lowQualScore                  :     1                                                                       11      111    333                                                                                                         1           
lowQualScore                  :     7            6           8    0      6   8                              88      444    333                6  4              1    5 1  1  3     1                       1   222                     6           
lowQualScore                  :     .            .           .    .      .   .                              ..      ...    ...                .  .              .    . .  .  .     .                       .   ...                     .           
lowQualScore                  :     0            0           0    8      4   0                              00      000    666                0  2              9    7 8  7  1     7                       6   999                     9           
consensus                     : AGCTTGCACACCTCGTGTTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAATC-TTTACG---AGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACTTACTGTA
Reference ( gi|25543 )        : AGCTAGCACACCTCGTGCTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAATG-TTTACG---AGAGCTTAATCATTCCGGATGACAACGGAAGAGCCCAAACT-CCAC-G-GA-CTAGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGGTACTTACTGTA
gi|25544                      : AGCTTGCACACCTCGTGTTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTACCTTACTTATATGGAAAATC-TTTATG---AGAGCGGAATCATTCTGTATGACGACAGAAGAGCTCAAACT-TCAC-A-GA-CTAGTTCA-CTCTACTTCCGGTTTTGAAAGAG-TGA---CAGTCAAGATACGCAGACTGGCTACTTACTGTA
gi|25545                      : AGCTTGCACACCTTGTGTTGTCCGGAATC-GTATATCAAACTGGA-AATGGCTGGTGCCTTACTTCTATGGAAAATC-TTTATG---AGAGCGGAATCATTCCGGATGATGACTGAAGAGCCCAAACT-TCAC-G-GA-CTAGTTCA-ATGTACTTCCGGTTCAGAGAAAG-TGA---CAGTAAAGATACGTAGACTGGTTTCTTACTGTA
gi|25546                      : AGCTTGCACACCTCGTGTTGTCCGGAATC-GTATACCAAACCGGA-AATGGCTGGTGCCTTACTGATATGGAAAATC-GTTACG---AGAGTGGAATCATTCCGGATGACGACAGAAGAGCCCAAACT-TCAC-G-GA-CAAGTTCT-CCCTACTTCCGGTTCGAAGAAAG-TGA---CATTTAAGATATGTAAACTGGCTACTTACTGTA
gi|25547                      :   CTTGCACACCTCGTGTTGTCCGGAATC-GTATATCAAACTGGA-AATGGCTGGTGCCTTACTTATATGGAAAATC-TTGACG---AGAGCGAAATCATTCCTGATGACGACGGAAGGGTCCGAACT-CCAC-G-GA-CTAGTTCA-CTCTACTTCCGGTTCGAAGAAAA-TGA---CAGTCAAGATAGGTAGACTGGCTACTTACTGTA
gi|25548                      :        ACGTTTTGTATTGTCGGGAACCCGGAT-TCAAAC-GCATAATGGCTGGTGCTCAACATGTACAGTAAACGCTTTATGATAAGGG---AATCATTCCGGAT
gi|25549                      :                                                                                                                       AGACCAAACT-CAAC-G-GA-CTGGTTCA-CTCTTCTTCCGGCTCGGAGAAAG-TGA---
gi|25550                      :                                                                                                                         CCCAAACT-CCACTG-AA-CTGGTTCA-CTCTGCTTCTAGTTC--AGAA-----A---CAATCAAGATGCGTAGATTGG---CTT-CTGTA
gi|25551                      :                                                                                                                         CTCAAACT-TCAC-G-GGGCTGGTTCG-CTCTGCTTCCTGTTCGAAAAAAG-TGA---tgta
gi|25552                      :                                                                                                                          CCAAACT-CCAC-A-AA-CTGGTTCA-CTCTATTCCCGGTTCTGAAAAAG-TGA---
gi|25553                      :                                                                                                                           CAAACT-CCAC-G-GA-CTGGTTCA-CTCCACTTTCGGTTCGGAAAAAG-TCA---CAGTCAAGGTGC
gi|25556                      :                                                                                                                           CAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCTGGCTCGGAGAAAG-TGA---
gi|25558                      :                                                                                                                           CAAACT-CCAC-G-GA-CTGGTTCAACTCTACTTCCGGTTCGGAGAGAG-TGA---
gi|25554                      :                                                                                                                           CAAACT-TCACTG-GA-CTGGTTCA-CTCTACTTCCTATT-GG-----G-TCA---CAGTCAAAATACATAGACTGGCTACT
gi|25555                      :                                                                                                                           CAAACTTCCAC-AAGA-CCAATTCA-CTC------CGGTTCGGAGAAAG-TGAACACAGTGAAGATACGTAGACTGACTAGTTA
gi|25559                      :                                                                                                                           CAAACC-CCAC-G-GA-CTGGTTCA-CTTTACTTCCGGTTCGGAGAAAT-TGA---
gi|25557                      :                                                                                                                           CAAACT-CCAG-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGGAAAA
gi|25560                      :                                                                                                                           CAAACT-CCAT-G-GT-CTGGTTAA-CTCTACTTCCGGTTCAGAGACAG-TGA---C
gi|25562                      :                                                                                                                           CAAACT-CAAC-G-GA-CTGGTTCA-TGC-ACTTCTGGTTCAGAGAATA-TGA---
gi|25561                      :                                                                                                                           CAAACT-TAACTG-GA-CTGGTTCA-GT----TTGCAGCT-GGAG-----T-----CATTCAAGATACGTAGACTGGCTACT
gi|25563                      :                                                                                                                            AAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---
gi|25564                      :                                                                                                                             AACT-TCAC-G-GA-CCGGTTCA-CTCTACTTCCAGCTCGGAAAAAG-T
gi|25565                      :                                                                                                                             AACT-CCAC-------TGG---A-CTTTACTTCCTATTCGG-------TCA---CAGTCAAGACAAGTAGACTGGCTAC
gi|25566                      :                                                                                                                                        -GA-CTGGTTCA-CTATACTTCCTGTTTGGAAAAAG-TGA---CAGTCAAATTGCATAGACTGGCTACT
gi|25567                      :                                                                                                                                          A-CTCGTTCA-CTCTACTTCCGGTTCGGAGAAGGTTAA---CACTC
gi|25568                      :                                                                                                                                                      TCTACTTGCGGTCCGG-------TCA---CAGTAAAGATATGTAGACTGGCTACT
gi|25569                      :                                                                                                                                                                         AAT-TGA---CAGTCAAGATACGTAGACTGGCTACT
gi|25570                      :                                                                                                                                                                          AG-TAA---CAGTCAAGATACGTAGACTGGCTACT





Alignments
lowQualScore                  :                              6           3   6                              6                                 1              1    5 1  1        1                       1   222                          3       
lowQualScore                  :                              .           .   .                              .                                 .              .    . .  .        .                       .   ...                          .       
lowQualScore                  :                              7           7   7                              7                                 4              8    5 7  7        7                       5   888                          1       
consensus                     : AGCTTGCACACCTCGTGTTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTTACGAGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACT-TACTGTA
Reference ( family-675 )      : AGCTTGCACACCTCGTGTTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTTACGAGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACT-TACTGTA
gi|25543                      : AGCTAGCACACCTCGTGCTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-GTTTACGAGAGCTTAATCATTCCGGATGACAACGGAAGAGCCCAAACT-CCAC-G-GA-CTAGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGGTACT-TACTGTA
gi|25544                      : AGCTTGCACACCTCGTGTTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTACCTTACTTATATGGAAAAT-CTTTATGAGAGCGGAATCATTCTGTATGACGACAGAAGAGCTCAAACT-TCAC-A-GA-CTAGTTCA-CTCTACTTCCGGTTTTGAAAGAG-TGA---CAGTCAAGATACGCAGACTGGCTACT-TACTGTA
gi|25545                      : AGCTTGCACACCTTGTGTTGTCCGGAATC-GTATATCAAACTGGA-AATGGCTGGTGCCTTACTTCTATGGAAAAT-CTTTATGAGAGCGGAATCATTCCGGATGATGACTGAAGAGCCCAAACT-TCAC-G-GA-CTAGTTCA-ATGTACTTCCGGTTCAGAGAAAG-TGA---CAGTAAAGATACGTAGACTGGTTTCT-TACTGTA
gi|25546                      : AGCTTGCACACCTCGTGTTGTCCGGAATC-GTATACCAAACCGGA-AATGGCTGGTGCCTTACTGATATGGAAAAT-CGTTACGAGAGTGGAATCATTCCGGATGACGACAGAAGAGCCCAAACT-TCAC-G-GA-CAAGTTCT-CCCTACTTCCGGTTCGAAGAAAG-TGA---CATTTAAGATATGTAAACTGGCTACT-TACTGTA
gi|25547                      :   CTTGCACACCTCGTGTTGTCCGGAATC-GTATATCAAACTGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTGACGAGAGCGAAATCATTCCTGATGACGACGGAAGGGTCCGAACT-CCAC-G-GA-CTAGTTCA-CTCTACTTCCGGTTCGAAGAAAA-TGA---CAGTCAAGATAGGTAGACTGGCTACT-TACTGTA
gi|25548                      :        ACGTTTTGTATTGTCGGGAACCCGGAT-TCAAAC-GCATAATGGCTGGTGCTCAACATGTACAGTAAACGCTTTATGATAAGGGAATCATTCCGGAT
gi|25549                      :                                                                                                                    AGACCAAACT-CAAC-G-GA-CTGGTTCA-CTCTTCTTCCGGCTCGGAGAAAG-TGA---
gi|25550                      :                                                                                                                      CCCAAACT-CCACTG-AA-CTGGTTCA-CTCTGCTTCTAGTTC--AGAA-----A---CAATCAAGATGCGTAGATTGGCTTCTGTA-TGTA
gi|25551                      :                                                                                                                      CTCAAACT-TCAC-G-GGGCTGGTTCG-CTCTGCTTCCTGTTCGAAAAAAG-TGA---
gi|25552                      :                                                                                                                       CCAAACT-CCAC-A-AA-CTGGTTCA-CTCTATTCCCGGTTCTGAAAAAG-TGA---
gi|25553                      :                                                                                                                        CAAACT-CCAC-G-GA-CTGGTTCA-CTCCACTTTCGGTTCGGAAAAAG-TCA---CAGTCAAGGTGC
gi|25554                      :                                                                                                                        CAAACT-TCACTG-GA-CTGGTTCA-CTCTACTTCCTATT-GG-----G-TCA---CAGTCAAAATACATAGACTGGCTACT-
gi|25555                      :                                                                                                                        CAAACTTCCAC-AAGA-CCAATTCA-CTC------CGGTTCGGAGAAAG-TGAACACAGTGAAGATACGTAGACTGACTAGT-TA
gi|25556                      :                                                                                                                        CAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCTGGCTCGGAGAAAG-TGA---
gi|25557                      :                                                                                                                        CAAACT-CCAG-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGGAAAA
gi|25558                      :                                                                                                                        CAAACT-CCAC-G-GA-CTGGTTCAACTCTACTTCCGGTTCGGAGAGAG-TGA---
gi|25559                      :                                                                                                                        CAAACC-CCAC-G-GA-CTGGTTCA-CTTTACTTCCGGTTCGGAGAAAT-TGA---
gi|25560                      :                                                                                                                        CAAACT-CCAT-G-GT-CTGGTTAA-CTCTACTTCCGGTTCAGAGACAG-TGA---C
gi|25561                      :                                                                                                                        CAAACT-TAACTG-GA-CTGGTTCA-GT----TTGCAGCT-GGAG-----T-----CATTCAAGATACGTAGACTGGCTACT-
gi|25562                      :                                                                                                                        CAAACT-CAAC-G-GA-CTGGTTCA-TGC-ACTTCTGGTTCAGAGAATA-TGA---
gi|25563                      :                                                                                                                         AAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---
gi|25564                      :                                                                                                                          AACT-TCAC-G-GA-CCGGTTCA-CTCTACTTCCAGCTCGGAAAAAG-T
gi|25565                      :                                                                                                                          AACT-CCAC-------TGG---A-CTTTACTTCCTATTCGG-------TCA---CAGTCAAGACAAGTAGACTGGCTAC
gi|25566                      :                                                                                                                                     -GA-CTGGTTCA-CTATACTTCCTGTTTGGAAAAAG-TGA---CAGTCAAATTGCATAGACTGGCTACT-
gi|25567                      :                                                                                                                                       A-CTCGTTCA-CTCTACTTCCGGTTCGGAGAAGGTTAA---CACTC
gi|25568                      :                                                                                                                                                   TCTACTTGCGGTCCGG-------TCA---CAGTAAAGATATGTAGACTGGCTACT-
gi|25569                      :                                                                                                                                                                      AAT-TGA---CAGTCAAGATACGTAGACTGGCTACT-
gi|25570                      :                                                                                                                                                                       AG-TAA---CAGTCAAGATACGTAGACTGGCTACT-





Alignments
lowQualScore                  :                              6           3   6                              6                                 1              1    5 1  1        1                       1   222                          3       
lowQualScore                  :                              .           .   .                              .                                 .              .    . .  .        .                       .   ...                          .       
lowQualScore                  :                              7           7   7                              7                                 4              8    5 7  7        7                       5   888                          1       
consensus                     : AGCTTGCACACCTCGTGTTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTTACGAGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACT-TACTGTA
Reference ( family-675 )      : AGCTTGCACACCTCGTGTTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTTACGAGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACT-TACTGTA
gi|25543                      : AGCTAGCACACCTCGTGCTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-GTTTACGAGAGCTTAATCATTCCGGATGACAACGGAAGAGCCCAAACT-CCAC-G-GA-CTAGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGGTACT-TACTGTA
gi|25544                      : AGCTTGCACACCTCGTGTTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTACCTTACTTATATGGAAAAT-CTTTATGAGAGCGGAATCATTCTGTATGACGACAGAAGAGCTCAAACT-TCAC-A-GA-CTAGTTCA-CTCTACTTCCGGTTTTGAAAGAG-TGA---CAGTCAAGATACGCAGACTGGCTACT-TACTGTA
gi|25545                      : AGCTTGCACACCTTGTGTTGTCCGGAATC-GTATATCAAACTGGA-AATGGCTGGTGCCTTACTTCTATGGAAAAT-CTTTATGAGAGCGGAATCATTCCGGATGATGACTGAAGAGCCCAAACT-TCAC-G-GA-CTAGTTCA-ATGTACTTCCGGTTCAGAGAAAG-TGA---CAGTAAAGATACGTAGACTGGTTTCT-TACTGTA
gi|25546                      : AGCTTGCACACCTCGTGTTGTCCGGAATC-GTATACCAAACCGGA-AATGGCTGGTGCCTTACTGATATGGAAAAT-CGTTACGAGAGTGGAATCATTCCGGATGACGACAGAAGAGCCCAAACT-TCAC-G-GA-CAAGTTCT-CCCTACTTCCGGTTCGAAGAAAG-TGA---CATTTAAGATATGTAAACTGGCTACT-TACTGTA
gi|25547                      :   CTTGCACACCTCGTGTTGTCCGGAATC-GTATATCAAACTGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTGACGAGAGCGAAATCATTCCTGATGACGACGGAAGGGTCCGAACT-CCAC-G-GA-CTAGTTCA-CTCTACTTCCGGTTCGAAGAAAA-TGA---CAGTCAAGATAGGTAGACTGGCTACT-TACTGTA
gi|25548                      :        ACGTTTTGTATTGTCGGGAACCCGGAT-TCAAAC-GCATAATGGCTGGTGCTCAACATGTACAGTAAACGCTTTATGATAAGGGAATCATTCCGGAT
gi|25549                      :                                                                                                                    AGACCAAACT-CAAC-G-GA-CTGGTTCA-CTCTTCTTCCGGCTCGGAGAAAG-TGA---
gi|25550                      :                                                                                                                      CCCAAACT-CCACTG-AA-CTGGTTCA-CTCTGCTTCTAGTTC--AGAA-----A---CAATCAAGATGCGTAGATTGGCTTCTGTA-TGTA
gi|25551                      :                                                                                                                      CTCAAACT-TCAC-G-GGGCTGGTTCG-CTCTGCTTCCTGTTCGAAAAAAG-TGA---
gi|25552                      :                                                                                                                       CCAAACT-CCAC-A-AA-CTGGTTCA-CTCTATTCCCGGTTCTGAAAAAG-TGA---
gi|25553                      :                                                                                                                        CAAACT-CCAC-G-GA-CTGGTTCA-CTCCACTTTCGGTTCGGAAAAAG-TCA---CAGTCAAGGTGC
gi|25554                      :                                                                                                                        CAAACT-TCACTG-GA-CTGGTTCA-CTCTACTTCCTATT-GG-----G-TCA---CAGTCAAAATACATAGACTGGCTACT-
gi|25555                      :                                                                                                                        CAAACTTCCAC-AAGA-CCAATTCA-CTC------CGGTTCGGAGAAAG-TGAACACAGTGAAGATACGTAGACTGACTAGT-TA
gi|25556                      :                                                                                                                        CAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCTGGCTCGGAGAAAG-TGA---
gi|25557                      :                                                                                                                        CAAACT-CCAG-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGGAAAA
gi|25558                      :                                                                                                                        CAAACT-CCAC-G-GA-CTGGTTCAACTCTACTTCCGGTTCGGAGAGAG-TGA---
gi|25559                      :                                                                                                                        CAAACC-CCAC-G-GA-CTGGTTCA-CTTTACTTCCGGTTCGGAGAAAT-TGA---
gi|25560                      :                                                                                                                        CAAACT-CCAT-G-GT-CTGGTTAA-CTCTACTTCCGGTTCAGAGACAG-TGA---C
gi|25561                      :                                                                                                                        CAAACT-TAACTG-GA-CTGGTTCA-GT----TTGCAGCT-GGAG-----T-----CATTCAAGATACGTAGACTGGCTACT-
gi|25562                      :                                                                                                                        CAAACT-CAAC-G-GA-CTGGTTCA-TGC-ACTTCTGGTTCAGAGAATA-TGA---
gi|25563                      :                                                                                                                         AAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---
gi|25564                      :                                                                                                                          AACT-TCAC-G-GA-CCGGTTCA-CTCTACTTCCAGCTCGGAAAAAG-T
gi|25565                      :                                                                                                                          AACT-CCAC-------TGG---A-CTTTACTTCCTATTCGG-------TCA---CAGTCAAGACAAGTAGACTGGCTAC
gi|25566                      :                                                                                                                                     -GA-CTGGTTCA-CTATACTTCCTGTTTGGAAAAAG-TGA---CAGTCAAATTGCATAGACTGGCTACT-
gi|25567                      :                                                                                                                                       A-CTCGTTCA-CTCTACTTCCGGTTCGGAGAAGGTTAA---CACTC
gi|25568                      :                                                                                                                                                   TCTACTTGCGGTCCGG-------TCA---CAGTAAAGATATGTAGACTGGCTACT-
gi|25569                      :                                                                                                                                                                      AAT-TGA---CAGTCAAGATACGTAGACTGGCTACT-
gi|25570                      :                                                                                                                                                                       AG-TAA---CAGTCAAGATACGTAGACTGGCTACT-


blockSeqs                     :                              C           C   T                              G                                 A              T    T A  G        A                       T   ACA                          G
blockSeqs                     :                              .           T   .                              .                                 T              .    T .  .        .                       .   .                            .
blockSeqs                     :                              .           C   .                              .                                 A              .    T .  .        .                       .   .                            .
blockSeqs                     :                              .           T   .                              .                                 G              .    . .  .        .                       .   .                            .
blockSeqs                     :                              .           .   .                              .                                                .    . .  .        .                       .   .                            .
blockSeqs                     :                                                                                                                              .    . .  .        .                       .   .                            .
blockSeqs                     :                                                                                                                              .    . .  .        .                       .   .                            .
blockSeqs                     :                                                                                                                              .    . .  .        .                       .   .                            .
blockSeqs                     :                                                                                                                              .    . .  .        .                       .   .                            .
blockSeqs                     :                                                                                                                              .    . .  .        .                       .   .                            .
blockSeqs                     :                                                                                                                              .    . .  .        .                       .   .                            .
blockSeqs                     :                                                                                                                              .    . .  .        .                       .   .                            .
blockSeqs                     :                                                                                                                              .    . .  .        .                       .   .                             
blockSeqs                     :                                                                                                                              .    . .  .        .                       .   .                             
blockSeqs                     :                                                                                                                              .    . .  .        .                       .   .                             
blockSeqs                     :                                                                                                                              .    . .  .        .                       .   .                             
blockSeqs                     :                                                                                                                              .    . .  .        .                       .   .                             
blockSeqs                     :                                                                                                                              .    . .  .        .                       .   .                             
blockSeqs                     :                                                                                                                              .    . .  .        .                       .   .                             
blockSeqs                     :                                                                                                                              .    . .  .        .                       .   .                             
blockSeqs                     :                                                                                                                              .    . .  .        .                       .   .                             
blockSeqs                     :                                                                                                                                     .  .        .                       .   .                             
blockSeqs                     :                                                                                                                                        .        .                       .   .                             
blockSeqs                     :                                                                                                                                                                         .   .                             
blockSeqs                     :                                                                                                                                                                         .                                 


blockSeqCons                  : 
originalCons                  : AGCTTGCACACCTCGTGTTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTTACGAGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACT-TACTGTA
finalCons                     : AGCTTGCACACCTCGTGTTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTTACGAGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACT-TACTGTA





Alignments
lowQualScore                  :                              6           3   6                              6                                 1              1    5 1  1        1                       1   222                          3       
lowQualScore                  :                              .           .   .                              .                                 .              .    . .  .        .                       .   ...                          .       
lowQualScore                  :                              7           7   7                              7                                 4              8    5 7  7        7                       5   888                          1       
consensus                     : AGCTTGCACACCTCGTGTTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTTACGAGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACT-TACTGTA
Reference ( family-675 )      : AGCTTGCACACCTCGTGTTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTTACGAGAGCGGAATCATTCCGGATGACGACGGAAGAGCCCAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGCTACT-TACTGTA
gi|25543                      : AGCTAGCACACCTCGTGCTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-GTTTACGAGAGCTTAATCATTCCGGATGACAACGGAAGAGCCCAAACT-CCAC-G-GA-CTAGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---CAGTCAAGATACGTAGACTGGGTACT-TACTGTA
gi|25544                      : AGCTTGCACACCTCGTGTTGTCCGGAATC-GTATATCAAACCGGA-AATGGCTGGTACCTTACTTATATGGAAAAT-CTTTATGAGAGCGGAATCATTCTGTATGACGACAGAAGAGCTCAAACT-TCAC-A-GA-CTAGTTCA-CTCTACTTCCGGTTTTGAAAGAG-TGA---CAGTCAAGATACGCAGACTGGCTACT-TACTGTA
gi|25545                      : AGCTTGCACACCTTGTGTTGTCCGGAATC-GTATATCAAACTGGA-AATGGCTGGTGCCTTACTTCTATGGAAAAT-CTTTATGAGAGCGGAATCATTCCGGATGATGACTGAAGAGCCCAAACT-TCAC-G-GA-CTAGTTCA-ATGTACTTCCGGTTCAGAGAAAG-TGA---CAGTAAAGATACGTAGACTGGTTTCT-TACTGTA
gi|25546                      : AGCTTGCACACCTCGTGTTGTCCGGAATC-GTATACCAAACCGGA-AATGGCTGGTGCCTTACTGATATGGAAAAT-CGTTACGAGAGTGGAATCATTCCGGATGACGACAGAAGAGCCCAAACT-TCAC-G-GA-CAAGTTCT-CCCTACTTCCGGTTCGAAGAAAG-TGA---CATTTAAGATATGTAAACTGGCTACT-TACTGTA
gi|25547                      :   CTTGCACACCTCGTGTTGTCCGGAATC-GTATATCAAACTGGA-AATGGCTGGTGCCTTACTTATATGGAAAAT-CTTGACGAGAGCGAAATCATTCCTGATGACGACGGAAGGGTCCGAACT-CCAC-G-GA-CTAGTTCA-CTCTACTTCCGGTTCGAAGAAAA-TGA---CAGTCAAGATAGGTAGACTGGCTACT-TACTGTA
gi|25548                      :        ACGTTTTGTATTGTCGGGAACCCGGAT-TCAAAC-GCATAATGGCTGGTGCTCAACATGTACAGTAAACGCTTTATGATAAGGGAATCATTCCGGAT
gi|25549                      :                                                                                                                    AGACCAAACT-CAAC-G-GA-CTGGTTCA-CTCTTCTTCCGGCTCGGAGAAAG-TGA---
gi|25550                      :                                                                                                                      CCCAAACT-CCACTG-AA-CTGGTTCA-CTCTGCTTCTAGTTC--AGAA-----A---CAATCAAGATGCGTAGATTGGCTTCTGTA-TGTA
gi|25551                      :                                                                                                                      CTCAAACT-TCAC-G-GGGCTGGTTCG-CTCTGCTTCCTGTTCGAAAAAAG-TGA---
gi|25552                      :                                                                                                                       CCAAACT-CCAC-A-AA-CTGGTTCA-CTCTATTCCCGGTTCTGAAAAAG-TGA---
gi|25553                      :                                                                                                                        CAAACT-CCAC-G-GA-CTGGTTCA-CTCCACTTTCGGTTCGGAAAAAG-TCA---CAGTCAAGGTGC
gi|25554                      :                                                                                                                        CAAACT-TCACTG-GA-CTGGTTCA-CTCTACTTCCTATT-GG-----G-TCA---CAGTCAAAATACATAGACTGGCTACT-
gi|25555                      :                                                                                                                        CAAACTTCCAC-AAGA-CCAATTCA-CTC------CGGTTCGGAGAAAG-TGAACACAGTGAAGATACGTAGACTGACTAGT-TA
gi|25556                      :                                                                                                                        CAAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCTGGCTCGGAGAAAG-TGA---
gi|25557                      :                                                                                                                        CAAACT-CCAG-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGGAAAA
gi|25558                      :                                                                                                                        CAAACT-CCAC-G-GA-CTGGTTCAACTCTACTTCCGGTTCGGAGAGAG-TGA---
gi|25559                      :                                                                                                                        CAAACC-CCAC-G-GA-CTGGTTCA-CTTTACTTCCGGTTCGGAGAAAT-TGA---
gi|25560                      :                                                                                                                        CAAACT-CCAT-G-GT-CTGGTTAA-CTCTACTTCCGGTTCAGAGACAG-TGA---C
gi|25561                      :                                                                                                                        CAAACT-TAACTG-GA-CTGGTTCA-GT----TTGCAGCT-GGAG-----T-----CATTCAAGATACGTAGACTGGCTACT-
gi|25562                      :                                                                                                                        CAAACT-CAAC-G-GA-CTGGTTCA-TGC-ACTTCTGGTTCAGAGAATA-TGA---
gi|25563                      :                                                                                                                         AAACT-CCAC-G-GA-CTGGTTCA-CTCTACTTCCGGTTCGGAGAAAG-TGA---
gi|25564                      :                                                                                                                          AACT-TCAC-G-GA-CCGGTTCA-CTCTACTTCCAGCTCGGAAAAAG-T
gi|25565                      :                                                                                                                          AACT-CCAC-------TGG---A-CTTTACTTCCTATTCGG-------TCA---CAGTCAAGACAAGTAGACTGGCTAC
gi|25566                      :                                                                                                                                     -GA-CTGGTTCA-CTATACTTCCTGTTTGGAAAAAG-TGA---CAGTCAAATTGCATAGACTGGCTACT-
gi|25567                      :                                                                                                                                       A-CTCGTTCA-CTCTACTTCCGGTTCGGAGAAGGTTAA---CACTC
gi|25568                      :                                                                                                                                                   TCTACTTGCGGTCCGG-------TCA---CAGTAAAGATATGTAGACTGGCTACT-
gi|25569                      :                                                                                                                                                                      AAT-TGA---CAGTCAAGATACGTAGACTGGCTACT-
gi|25570                      :                                                                                                                                                                       AG-TAA---CAGTCAAGATACGTAGACTGGCTACT-