGTC---A-ACATTTGCCTTTAGACATTTACAA-TGTTTT
gi|137065 : A--AT----TGTATT-GGTAA--TTTCGGCA---A-ACATTTGCCTTTGGACATTTACAT-TGTTTT
gi|137066 : tcaaattgTCAA--AT----TATATT-GGGAA--CATCG-CA---A-ACATTTGCCTTTGGTCATTTACA
gi|137067 : TCAA--AG----TTTATT-AGCAA--CT-CGGCA---ACACATTTGCCTTTGACCATTTACAA-
gi|137068 : TCAA--AG----TTTATT-AGCAA--CT-CGGCA---AGACATTTGCCTTTGGCTATTTACAA-
gi|137069 : TCAA--GT----TT-ATTCAGTAA--T--CGGCA---A-AT-TTTGCCTTTGACCATTTACAA-AGTTT
gi|137070 : TCAA--GT----TT-ATTCAGCAA--T--CGGCA---A-A-GTTTGCCTTTGGCCATTTACAG-AGTTTT
gi|137071 : TCAA--AG----TTTATT-TGCAA--GT-CGGAAGAAA-ACATTTGCCTTTGGCGATTTACAA-AGATTT
gi|137072 : TCAA--GT----TT-ATTCAGCAA--TT--GGCA---A-AT-TTTACCTTTGGCCATTTACAA-AGTTTT
gi|137073 : TCAA--AG----TTTATT-AGCAA--CT-CGGCA---AGACATTTGTCTTTGGTCATTTACAA-
gi|137074 : TCAATCAT----TTTATTCAGCAA--T--CAGTA---A-AT-TTTGCCTTTGGCCATTTACAA-GGTTTT
gi|137075 : TCAA--CT----TTT--T-GGCAAACTATCAGCA---A-ACATATGCCTTTGGCCATTTACAATAATTTT
gi|137076 : TCAA--ATCAAGTTCATTCAGCAA--T--CGGCA---A-AT-TTTGTCTTCGGCCATTTACAA-AGTTTT
gi|137077 : CAA--AT----GTTATT-GGCAA--TTTCGGCA---A-ATATTTGCCTTTGGCCATTTACAA-TGTTT
gi|137078 : CAA--AT----TATATT-GACAA--TTTCGGCA---A-ACATTTGCCTTTGGCAATTTACAA-TGTTTT
gi|137079 : CAA--AA----TTCATT-TGCAA--TTTGGTAA---A-ACATTTGCCTTTGGCCAATTACAA-AGATTT
gi|137080 : AA--AT----TGTATT-GGCAA--TTTCGGCA---A-ACATTCGCCTTTGGCCATTTAAAA-TGTTTT
gi|137081 : A--AT----TTTATT-GGCAA--TATTAGCA---A-GCATTTGCCTTTGGCCCTTTACAA-TATTTT
gi|137082 : A--AT----TTTATT-GGCAAACTATCAGCA---A-ACATATGCCTTTGGCCATTTACA
gi|137083 : A--AT----TTTATT-GGCAAACTATCAGCA---A-ACATATGCCTTTGACCATTTACAA-TATTTT
gi|137084 : A--AT----TTTATT-GGCAAACTATCAGCA---A-ACATATGCCTTTGGCCACTTACAA-
gi|137085 : A--AT----TTTATT-GGCAAACTATCAGCA---A-AAATATGCCTTTGGCCATTTACAA-TATTTT
Alignments
lowQualScore : 11111
lowQualScore : 22 3333 7 33333 222 4 22
lowQualScore : .. .... . ..... ... . ..
lowQualScore : 00 1111 4 88888 666 4 66
consensus : TCAA--AT----TTTATT-GGCAA--TTTCGGCA---A-ACATTTGCCTTTGGCCATTTACAA-NGTTTT
Reference ( family-685 ) : TCAA--AT----TTTATT-GGCAA--TTTCGGCA---A-ACATTTGCCTTTGGCCATTTACAA-NGTTTT
gi|137059 : TCAA--AT----TTTTTT-GGCAA--TTTCGGCA---A-ACATTTGCCTTTGGCCATTTACAA-AGTTTT
gi|137060 : TCAA--GT----TTTATT-GGCAA--TTTTGGCA---A-ACATTTGCCTTTGGCCATTTACAA-AGTTTT
gi|137061 : TCAA--AT----TTTATT-GGCAA--TTTCGGCA---A-ACATTTGCCTTTGGTCATTTACAA-AGTATT
gi|137062 : TCAC--AT----TTTATT-GGCA---TTTCGACA---A-ACATTTGCCTTTGGCCATTTGCAA-AATTTT
gi|137063 : TCAA--AT----TTTATT-TGCAG--TGTCGGCA---A-ACATTTGCATTTGGCCTTTTACAA-TGTT
gi|137064 : TCAA--AT----TTTATT-GGCAA--TTTCGGTC---A-ACATTTGCCTTTAGACATTTACAA-TGTTTT
gi|137065 : A--AT----TGTATT-GGTAA--TTTCGGCA---A-ACATTTGCCTTTGGACATTTACAT-TGTTTT
gi|137066 : tcaaattgTCAA--AT----TATATT-GGGAA--CATCG-CA---A-ACATTTGCCTTTGGTCATTTACA
gi|137067 : TCAA--AG----TTTATT-AGCAA--CT-CGGCA---ACACATTTGCCTTTGACCATTTACAA-
gi|137068 : TCAA--AG----TTTATT-AGCAA--CT-CGGCA---AGACATTTGCCTTTGGCTATTTACAA-
gi|137069 : TCAA--GT----TT-ATTCAGTAA--T--CGGCA---A-AT-TTTGCCTTTGACCATTTACAA-AGTTT
gi|137070 : TCAA--GT----TT-ATTCAGCAA--T--CGGCA---A-A-GTTTGCCTTTGGCCATTTACAG-AGTTTT
gi|137071 : TCAA--AG----TTTATT-TGCAA--GT-CGGAAGAAA-ACATTTGCCTTTGGCGATTTACAA-AGATTT
gi|137072 : TCAA--GT----TT-ATTCAGCAA--TT--GGCA---A-AT-TTTACCTTTGGCCATTTACAA-AGTTTT
gi|137073 : TCAA--AG----TTTATT-AGCAA--CT-CGGCA---AGACATTTGTCTTTGGTCATTTACAA-
gi|137074 : TCAATCAT----TTTATTCAGCAA--T--CAGTA---A-AT-TTTGCCTTTGGCCATTTACAA-GGTTTT
gi|137075 : TCAA--CT----TTT--T-GGCAAACTATCAGCA---A-ACATATGCCTTTGGCCATTTACAATAATTTT
gi|137076 : TCAA--ATCAAGTTCATTCAGCAA--T--CGGCA---A-AT-TTTGTCTTCGGCCATTTACAA-AGTTTT
gi|137077 : CAA--AT----GTTATT-GGCAA--TTTCGGCA---A-ATATTTGCCTTTGGCCATTTACAA-TGTTT
gi|137078 : CAA--AT----TATATT-GACAA--TTTCGGCA---A-ACATTTGCCTTTGGCAATTTACAA-TGTTTT
gi|137079 : CAA--AA----TTCATT-TGCAA--TTTGGTAA---A-ACATTTGCCTTTGGCCAATTACAA-AGATTT
gi|137080 : AA--AT----TGTATT-GGCAA--TTTCGGCA---A-ACATTCGCCTTTGGCCATTTAAAA-TGTTTT
gi|137081 : A--AT----TTTATT-GGCAA--TATTAGCA---A-GCATTTGCCTTTGGCCCTTTACAA-TATTTT
gi|137082 : A--AT----TTTATT-GGCAAACTATCAGCA---A-ACATATGCCTTTGGCCATTTACA
gi|137083 : A--AT----TTTATT-GGCAAACTATCAGCA---A-ACATATGCCTTTGACCATTTACAA-TATTTT
gi|137084 : A--AT----TTTATT-GGCAAACTATCAGCA---A-ACATATGCCTTTGGCCACTTACAA-
gi|137085 : A--AT----TTTATT-GGCAAACTATCAGCA---A-AAATATGCCTTTGGCCATTTACAA-TATTTT
blockSeqs : TC CAAG C ACTAT GAA C TA
blockSeqs : . . C ACTAT . G A
blockSeqs : . . C ACTAT . G A
blockSeqs : . . C ACTAT . . A
blockSeqs : . . C ACTAT . . T
blockSeqs : . . . TTT . . T
blockSeqs : . . . TTT . . T
blockSeqs : . . . TTT . . A
blockSeqs : . . . TGT . . A
blockSeqs : . . . TTT . . A
blockSeqs : . . . TTT . . A
blockSeqs : . . . CAT . . G
blockSeqs : . . . TTT . . A
blockSeqs : . . . TTT . . T
blockSeqs : . . . TTT . . T
blockSeqs : . . . TTT . . A
blockSeqs : . . . TAT . . T
blockSeqs : . . . CT . . T
blockSeqs : . . . CT . . T
blockSeqs : . . . GT . . T
blockSeqs : . . . TT . .
blockSeqs : . . . CT . .
blockSeqs : . . . T . .
blockSeqs : . . . T . .
blockSeqs : . . . T . .
blockSeqs : . . . T . .
blockSeqCons :
originalCons : TCAA--AT----TTTATT-GGCAA--TTTCGGCA---A-ACATTTGCCTTTGGCCATTTACAA-NGTTTT
finalCons : TCAA--AT----TTTATT-GGCAA--TTTCGGCA---A-ACATTTGCCTTTGGCCATTTACAA-NGTTTT
Alignments
lowQualScore : 11111
lowQualScore : 22 3333 7 33333 222 4 22
lowQualScore : .. .... . ..... ... . ..
lowQualScore : 00 1111 4 88888 666 4 66
consensus : TCAA--AT----TTTATT-GGCAA--TTTCGGCA---A-ACATTTGCCTTTGGCCATTTACAA-NGTTTT
Reference ( family-685 ) : TCAA--AT----TTTATT-GGCAA--TTTCGGCA---A-ACATTTGCCTTTGGCCATTTACAA-NGTTTT
gi|137059 : TCAA--AT----TTTTTT-GGCAA--TTTCGGCA---A-ACATTTGCCTTTGGCCATTTACAA-AGTTTT
gi|137060 : TCAA--GT----TTTATT-GGCAA--TTTTGGCA---A-ACATTTGCCTTTGGCCATTTACAA-AGTTTT
gi|137061 : TCAA--AT----TTTATT-GGCAA--TTTCGGCA---A-ACATTTGCCTTTGGTCATTTACAA-AGTATT
gi|137062 : TCAC--AT----TTTATT-GGCA---TTTCGACA---A-ACATTTGCCTTTGGCCATTTGCAA-AATTTT
gi|137063 : TCAA--AT----TTTATT-TGCAG--TGTCGGCA---A-ACATTTGCATTTGGCCTTTTACAA-TGTT
gi|137064 : TCAA--AT----TTTATT-GGCAA--TTTCGGTC---A-ACATTTGCCTTTAGACATTTACAA-TGTTTT
gi|137065 : A--AT----TGTATT-GGTAA--TTTCGGCA---A-ACATTTGCCTTTGGACATTTACAT-TGTTTT
gi|137066 : tcaaattgTCAA--AT----TATATT-GGGAA--CATCG-CA---A-ACATTTGCCTTTGGTCATTTACA
gi|137067 : TCAA--AG----TTTATT-AGCAA--CT-CGGCA---ACACATTTGCCTTTGACCATTTACAA-
gi|137068 : TCAA--AG----TTTATT-AGCAA--CT-CGGCA---AGACATTTGCCTTTGGCTATTTACAA-
gi|137069 : TCAA--GT----TT-ATTCAGTAA--T--CGGCA---A-AT-TTTGCCTTTGACCATTTACAA-AGTTT
gi|137070 : TCAA--GT----TT-ATTCAGCAA--T--CGGCA---A-A-GTTTGCCTTTGGCCATTTACAG-AGTTTT
gi|137071 : TCAA--AG----TTTATT-TGCAA--GT-CGGAAGAAA-ACATTTGCCTTTGGCGATTTACAA-AGATTT
gi|137072 : TCAA--GT----TT-ATTCAGCAA--TT--GGCA---A-AT-TTTACCTTTGGCCATTTACAA-AGTTTT
gi|137073 : TCAA--AG----TTTATT-AGCAA--CT-CGGCA---AGACATTTGTCTTTGGTCATTTACAA-
gi|137074 : TCAATCAT----TTTATTCAGCAA--T--CAGTA---A-AT-TTTGCCTTTGGCCATTTACAA-GGTTTT
gi|137075 : TCAA--CT----TTT--T-GGCAAACTATCAGCA---A-ACATATGCCTTTGGCCATTTACAATAATTTT
gi|137076 : TCAA--ATCAAGTTCATTCAGCAA--T--CGGCA---A-AT-TTTGTCTTCGGCCATTTACAA-AGTTTT
gi|137077 : CAA--AT----GTTATT-GGCAA--TTTCGGCA---A-ATATTTGCCTTTGGCCATTTACAA-TGTTT
gi|137078 : CAA--AT----TATATT-GACAA--TTTCGGCA---A-ACATTTGCCTTTGGCAATTTACAA-TGTTTT
gi|137079 : CAA--AA----TTCATT-TGCAA--TTTGGTAA---A-ACATTTGCCTTTGGCCAATTACAA-AGATTT
gi|137080 : AA--AT----TGTATT-GGCAA--TTTCGGCA---A-ACATTCGCCTTTGGCCATTTAAAA-TGTTTT
gi|137081 : A--AT----TTTATT-GGCAA--TATTAGCA---A-GCATTTGCCTTTGGCCCTTTACAA-TATTTT
gi|137082 : A--AT----TTTATT-GGCAAACTATCAGCA---A-ACATATGCCTTTGGCCATTTACA
gi|137083 : A--AT----TTTATT-GGCAAACTATCAGCA---A-ACATATGCCTTTGACCATTTACAA-TATTTT
gi|137084 : A--AT----TTTATT-GGCAAACTATCAGCA---A-ACATATGCCTTTGGCCACTTACAA-
gi|137085 : A--AT----TTTATT-GGCAAACTATCAGCA---A-AAATATGCCTTTGGCCATTTACAA-TATTTT