lowQualScore : 1 1 22 1 1 3333 1 1 1111111 111 11 1111 1111 7777777777777777777777777777777 1 1 111 333 2222222222222 11111 1111 1111
lowQualScore : 6 2 5 11 6 4444 3 1 0 1111 6 0 8 44 6666666 555 1 44 333 7777 22 1111 7777 5555 4444444444444444444444444444444 2 8 4 3 99 3 3 6 8 5 5 7 5 77 1 000 77 1 555 777 777 66 4 4 8888888 1 6666666666666 2 99999 0 1 8 55 3 4 7 5 66 0000 5 0000 5 3 5
lowQualScore : . . . .. . .... . . . .... . . . .. ....... ... . .. ... .... .. .... .... .... ............................... . . . . .. . . . . . . . . .. . ... .. . ... ... ... .. . . ....... . ............. . ..... . . . .. . . . . .. .... . .... . . .
lowQualScore : 5 0 0 55 8 5555 5 5 5 0000 9 9 3 88 6666666 000 8 33 222 7777 55 7777 8888 4444 8888888888888888888888888888888 4 0 8 5 22 7 0 0 0 2 0 5 7 99 6 000 99 7 999 888 888 11 4 4 2222222 9 9999999999999 1 11111 9 1 6 11 7 4 4 0 99 6666 0 6666 0 7 7
consensus : TTCCTCCATGGAGAGAGATTGGCCCAAATATAT---CATACNCGTCTTCGTAC-AAATTGTAGCGCACTT-AANCAACATTTATATTC--TAAAAA--CAT-TGTTGAA---AG----T--C----CC--A-TGTG---TACATGTGGANCAATCGAAG--ACA-G-TAC-AA-T-CATTNCTTCCTCGNCTGTCCAAACTATAACA--ATCNTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAA--CGCTTT---GTTTGATCTGAACCTT--AATGATTTTATACTTT-C-TTTTTTACAAATCGCTGTTCA---TATTGTACAAGT---AA--AATCA-AAC-AC---A---CAAA----ACC------TATTCGGTTACC-CNG-GGCACTCTGGACACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTTT
Reference ( gi|133425 ) : TTCCACCACGGAGACAGATTATCTCAAATAAAC---CATACCCGTCTACG-ACTAAATTGTAGTTCACTT-AACCAACATTTATATTC--CAAAAA--TAT-TGTTGAA---AG----T--C----CC--A-TGTG---CACATGCCGTTCACTCGAAG--ACA-G-TA--AA---CATTTCTTACTCAACTGTCCAAACTATAACA--ATCATCGAACTGAAATGTTTAACACCATAAGATCTGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGAGAAATCCAAGAAACAGCTACAAAACAAATATTGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAA--CTCTTT---GTTTGATCTGAACCTT--AATGATTTTATACTTT-CTTTTTTTACAAATCGCTGTTCA---TATTGTACAAGT---AA--AATCA-AAC-AC---A---CAAA----TCC------TATTCGGTTACC-CAG-GGCACTCTAGACACTCAC-GCATAAC-CACTTTCCTCTCATTTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCCTTTT-TTTT
gi|133426 : TTCCTCCACGAAGAGAGATCGGCTCAAATATAC---CATACCCGTCTACG-ACTAAATTGTTGTTCACTT-AACAAACATTTATATTC--AAAAAA--TAT-TGTTGAA---AG----T--C----CC--A-TGTG---CACATGCCGTTCACTCGAAG--ACA-G-TA--AA---CATTTCTTACTCAACTGTCCAAACTATAACA--ATCATCGAACTGAAATGTTTAACACCATAAGATCTGAAGGCATAACTGATATCAGCCTTAAC-CTGTCGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAA--CGCGTT---GTTTGATCTGAACCTT--AATGATTTTATACTTT-C-CTTTTTACAAATCACTGTTCA---TATTGTACAAGT---AA--AATCA-AAC-AC---A---CAAA----TCC------TATTCGGTTACC-CGG-GGCACTCTGGAAACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTCACCTTCTCGTTCAATCATTTTCAACTTCCAA----TTT-CTTCCCTTTGT-TTTT
gi|133427 : TTCCTCCATAGAGAGAGATTGGCTCAAATATAC---CATACCCGTATATG-ACTAAATTGTAGTTCACTT-AACCAACATTTATATTC--CAAAAA--TAT-TGTTGAA---AG----T--C----CC--A-TGTG---CACATGACTTTCTTTCGAAG--ACA-G-TA--AC---CATTTCTTACTCAACTGTCAAAACTATAACA--ATCCTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTTAGGGGAAATCCAAGAAACAGTGACAAAACAAATATCGCTGTATTTGGTGCTGCGCAAAAGTATATAATTAGTAC-AAAA--CGCTTT---GTTTGATCTG-ATCTT--AATGATTTTATACTCT-C-TTTTTTGCAAATCGCTGTTCA---TATTGTACAAGT---AA--AATCA-AAC-AC---A---CAAA----ACC------TATTCGGTTACC-CCG-G----T----GCACTCAT-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTT
gi|133428 : TTCCTCCATGGAGAGAGATTGGCTCAAATATAC---CATACCCATCTAAG-ACTAAATTGTAGTTCACTT-AATCAACATTTATATTC--TAAAAT--TAT-TGTTGAA---AG----T--C----TC--A-TGTG---CACAGGCTGTTCACTCGAAG--ACA-G-TA--T----CATTTCTTACTCAACTGTCAAAACTATATCA--ATCTTCGAACTGAAATGTTTATCACCATAAGATCCAAAGGCGTAACTGATATCAGCCTTAAC-ATATTGCTAAATGGAAATCCAAGAAACAGCGACAAAACAAATATCGTTGTATTTGATACTGTGCAAAAGTATATAATTAGTACAAAAA--CGGTTT---GTTTGATCTGAACCTT--AATGATTTTATACTTT-C-TTTTTTACAAA---CTGTTCG---TATTGTACAAGT---AA--AATCA-AAC-AC---A---CAAA----ACC------TATTTGGTTACTACAG-GACACTCTCGACACTCAT-GCATAAC-CACTTTTCTCTCATCATT-AC--TCTTCTA----TCCCT-TTAACCTTCTAGTTCAATCA-TTTCAACTTTCAA----TTT-CTTCTTTTTTC-ATTT
gi|133429 : TTCTCCCATGGAGTGAGATTGACTCACATATAT---CGTACTGGTTTATG-ATCAACTTGTAACTCACTT-GACCGACATTTATACT-----AATA--TAT-TGATGAA---AA-------C----CT--A-CGTGTTTCACGTA--GTTTAACAGAAG--TGA-G-TG--AT---TATTTTTTATTCAGCTGTCAGAAACACTACA--ATCTTCGAATTGAAATATTGAACACCAAAAGGTCCGAAGGCAT-ATTGATACCAGTCTTAACTCGGTTACGAAGGTGGACTCGTAGCTTCAGAGACAAAATAAA--------------------TGCAAAAGT-T----CTAGCAC-AAAACGCTCTTTCCAGTTTTATTTGAA-ATTAAAATGATTTTATATTGTAC----TTTACACATCGTTGTTCA---TATTGTACAAATAGAAA--AAT-A-AAC-ATGAAA---CAAAACACTACACGATATATTCAGTAACC-CCGTTGCTCTCTATACACTAAT-GCA-AACTCACATTC--TTCGTCTCT-ACCTTTCTCTAACACTTTCTGTTCATCATTTTGATCCATCATTTTCAACATTCAACTTTTTT-CTCCTCCCTCT-TTTT
gi|133437 : CCCAAATATAT---CATACACGACTTCGTAC-AAATTGCAGT-AACTTGAATCAACATT--TATTCAATAAAAA--CAT-AGTTGCA---AG----T--C----C
gi|133434 : CCCAAATATAT---CATACACGACTTCGTAC-AAATTGCAGT-AACTTGAATCAACATT--TATTCAATAAAAA--CAT-AGTTGCA---AG----T--C----C
gi|133433 : gCCCAAATATAT---CATACACGACTTCGTAC-AAATTGCAGT-AACTTGAATCAACATT--TATTCAATAAAAA--CAT-AGTTGCA---AG----T--C----C
gi|133432 : gCCCAAATATAT---CATACACGACTTCGTAC-AAATTGCAGT-AACTTGAATCAACATT--TATTCAATAAAAA--CAT-AGTTGCA---AG----T--C----C
gi|133438 : gCTCAAAT---CTTGCACACGCGTCTAAA-ACTAGAGTGCAGTTCACTT-AATCATCATTT---TTT--CAAAAA---ATCTATAAAAGATAG----T--C----CA--T-TGTG---TAC
gi|133435 : CCCAAATATAG---CATACACGACTTCATAC-AAATTGCAGT-AACTTGAATCAACATT--TATTCAATAAAAA--CAT-AGTTGCA---AG----T--C----CA--A-ATTG---TCTTTGTGGTGAAATTGAAG--ACACA-T---AT---CATTATTTATTCA--TG-GCAAACTAT
gi|133436 : gCCCAAATATAT---CATACACGACTCCGTAC-AAGTTGCAGT-AACTTGAATCAACATT--TATTCAATAAAAA--CAT-AGTTGCA---AG----T--
gi|133442 : g---CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACTTAT--TC--CAAAAAAATAT-TG--AAA---AT----T--CT---CC--ACTATG---TACATGTGGAGCAATTGAA-----A-G-TAC-AAAT-CATTACCTCCTCATCTGTCC
gi|133439 : ---CATGCCCGCCTCCG-AACGAGTTGTAGTGCACTT-AAGCAACATCTATTTCT--TAAACA--TAT-TG----A---AGACTCC--C----CC--C-TGTG---TACATGTGGACAAATAGAAAGCACA-GCT--------CACTTCTTTCTCAATTGTCtatttatcatgtcgaac
gi|133430 : caattattg---CATGCCCGCCTCCG-AACGAGTTGTAGTGCACCT-AAGCAACATCTATTTCT--TAAACA--CAT-TGTAGAT---TG----C--C----CT--C-TATG---TACATGTGGACAAATAGAAAGCACA-GCT--------CACTTCTTTCTCAATTGTC--AACTTTACCAGCATCAACGa
gi|133441 : ttcctttacaaggaaatgtcaattattg---CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACTTAT--TC--CAAAAAAATAT-TG--AAA---AT----T--CT---CC--ACTATG---TACATGTGGAGCAATTGAA-----A-G-TAC-AAAT-CATTACCTCCTCGTCTGTCC
gi|133443 : ---CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACTTAT--TC--CAAAAAAATA----TTGAA---AA----TTCC----CC--ACTATG---TACATGTGGAGCAATTGAA-----A-G-TAC-AAAT-CATTACCTCCTCGTCTGTCCtatttatcatgtcgaac
gi|133444 : ---CATACGCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACTTAT--TC--CAAAAAAATAT-TG--AAA---AT----T--CT---CC--ACTATG---TACATGTGGAGCAATTGAA-----A-G-TAC-AAAT-CATTACCTCCTCGTCTGTCCtatttatcatgccgaac
gi|133445 : ---CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACTTAT--TC--CAAAAAAATAT-TG--AAA---AT----T--CTCCACT--A-TGTA---CACATGGAG--CAATTGAA-----A-G-TAC-AAAT-CATTACCTCTTCGTCTGTCCtatttatcatgtcgaac
gi|133431 : ---CATATTCGTCTTCGTAC-GAATTGTAGCACGCTG-AAACAACACTTAT--TC--CAAAAAAATAT-TG--AAA---AT----T--CT---CC--ACTGTG---TACATGTGGAGCAATTGAA-----A-G-TACGAAT--CATTACCTCCTCGTCTGTCCtatttgtcgaac
gi|133440 : agaaaatgtcaggtattg---CATGCCCGCCTCCG-AACGAGTTGAAGTGCACTT-AAGCAACATCTATTTCT--TAAACA--CAT-TG----A---AGACTCC--C----CC--C-TGTG---TACATGTGG---ACATATAG--AAA-G-CA--CAGCTCACTTCTTTCTCAATTGTCtatttatcataccgaacgcgctacgctattcgaatcaatctctcacatatgcactgttaccctcaacacacttctctttggtgaacctcatctcacccacaatacaaacgtcgaaatttttaatgctgtccacaaatatata
gi|133446 : caattattgATTCCTGCCTCCG-AACAAGTTGTAGTGCACTT-AAGCAACATCTATTTCT--TAAACA--CAT-TG--AAG---AC----T--C----CCCTC-TGTG---TACATGTGGACAAAT---AG--AAA-G-TA--TAGTTCACTTCTTTCTCAATTGTC---ACCTTTACA--AGCATCAAa
gi|133447 : CCGCCTCCG-AACGAGTTGTAGTGCACTT-AAGCAACATCTGTTTCT--TAAACA--CAT-TGT--AG---AC----T--C----CCCTC-TGTG---TATATGTGAACAAATAGAAAGCACA-GCT--------CACTTCTTCCTCAACTGTC
gi|133448 : GTTTAACACCATAAGATCCGAAGGCATTACTGATATCAGCCTTAAC-CTGTTGCTAAGGAGAAATCCAAGAAACAGCGACAAAACAACTATCGCTGTATTTGATGCTGTGCAAAATTATATTATTAGTAC--AAT--CGCTTT---GTTTGATCTGAACATT--AATGATT------TTT-C-TTTTTTACAAATCGCTGTTCA---TATTGTACAAGT---AA--AATCA-AAC-AC---A---CAAA----ACC------TATTTGGTTACC-CCGTGGCACTCTGGACACT-ACTGTATAAC-CACTTTCCTCTCATCTTTAAT--TTTTCGA----TCTCT-TTAACCTTCTCGTTCAACCATTTTGAACTTTCAG----TTT-CTTCTTTTTTT-TTTa
gi|133449 : TATCGCTGTATTTGATGCTGTGTTAAAGTATATAATTAGTAC-AAAA--CGTTTC---GTTTGATCTGAACCTT--AATG-TTTTATACTTT-C-TTTTTTACAAATTGCTGTTCATATTATTGTACAAGT---AA--AATCA-AAC-AC---A---CAAA----ACC------TATTCGGTTACCTCGG-GGCGCTCTGGACATTCAT-GCATAAC-CACTTTACTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGATCAATCATTTTCAACTTTCAA----TTT-CTTCTTTTTTT-TT
gi|133450 : ggcaacacTATCTGATGCTGTGCAAAAGTATAAAATTAGTAC-AAAA--CGCTTT---GTTTGATCTGAACCTT--AATGTATTTATACTTT--TTTTTTTACAAATCACTGTTCA---TACTGTACAAGT---AA--AACCA-AAC-AC---A---CAAA----ACC------TATTCGG----------GGCACTCTTGACACTCGC-GCACAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTTTTTTTATTTT
gi|133451 : CACATCACTGTTCA---TATTGTACAAGT---AACTAATCA-AAT-AC---ATTGCA---------------TATTCGGTAACCTCGA-GACACTCACGACAATCAT-GAAGAAC-CACTTTCTTCTCGT
gi|133452 : ATCACTGTTCA---CATTGTACAAGT---AA--A--CATAACTAC---G---CA---------------TA-------ACC-CTG-GACTCCCTGGACACTCAT-GTAAAGC-CACTTTCTACTCAGATTT-TC--TTTTTTC----TCTAC-TTATCCGTTTCGTTCCATCATTTTCA--TTTTGT----TTTGTTTCT
Alignments
lowQualScore : 1 22 11 11 11111 1 111 222222 11 11 11111 111111111 1
lowQualScore : 3 1 1 1 7 7 999 0 1 22 55 0 44 1 3333 55 88888 33 2 444 33 2 2 666 333333 1 2 44 00 77 88 1 3 6 5 22222 66 0 5 777 777 55 4 4 777 777 0 1 4 666666666 1 2 2 8 0 0 4 2 4 4 66 9999 4 9999 4 5
lowQualScore : . . . . . . ... . . .. .. . .. . .... .. ..... .. . ... .. . . ... ...... . . .. .. .. .. . . . . ..... .. . . ... ... .. . . ... ... . . . ......... . . . . . . . . . . .. .... . .... . .
lowQualScore : 0 0 5 0 0 3 000 9 0 55 00 5 77 8 9999 00 66666 22 4 111 44 4 8 333 999999 0 6 66 88 88 77 0 5 7 0 55555 99 4 0 000 000 55 0 0 000 000 8 0 0 000000000 0 0 4 0 1 7 0 4 0 4 11 4444 4 4444 4 0
consensus : TTCCTCCACGGAGAGAGATTGGCCCAAATATANCATACNCGTCTTCGTAC-AAATTGTAGTACACTT-AANCAACATTTATATTC--TAAAAACATTGTTGAA-AG----T--CCC--AC-T--GTG-TACATG---TGGANCA-ATCGAAGA-AGTAC-A-A-TCATTTCTTNCTCGACTGTCCAAACTATAACAATCGTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACGCTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-TTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACC-CNG-GGCACTCTGGACACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTTT
Reference ( family-673 ) : TTCCTCCATGGAGAGAGATTGGCCCAAATATATCATACNCGTCTTCGTAC-AAATTGTAGCGCACTT-AANCAACATTTATATTC--TAAAAACATTGTTGAA-AG----T--CCC--A--T--GTG-TACATG---TGGANCA-ATCGAAGACAGTAC-A-A-TCATTNCTTCCTCGNCTGTCCAAACTATAACAATCNTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACGCTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-TTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACC-CNG-GGCACTCTGGACACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTTT
gi|133425 : TTCCACCACGGAGACAGATTATCTCAAATAAACCATACCCGTCTACG-ACTAAATTGTAGTTCACTT-AACCAACATTTATATTC--CAAAAATATTGTTGAA-AG----T--CCC--A--T--GTG-CACATG---CCGTTCA-CTCGAAGACAGTA--A-A--CATTTCTTACTCAACTGTCCAAACTATAACAATCATCGAACTGAAATGTTTAACACCATAAGATCTGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGAGAAATCCAAGAAACAGCTACAAAACAAATATTGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACTCTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTCTTTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAATC-C---------TATTCGGTTACC-CAG-GGCACTCTAGACACTCAC-GCATAAC-CACTTTCCTCTCATTTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCCTTTT-TTTT
gi|133426 : TTCCTCCACGAAGAGAGATCGGCTCAAATATACCATACCCGTCTACG-ACTAAATTGTTGTTCACTT-AACAAACATTTATATTC--AAAAAATATTGTTGAA-AG----T--CCC--A--T--GTG-CACATG---CCGTTCA-CTCGAAGACAGTA--A-A--CATTTCTTACTCAACTGTCCAAACTATAACAATCATCGAACTGAAATGTTTAACACCATAAGATCTGAAGGCATAACTGATATCAGCCTTAAC-CTGTCGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACGCGTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-CTTTTTACAAATCACTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAATC-C---------TATTCGGTTACC-CGG-GGCACTCTGGAAACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTCACCTTCTCGTTCAATCATTTTCAACTTCCAA----TTT-CTTCCCTTTGT-TTTT
gi|133427 : TTCCTCCATAGAGAGAGATTGGCTCAAATATACCATACCCGTATATG-ACTAAATTGTAGTTCACTT-AACCAACATTTATATTC--CAAAAATATTGTTGAA-AG----T--CCC--A--T--GTG-CACATGACTT---TCT-TTCGAAGACAGTA----A-CCATTTCTTACTCAACTGTCAAAACTATAACAATCCTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTTAGGGGAAATCCAAGAAACAGTGACAAAACAAATATCGCTGTATTTGGTGCTGCGCAAAAGTATATAATTAGTAC-AAAACGCTTT-----GTTTGATCTG-ATCTT--AATGATTTTATACTCTC-TTTTTTGCAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACC-CCG-G------TG--CACTCAT-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTT
gi|133428 : TTCCTCCATGGAGAGAGATTGGCTCAAATATACCATACCCATCTAAG-ACTAAATTGTAGTTCACTT-AATCAACATTTATATTC--TAAAATTATTGTTGAA-AG----T--CTC--A--T--GTG-CACAGG---CTGTTCA-CTCGAAGACAGTA------TCATTTCTTACTCAACTGTCAAAACTATATCAATCTTCGAACTGAAATGTTTATCACCATAAGATCCAAAGGCGTAACTGATATCAGCCTTAAC-ATATTGCTAAATGGAAATCCAAGAAACAGCGACAAAACAAATATCGTTGTATTTGATACTGTGCAAAAGTATATAATTAGTACAAAAACGGTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-TTTTTTACAAA---CTGTTCGTATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTTGGTTACTACAG-GACACTCTCGACACTCAT-GCATAAC-CACTTTTCTCTCATCATT-AC--TCTTCTA----TCCCT-TTAACCTTCTAGTTCAATCA-TTTCAACTTTCAA----TTT-CTTCTTTTTTC-ATTT
gi|133429 : TTCTCCCATGGAGTGAGATTGACTCACATATATCGTACTGGTTTATGATC-AACTTGTAACTCACTT-GACCGACATTTATACT-----AATATATTGATGAA-AA-------CCT--A--C--GTGTTTCACG---TAGTTTA-ACAGAAGTGAGT---G-A-TTATTTTTTATTCAGCTGTCAGAAACACTACAATCTTCGAATTGAAATATTGAACACCAAAAGGTCCGAAGGCAT-ATTGATACCAGTCTTAACTCGGTTACGAAGGTGGACTCGTAGCTTCAGAGACAAAATAAA--------------------TGCAAAAGT-T----CTAGCAC-AAAACGCTCTTTCCAGTTTTATTTGAA-ATTAAAATGATTTTATA--TTG-TACTTTACACATCGTTGTTCATATT---GTACAAATAGAAA--AAT-A-AAC-ATGAAA---CAAAACACTACACGATATATTCAGTAACC-CCGTTGCTCTCTATACACTAAT-GCA-AACTCACATTC--TTCGTCTCT-ACCTTTCTCTAACACTTTCTGTTCATCATTTTGATCCATCATTTTCAACATTCAACTTTTTT-CTCCTCCCTCT-TTTT
gi|133430 : CAATTATTGCATGCCCGCCTCCGAAC-GAGTTGTAGTGCACCT-AAGCAACATCTATTTCT--TAAACACATTGTAGAT-TG----C--CCT--C--T--ATG-TACATG---TGGACAA-AT---AGAAAGCAC-A-GCTCACTTCTTTCTCAATTGTC--AACTTTACCA
gi|133431 : ttcctttacaaggaaatgtCAGGTATTGCATATTCGTCTTCGTAC-GAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA----TTCTCC--AC-T--GTG-TACATG---TGGAGCA-ATTGAA---AGTACGA-A-TCATTACCTCCTCGTCTGTCCgcatcaacg
gi|133432 : agaaaatgtGCCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG----T--CCtatttatcataccgaacgcgctacgctattcgaatcaatctctcacatatgcactgttaccctcaacacacttctctttggtgaacctcatctcacccacaatacaaacgtcgaaatttttaatgctgtccacaaatatata
gi|133433 : GCCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG----T--CC
gi|133434 : GCCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG----T--CC
gi|133435 : GCCCAAATATAGCATACACGACTTCATAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG----T--CCA--A--A--TTG-TCTTTG---TGGTGAA-ATTGAAGAC---AC-ATA-TCATTATTTATTCA--TG-GCAAACTAT
gi|133436 : GCCCAAATATATCATACACGACTCCGTAC-AAGTTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG----T--
gi|133437 : CCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG----T--CC
gi|133439 : CAATTATTGCATGCCCGCCTCCGAAC-GAGTTGTAGTGCACTT-AAGCAACATCTAT-TTC--TTAAA-CAT-ATTGAAGAC----T--CCC--CCCT--GTG-TACATG---TGGACAA-AT---AGAAAGCAC-A-GCTCACTTCTTTCTCAATTGTC
gi|133440 : CAATTATTGCATGCCCGCCTCCGAAC-GAGTTGAAGTGCACTT-AAGCAACATCTATTTCT--TAAACACATTG----A-AGACTCC--CCC--C--T--GTG-TACATG---TGGA-CATAT---AGAAAGCAC-A-GCTCACTTCTTTCTCAATTGTCa
gi|133441 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA----TTCTCC--AC-T--ATG-TACATG---TGGAGCA-ATTGAA---AGTACAA-A-TCATTACCTCCTCGTCTGTCCTATTTAT--CA--TGTCGAACa
gi|133442 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA----TTCTCC--AC-T--ATG-TACATG---TGGAGCA-ATTGAA---AGTACAA-A-TCATTACCTCCTCATCTGTCCTATTTAT--CA--TGTCGAAC
gi|133443 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA----TTCCCC--AC-T--ATG-TACATG---TGGAGCA-ATTGAA---AGTACAA-A-TCATTACCTCCTCGTCTGTCC
gi|133444 : CATACGCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA----TTCTCC--AC-T--ATG-TACATG---TGGAGCA-ATTGAA---AGTACAA-A-TCATTACCTCCTCGTCTGTCCTATTTAT--CA--TGTCGAACtatttatcatgccgaac
gi|133445 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA----TTCTCC--AC-T--ATG-TACACA---TGGAGCA-ATTGAA---AGTACAA-A-TCATTACCTCTTCGTCTGTC----CTAT-----TTGTCGAAC
gi|133446 : ATTCCTGCCTCCGAAC-AAGTTGTAGTGCACTT-AAGCAACATCTATTTCT--TAAACACATTG--AAG-AC----T--CCC--C--TCTGTG-TACATG---TGGACAA-AT---AGAAAGTAT-A-GTTCACTTCTTTCTCAATTGTC---ACCTTTACAAGCATCAA
gi|133447 : CGCCTCCGAAC-GAGTTGTAGTGCACTT-AAGCAACATCTGTTTCT--TAAACACATTGT--AG-AC----T--CCCCTC--T--GTG-TATATG---TGAACAA-AT---AGAAAGCAC-A-GCTCACTTCTTCCTCAACTGTC
gi|133448 : cGTTTAACACCATAAGATCCGAAGGCATTACTGATATCAGCCTTAAC-CTGTTGCTAAGGAGAAATCCAAGAAACAGCGACAAAACAACTATCGCTGTATTTGATGCTGTGCAAAATTATATTATTAGTAC--AATCGCTTT-----GTTTGATCTGAACATT--AATGATT------TTTC-TTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTTGGTTACC-CCGTGGCACTCTGGACACT-ACTGTATAAC-CACTTTCCTCTCATCTTTAAT--TTTTCGA----TCTCT-TTAACCTTCTCGTTCAACCATTTTGAACTTTCAG----TTT-CTTCTTTTTTT-TTTa
gi|133449 : GGCAACAC---TATCGCTGTATTTGATGCTGTGTTAAAGTATATAATTAGTAC-AAAACGTTTC-----GTTTGATCTGAACCTT--AATG-TTTTATACTTTC-TTTTTTACAAATTGCTGTTCATATTATTGTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACCTCGG-GGCGCTCTGGACATTCAT-GCATAAC-CACTTTACTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGATCAATCATTTTCAACTTTCAA----TTT-CTTCTTTTTTT-TT
gi|133450 : TATCTGATGCTGTGCAAAAGTATAAAATTAGTAC-AAAACGCTTT-----GTTTGATCTGAACCTT--AATGTATTTATACTTTT-TTTTTTACAAATCACTGTTCATACT---GTACAAGT---AA--AACCA-AAC-AC---A---CAAAAC-C---------TATTCG---------G-GGCACTCTTGACACTCGC-GCACAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTTTTTTTATTTT
gi|133451 : CACATCACTGTTCATATT---GTACAAGT---AACTAATCA-AAT-AC---ATTGCA---------------TATTCGGTAACCTCGA-GACACTCACGACAATCAT-GAAGAAC-CACTTTCTTCTCGT
gi|133452 : ATCACTGTTCACATT---GTACAAGT---AA--A--CATAACTAC---G---CA---------------TA-------ACC-CTG-GACTCCCTGGACACTCAT-GTAAAGC-CACTTTCTACTCAGATTT-TC--TTTTTTC----TCTAC-TTATCCGTTTCGTTCCATCATTTTCA--TTTTGT----TTTGTTTCTATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|133438 ): CTCAAATCTTGCACACGCGTCTAAAACTAGAGTGCAGTTCACTTAATCATCATTTTTTCAAAAAATCTATAAAAGATAGTCCATTGTGTAC
Alignments
lowQualScore : 1 22 11 222222 33333 222222 11 22 11 11111 111111111 1
lowQualScore : 1 1 1 1 8 8 44 0 1 22 44 2 5 1 222222 777 444 33 2 5 22222 555555 1 1 55 11 0 00 22 1 3 6 5 22222 66 0 5 777 777 55 4 4 777 777 0 1 4 666666666 1 2 2 8 0 0 4 2 4 4 66 9999 4 9999 4 5
lowQualScore : . . . . . . .. . . .. .. . . . ...... ... ... .. . . ..... ...... . . .. .. . .. .. . . . . ..... .. . . ... ... .. . . ... ... . . . ......... . . . . . . . . . . .. .... . .... . .
lowQualScore : 0 0 0 7 4 7 11 4 0 99 33 2 9 7 999999 888 111 44 4 4 55555 999999 7 0 22 88 8 99 99 2 5 7 0 55555 99 4 0 000 000 55 0 0 000 000 8 0 0 000000000 0 0 4 0 1 7 0 4 0 4 11 4444 4 4444 4 0
consensus : TTCCTCCACGGAGAGAGATTGGCCCAAATATANCATACNCGTCTNCGTAC-AAATTGTAGTACACTT-AANCAACATTTATATTC--CAAAAACATTGTTGAA-AG---T--CCCA-C-TGTGTACATG---TGGANCA-ATNGA---A-AGTAC-A-A-TCATTTCTTNCTCGACTGTCCNAACTATAACAATCGTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACGCTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-TTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACC-CNG-GGCACTCTGGACACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTTT
Reference ( family-673 ) : TTCCTCCACGGAGAGAGATTGGCCCAAATATANCATACNCGTCTTCGTAC-AAATTGTAGTACACTT-AANCAACATTTATATTC--TAAAAACATTGTTGAA-AG---T--CCCA-C-TGTGTACATG---TGGANCA-ATCGAAG-A-AGTAC-A-A-TCATTTCTTNCTCGACTGTCCAAACTATAACAATCGTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACGCTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-TTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACC-CNG-GGCACTCTGGACACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTTT
gi|133425 : TTCCACCACGGAGACAGATTATCTCAAATAAACCATACCCGTCTACG-ACTAAATTGTAGTTCACTT-AACCAACATTTATATTC--CAAAAATATTGTTGAA-AG---T--CCCA---TGTGCACATG---CCGTTCA-CTCGAAG-ACAGTA--A-A--CATTTCTTACTCAACTGTCCAAACTATAACAATCATCGAACTGAAATGTTTAACACCATAAGATCTGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGAGAAATCCAAGAAACAGCTACAAAACAAATATTGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACTCTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTCTTTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAATC-C---------TATTCGGTTACC-CAG-GGCACTCTAGACACTCAC-GCATAAC-CACTTTCCTCTCATTTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCCTTTT-TTTT
gi|133426 : TTCCTCCACGAAGAGAGATCGGCTCAAATATACCATACCCGTCTACG-ACTAAATTGTTGTTCACTT-AACAAACATTTATATTC--AAAAAATATTGTTGAA-AG---T--CCCA---TGTGCACATG---CCGTTCA-CTCGAAG-ACAGTA--A-A--CATTTCTTACTCAACTGTCCAAACTATAACAATCATCGAACTGAAATGTTTAACACCATAAGATCTGAAGGCATAACTGATATCAGCCTTAAC-CTGTCGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACGCGTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-CTTTTTACAAATCACTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAATC-C---------TATTCGGTTACC-CGG-GGCACTCTGGAAACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTCACCTTCTCGTTCAATCATTTTCAACTTCCAA----TTT-CTTCCCTTTGT-TTTT
gi|133427 : TTCCTCCATAGAGAGAGATTGGCTCAAATATACCATACCCGTATATG-ACTAAATTGTAGTTCACTT-AACCAACATTTATATTC--CAAAAATATTGTTGAA-AG---T--CCCA---TGTGCACATGACTT---TCT-TTCGAAG-ACAGTA----A-CCATTTCTTACTCAACTGTCAAAACTATAACAATCCTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTTAGGGGAAATCCAAGAAACAGTGACAAAACAAATATCGCTGTATTTGGTGCTGCGCAAAAGTATATAATTAGTAC-AAAACGCTTT-----GTTTGATCTG-ATCTT--AATGATTTTATACTCTC-TTTTTTGCAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACC-CCG-G------TG--CACTCAT-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTT
gi|133428 : TTCCTCCATGGAGAGAGATTGGCTCAAATATACCATACCCATCTAAG-ACTAAATTGTAGTTCACTT-AATCAACATTTATATTC--TAAAATTATTGTTGAA-AG---T--CTCA---TGTGCACAGG---CTGTTCA-CTCGAAG-ACAGTA------TCATTTCTTACTCAACTGTCAAAACTATATCAATCTTCGAACTGAAATGTTTATCACCATAAGATCCAAAGGCGTAACTGATATCAGCCTTAAC-ATATTGCTAAATGGAAATCCAAGAAACAGCGACAAAACAAATATCGTTGTATTTGATACTGTGCAAAAGTATATAATTAGTACAAAAACGGTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-TTTTTTACAAA---CTGTTCGTATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTTGGTTACTACAG-GACACTCTCGACACTCAT-GCATAAC-CACTTTTCTCTCATCATT-AC--TCTTCTA----TCCCT-TTAACCTTCTAGTTCAATCA-TTTCAACTTTCAA----TTT-CTTCTTTTTTC-ATTT
gi|133429 : TTCTCCCATGGAGTGAGATTGACTCACATATATCGTACTGGTTTATGATC-AACTTGTAACTCACTT-GACCGACATTTATACT-----AATATATTGATGAA-AA------CCTA-CGTGTTT-CACG---TAGTTTA-ACAGAAGTG-AGTG----A-TTATTTTTTATTCAGCTGTCAGAAACACTACAATCTTCGAATTGAAATATTGAACACCAAAAGGTCCGAAGGCAT-ATTGATACCAGTCTTAACTCGGTTACGAAGGTGGACTCGTAGCTTCAGAGACAAAATAAA--------------------TGCAAAAGT-T----CTAGCAC-AAAACGCTCTTTCCAGTTTTATTTGAA-ATTAAAATGATTTTATA--TTG-TACTTTACACATCGTTGTTCATATT---GTACAAATAGAAA--AAT-A-AAC-ATGAAA---CAAAACACTACACGATATATTCAGTAACC-CCGTTGCTCTCTATACACTAAT-GCA-AACTCACATTC--TTCGTCTCT-ACCTTTCTCTAACACTTTCTGTTCATCATTTTGATCCATCATTTTCAACATTCAACTTTTTT-CTCCTCCCTCT-TTTT
gi|133430 : TTCCTTTACAAGGAAA---TG--TCAATTATTGCATGCCCGCCTCCGAAC-GAGTTGTAGTGCACCT-AAGCAACATCTATTTCT--TAAACACATTGTAGAT-TG------CCCT-C-TATGTACATG---TGGACAA-ATAGA---A-AGCAC-A-GCTCACTTCTTTCTCAATTGTC--AACTTTACCA
gi|133431 : CAGGTATTGCATATTCGTCTTCGTAC-GAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCTCCA-C-TGTGTACATG---TGGAGCA-ATTGA---A-AGTACGA-A-TCATTACCTCCTCGTCTGTCCgcatcaacg
gi|133432 : agaaaatgtGCCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--CCtatttatcataccgaacgcgctacgctattcgaatcaatctctcacatatgcactgttaccctcaacacacttctctttggtgaacctcatctcacccacaatacaaacgtcgaaatttttaatgctgtccacaaatatata
gi|133433 : GCCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--CC
gi|133434 : GCCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--CC
gi|133435 : GCCCAAATATAGCATACACGACTTCATAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--CCAA-A-T-TGTCTTTG---TGGTGAA-ATTGAAG-A---CAC-ATA-TCATTATTTATTCA--TG-GCAAACTAT
gi|133436 : GCCCAAATATATCATACACGACTCCGTAC-AAGTTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--
gi|133437 : CCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--CC
gi|133438 : CTCAAATCTTGCACACGCGTCTAAA-ACTAGAGTGCAGTTCACTT-AATCATCATTT---TTT--CAAAAA-ATCTATAAA-AGA--TAGTCCA-T-TGTGTAC
gi|133439 : CAATTATTGCATGCCCGCCTCCGAAC-GAGTTGTAGTGCACTT-AAGCAACATCTAT-TTC--T-TAAACA-TATTGAAGAC---TC-CCCC-C-TGTGTACATG---TGGACAA-ATAGA---A-AGCAC-A-GCTCACTTCTTTCTCAATTGTC
gi|133440 : CAATTATTGCATGCCCGCCTCCGAAC-GAGTTGAAGTGCACTT-AAGCAACATCTATTTCT--TAAACACATTG----A-AGACTC--CCCC-C-TGTGTACATG---TGGA-CATATAGA---A-AGCAC-A-GCTCACTTCTTTCTCAATTGTCa
gi|133441 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCTCCA-C-TATGTACATG---TGGAGCA-ATTGA---A-AGTACAA-A-TCATTACCTCCTCGTCTGTCCTATTTAT--CA--TGTCGAACa
gi|133442 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCTCCA-C-TATGTACATG---TGGAGCA-ATTGA---A-AGTACAA-A-TCATTACCTCCTCATCTGTCCTATTTAT--CA--TGTCGAAC
gi|133443 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCCCCA-C-TATGTACATG---TGGAGCA-ATTGA---A-AGTACAA-A-TCATTACCTCCTCGTCTGTCCTATTTAT--CA--TGCCGAAC
gi|133444 : CATACGCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCTCCA-C-TATGTACATG---TGGAGCA-ATTGA---A-AGTACAA-A-TCATTACCTCCTCGTCTGTCCTATTTAT--CA--TGTCGAAC
gi|133445 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCTCCA-C-TATGTACACA---TGGAGCA-ATTGA---A-AGTACAA-A-TCATTACCTCTTCGTCTGTC----CTAT-----TTGTCGAAC
gi|133446 : ATTCCTGCCTCCGAAC-AAGTTGTAGTGCACTT-AAGCAACATCTATTTCT--TAAACACATTG----A-AGACTC--CCCT-C-TGTGTACATG---TGGACAA-ATAGA---A-AGTAT-A-GTTCACTTCTTTCTCAATTGTC---ACCTTTACAAGCATCAA
gi|133447 : CGCCTCCGAAC-GAGTTGTAGTGCACTT-AAGCAACATCTGTTTCT--TAAACACATTGT--AG-AC---T--CCCCTC-TGTGTATATG---TGAACAA-ATAGA---A-AGCAC-A-GCTCACTTCTTCCTCAACTGTC
gi|133448 : cGTTTAACACCATAAGATCCGAAGGCATTACTGATATCAGCCTTAAC-CTGTTGCTAAGGAGAAATCCAAGAAACAGCGACAAAACAACTATCGCTGTATTTGATGCTGTGCAAAATTATATTATTAGTAC--AATCGCTTT-----GTTTGATCTGAACATT--AATGATT------TTTC-TTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTTGGTTACC-CCGTGGCACTCTGGACACT-ACTGTATAAC-CACTTTCCTCTCATCTTTAAT--TTTTCGA----TCTCT-TTAACCTTCTCGTTCAACCATTTTGAACTTTCAG----TTT-CTTCTTTTTTT-TTTa
gi|133449 : GGCAACAC---TATCGCTGTATTTGATGCTGTGTTAAAGTATATAATTAGTAC-AAAACGTTTC-----GTTTGATCTGAACCTT--AATG-TTTTATACTTTC-TTTTTTACAAATTGCTGTTCATATTATTGTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACCTCGG-GGCGCTCTGGACATTCAT-GCATAAC-CACTTTACTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGATCAATCATTTTCAACTTTCAA----TTT-CTTCTTTTTTT-TT
gi|133450 : TATCTGATGCTGTGCAAAAGTATAAAATTAGTAC-AAAACGCTTT-----GTTTGATCTGAACCTT--AATGTATTTATACTTTT-TTTTTTACAAATCACTGTTCATACT---GTACAAGT---AA--AACCA-AAC-AC---A---CAAAAC-C---------TATTCG---------G-GGCACTCTTGACACTCGC-GCACAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTTTTTTTATTTT
gi|133451 : CACATCACTGTTCATATT---GTACAAGT---AACTAATCA-AAT-AC---ATTGCA---------------TATTCGGTAACCTCGA-GACACTCACGACAATCAT-GAAGAAC-CACTTTCTTCTCGT
gi|133452 : ATCACTGTTCACATT---GTACAAGT---AA--A--CATAACTAC---G---CA---------------TA-------ACC-CTG-GACTCCCTGGACACTCAT-GTAAAGC-CACTTTCTACTCAGATTT-TC--TTTTTTC----TCTAC-TTATCCGTTTCGTTCCATCATTTTCA--TTTTGT----TTTGTTTCTATT
Alignments
lowQualScore : 1 22 111 222222 111 2222222 11 22 11 11111 111111111 1
lowQualScore : 1 1 1 1 8 8 44 0 1 22 444 2 5 1 222222 777 444 33 2 1 666 3333333 1 1 55 00 2 00 22 1 3 6 5 22222 66 0 5 777 777 55 4 4 777 777 0 1 4 666666666 1 2 2 8 0 0 4 2 4 4 66 9999 4 9999 4 5
lowQualScore : . . . . . . .. . . .. ... . . . ...... ... ... .. . . ... ....... . . .. .. . .. .. . . . . ..... .. . . ... ... .. . . ... ... . . . ......... . . . . . . . . . . .. .... . .... . .
lowQualScore : 0 0 0 0 4 7 11 4 0 99 999 2 9 7 999999 888 111 44 4 0 555 4444444 7 0 22 11 0 99 99 2 5 7 0 55555 99 4 0 000 000 55 0 0 000 000 8 0 0 000000000 0 0 4 0 1 7 0 4 0 4 11 4444 4 4444 4 0
consensus : TTCCTCCACGGAGAGAGATTGGCCCAAATATANCATACNCGTCTNCGTAC-AAATTGTAGTACACTT-AANCAACATTTATATTC--CAAAAACATTGTTGAA-AG---T--CCCA-C-TGTGTACATG---TGGANCA-ATNGAA---AGTAC-A--A-TCATTTCTTNCTCGACTGTCCNAACTATAACAATCGTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACGCTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-TTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACC-CNG-GGCACTCTGGACACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTTT
Reference ( family-673 ) : TTCCTCCACGGAGAGAGATTGGCCCAAATATANCATACNCGTCTNCGTAC-AAATTGTAGTACACTT-AANCAACATTTATATTC--CAAAAACATTGTTGAA-AG---T--CCCA-C-TGTGTACATG---TGGANCA-ATNGAA---AGTAC-A--A-TCATTTCTTNCTCGACTGTCCNAACTATAACAATCGTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACGCTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-TTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACC-CNG-GGCACTCTGGACACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTTT
gi|133425 : TTCCACCACGGAGACAGATTATCTCAAATAAACCATACCCGTCTACG-ACTAAATTGTAGTTCACTT-AACCAACATTTATATTC--CAAAAATATTGTTGAA-AG---T--CCCA---TGTGCACATG---CCGTTCA-CTCGAAGACAGTA--A--A--CATTTCTTACTCAACTGTCCAAACTATAACAATCATCGAACTGAAATGTTTAACACCATAAGATCTGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGAGAAATCCAAGAAACAGCTACAAAACAAATATTGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACTCTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTCTTTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAATC-C---------TATTCGGTTACC-CAG-GGCACTCTAGACACTCAC-GCATAAC-CACTTTCCTCTCATTTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCCTTTT-TTTT
gi|133426 : TTCCTCCACGAAGAGAGATCGGCTCAAATATACCATACCCGTCTACG-ACTAAATTGTTGTTCACTT-AACAAACATTTATATTC--AAAAAATATTGTTGAA-AG---T--CCCA---TGTGCACATG---CCGTTCA-CTCGAAGACAGTA--A--A--CATTTCTTACTCAACTGTCCAAACTATAACAATCATCGAACTGAAATGTTTAACACCATAAGATCTGAAGGCATAACTGATATCAGCCTTAAC-CTGTCGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACGCGTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-CTTTTTACAAATCACTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAATC-C---------TATTCGGTTACC-CGG-GGCACTCTGGAAACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTCACCTTCTCGTTCAATCATTTTCAACTTCCAA----TTT-CTTCCCTTTGT-TTTT
gi|133427 : TTCCTCCATAGAGAGAGATTGGCTCAAATATACCATACCCGTATATG-ACTAAATTGTAGTTCACTT-AACCAACATTTATATTC--CAAAAATATTGTTGAA-AG---T--CCCA---TGTGCACATGACTT---TCT-TTCGAAGACAGTA-----A-CCATTTCTTACTCAACTGTCAAAACTATAACAATCCTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTTAGGGGAAATCCAAGAAACAGTGACAAAACAAATATCGCTGTATTTGGTGCTGCGCAAAAGTATATAATTAGTAC-AAAACGCTTT-----GTTTGATCTG-ATCTT--AATGATTTTATACTCTC-TTTTTTGCAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACC-CCG-G------TG--CACTCAT-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTT
gi|133428 : TTCCTCCATGGAGAGAGATTGGCTCAAATATACCATACCCATCTAAG-ACTAAATTGTAGTTCACTT-AATCAACATTTATATTC--TAAAATTATTGTTGAA-AG---T--CTCA---TGTGCACAGG---CTGTTCA-CTCGAA---G--AC-AGTA-TCATTTCTTACTCAACTGTCAAAACTATATCAATCTTCGAACTGAAATGTTTATCACCATAAGATCCAAAGGCGTAACTGATATCAGCCTTAAC-ATATTGCTAAATGGAAATCCAAGAAACAGCGACAAAACAAATATCGTTGTATTTGATACTGTGCAAAAGTATATAATTAGTACAAAAACGGTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-TTTTTTACAAA---CTGTTCGTATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTTGGTTACTACAG-GACACTCTCGACACTCAT-GCATAAC-CACTTTTCTCTCATCATT-AC--TCTTCTA----TCCCT-TTAACCTTCTAGTTCAATCA-TTTCAACTTTCAA----TTT-CTTCTTTTTTC-ATTT
gi|133429 : TTCTCCCATGGAGTGAGATTGACTCACATATATCGTACTGGTTTATGATC-AACTTGTAACTCACTT-GACCGACATTTATACT-----AATATATTGATGAA-AA------CCTA-CGTGTTT-CACG---TAGTTTA-ACAGAAGTGAGTG-----A-TTATTTTTTATTCAGCTGTCAGAAACACTACAATCTTCGAATTGAAATATTGAACACCAAAAGGTCCGAAGGCAT-ATTGATACCAGTCTTAACTCGGTTACGAAGGTGGACTCGTAGCTTCAGAGACAAAATAAA--------------------TGCAAAAGT-T----CTAGCAC-AAAACGCTCTTTCCAGTTTTATTTGAA-ATTAAAATGATTTTATA--TTG-TACTTTACACATCGTTGTTCATATT---GTACAAATAGAAA--AAT-A-AAC-ATGAAA---CAAAACACTACACGATATATTCAGTAACC-CCGTTGCTCTCTATACACTAAT-GCA-AACTCACATTC--TTCGTCTCT-ACCTTTCTCTAACACTTTCTGTTCATCATTTTGATCCATCATTTTCAACATTCAACTTTTTT-CTCCTCCCTCT-TTTT
gi|133430 : TTCCTTTACAAGGAAA---TG--TCAATTATTGCATGCCCGCCTCCGAAC-GAGTTGTAGTGCACCT-AAGCAACATCTATTTCT--TAAACACATTGTAGAT-TG------CCCT-C-TATGTACATG---TGGACAA-ATAGAA---AGCAC-A--GCTCACTTCTTTCTCAATTGTC--AACTTTACCA
gi|133431 : CAGGTATTGCATATTCGTCTTCGTAC-GAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCTCCA-C-TGTGTACATG---TGGAGCA-ATTGAA---AGTACGA--A-TCATTACCTCCTCGTCTGTCCTATTTATgcatcaacg
gi|133432 : agaaaatgtGCCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--CCcataccgaacgcgctacgctattcgaatcaatctctcacatatgcactgttaccctcaacacacttctctttggtgaacctcatctcacccacaatacaaacgtcgaaatttttaatgctgtccacaaatatata
gi|133433 : GCCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--CC
gi|133434 : GCCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--CC
gi|133435 : GCCCAAATATAGCATACACGACTTCATAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--CCAA-A-T-TGTCTTTG---TGGTGAA-ATTGAA---GACAC-AT-A-TCATTATTTATTCA--TG-GCAAACTAT
gi|133436 : GCCCAAATATATCATACACGACTCCGTAC-AAGTTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--
gi|133437 : CCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--CC
gi|133438 : CTCAAATCTTGCACACGCGTCTAAA-ACTAGAGTGCAGTTCACTT-AATCATCATTT---TTT--CAAAAA-ATCTATAAA-AGA--TAGTCCA-T-TGTGTAC
gi|133439 : CAATTATTGCATGCCCGCCTCCGAAC-GAGTTGTAGTGCACTT-AAGCAACATCTAT-TTC--T-TAAACA-TATTGAAGAC---TC-CCCC-C-TGTGTACATG---TGGACAA-ATAGAA---AGCAC-A--GCTCACTTCTTTCTCAATTGTC
gi|133440 : CAATTATTGCATGCCCGCCTCCGAAC-GAGTTGAAGTGCACTT-AAGCAACATCTATTTCT--TAAACACATTG----A-AGACTC--CCCC-C-TGTGTACATG---TGGA-CATATAGAA---AGCAC-A--GCTCACTTCTTTCTCAATTGTCa
gi|133441 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCTCCA-C-TATGTACATG---TGGAGCA-ATTGAA---AGTACAA--A-TCATTACCTCCTCGTCTGTCCTATTTAT--CA--TGTCGAACa
gi|133442 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCTCCA-C-TATGTACATG---TGGAGCA-ATTGAA---AGTACAA--A-TCATTACCTCCTCATCTGTCCTATTTAT--CA--TGTCGAAC
gi|133443 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCCCCA-C-TATGTACATG---TGGAGCA-ATTGAA---AGTACAA--A-TCATTACCTCCTCGTCTGTCCTATTTAT--CA--TGCCGAAC
gi|133444 : CATACGCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCTCCA-C-TATGTACATG---TGGAGCA-ATTGAA---AGTACAA--A-TCATTACCTCCTCGTCTGTCCTATTTAT--CA--TGTCGAAC
gi|133445 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCTCCA-C-TATGTACACA---TGGAGCA-ATTGAA---AGTACAA--A-TCATTACCTCTTCGTCTGTC----CTAT-----TTGTCGAAC
gi|133446 : ATTCCTGCCTCCGAAC-AAGTTGTAGTGCACTT-AAGCAACATCTATTTCT--TAAACACATTG----A-AGACTC--CCCT-C-TGTGTACATG---TGGACAA-ATAGAA---AGTAT-A--GTTCACTTCTTTCTCAATTGTC---ACCTTTACAAGCATCAA
gi|133447 : CGCCTCCGAAC-GAGTTGTAGTGCACTT-AAGCAACATCTGTTTCT--TAAACACATTGT--AG-AC---T--CCCCTC-TGTGTATATG---TGAACAA-ATAGAA---AGCAC-A--GCTCACTTCTTCCTCAACTGTC
gi|133448 : cGTTTAACACCATAAGATCCGAAGGCATTACTGATATCAGCCTTAAC-CTGTTGCTAAGGAGAAATCCAAGAAACAGCGACAAAACAACTATCGCTGTATTTGATGCTGTGCAAAATTATATTATTAGTAC--AATCGCTTT-----GTTTGATCTGAACATT--AATGATT------TTTC-TTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTTGGTTACC-CCGTGGCACTCTGGACACT-ACTGTATAAC-CACTTTCCTCTCATCTTTAAT--TTTTCGA----TCTCT-TTAACCTTCTCGTTCAACCATTTTGAACTTTCAG----TTT-CTTCTTTTTTT-TTTa
gi|133449 : GGCAACAC---TATCGCTGTATTTGATGCTGTGTTAAAGTATATAATTAGTAC-AAAACGTTTC-----GTTTGATCTGAACCTT--AATG-TTTTATACTTTC-TTTTTTACAAATTGCTGTTCATATTATTGTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACCTCGG-GGCGCTCTGGACATTCAT-GCATAAC-CACTTTACTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGATCAATCATTTTCAACTTTCAA----TTT-CTTCTTTTTTT-TT
gi|133450 : TATCTGATGCTGTGCAAAAGTATAAAATTAGTAC-AAAACGCTTT-----GTTTGATCTGAACCTT--AATGTATTTATACTTTT-TTTTTTACAAATCACTGTTCATACT---GTACAAGT---AA--AACCA-AAC-AC---A---CAAAAC-C---------TATTCG---------G-GGCACTCTTGACACTCGC-GCACAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTTTTTTTATTTT
gi|133451 : CACATCACTGTTCATATT---GTACAAGT---AACTAATCA-AAT-AC---ATTGCA---------------TATTCGGTAACCTCGA-GACACTCACGACAATCAT-GAAGAAC-CACTTTCTTCTCGT
gi|133452 : ATCACTGTTCACATT---GTACAAGT---AA--A--CATAACTAC---G---CA---------------TA-------ACC-CTG-GACTCCCTGGACACTCAT-GTAAAGC-CACTTTCTACTCAGATTT-TC--TTTTTTC----TCTAC-TTATCCGTTTCGTTCCATCATTTTCA--TTTTGT----TTTGTTTCTATT
Alignments
lowQualScore : 1 22 111 222222 111 2222222 11 22 11 11111 111111111 1
lowQualScore : 1 1 1 1 8 8 44 0 1 22 444 2 5 1 222222 777 444 33 2 1 666 3333333 1 1 55 00 2 00 22 1 3 6 5 22222 66 0 5 777 777 55 4 4 777 777 0 1 4 666666666 1 2 2 8 0 0 4 2 4 4 66 9999 4 9999 4 5
lowQualScore : . . . . . . .. . . .. ... . . . ...... ... ... .. . . ... ....... . . .. .. . .. .. . . . . ..... .. . . ... ... .. . . ... ... . . . ......... . . . . . . . . . . .. .... . .... . .
lowQualScore : 0 0 0 0 4 7 11 4 0 99 999 2 9 7 999999 888 111 44 4 0 555 4444444 7 0 22 11 0 99 99 2 5 7 0 55555 99 4 0 000 000 55 0 0 000 000 8 0 0 000000000 0 0 4 0 1 7 0 4 0 4 11 4444 4 4444 4 0
consensus : TTCCTCCACGGAGAGAGATTGGCCCAAATATANCATACNCGTCTNCGTAC-AAATTGTAGTACACTT-AANCAACATTTATATTC--CAAAAACATTGTTGAA-AG---T--CCCA-C-TGTGTACATG---TGGANCA-ATNGAA---AGTAC-A--A-TCATTTCTTNCTCGACTGTCCNAACTATAACAATCGTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACGCTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-TTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACC-CNG-GGCACTCTGGACACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTTT
Reference ( family-673 ) : TTCCTCCACGGAGAGAGATTGGCCCAAATATANCATACNCGTCTNCGTAC-AAATTGTAGTACACTT-AANCAACATTTATATTC--CAAAAACATTGTTGAA-AG---T--CCCA-C-TGTGTACATG---TGGANCA-ATNGAA---AGTAC-A--A-TCATTTCTTNCTCGACTGTCCNAACTATAACAATCGTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACGCTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-TTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACC-CNG-GGCACTCTGGACACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTTT
gi|133425 : TTCCACCACGGAGACAGATTATCTCAAATAAACCATACCCGTCTACG-ACTAAATTGTAGTTCACTT-AACCAACATTTATATTC--CAAAAATATTGTTGAA-AG---T--CCCA---TGTGCACATG---CCGTTCA-CTCGAAGACAGTA--A--A--CATTTCTTACTCAACTGTCCAAACTATAACAATCATCGAACTGAAATGTTTAACACCATAAGATCTGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGAGAAATCCAAGAAACAGCTACAAAACAAATATTGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACTCTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTCTTTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAATC-C---------TATTCGGTTACC-CAG-GGCACTCTAGACACTCAC-GCATAAC-CACTTTCCTCTCATTTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCCTTTT-TTTT
gi|133426 : TTCCTCCACGAAGAGAGATCGGCTCAAATATACCATACCCGTCTACG-ACTAAATTGTTGTTCACTT-AACAAACATTTATATTC--AAAAAATATTGTTGAA-AG---T--CCCA---TGTGCACATG---CCGTTCA-CTCGAAGACAGTA--A--A--CATTTCTTACTCAACTGTCCAAACTATAACAATCATCGAACTGAAATGTTTAACACCATAAGATCTGAAGGCATAACTGATATCAGCCTTAAC-CTGTCGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACGCGTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-CTTTTTACAAATCACTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAATC-C---------TATTCGGTTACC-CGG-GGCACTCTGGAAACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTCACCTTCTCGTTCAATCATTTTCAACTTCCAA----TTT-CTTCCCTTTGT-TTTT
gi|133427 : TTCCTCCATAGAGAGAGATTGGCTCAAATATACCATACCCGTATATG-ACTAAATTGTAGTTCACTT-AACCAACATTTATATTC--CAAAAATATTGTTGAA-AG---T--CCCA---TGTGCACATGACTT---TCT-TTCGAAGACAGTA-----A-CCATTTCTTACTCAACTGTCAAAACTATAACAATCCTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTTAGGGGAAATCCAAGAAACAGTGACAAAACAAATATCGCTGTATTTGGTGCTGCGCAAAAGTATATAATTAGTAC-AAAACGCTTT-----GTTTGATCTG-ATCTT--AATGATTTTATACTCTC-TTTTTTGCAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACC-CCG-G------TG--CACTCAT-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTT
gi|133428 : TTCCTCCATGGAGAGAGATTGGCTCAAATATACCATACCCATCTAAG-ACTAAATTGTAGTTCACTT-AATCAACATTTATATTC--TAAAATTATTGTTGAA-AG---T--CTCA---TGTGCACAGG---CTGTTCA-CTCGAA---G--AC-AGTA-TCATTTCTTACTCAACTGTCAAAACTATATCAATCTTCGAACTGAAATGTTTATCACCATAAGATCCAAAGGCGTAACTGATATCAGCCTTAAC-ATATTGCTAAATGGAAATCCAAGAAACAGCGACAAAACAAATATCGTTGTATTTGATACTGTGCAAAAGTATATAATTAGTACAAAAACGGTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-TTTTTTACAAA---CTGTTCGTATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTTGGTTACTACAG-GACACTCTCGACACTCAT-GCATAAC-CACTTTTCTCTCATCATT-AC--TCTTCTA----TCCCT-TTAACCTTCTAGTTCAATCA-TTTCAACTTTCAA----TTT-CTTCTTTTTTC-ATTT
gi|133429 : TTCTCCCATGGAGTGAGATTGACTCACATATATCGTACTGGTTTATGATC-AACTTGTAACTCACTT-GACCGACATTTATACT-----AATATATTGATGAA-AA------CCTA-CGTGTTT-CACG---TAGTTTA-ACAGAAGTGAGTG-----A-TTATTTTTTATTCAGCTGTCAGAAACACTACAATCTTCGAATTGAAATATTGAACACCAAAAGGTCCGAAGGCAT-ATTGATACCAGTCTTAACTCGGTTACGAAGGTGGACTCGTAGCTTCAGAGACAAAATAAA--------------------TGCAAAAGT-T----CTAGCAC-AAAACGCTCTTTCCAGTTTTATTTGAA-ATTAAAATGATTTTATA--TTG-TACTTTACACATCGTTGTTCATATT---GTACAAATAGAAA--AAT-A-AAC-ATGAAA---CAAAACACTACACGATATATTCAGTAACC-CCGTTGCTCTCTATACACTAAT-GCA-AACTCACATTC--TTCGTCTCT-ACCTTTCTCTAACACTTTCTGTTCATCATTTTGATCCATCATTTTCAACATTCAACTTTTTT-CTCCTCCCTCT-TTTT
gi|133430 : TTCCTTTACAAGGAAA---TG--TCAATTATTGCATGCCCGCCTCCGAAC-GAGTTGTAGTGCACCT-AAGCAACATCTATTTCT--TAAACACATTGTAGAT-TG------CCCT-C-TATGTACATG---TGGACAA-ATAGAA---AGCAC-A--GCTCACTTCTTTCTCAATTGTC--AACTTTACCA
gi|133431 : CAGGTATTGCATATTCGTCTTCGTAC-GAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCTCCA-C-TGTGTACATG---TGGAGCA-ATTGAA---AGTACGA--A-TCATTACCTCCTCGTCTGTCCTATTTATgcatcaacg
gi|133432 : agaaaatgtGCCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--CCcataccgaacgcgctacgctattcgaatcaatctctcacatatgcactgttaccctcaacacacttctctttggtgaacctcatctcacccacaatacaaacgtcgaaatttttaatgctgtccacaaatatata
gi|133433 : GCCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--CC
gi|133434 : GCCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--CC
gi|133435 : GCCCAAATATAGCATACACGACTTCATAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--CCAA-A-T-TGTCTTTG---TGGTGAA-ATTGAA---GACAC-AT-A-TCATTATTTATTCA--TG-GCAAACTAT
gi|133436 : GCCCAAATATATCATACACGACTCCGTAC-AAGTTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--
gi|133437 : CCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATT--TATTCAATAAAAACATAGTTGCA-AG---T--CC
gi|133438 : CTCAAATCTTGCACACGCGTCTAAA-ACTAGAGTGCAGTTCACTT-AATCATCATTT---TTT--CAAAAA-ATCTATAAA-AGA--TAGTCCA-T-TGTGTAC
gi|133439 : CAATTATTGCATGCCCGCCTCCGAAC-GAGTTGTAGTGCACTT-AAGCAACATCTAT-TTC--T-TAAACA-TATTGAAGAC---TC-CCCC-C-TGTGTACATG---TGGACAA-ATAGAA---AGCAC-A--GCTCACTTCTTTCTCAATTGTC
gi|133440 : CAATTATTGCATGCCCGCCTCCGAAC-GAGTTGAAGTGCACTT-AAGCAACATCTATTTCT--TAAACACATTG----A-AGACTC--CCCC-C-TGTGTACATG---TGGA-CATATAGAA---AGCAC-A--GCTCACTTCTTTCTCAATTGTCa
gi|133441 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCTCCA-C-TATGTACATG---TGGAGCA-ATTGAA---AGTACAA--A-TCATTACCTCCTCGTCTGTCCTATTTAT--CA--TGTCGAACa
gi|133442 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCTCCA-C-TATGTACATG---TGGAGCA-ATTGAA---AGTACAA--A-TCATTACCTCCTCATCTGTCCTATTTAT--CA--TGTCGAAC
gi|133443 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCCCCA-C-TATGTACATG---TGGAGCA-ATTGAA---AGTACAA--A-TCATTACCTCCTCGTCTGTCCTATTTAT--CA--TGCCGAAC
gi|133444 : CATACGCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCTCCA-C-TATGTACATG---TGGAGCA-ATTGAA---AGTACAA--A-TCATTACCTCCTCGTCTGTCCTATTTAT--CA--TGTCGAAC
gi|133445 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACT--TATTC--CAAAAAAA-TATTGAA-AA---TTCTCCA-C-TATGTACACA---TGGAGCA-ATTGAA---AGTACAA--A-TCATTACCTCTTCGTCTGTC----CTAT-----TTGTCGAAC
gi|133446 : ATTCCTGCCTCCGAAC-AAGTTGTAGTGCACTT-AAGCAACATCTATTTCT--TAAACACATTG----A-AGACTC--CCCT-C-TGTGTACATG---TGGACAA-ATAGAA---AGTAT-A--GTTCACTTCTTTCTCAATTGTC---ACCTTTACAAGCATCAA
gi|133447 : CGCCTCCGAAC-GAGTTGTAGTGCACTT-AAGCAACATCTGTTTCT--TAAACACATTGT--AG-AC---T--CCCCTC-TGTGTATATG---TGAACAA-ATAGAA---AGCAC-A--GCTCACTTCTTCCTCAACTGTC
gi|133448 : cGTTTAACACCATAAGATCCGAAGGCATTACTGATATCAGCCTTAAC-CTGTTGCTAAGGAGAAATCCAAGAAACAGCGACAAAACAACTATCGCTGTATTTGATGCTGTGCAAAATTATATTATTAGTAC--AATCGCTTT-----GTTTGATCTGAACATT--AATGATT------TTTC-TTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTTGGTTACC-CCGTGGCACTCTGGACACT-ACTGTATAAC-CACTTTCCTCTCATCTTTAAT--TTTTCGA----TCTCT-TTAACCTTCTCGTTCAACCATTTTGAACTTTCAG----TTT-CTTCTTTTTTT-TTTa
gi|133449 : GGCAACAC---TATCGCTGTATTTGATGCTGTGTTAAAGTATATAATTAGTAC-AAAACGTTTC-----GTTTGATCTGAACCTT--AATG-TTTTATACTTTC-TTTTTTACAAATTGCTGTTCATATTATTGTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACCTCGG-GGCGCTCTGGACATTCAT-GCATAAC-CACTTTACTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGATCAATCATTTTCAACTTTCAA----TTT-CTTCTTTTTTT-TT
gi|133450 : TATCTGATGCTGTGCAAAAGTATAAAATTAGTAC-AAAACGCTTT-----GTTTGATCTGAACCTT--AATGTATTTATACTTTT-TTTTTTACAAATCACTGTTCATACT---GTACAAGT---AA--AACCA-AAC-AC---A---CAAAAC-C---------TATTCG---------G-GGCACTCTTGACACTCGC-GCACAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTTTTTTTATTTT
gi|133451 : CACATCACTGTTCATATT---GTACAAGT---AACTAATCA-AAT-AC---ATTGCA---------------TATTCGGTAACCTCGA-GACACTCACGACAATCAT-GAAGAAC-CACTTTCTTCTCGT
gi|133452 : ATCACTGTTCACATT---GTACAAGT---AA--A--CATAACTAC---G---CA---------------TA-------ACC-CTG-GACTCCCTGGACACTCAT-GTAAAGC-CACTTTCTACTCAGATTT-TC--TTTTTTC----TCTAC-TTATCCGTTTCGTTCCATCATTTTCA--TTTTGT----TTTGTTTCTATT
blockSeqs : C C T A A T TC G C TA AAT T T G ATAG CG ACT TT T C GAC CAGTA T A AA CA A AA AT A A T A TTCCA AA . ATT AGA CT T T GAA TTG T A TACACGATA T A G T T T T A CT ACAC G CTTT G A
blockSeqs : C C T A A T TC G C TA AAT T T . ACTC TC . TT . C GAC CAGC T A AA AA A AA AT C A . . . . . . . . . . . . A . . T T C T . T . . . . . . . .
blockSeqs : C C T A T T TC G T TA AAT T T . ACTC C . TT . C GTG CGAA T A AA AA A AT AT T A . . . . . . . . . . . . A . . T T A . . T . . . . . . . .
blockSeqs : T T T A T T TC G C TA AAT T T . TTC C . AC . A . CATA T A AG AG A TA AT T T . . . . . . . . . . . . A . . A . C . . T . . . . . . . .
blockSeqs : G C C C T . GC G G TA AAT C T . TTC A . AG . A . CAGC T T AA CT A AC AG G . . . . . . . . . . . . . A . . T . C . . T . . . . . . . .
blockSeqs : G T T T T . AC G A TA AAT A T . TTC T . TG . T . CAGC A C GT CA T TA T G . . . . . . . . . . . A . . T . G . . C . . . . . . . .
blockSeqs : T A A T T . TC . T TA A C T . TTC C . AC . T . CAAA A A AA CT A . . G . . . . . . . . . . . A . . A . G . . G . . . . . . . .
blockSeqs : T A A T T . GC . T TA C C T . TTC C . AG . A . CAAA T T AA CT T . . G . . . . . . . . . . . . T . . A . . . . . . .
blockSeqs : T A A T T . GC . T TG T C T . TTC C . AG . A . CAAA T T GT CT T . . G . . . . . . . . . . . . . . . . .
blockSeqs : G A A T A . AC . T T T C T . TC C . AG . T . CAAA A C AT CT T . . A
blockSeqs : T A A C A . AC . T . C C T . T C . AG . T . CAAA A C GT . T .
blockSeqs : T A A T T . AC . T . C C T . T C . AG . T . TAGT A C GT . A
blockSeqs : G G T A T . AC . T . T C T . T C . AC . T . CAGC A C GT . .
blockSeqs : G C C C T . AC . G . T C T . T C . AC . T . AA A C AA
blockSeqs : G C C C T . GC . G . C A T . T . . T . A . A T T AA
blockSeqs : T T T T . GC . A . C A . . T . . A . A . A T C A
blockSeqs : T T T A . A . A . C A . . T .
blockSeqs : T T T A . A . A . C A . . T
blockSeqs : G T T . . A . A . C A . . T
blockSeqs : T T T . . A . A . T C . . T
blockSeqs : C C C . . A . G . T C . . .
blockSeqs : C C . . A . G . . . . . .
blockSeqCons : ** C** *** CAGA***
originalCons : TTCCTCCACGGAGAGAGATTGGCCCAAATATANCATACNCGTCTNCGTAC-AAATTGTAGTACACTT-AANCAACATTTATATTC--CAAAAACATTGTTGAA-AG---T--CCCA-C-TGTGTACATG---TGGANCA-ATNGAA---AGTAC-A--A-TCATTTCTTNCTCGACTGTCCNAACTATAACAATCGTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACGCTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-TTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACC-CNG-GGCACTCTGGACACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTTT
finalCons : TTCCTCCACGGAGAGAGATTGGCCCAAATATANCATACNCGTCTNCGTAC-AAATTGTAGTACACTT-AANCAACATT--TATTC--CAAAAACATTGTTGAA-AG---T--CCCAC--TGTGTACATG---TGGANCA-ATNGAA---AGTACAGA---TCATTTCTTNCTCGACTGTCCNAACTATAACAATCGTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACGCTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-TTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACC-CNG-GGCACTCTGGACACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTTT
Alignments
lowQualScore : 1 22222 222222 11 11 22 11 11111 111111111 1
lowQualScore : 1 1 1 1 8 8 44 0 1 99 00000 2 5 1 222222 777 444 33 2 1 444 33 22 1 1 55 00 2 00 22 1 3 6 5 22222 66 0 5 777 777 55 4 4 777 777 0 1 4 666666666 1 2 2 8 0 0 4 2 4 4 66 9999 4 9999 4 5
lowQualScore : . . . . . . .. . . .. ..... . . . ...... ... ... .. . . ... .. .. . . .. .. . .. .. . . . . ..... .. . . ... ... .. . . ... ... . . . ......... . . . . . . . . . . .. .... . .... . .
lowQualScore : 0 0 0 0 4 7 11 4 0 66 66666 2 9 7 999999 888 111 44 4 0 111 88 11 7 0 22 11 0 99 99 2 5 7 0 55555 99 4 0 000 000 55 0 0 000 000 8 0 0 000000000 0 0 4 0 1 7 0 4 0 4 11 4444 4 4444 4 0
consensus : TTCCTCCACGGAGAGAGATTGGCCCAAATATANCATACNCGTCTNCGTAC-AAATTGTAGTACACTT-AANCAACATTTAT--TC--C--AAAAACATTGTTGAA-AG---T--CCCA-C-TGTGTACATG---TGGANCA-ATNGAA---AGTACAG--ATCATTTCTTNCTCGACTGTCCNAACTATAACAATCGTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACGCTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-TTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACC-CNG-GGCACTCTGGACACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTTT
Reference ( family-673 ) : TTCCTCCACGGAGAGAGATTGGCCCAAATATANCATACNCGTCTNCGTAC-AAATTGTAGTACACTT-AANCAACATTTAT--TC--C--AAAAACATTGTTGAA-AG---T--CCCA-C-TGTGTACATG---TGGANCA-ATNGAA---AGTACAG--ATCATTTCTTNCTCGACTGTCCNAACTATAACAATCGTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACGCTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-TTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACC-CNG-GGCACTCTGGACACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTTT
gi|133425 : TTCCACCACGGAGACAGATTATCTCAAATAAACCATACCCGTCTACG-ACTAAATTGTAGTTCACTT-AACCAACATTTATATTC--C--AAAAATATTGTTGAA-AG---T--CCCA---TGTGCACATG---CCGTTCA-CTCGAA---G--ACAGTAAACATTTCTTACTCAACTGTCCAAACTATAACAATCATCGAACTGAAATGTTTAACACCATAAGATCTGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTAAGGAGAAATCCAAGAAACAGCTACAAAACAAATATTGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACTCTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTCTTTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAATC-C---------TATTCGGTTACC-CAG-GGCACTCTAGACACTCAC-GCATAAC-CACTTTCCTCTCATTTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCCTTTT-TTTT
gi|133426 : TTCCTCCACGAAGAGAGATCGGCTCAAATATACCATACCCGTCTACG-ACTAAATTGTTGTTCACTT-AACAAACATTTATATTC--A--AAAAATATTGTTGAA-AG---T--CCCA---TGTGCACATG---CCGTTCA-CTCGAA---G--ACAGTAAACATTTCTTACTCAACTGTCCAAACTATAACAATCATCGAACTGAAATGTTTAACACCATAAGATCTGAAGGCATAACTGATATCAGCCTTAAC-CTGTCGCTAAGGGGAAATCCAAGAAACAGCGACAAAACAAATATCGCTGTATTTGATGCTGTGCAAAAGTATATAATTAGTAC-AAAACGCGTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-CTTTTTACAAATCACTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAATC-C---------TATTCGGTTACC-CGG-GGCACTCTGGAAACTCAC-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTCACCTTCTCGTTCAATCATTTTCAACTTCCAA----TTT-CTTCCCTTTGT-TTTT
gi|133427 : TTCCTCCATAGAGAGAGATTGGCTCAAATATACCATACCCGTATATG-ACTAAATTGTAGTTCACTT-AACCAACATTTATATTC--C--AAAAATATTGTTGAA-AG---T--CCCA---TGTGCACATGACTT---TCT-TTCGAA---G--ACAGTAACCATTTCTTACTCAACTGTCAAAACTATAACAATCCTCGAACTGAAATGTTTAACACCATAAGATCCGAAGGCATAACTGATATCAGCCTTAAC-CTGTTGCTTAGGGGAAATCCAAGAAACAGTGACAAAACAAATATCGCTGTATTTGGTGCTGCGCAAAAGTATATAATTAGTAC-AAAACGCTTT-----GTTTGATCTG-ATCTT--AATGATTTTATACTCTC-TTTTTTGCAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACC-CCG-G------TG--CACTCAT-GCATAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTCTTTTT-TTT
gi|133428 : TTCCTCCATGGAGAGAGATTGGCTCAAATATACCATACCCATCTAAG-ACTAAATTGTAGTTCACTT-AATCAACATTTATATTC--T--AAAATTATTGTTGAA-AG---T--CTCA---TGTGCACAGG---CTGTTCA-CTCGAA---G--ACAGT-ATCATTTCTTACTCAACTGTCAAAACTATATCAATCTTCGAACTGAAATGTTTATCACCATAAGATCCAAAGGCGTAACTGATATCAGCCTTAAC-ATATTGCTAAATGGAAATCCAAGAAACAGCGACAAAACAAATATCGTTGTATTTGATACTGTGCAAAAGTATATAATTAGTACAAAAACGGTTT-----GTTTGATCTGAACCTT--AATGATTTTATACTTTC-TTTTTTACAAA---CTGTTCGTATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTTGGTTACTACAG-GACACTCTCGACACTCAT-GCATAAC-CACTTTTCTCTCATCATT-AC--TCTTCTA----TCCCT-TTAACCTTCTAGTTCAATCA-TTTCAACTTTCAA----TTT-CTTCTTTTTTC-ATTT
gi|133429 : TTCTCCCATGGAGTGAGATTGACTCACATATATCGTACTGGTTTATGATC-AACTTGTAACTCACTT-GACCGACATTTAT--AC--T--AATA-TATTGATGAA-AA------CCTA-CGTGTTT-CACG---TAGTTTA-ACAGAAGTGAGT---G--ATTATTTTTTATTCAGCTGTCAGAAACACTACAATCTTCGAATTGAAATATTGAACACCAAAAGGTCCGAAGGCAT-ATTGATACCAGTCTTAACTCGGTTACGAAGGTGGACTCGTAGCTTCAGAGACAAAATAAA--------------------TGCAAAAGT-T----CTAGCAC-AAAACGCTCTTTCCAGTTTTATTTGAA-ATTAAAATGATTTTATA--TTG-TACTTTACACATCGTTGTTCATATT---GTACAAATAGAAA--AAT-A-AAC-ATGAAA---CAAAACACTACACGATATATTCAGTAACC-CCGTTGCTCTCTATACACTAAT-GCA-AACTCACATTC--TTCGTCTCT-ACCTTTCTCTAACACTTTCTGTTCATCATTTTGATCCATCATTTTCAACATTCAACTTTTTT-CTCCTCCCTCT-TTTT
gi|133430 : TTCCTTTACAAGGAAA---TG--TCAATTATTGCATGCCCGCCTCCGAAC-GAGTTGTAGTGCACCT-AAGCAACATCTAT--TT--CTTAAACACATTGTAGAT-TG------CCCT-C-TATGTACATG---TGGACAA-ATAGAA---AGCACAG--CTCACTTCTTTCTCAATTGTC--AACTTTACCA
gi|133431 : CAGGTATTGCATATTCGTCTTCGTAC-GAATTGTAGCACGCTG-AAACAACACTTAT--TC--C--AAAAAAA-TATTGAA-AA---TTCTCCA-C-TGTGTACATG---TGGAGCA-ATTGAA---AGTACGA--ATCATTACCTCCTCGTCTGTCCTATTTATgcatcaacg
gi|133432 : agaaaatgtGCCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATTTAT--TCAAT--AAAAACATAGTTGCA-AG---T--CCcataccgaacgcgctacgctattcgaatcaatctctcacatatgcactgttaccctcaacacacttctctttggtgaacctcatctcacccacaatacaaacgtcgaaatttttaatgctgtccacaaatatata
gi|133433 : GCCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATTTAT--TCAAT--AAAAACATAGTTGCA-AG---T--CC
gi|133434 : GCCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATTTAT--TCAAT--AAAAACATAGTTGCA-AG---T--CC
gi|133435 : GCCCAAATATAGCATACACGACTTCATAC-AAATTGCAGTA-ACTTGAATCAACATTTAT--TCAAT--AAAAACATAGTTGCA-AG---T--CCAA-A-T-TGTCTTTG---TGGTGAA-ATTGAA---GACACAT--ATCATTATTTATTCA--TG-GCAAACTAT
gi|133436 : GCCCAAATATATCATACACGACTCCGTAC-AAGTTGCAGTA-ACTTGAATCAACATTTAT--TCAAT--AAAAACATAGTTGCA-AG---T--
gi|133437 : CCCAAATATATCATACACGACTTCGTAC-AAATTGCAGTA-ACTTGAATCAACATTTAT--TCAAT--AAAAACATAGTTGCA-AG---T--CC
gi|133438 : CTCAAATCTTGCACACGCGTCTAAA-ACTAGAGTGCAGTTCACTT-AATCATCATTT-T--TT--C--AAAAA-ATCTATAAA-AGA--TAGTCCA-T-TGTGTAC
gi|133439 : CAATTATTGCATGCCCGCCTCCGAAC-GAGTTGTAGTGCACTT-AAGCAACATCTAT--TT--C--TTAAACA-TATTGAAGAC---TC-CCCC-C-TGTGTACATG---TGGACAA-ATAGAA---AGCACAG--CTCACTTCTTTCTCAATTGTC
gi|133440 : CAATTATTGCATGCCCGCCTCCGAAC-GAGTTGAAGTGCACTT-AAGCAACATCTAT--TT--CTTAAACACATTG----A-AGACTC--CCCC-C-TGTGTACATG---TGGA-CATATAGAA---AGCACAG--CTCACTTCTTTCTCAATTGTCa
gi|133441 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACTTAT--TC--C--AAAAAAA-TATTGAA-AA---TTCTCCA-C-TATGTACATG---TGGAGCA-ATTGAA---AGTACAA--ATCATTACCTCCTCGTCTGTCCTATTTAT--CA--TGTCGAACa
gi|133442 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACTTAT--TC--C--AAAAAAA-TATTGAA-AA---TTCTCCA-C-TATGTACATG---TGGAGCA-ATTGAA---AGTACAA--ATCATTACCTCCTCATCTGTCCTATTTAT--CA--TGTCGAAC
gi|133443 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACTTAT--TC--C--AAAAAAA-TATTGAA-AA---TTCCCCA-C-TATGTACATG---TGGAGCA-ATTGAA---AGTACAA--ATCATTACCTCCTCGTCTGTCCTATTTAT--CA--TGCCGAAC
gi|133444 : CATACGCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACTTAT--TC--C--AAAAAAA-TATTGAA-AA---TTCTCCA-C-TATGTACATG---TGGAGCA-ATTGAA---AGTACAA--ATCATTACCTCCTCGTCTGTCCTATTTAT--CA--TGTCGAAC
gi|133445 : CATACTCGTCTTCGTAC-AAATTGTAGCACGCTG-AAACAACACTTAT--TC--C--AAAAAAA-TATTGAA-AA---TTCTCCA-C-TATGTACACA---TGGAGCA-ATTGAA---AGTACAA--ATCATTACCTCTTCGTCTGTC----CTAT-----TTGTCGAAC
gi|133446 : ATTCCTGCCTCCGAAC-AAGTTGTAGTGCACTT-AAGCAACATCTAT--TT--CTTAAACACATTG----A-AGACTC--CCCT-C-TGTGTACATG---TGGACAA-ATAGAA---AGTATAG--TTCACTTCTTTCTCAATTGTC---ACCTTTACAAGCATCAA
gi|133447 : CGCCTCCGAAC-GAGTTGTAGTGCACTT-AAGCAACATCTGT--TT--CTTAAACACATTGT--AG-AC---T--CCCCTC-TGTGTATATG---TGAACAA-ATAGAA---AGCACAG--CTCACTTCTTCCTCAACTGTC
gi|133448 : cGTTTAACACCATAAGATCCGAAGGCATTACTGATATCAGCCTTAAC-CTGTTGCTAAGGAGAAATCCAAGAAACAGCGACAAAACAACTATCGCTGTATTTGATGCTGTGCAAAATTATATTATTAGTAC--AATCGCTTT-----GTTTGATCTGAACATT--AATGATT------TTTC-TTTTTTACAAATCGCTGTTCATATT---GTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTTGGTTACC-CCGTGGCACTCTGGACACT-ACTGTATAAC-CACTTTCCTCTCATCTTTAAT--TTTTCGA----TCTCT-TTAACCTTCTCGTTCAACCATTTTGAACTTTCAG----TTT-CTTCTTTTTTT-TTTa
gi|133449 : GGCAACAC---TATCGCTGTATTTGATGCTGTGTTAAAGTATATAATTAGTAC-AAAACGTTTC-----GTTTGATCTGAACCTT--AATG-TTTTATACTTTC-TTTTTTACAAATTGCTGTTCATATTATTGTACAAGT---AA--AATCA-AAC-AC---A---CAAAAC-C---------TATTCGGTTACCTCGG-GGCGCTCTGGACATTCAT-GCATAAC-CACTTTACTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGATCAATCATTTTCAACTTTCAA----TTT-CTTCTTTTTTT-TT
gi|133450 : TATCTGATGCTGTGCAAAAGTATAAAATTAGTAC-AAAACGCTTT-----GTTTGATCTGAACCTT--AATGTATTTATACTTTT-TTTTTTACAAATCACTGTTCATACT---GTACAAGT---AA--AACCA-AAC-AC---A---CAAAAC-C---------TATTCG---------G-GGCACTCTTGACACTCGC-GCACAAC-CACTTTCCTCTCATCTTT-AC--TTTTCTA----TCTCT-TTAACCTTCTCGTTCAATCATTTTCAACTTTCAA----TTT-CTTCTTTTTTTATTTT
gi|133451 : CACATCACTGTTCATATT---GTACAAGT---AACTAATCA-AAT-AC---ATTGCA---------------TATTCGGTAACCTCGA-GACACTCACGACAATCAT-GAAGAAC-CACTTTCTTCTCGT
gi|133452 : ATCACTGTTCACATT---GTACAAGT---AA--A--CATAACTAC---G---CA---------------TA-------ACC-CTG-GACTCCCTGGACACTCAT-GTAAAGC-CACTTTCTACTCAGATTT-TC--TTTTTTC----TCTAC-TTATCCGTTTCGTTCCATCATTTTCA--TTTTGT----TTTGTTTCTATT